ysdD-rpmH-rnpA-yidD



Position: 331-455, Conformation: #1







DMS reactivity > 1.0 0.0 0.4 0.7 G/U/No data
Position: 0 (position.label in template: 0.5')5' Position: 1 (position.label in template: 1.U) Reactivity: nanU Position: 2 (position.label in template: 2.G) Reactivity: nanG Position: 3 (position.label in template: 3.A) Reactivity: nanA Position: 4 (position.label in template: 4.A) Reactivity: nanA Position: 5 (position.label in template: 5.A) Reactivity: nanA Position: 6 (position.label in template: 6.C) Reactivity: nanC Position: 7 (position.label in template: 7.G) Reactivity: nanG Position: 8 (position.label in template: 8.C) Reactivity: nanC Position: 9 (position.label in template: 9.A) Reactivity: nanA Position: 10 (position.label in template: 10.C) Reactivity: nanC Position: 11 (position.label in template: 11.U) Reactivity: nanU Position: 12 (position.label in template: 12.U) Reactivity: nanU Position: 13 (position.label in template: 13.U) Reactivity: nanU Position: 14 (position.label in template: 14.U) Reactivity: nanU Position: 15 (position.label in template: 15.C) Reactivity: nanC Position: 16 (position.label in template: 16.A) Reactivity: nanA Position: 17 (position.label in template: 17.A) Reactivity: nanA Position: 18 (position.label in template: 18.C) Reactivity: nanC Position: 19 (position.label in template: 19.C) Reactivity: nanC Position: 20 (position.label in template: 20.G) Reactivity: nanG Position: 21 (position.label in template: 21.U) Reactivity: nanU Position: 22 (position.label in template: 22.C) Reactivity: nanC Position: 23 (position.label in template: 23.U) Reactivity: nanU Position: 24 (position.label in template: 24.G) Reactivity: nanG Position: 25 (position.label in template: 25.U) Reactivity: nanU Position: 26 (position.label in template: 26.A) Reactivity: nanA Position: 27 (position.label in template: 27.C) Reactivity: nanC Position: 28 (position.label in template: 28.U) Reactivity: nanU Position: 29 (position.label in template: 29.G) Reactivity: nanG Position: 30 (position.label in template: 30.A) Reactivity: nanA Position: 31 (position.label in template: 31.A) Reactivity: nanA Position: 32 (position.label in template: 32.G) Reactivity: nanG Position: 33 (position.label in template: 33.C) Reactivity: nanC Position: 34 (position.label in template: 34.G) Reactivity: nanG Position: 35 (position.label in template: 35.C) Reactivity: 0C Position: 36 (position.label in template: 36.A) Reactivity: 0.5A Position: 37 (position.label in template: 37.A) Reactivity: 0.5A Position: 38 (position.label in template: 38.C) Reactivity: 0C Position: 39 (position.label in template: 39.C) Reactivity: 0C Position: 40 (position.label in template: 40.G) Reactivity: nanG Position: 41 (position.label in template: 41.U) Reactivity: nanU Position: 42 (position.label in template: 42.U) Reactivity: nanU Position: 43 (position.label in template: 43.C) Reactivity: 1C Position: 44 (position.label in template: 44.U) Reactivity: nanU Position: 45 (position.label in template: 45.C) Reactivity: 1C Position: 46 (position.label in template: 46.A) Reactivity: 0A Position: 47 (position.label in template: 47.C) Reactivity: 0C Position: 48 (position.label in template: 48.G) Reactivity: nanG Position: 49 (position.label in template: 49.G) Reactivity: nanG Position: 50 (position.label in template: 50.C) Reactivity: 0.5C Position: 51 (position.label in template: 51.U) Reactivity: nanU Position: 52 (position.label in template: 52.U) Reactivity: nanU Position: 53 (position.label in template: 53.C) Reactivity: 0.5C Position: 54 (position.label in template: 54.C) Reactivity: 0.5C Position: 55 (position.label in template: 55.G) Reactivity: nanG Position: 56 (position.label in template: 56.U) Reactivity: nanU Position: 57 (position.label in template: 57.G) Reactivity: nanG Position: 58 (position.label in template: 58.C) Reactivity: 0.5C Position: 59 (position.label in template: 59.U) Reactivity: nanU Position: 60 (position.label in template: 60.C) Reactivity: 0C Position: 61 (position.label in template: 61.G) Reactivity: nanG Position: 62 (position.label in template: 62.U) Reactivity: nanU Position: 63 (position.label in template: 63.A) Reactivity: 0.5A Position: 64 (position.label in template: 64.U) Reactivity: nanU Position: 65 (position.label in template: 65.G) Reactivity: nanG Position: 66 (position.label in template: 66.G) Reactivity: nanG Position: 67 (position.label in template: 67.C) Reactivity: 1C Position: 68 (position.label in template: 68.U) Reactivity: nanU Position: 69 (position.label in template: 69.A) Reactivity: 0.5A Position: 70 (position.label in template: 70.C) Reactivity: 0C Position: 71 (position.label in template: 71.U) Reactivity: nanU Position: 72 (position.label in template: 72.A) Reactivity: 0A Position: 73 (position.label in template: 73.A) Reactivity: 0.5A Position: 74 (position.label in template: 74.A) Reactivity: 0A Position: 75 (position.label in template: 75.A) Reactivity: 0A Position: 76 (position.label in template: 76.A) Reactivity: 0A Position: 77 (position.label in template: 77.U) Reactivity: nanU Position: 78 (position.label in template: 78.G) Reactivity: nanG Position: 79 (position.label in template: 79.G) Reactivity: nanG Position: 80 (position.label in template: 80.U) Reactivity: nanU Position: 81 (position.label in template: 81.C) Reactivity: 0C Position: 82 (position.label in template: 82.G) Reactivity: nanG Position: 83 (position.label in template: 83.U) Reactivity: nanU Position: 84 (position.label in template: 84.C) Reactivity: 0.5C Position: 85 (position.label in template: 85.A) Reactivity: 0.5A Position: 86 (position.label in template: 86.G) Reactivity: nanG Position: 87 (position.label in template: 87.G) Reactivity: nanG Position: 88 (position.label in template: 88.U) Reactivity: nanU Position: 89 (position.label in template: 89.U) Reactivity: nanU Position: 90 (position.label in template: 90.C) Reactivity: 0C Position: 91 (position.label in template: 91.U) Reactivity: nanU Position: 92 (position.label in template: 92.G) Reactivity: nanG Position: 93 (position.label in template: 93.G) Reactivity: nanG Position: 94 (position.label in template: 94.C) Reactivity: 0C Position: 95 (position.label in template: 95.A) Reactivity: 0A Position: 96 (position.label in template: 96.C) Reactivity: 0C Position: 97 (position.label in template: 97.G) Reactivity: nanG Position: 98 (position.label in template: 98.U) Reactivity: nanU Position: 99 (position.label in template: 99.C) Reactivity: 1C Position: 100 (position.label in template: 100.G) Reactivity: nanG Position: 101 (position.label in template: 101.U) Reactivity: nanU Position: 102 (position.label in template: 102.C) Reactivity: 0C Position: 103 (position.label in template: 103.G) Reactivity: nanG Position: 104 (position.label in template: 104.U) Reactivity: nanU Position: 105 (position.label in template: 105.G) Reactivity: nanG Position: 106 (position.label in template: 106.C) Reactivity: 0C Position: 107 (position.label in template: 107.U) Reactivity: nanU Position: 108 (position.label in template: 108.A) Reactivity: 0.5A Position: 109 (position.label in template: 109.A) Reactivity: 1A Position: 110 (position.label in template: 110.A) Reactivity: 0A Position: 111 (position.label in template: 111.G) Reactivity: nanG Position: 112 (position.label in template: 112.G) Reactivity: nanG Position: 113 (position.label in template: 113.C) Reactivity: 0C Position: 114 (position.label in template: 114.C) Reactivity: 0C Position: 115 (position.label in template: 115.G) Reactivity: nanG Position: 116 (position.label in template: 116.C) Reactivity: 1C Position: 117 (position.label in template: 117.G) Reactivity: nanG Position: 118 (position.label in template: 118.C) Reactivity: 0.5C Position: 119 (position.label in template: 119.U) Reactivity: nanU Position: 120 (position.label in template: 120.C) Reactivity: 1C Position: 121 (position.label in template: 121.G) Reactivity: nanG Position: 122 (position.label in template: 122.U) Reactivity: nanU Position: 123 (position.label in template: 123.C) Reactivity: 0C Position: 124 (position.label in template: 124.U) Reactivity: nanU Position: 125 (position.label in template: 125.G) Reactivity: nanG Position: 126 (position.label in template: 126.A) Reactivity: 0.5A Position: 127 (position.label in template: 127.C) Reactivity: 0C Position: 128 (position.label in template: 128.C) Reactivity: 0C Position: 129 (position.label in template: 129.G) Reactivity: nanG Position: 130 (position.label in template: 130.U) Reactivity: nanU Position: 131 (position.label in template: 131.U) Reactivity: nanU Position: 132 (position.label in template: 132.U) Reactivity: nanU Position: 133 (position.label in template: 133.C) Reactivity: nanC Position: 134 (position.label in template: 134.U) Reactivity: nanU Position: 135 (position.label in template: 135.A) Reactivity: nanA Position: 136 (position.label in template: 136.A) Reactivity: nanA Position: 137 (position.label in template: 137.G) Reactivity: nanG Position: 138 (position.label in template: 138.U) Reactivity: nanU Position: 139 (position.label in template: 139.A) Reactivity: nanA Position: 140 (position.label in template: 140.A) Reactivity: nanA Position: 141 (position.label in template: 141.U) Reactivity: nanU Position: 142 (position.label in template: 142.A) Reactivity: nanA Position: 143 (position.label in template: 143.A) Reactivity: nanA Position: 144 (position.label in template: 144.A) Reactivity: nanA Position: 145 (position.label in template: 145.G) Reactivity: nanG Position: 146 (position.label in template: 146.C) Reactivity: nanC Position: 147 (position.label in template: 147.U) Reactivity: nanU Position: 148 (position.label in template: 148.A) Reactivity: nanA Position: 149 (position.label in template: 149.A) Reactivity: nanA Position: 150 (position.label in template: 150.C) Reactivity: nanC Position: 151 (position.label in template: 151.C) Reactivity: nanC Position: 152 (position.label in template: 152.C) Reactivity: nanC Position: 153 (position.label in template: 153.C) Reactivity: nanC Position: 154 (position.label in template: 154.U) Reactivity: nanU Position: 155 (position.label in template: 155.G) Reactivity: nanG Position: 156 (position.label in template: 156.A) Reactivity: nanA Position: 157 (position.label in template: 157.G) Reactivity: nanG Position: 158 (position.label in template: 158.U) Reactivity: nanU Position: 159 (position.label in template: 159.G) Reactivity: nanG Position: 160 (position.label in template: 160.G) Reactivity: nanG Position: 161 (position.label in template: 161.U) Reactivity: nanU Position: 162 (position.label in template: 162.U) Reactivity: nanU Position: 163 (position.label in template: 163.A) Reactivity: nanA Position: 164 (position.label in template: 164.A) Reactivity: nanA Position: 165 (position.label in template: 165.G) Reactivity: nanG Position: 166 (position.label in template: 166.3')3' 10 20 30 50 100 150


ysdD-rpmH-rnpA-yidD



Position: 331-455, Conformation: #1







Retained alignments:


   NC_002620.2       AAC...GCACCUAUC.AA...CCUA....GUAAA..A....GAAAAC....GU......AC...AAAU-------ucu......guggGAUUUAGAGCUCGCA.UGGCUACAAAAAGUGG.A.AG...A...A...A...UCU..UU.U...A.A.A.U.CG..UC.G.U....................................................C.G.C.CGU..C..A.C..GGCAGACAUUCCU........UA...AUUG...A.U.C.U......CU.AAG.AUC.....UU......................................UCAUU.U.GU.GC..A.U......C..G-.-..-.-.GUU
   NC_002977.6       AAA...GAACCUAUC.AA...CCAA....GCAAG..A....UCAAGC....GC......GU...GCGCACCCACG.............GCUUCCGCGCCCGCA.UGAAGACCCGCGGCGG.C.CG...C...G...C...CGU..CC.U...CaG.C.G.C-..CC.G.G....................................................C.G.C.GCG..A..A.A..GGGCGCAGAAAGC........UC...UCGG...U.C.-.U......GA.UGG.AAC.....GGcccg..............................uuccCGGCC.A.AG.GG..U.A......C..GG.G..U.U.---
   NC_003103.1       AAC...GUACAUUUC.AA...CCUA....GUAAU..U....UAGUUA....GA......AA...AAGAAGACAUG.............GUUUUAGAUCUAGAA.UGGCUACUCCAACCGG.A.AG...A...G...C...AAU..CU.U...A.A.A.A.AA..AC.G.U....................................................C.G.U.ACU..A..A.A..GGUAGACAUAAAU........UA...UCUG...C.U.U.A......AA.AUA.AUCu...g--......................................---AU.U.UA.UC..A.A......A..UU.G..U.-.---
   NC_003155.5       AGC...GCACCUUCC.AG...CCGA....ACAAC..C....GUCGUC....GC......GC...GAAGACCCACG.............GCUUCCGGCUGCGUA.UGCGCACCCGUGCCGG.C.CG...C...G...C...GAU..UC.U...C.G.C.G.UC..CC.G.C....................................................C.G.U.GGC..A..A.G..GGUCGCGCCAGCC........UG...UCCG...C.C.U.G......AU.CCC.GAUc...a--......................................--GGU.C.AU.GA..C.G......U..--.-..-.-.GCU
   NC_003910.7       AAA...GAACAUUUC.AA...CCUA....GCGUA..U....UAAAGC....GU......AA...GCGUAACCACG.............GAUUCCGUGCUCGUA.UGGCAACUAAAAACGG.A.CG...U...G...C...UGU..UA.U...A.G.C.U.CG..UC.G.U....................................................C.G.U.GCG..A..A.A..GGCCGUGCACGUC........UU...AGCG...C.A.U.A......GU.AUC.AAAu..cu--......................................--UGU.U.UA.CA..A.U......A..--.-..-.-.UUU
   NC_003911.12      AAC...GCACCUAUC.AG...CCUU....CGAAC..C....UGGUUC....GC......AA...ACGCCGCCACG.............GCUUUCGUGCGCGCA.UGGCCACCAAGGCCGG.C.CG...C...A...A...GAU..CC.UgaaC.G.C.A.CG..C-.-.-....................................................C.G.C.GCG..C..G.U..GGCCGCAAGGAAC........UC...AGCG...C.C.U.A......AG.CGC.U--.....--......................................---GC.G.AC.CC..G.U......U..--.-..-.-.---
   NC_004347.2       AAC...GUACUUUUC.AA...CCUA....GCAAC..C....UGAAGC....GC......AA...GCGUUCUCACG.............GCUUCCGCGCUCGUA.UGGCUACUGCAGGCGG.C.CG...U...A...A...GGU..GC.U...U.G.C.A.CG..UC.G.U....................................................C.G.U.GCG..A..A.A..GGUCGCGCUCGUU........UA...UCUG...C.U.U.A......--.AUU.AAGu...g--......................................---GA.U.AA.CU..-.-......A..--.-..-.-.GUU
   NC_004369.1       AGC...GGACGUUCC.AG...CCGA....ACAAC..C....GUCGUC....GU......GC...ACGUGUUCACG.............GCUUCCGUACUCGCA.UGCGCACCCGCGCCGG.C.CG...U...G...C...GAU..UG.U...U.G.C.G.GC..UC.G.U....................................................C.GuC.GCA..-..A.G..GGUCGCGAGAAGC........UG...ACCG...-.C.G.U......AG.UAG.C--.....--gucacca........................auccagg-----.-.UG.UC..A.U......A..AC.G..U.U.GCU
   NC_004556.1       AGC...GUACUUAUC.AA...CCUA....GUAAU..C....UUAAGC....GU......AA...GCGUGAUCAUG.............GCUUUCGUGCUCGUA.UGAGCACCGCAGAUGG.U.CG...U...A...A...AAU..CU.U...A.G.C.U.CG..CC.G.U....................................................C.G.U.GCU..A..A.A..GGCCGUAAGCGUU........UG...AGUG...C.U.U.A......AU.UAA.AUUu...a--.....................................uCCUUU.U.AA.AC..G.C......A..--.-..-.-.GCU
   NC_004603.1       AAC...GCACUUUUC.AA...CCUA....CAGUU..C....UAAAGC....GC......AA...GCGUACUCACG.............GCUUCCGUGCUCGCA.UGGCAACUAAGAACGG.U.CG...U...A...A...AGU..UA.UcaaC.G.C.A.CG..U-.-.-....................................................C.G.U.GCA..A..A.A..GGCCGUGCGCGCC........UA...UC--...-.-.-.-......AA.AAU.AAU.....CG......................................CUAGU.U.UA.UU..U.U......G..--.-..-.-.---
   NC_004917.1       AGA...GAACUUACC.AG...CCAC....--ACA..A....UACACCu..aGA......AA...ACGCACACACG.............GCUUUCGUGCAAGAA.UGAAAACAAAAAAUGG.U.CG...G...C...G...UGU..UA.U...U.AaC.G.C-..--.-.-aa.............gaa..................................-.G.A.GCA..A..A.A..GGUCGUAAAAGGC........UU...UCAG...U.A.U.A......GU.UUU.GU-.....--gca...............................auag---GU.A.AA.UA..U.A......U..--.-..-.U.U--
   NC_005126.1       AAC...GCACUUUCC.AA...CCAU....CCGUA..C....UGAAGC....GU......AA...CCGUUCUCAUG.............GUUUCCGCGCUCGUA.UGGCUACCAAAAAUGG.U.CG...U...C...A...GGU..UC.U...G.G.C.U.CG..CC.G.U....................................................C.G.U.GCA..A..A.A..GGCCGUACUCGUC........UG...ACCG...U.U.U.C......UA.AGU.AAUa..aa--......................................---GC.U.AA.CC..A.U......C..UA.G..U.G.GUU
   NC_005966.1       AAC...GUACUUUCC.AG...CCUU....CGGAA..U....UAAAAC....GU......AA...ACGCGUUCAUG.............GUUUCCGUGCUCGCA.UGGCUACUAAAGCUGG.U.CG...U...C...A...GGU..UU.U...G.G.C.U.CG..CC.G.U....................................................C.G.U.GCU..A..A.A..GGUCGUCACAGCU........UA...ACUG...U.U.U.A......AU.--U.AC-.....GG......................................UUAGU.U.GA.--..-.-......-..--.-..-.-.---
   NC_006055.1       AAA...GAACUUGAC.AA...CCAU....CAAAA..A....UUAAAC....AC......GC...UCGUGUUCACG.............GUUUUAGAGCUAGAA.UGGCUACUAAAAAUGG.A.AG...A...A...A...AGU..UA.UcaaA.G.C.U.C-..--.G.U....................................................A.G.A.GCA..A..A.A..GGUAGAGCUAAAU........UA...ACUG...C.U.U.A......AU.UUU.UUUg...u--......................................---GA.A.AU.GA..A.-......-..--.-..-.-.---
   NC_006138.1       AAA...GAACUUUUC.AG...CCAA....GUAAC..A....UCAAGC....GU......AG...UCGUACCCAUG.............GUUUUCGUGCGCGUA.UGAGCACCCGUGCCGG.U.CG...U..gC...A...AUU..CU.U...A.A.C.G.C-..UC.G.C....................................................A.G.A.GCU..A..A.A..GGACGUAAGAGAC........UU...UCUG...C.-.A.U......AA.UUU.GG-.....--aaaggu.........................aucggcuUCCAA.A.GA.CU..G.C......C..--.-..-.-.UUU
   NC_006177.1       AGC...GCACGUUCC.AG...CCGC....ACAAC..C....GCUCGC....GC......AA...GCGGACGCACG.............GCUUCCUGAGCCGCA.UGAGCACUCGGGGCGG.C.CG...C...A...G...GGU..CC.U...G.A.A.G.GC..CC.G.G....................................................C.G.C.CUG..A..A.G..GGUCGGAAGCGCC........UU...ACCG...U.A.U.A......AG.CC-.---.....GC......................................GAC-G.G.CC.UC..C.C......G..UC.G..U.G.GCU
   NC_006300.1       AAC...GUACAUUUC.AA...CCUU....CUGUA..U....UAAAAC....GU......AG...CCGUACUCACG.............GUUUCCGUGCUCGUA.UGGCAACUAAAAACGG.C.CG...U...C...A...GGU..UU.U...A.G.C.U.CG..UC.G.U....................................................C.G.U.GCU..A..A.A..GGUCGUAAAAGUU........UA...UCCG...C.U.U.A......--.AUU.CC-.....--ugcac...........................auucgu-GUGA.U.UA.A-..-.-......-..--.-..-.-.---
   NC_006513.1       AAC...GCACCUAUC.AG...CCUU....CCGUC..G....UCCGUC....GC......AA...GCGCACCCAUG.............GAUUCCUGGUCCGCA.UGAAGACCCGUGGCGG.U.CG...C...G...C...AGU..GA.U..cC.G.C.G.C-..CC.G.U....................................................C.G.U.GCA..A..A.G..GGCCGUCACCGUC........UC...GCCG...U.U.U.G......AG.GUG.AG-.....--cagccggcc....................gggcguuga-----.-.--.--..-.-......-..--.-..-.-.---
   NC_006526.2       AGC...GCACUUUUC.AG...CCGA....GCAAC..C....UCGUGC....GC......AA...GCGCCGGCACG.............GUUUCCGUACCCGGU.CUGCAACCCCGGGCGG.U.CG...C...A...A...GAU..UC.U...G.G.C.A.GC..CC.G.U....................................................C.G.G.GCU..C..G.C..AGCCGCAAGAAAC........UG...UCCG...C.G.U.A......GC.AGU.UCU.....--uaa...............................gcgcCGCGC.U.GA.UU..U.U......C..UU.G..C.G.GCU
   NC_006908.1       AAA...GAACGUAUC.AA...CCUA....AAAAA..A....GAAAAC....AU......GC...AAAAACACAUG.............GUUUUAGAUCAAGAA.UGGCUACUAAAAAUGG.U.AG...A...A...A...AGU..UU.U...A.A.A.A.UU..AA.G.A....................................................C.G.U.UUA..A..A.A..GGAAGAUAUCAAU........UA...ACUG...U.U.U.C......UG.AUA.AAUa..au--......................................UAAUU.U.AA.--..-.-......-..--.-..-.-.---
   NC_007406.1       AAC...GGACUUAUC.AA...CCCA....GUAAA..U....UGGUAC....GC......AA...GCGGCGUCAUG.............GCUUUCGUGCCCGCC.UCGCGACCACCGGCGG.C.CG...G...A...A...GGU..UC.U...C.G.C.A.GC..GC.G.G....................................................C.G.C.GCG..C..G.G..GGCCGCAAGCGCC........UG...AGCG...C.C.U.G......AG.CGG.AUCg..uu--......................................---CC.G.GG.AA..U.C.....a-..--.-..-.-.---
   NC_007481.1       AAA...GAACUUUUC.AA...CCAA....GCGUU..U....UAAAAC....GC......AA...ACGUGCUCACG.............GUUUCCGUGCUCGCA.UGGCAACUGUAAAUGG.C.CG...U...A...A...AGU..AU.U...A.G.C.U.CG..UC.G.C....................................................C.G.C.GCU..A..A.A..GGCCGUAAAGUUC........UU...UCUG...C.U.U.A......-A.UUU.A-Ua..ag--......................................-----.U.GG.AA..G.A......C..--.-..-.-.UUU
   NC_007484.1       AAC...GUACCUUCC.AA...CCUA....AAAAU..U....UAAAGC....GC......AA...ACGUACUCAUG.............GGUUUCGUGCCCGGA.UGCGAACUCAAGGGGG.G.CG...C...G...C...UAU..UA.U...U.A.A.C.AG..GC.G.G....................................................C.G.C.GCC..A..A.G..GGGCGGAAGCGCC........UU...ACUG...C.U.U.A......AG.---.---.....CA......................................CG---.C.AC.AG..C.C......C..AG.G..U.A.GUU
   NC_007510.1       AAC...GUACUUACC.AA...CCGU....CCGUG..A....CGCGCC....GC......AA...GCGCACCCAUG.............GCUUCCGCGUCCGUA.UGAAGACGGCAGGUGG.C.CG...C...A...A...GGU..CA.UcaaC.G.C.U.CG..--.-.U....................................................C.G.C.GCG..A..A.G..GGCCGCAAGCGCC........UG...GCCA...U.C.U.A......AG.GCA.GG-.....--uugcg...........................cgcugu-----.-.--.--..-.-......-..--.-..-.-.---
   NC_007517.1       AAA...GGACCUUUC.AG...CCCA...gCAACA..C....UU-CCC....GG......AA...GCGCACCCACG.............GCUUCCGUGUCCGUA.UGUCCACCAAGAACGG.C.CG...G...C...U...CGU..CA.U...C.A.A.G.CG..UC.G.U....................................................C.G.U.GCC..A..G.G..GGGCGUAAGCGUC........UU...GCUG...-.-.-.-......UG.ACC.AUC....g--ccg................................gca---AG.U.AA.UC..C.U......C..CG.G..U.U.---
   NC_007530.2       AAA...GAACUUACC.AA...CCAA....AUAAA..C....GUAAGC....GC......AG...CAAAGUACAUG.............GUUUCCGCAGCCGUA.UGAGCACAGCAAACGG.A.CG...U...A...A...AGU..GC.U...A.G.C.A.GC..UC.G.U....................................................C.G.U.CGU..A..A.A..GGAAGAAAAGUAU........UA...UCUG...C.G.U.Ag....aCC.ACU.GAU.....--cg..................................uu--CAG.U.GG.UC..U.U......U..--.-..-.-.UUU
   NC_007633.1       AAA...GAACUUGAC.AA...CCAU....CAAAA..U....UAAAAC....AU......GC...ACGUGUUCAUG.............GUUUUAGAGCAAGAA.UGGCUACUAAAAAUGG.U.AG...A...A...A...AGU..AA.UuaaA.G.C.U.C-..--.G.U....................................................A.G.A.GCU..A..A.A..GGUAGAGUUAGAU........UA...UCUG...C.U.U.A.....aUA.AUU.UAU....g--......................................---AA.A.AA.C-..-.-......-..--.-..-.-.---
   NC_007712.1       AAC...GCACUUUCC.AA...CCGU....CCGUA..U....UGAAAC....GC......AA...CCGUUCCCACG.............GUUUCCGUGCUCGUA.UGGCAACGAAGAACGG.U.CG...U...C...A...GGU..UU.U...G.G.C.A.CG..UC.G.U....................................................C.G.U.GCA..A..A.A..GGCCGUACACGCC........UG...ACCU...U.A.U.C......UU.CCA.AGU....a--ag.................................aaa--GCU.U.GC.CC..A.C......C..GG.G..U.G.GUU
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   NC_010681.1       AAC...GUACUUACC.AA...CCUU....CCGUU..A....CCCGUC....GC......AA...GCGCACCCACG.............GCUUCCGCGUUCGCA.UGAAGACCGCAGGUGG.C.CG...C...A...A...GGU..CA.UcaaC.G.C.A.CG..C-.-.-....................................................C.G.C.GCG..A..A.G..GGCCGCAAGCGCC........UC...GCCA...U.C.U.A......AG.GCA.G--.....--gcguugcac...................gcgacgcuua-----.-.--.--..-.-......-..--.-..-.-.---
   NC_010694.1       AAC...GCACUUUUC.AA...CCGU....CCGUA..C....UGAAGC....GU......AA...CCGUUCACACG.............GUUUCCGUGCUCGUA.UGGCAAAUAAAAAUGG.U.CG...U...C...A...GGU..UC.U...G.G.C.A.CG..UC.G.U....................................................C.G.U.GCU..A..A.A..GGCCGUUCUCGUC........UG...ACCG...U.U.U.C......UA.AGU.AAUaa.aa--......................................---GC.U.AA.CC..G.C......U..GA.G..U.G.GUU
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   NC_010729.1       AAA...GAACAUAUC.AA...CCCU....CUAAC..C....GUAAGA....GA......CU...GAACAAGCAUG.............GCUUUCGCUCUCGUA.UGGCAACGGCAAAUGG.C.CG...U...C...G...UGU..AU.U...G.G.C.-.CG.cUC.G.C....................................................C.G.U.GCA..A..A.A..GGCCGUGCCAAAC........UG...ACCG...U.U.U.C......UG.ACG.AAU....u--......................................---CG.U.AG.GC..U.A......A..--.-..-.-.---
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   NZ_AP025472.1     AAC...GCACUUUUC.AA...CCUA....CAGUU..C....UAAAGC....GC......AA...GCGUUCACACG.............GUUUCCGUGCUCGCA.UGGCGACUAAGAACGG.C.CG...CgcaA...C...AAU..CA.A...U.G.C.A.CG..U-.-.-....................................................C.G.U.GCA..A..A.A..GGCCGUAAGCGCC........UU...UCA-...-.-.-.-......AA.AUA.AUUaa.au--......................................---UA.U.UU.UG..A.-......-..--.-..-.-.---
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   NZ_AP025559.1     AGA...GGACAUAUC.AA...CCUU....CGGUA..A....GGAAAA....AG......AA...GAAUAAGCACG.............GCUUCCGUGCUCGUA.UGGCUACCGCAAAUGG.U.AG...A...C...G...UGU..AC.U...A.G.C.A.GC..UC.G.U....................................................C.G.U.GCU..A..A.G..GGACGUGCUAGAC........UG...ACUG...U.U.U.C......UG.AGU.AAA.....AUcuagga..........................agcagcAGGAC.U.UC.UU..C.-......-..--.-..-.-.---
   NZ_AP025628.1     AGC...GUACCUACC.AG...CCGA....GCAAC..C....UGCGGC....GG......AA...GCGAACCCACG.............GGUUCCGGAAGCGCA.UGCGGACGUCCGGCGG.G.CG...G...A...G...GGU..CC.U...G.A.A.G.GC..CC.G.G....................................................C.G.G.CUG..A..A.G..GGAAGAAAGCGAC........UU...ACCG...U.U.U.A......GG.CCG.---.....--......................................---CG.G.CA.CA..C.A......A..--.-..-.-.GCU
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   NZ_CP004078.1     GAC...CGACGUUCA.AA...CCGA....AUGUA..A....GCAAGC....GC......AA...GAAGGUGCACG.............GGUUUCGCGCAAGAA.UGAGCACGAAAAACGG.C.CG...U...A...A...AGU..GC.U...G.G.C.U.GC..UC.G.C....................................................C.G.C.CUG..A..A.A..GGCAGAAAAGUUC........UG...AGUG...C.G.U.A......AG.UCA.G--.....--gc.................................caa---UA.A.GA.CC..A.C......U..GC.G.gU.G.GUC
   NZ_CP004353.1     AGC...GGACGUUCC.AG...CCGA....ACAAC..C....GUCGUC....GC......GC...ACGUAAGCACG.............GCUUCCGUACCCGCA.UGGCAACCCGUGCUGG.U.CG...C...G...C...AAU..CG.U...G.G.C.U.GC..AC.G.U....................................................C.G.U.CGC..A..A.G..GGUCGCGAGAAGC........UG...AGCG...C.C.U.A......GU.ACG.CG-.....--cc..................................ag----A.U.UC.UU..C.A......C..GC.G..U.C.---
   NZ_CP004387.1     AAC...GUACUUUUC.AA...CCGA....GCCAA..A....UCAAGC....GC......AA...GCGCACCCAUG.............GCUUCCGUGCCCGCA.UGGCCACCAAAAACGG.C.CG...C...G...C...UGU..AC.U...G.A.A.C.CG..UC.G.C....................................................C.G.C.GCC..A..A.G..GGCCGCAAGCAGC........UG...ACCG...U.-.-.C......UG.AAG.---.....UCggcu.............................guuug---CU.U.CA.CU..U.G......U..--.-..-.-.---
   NZ_CP004393.1     AAC...GCACCUAUC.AA...CCGA....GCAAC..C....UCGUCC....GC......AA...GCGCCGCCACG.............GCUUCCGUGCCCGUA.UGGCGACCAAAGCCGG.C.CG...C...A...A...GGU..UC.U...GaA.C.G.CG..-C.G.U....................................................C.G.C.GCC..C..G.C..GGCCGCAAGUCCC........UC...UCCG...C.G.U.A......AG.CCG.CGUc..ca--......................................---GG.G.AU.CG..C.C.....u-..--.-..-.-.---
   NZ_CP005974.1     AAC...GCACUUUUC.AA...CCUU....CAGUU..C....UAAAGC....GC......AA...GCGUACUCACG.............GCUUCCGUGCACGCA.UGGCUACUAAGAACGG.U.CGcgcA...A...C...AAU..CA.A...U.G.C.U.CG..U-.-.-....................................................C.G.C.GCU..A..A.A..GGCCGUAAGCGUC........UU...----...-.-.U.C......UA.AGU.AAU....c--......................................---GC.U.AG.AU..U.A......U..--.-..-.-.---
   NZ_CP006569.1     AAC...GCACUUUCC.AA...CCGU....CCGUA..U....UGAAAC....GC......AA...CCGUACCCACG.............GUUUCCGUGCUCGUA.UGGCAACGAAGAACGG.U.CG...U...C...A...GGU..UU.U...G.G.C.A.CG..UC.G.C....................................................C.G.U.GCA..A..A.A..GGCCGUACACGCC........UG...ACCG...U.A.U.C......UU.CCA.AGU....a--ag.................................aaa--GCU.U.GC.CC..A.C......C..GG.G..U.G.GUU
   NZ_CP006644.1     AGC...GCACCUUUC.AG...CCCA....GCAAG..C....UCGUGC....GG......GC...CCGCCGUCACG.............GCUUCCGGUCGCGCA.GCGCGACUGUCGGGGG.C.CG...C...A...A...GGU..UU.U...-.G.C.G.CG.cCC.G.U....................................................C.G.C.GCC..C..G.C..GGCCGCAACAAGC........UG...UCCG...C.C.U.G......AA.CCG.GAU.....CAcgc................................gccGCACG.G.AU.UA..U.C......U..--.-..-.-.---
   NZ_CP006694.1     AAA...GAAAUUACC.AG...CCCA...gCCGAG..U....UAAA-A....GA......GC...AAGAACGCACG.............GGUUCCGUGCGAGAA.UGGCUACUGCUGGUGG.A.AG...A...A...A...GGU..UC.U...U.U.C.A.CG..CA.G.A....................................................A.G.A.AAA..A..A.G..GGCAGAUAUAAAU........UG...ACCG...U.U.U.C......CG.ACG.AAA.....AA......................................CUCGG.U.AA.AA..A.A......U..--.-..-.-.AUU
   NZ_CP006828.1     AAA...GAACAUUUC.AA...CCAU....CUAAU..A....GAAAAA....GA......AG...AAACAAACACG.............GUUUUAGAGAAAGAA.UGUCUACUAAAAACGG.A.AG...A...A...A...AGU..AU.U...G.G.C.A.AG..AA.G.A....................................................A.G.A.GCU..A..A.A..GGUAGAAAAAGAU........UA...ACCG...U.G.A.G......UU.CUG.U--.....--ucg...............................ugca-----.A.AA.AG..A.U......A..AU.-..-.-.UUU
   NZ_CP006877.1     AGC...GUACCUACC.AA...CCAU....CGAAG..C....UUGUCC....GC......AA...GCGCCGCCACG.............GUUUCCGUGCGCGUA.UGGCUACCAAGGGCGG.C.CG...C...A...A...GGU..CA.U...C.G.U.U.GC..CC.G.C....................................................C.G.C.GCG..C..G.U..GGCCGCAAGCGUC........UU...UCGG...C.C.U.A......AG.GCC.GG-.....--agugcccga....................uaacagaugGCGGG.C.GA.A-..-.-......-..--.-..-.-.---
   NZ_CP006934.1     AAA...GAACAUGAC.AA...CCAA....GUAAA..A....UCAAAC....AU......GC...GAGAACUCACG.............GUUUUAGAGCUAGAA.UGGCUACAAAAAACGG.U.AG...A...A...A...AAU..CG.UuaaA.G.C.A.CG..U-.-.-....................................................C.G.C.GCU..A..A.A..GGCAGAGCUAGAU........UA...ACAG...C.U.U.A......AU.GAC.AAA.....U-gcuaaaa.......................aacuccguAUUGU.-.--.--..-.-......-..--.-..-.-.---
   NZ_CP006944.1     AAC...GUACAUUUC.AA...CCAU....CAGUA..U....UAAAAC....GU......GC...UCGUACACACG.............GUUUCCGUGCUCGUA.UGGCUACUAAAAACGG.U.CG...U...C...A...AGU..AU.U...A.G.C.A.CG..UC.G.U....................................................C.G.U.GCU..A..A.A..GGUCGUAAAUCUU........UA...UCUG...C.A.U.A......AU.UGC.---.....--agaaucagc...................caaaacaccu-----.-.--.--..-.-......-..--.-..-.-.---
   NZ_CP006954.1     AAC...GUACAUUUC.AA...CCAU....CUGUA..U....UAAAAC....GU......GC...UCGUACUCACG.............GUUUCCGUGCUCGUA.UGGCAACUAAAAACGG.U.CG...U...C...A...AGU..UU.U...A.G.C.A.CG..UC.G.U....................................................C.G.U.GCA..A..A.A..GGUCGUAAAUCUU........UA...UCUG...C.A.U.A......AU.UGU.A--.....--gauga...........................agccag-----.-.--.--..-.-......-..--.-..-.-.---
   NZ_CP007039.1     AAC...GUACUUUCC.AA...CCCA....GCACA..A....UCAAGC....GC......GC...CCGCACCCACG.............GUUUCCGUGCCCGUA.UGGCCACCAAGAACGG.C.CG...U...G...C...AGU..CC.U...G.U.C.G.CG..UC.G.U....................................................C.G.C.GCC..A..A.A..GGCCGUAAGCGUC........UG...GCAG...U.-.-.U......UG.AUA.AAU.....CGgcacug.........................gugguga-----.-.--.--..-.-......-..--.-..-.-.---
   NZ_CP007044.2     AAC...GCACUUUCC.AA...CCGU....CCGUA..U....UGAAGC....GC......AA...CCGUAGCCACG.............GUUUCCGUGCUCGUA.UGGCCACCAAAAAUGG.U.CG...U...C...A...AGU..UC.U...G.G.C.C.CG..CC.G.U....................................................C.G.G.GCG..A..A.A..GGCCGUACUCGUU........UG...ACCG...U.U.U.C......UA.AGU.AAUaa.aa--......................................---GC.U.AA.CC..CgC......U..GA.G..U.G.GUU
   NZ_CP007139.1     AGC...GCACCUAUC.AG...CCUA....ACAAG..C....GCCACC....GC......AG...CACCACGCACG.............GAUUCCGUGUUCGUA.UGCGCACGACCGACGG.U.CA...G...A...A...CGU..CC.U...G.A.A.G.CG..CC.G.A....................................................C.G.C.GUG..A..A.A..GGGCGCCACAAGC........UG...UCCG...C.C.U.G......AA.ACU.AAA....a--......................................---GG.U.CC.GA..C.C......A..AG.G..C.G.---
   NZ_CP007142.1     AAA...GAACAUUUC.AA...CCAA....GCAAU..C....UGAAGC....GU......AA...ACGUACUCACG.............GUUUCCGUGCCCGUA.UGGCUACUGCCAAUGG.U.CG...C...C...A...AGU..CU.U...G.G.C.U.CG..UC.G.U....................................................C.G.U.GCC..A..A.G..GGUCGUAAGGUUU........UA...UCUG..cC.U.G.A......UU.---.UUU....uC-.....................................aGCUGA.U.AA.CC..G.A......U..--.-..-.-.---
   NZ_CP007145.1     AAC...GUACUUUUC.AG...CCCU....CGCAG..C....GCAAGC....GC......CG...CAACAAGCACG.............GUUUCCGCUCGCGCA.UGGAAACCGUAAACGG.C.CG...U...A...G...CGU..AA.U...C.G.C.U.CG..UC.G.U....................................................C.G.U.GCC..A..A.A..GGCCGCAAGCGCC........UG...ACCG...U.A.U.C......UG.ACG.AAGg...u--......................................---CG.U.CA.UA..A.G......C..--.-..-.-.GCU
   NZ_CP007151.1     AGA...GAACGUUUC.AA...CCAA....GCGUC..C....UGAAGC....GU......AA...GCGCGUACACG.............GUUUCCGUGCCCGUA.UGGCCACUGCCAACGG.U.CG...C...A...A...GGU..UA.U...U.U.C.C.CG..UC.G.U....................................................C.G.U.GCC..A..A.A..GGCCGCGCACGUC........UG...UCAG...C.-.G.-......UA.ACC.AG-.....--cgcgc...........................cucaug-----.A.AG.GC..U.U......U..GA.G..U.U.UC-
   NZ_CP007154.1     AAA...GAACAUAUC.AA...CCCA....AUAAA..C....UAAAAC....AC......AU...UAAAACCCAUG.............GGUUUAGAAGUAGAA.UGAAAACUGCUGAUGG.U.AG...A...A...A...AGU..UC.U...U.U.C.U.UU..GC.G.U....................................................A.G.A.UUA..A..A.A..GGGAGAAAGAGAU........UA...ACUG...U.U.U.C......AG.AUA.AAUa...a--......................................UAUUU.G.GA.AU..U.A......U..--.-..-.-.UUU
   NZ_CP007155.1     AGC...GCACCUUCC.AG...CCCA....ACAAC..C....GUCGUC....GC......GC...GAAGACCCACG.............GGUUCCGGCUGCGCA.UGCGGACCCGCGCGGG.C.CG...C...G...C...GAU..CC.U..cG.C.C.G.CG..-C.G.C....................................................C.G.C.GGC..A..A.G..GGCCGCGACCGCC........UG...UCC-...G.C.C.U......GA.-UC.CAGg...c--......................................CGAGA.U.CA.--..-.-......-..--.-..-.-.---
   NZ_CP007201.1     AAA...GAACGUAUC.AG...CCAC....AUAG-..-....UACACCu..aAA......AA...ACGCACUCACG.............GCUUCAGACUUAGAA.UGAAAACUAAGGGCGG.A.CG...U...A...A...AGU..UA.U...C.G.C.A.GC..AC.G.U....................................................C.G.U.GCU..A..A.A..GGUAGAAGCAGAU........UG...GCCG...U.U.U.A......AA.GGA.-U-.....--uaugaaacucuca...........aggcaacgagagag-----.-.UA.UU..C.A......U..AC.G..U.U.---
   NZ_CP007212.1     AAC...GUACCUACC.AA...CCUU....CCGUG..A....CGCGCC....GU......AA...GCGCACCCAUG.............GCUUCCGCGUUCGCA.UGAAGACGGCGGGUGG.C.CG...C...A...A...GGU..CA.UcaaC.G.C.G.CG..C-.-.-....................................................C.G.U.GCG..A..A.G..GGCCGCAAGCGCC........UC...GCCA...U.C.U.A......AG.GCC.---.....--gggcg...........................aagcgc-----.-.--.--..-.-......-..--.-..-.-.---
   NZ_CP007220.1     AGC...GGACCUUCC.AG...CCAA....ACAAU..C....GGCGUC....GC......GC...GCGUACCCACG.............GUUUCCGGUUGCGCA.UGCGCACCCGCGCCGG.U.CG...C...G...C...AAU..CA.U...U.G.C.G.GU..CC.GgC....................................................G.U.C.G-U..A..A.G..GGCCGCAAGGAAC........UG...ACCG...C.C.U.G......AG.UUU.---.....--cgggcgca......................gguaggua-----.-.--.--..-.-......-..--.-..-.-.---
   NZ_CP007230.1     AAC...GCACUUUCC.AA...CCGU....CCGUA..U....UGAAGC....GC......AA...CCGUAGCCACG.............GUUUCCGUGCUCGUA.UGGCCACAAAAAAUGG.U.CG...U...C...A...AGU..UC.U...G.G.C.U.CG..CC.G.U....................................................C.G.U.GCG..A..A.A..AGCCGUUCUCGUC........UG...ACUG...U.U.U.C......UA.AGU.AAUaa.aa--......................................---GC.U.AA.CC..AuC......U..CA.G..U.G.GUU
   NZ_CP007445.1     AAC...GCACAUUUC.AA...CCAU....CAGUA..U....UAAAAC....GC......AA...UAGAACUCACG.............GUUUCCGUGCUCGUA.UGGCAACAAAAAACGG.U.CG...U...C...A...AGU..UC.U...U.G.C.U.CG..CC.G.U....................................................C.G.U.GCU..A..A.A..GGCCGUGUUCGUU........UA...ACUG...U.U.G.C......UA.GCU.GAU.....UUaa..................................agUUGAG.U.GA.UU..A.A......-..--.-..-.-.---
   NZ_CP007470.1     AAC...GUACAUUUC.AA...CCUU....CUGUA..U....UAAAAC....GU......AG...UCGUACUCACG.............GUUUCCGUGCUCGUA.UGGCAACUAAAAAUGG.C.CG...U...C...A...AGU..UU.U...A.G.C.G.CG..UC.G.C....................................................C.G.U.GCU..A..A.A..GGUCGUAAAAGUU........UA...UCUG...C.A.U.A......AU.CAC.AAU.....UC......................................UUAGU.G.GU.UA..A.-......-..--.-..-.-.---
   NZ_CP007496.1     AGC...GAACAUUUC.AA...CCAC....ACACU..C....GACAUC....GU......GC...AAGGACGCACG.............GUUUUAGAGCGCGAG.UUUCUACUAAGGCCGG.U.AG...G...A...U...GGU..CU.U...G.A.A.G.CG..AC.G.C....................................................C.G.U.UUG..A..A.G..GGUCGUGCUAAAA........UU...GCUA...-.-.-.-......--.UUU.AAU.....CUag.................................cga-AUAA.A.AA.AU..-.-......-..--.-..-.-.---
   NZ_CP007501.1     AAA...GAACAUACC.AA...CCCU....CAGUA..A....CACGUC....GC......AA...ACGCACACACG.............GAUUUCGUAUUCGUA.UGAAAACCAAGAGUGG.A.CG...C...G...C...GGU..AU.UaaaU.G.C.C.CG..U-.-.-....................................................C.G.C.GCC..A..A.A..GGUCGCAAACGUC........UG...GCUG...U.U.U.A......AU.--U.UA-.....--gcaguugaauagc...........gccaggauuucuga-----.-.--.--..-.-......-..--.-..-.-.---
   NZ_CP007511.1     AAC...GCACUUUCC.AA...CCCA....GCACC..A....UCAAGC....GC......GC...UCGUACCCAUG.............GUUUCCGUGCCCGCA.UGGCUACCAAGAAUGG.U.CG...U...C...A...GGU..UC.U...G.U.C.G.CG..UC.G.C....................................................C.G.C.GCC..A..A.G..GGCCGUAAGCGCC........UG...ACCG...U.-.-.C......UG.AAC.C--.....--ugcuu...........................gaggug-----.-.--.--..-.-......-..--.-..-.-.---
   NZ_CP007585.1     AAC...GAACUUACC.AA...CCCA....AUAAA..U....UAAAAC....AU......GU...UAAAACCCAUG.............GAUUCCGAGCUCGUA.UGUCGACCGCAGAUGG.A.AG...A...A...A...AGU..UC.U...U.G.C.U.GC..GC.G.A....................................................A.G.A.GCG..A..A.A..GGCCGUAAAAGAU........UA...ACAG...U.A.U.C......AG.AUA.AAUa...a--......................................UUUUU.U.GA.GA..-.U......A..--.-..-.-.GUU
   NZ_CP007793.1     AAC...GCACGUUCC.AG...CCCA....GCAAA..A....UCGUGC....GC......AA...GCGCCGGCAUG.............GCUUCCGCGCCCGCA.UGGCGACCGUCGGUGG.C.CG...C...A...A...GGU..GA.U...U.G.C.C.CG..CC.G.U....................................................C.G.C.GCC..A..A.G..GGCCGCAGUGUCC........UG...AGCG..cC.U.G.A......UA.CGC.AUG....g--......................................-CGGC.G.--.--..-.-......-..--.-..-.-.---
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   NZ_CP051772.1     AGC...GUACCUACC.AA...CCGU....CCAAA..C....UCGUCC....GC......AA...ACGCCGGCACG.............GUUUCCGUGCCCGCA.UGGCCACCAAGGGUGG.U.CG...U...G...G...CGU..CG.U...C.G.C.A.GC..UC.G.C....................................................-.-.C.GCA..AccG.C..GGCCGCAAGCGGC........UU...AGCG...C.C.U.A......AG.CGA.GACg...a--......................................-UAUC.G.UU.GC..C.C......G..--.-..-.-.---
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   NZ_CP053096.1     UAA...GAACAUACC.AA...CCAA....ACAAA..A....GAAAAC....AC......GU...UAAAACACAUG.............GUUUUCGUGCAAGAA.UGGCUACAGCUAACGG.A.CG...U...A...A...AGU..UU.U...A.G.C.U.GC..CA.G.A....................................................A.G.A.GCU..A..A.A..GGUAGAGCUAGAU........UA...ACUG...U.A.-.U......CG.GAC.AAUa...a--cu..................................aaUUUAU.C.--.UA..U.U......U..AG.G..U.U.UUA
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   NZ_CP072425.1     AAA...GAACUUUUC.AA...CCUA....GCGUU..C....UUAAAC....GC......AA...GCGUACUCACG.............GUUUCCGUGCACGUA.UGGCAACGAAGAAUGG.C.CG...U...A...A...AGU..AC.U...A.G.C.G.CG..UC.G.U....................................................C.G.U.GCU..A..G.A..GGCCGUAAAGUAC........UU...UCUG...C.U.U.A......AU.AUA.UA-.....--aguggaa.......................gacuuuag-----.-.--.--..-.-......-..--.-..-.-.---
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   NZ_CP072888.1     AAA...GAACUUAUC.AA...CCAA....AUAAA..C....GUAAAC....GU......CA...AAAAGUUCAUG.............GAUUCCGUAAACGCA.UGAGCACUAAAAACGG.C.CG...U...C...G...CGU..AU.U...A.G.C.A.AG..CC.G.U....................................................C.G.U.CGU..A..A.A..GGAAGAAAAGUAC........UU...GCUG...C.U.U.A......-A.GCC.ACUg..cc--g...................................gu-----.-.CA.GU..-.-......-..GG.U..U.-.UUU
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   NZ_CP072931.1     AGC...GCACCUUCC.AG...CCGA....ACAAC..C....GCCGCC....GC......GC...GAAGACCCACG.............GCUUCCGUCUGCGCA.UGCGGACCCGUGCCGG.C.CG...C...G...C...GAU..UC.U...C.G.C.G.UC..CC.G.C....................................................C.G.U.GGC..A..A.G..GGUCGCGCCCGUC........UG...UCUG...C.C.U.G......AG.CAG.C--.....--......................................---CU.G.AA.CC..U.-......-..AG.G..U.-.---
   NZ_CP072983.1     AGA...GAACUUACC.AA...CCAA....AGAAA..C....GUCAUC....GU......UC...ACGUGUUCACG.............GUUUUAUGAAGCGUA.UGAGCACAUCAAAUGG.C.CG...C...A...A...GGU..UU.U...A.G.C.A.AG..AC.G.A....................................................C.G.U.GCA..A..A.G..GGUAGAAAAGUCU........UA...UCUG...C.U.U.A......AA.CCA.CU-.....--gaa................................ucuCAGUG.G.UU.UU..U.U......U..AG.-..-.-.UCU
   NZ_CP072994.1     AGC...GCACGUUCC.AA...CCCA....GCAAC..C....GCGUCC....GC......AA...AAACCGUCACG.............GUUUCCGUGCCCGUA.UGGCGACGCCGUCUGG.C.CG...C...A...A...GAU..CA.U..cA.A.C.G.C-..CC.G.C....................................................C.G.C.GCA..A..A.A..GGCCGGGCCAAGC........UG...AGCG...C.G.U.Aa...gcGC.GUC.ACUu...g--a....................................c---GA.U.GA.CC..G.A......C..AU.G..-.-.---
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   NZ_LT615367.1     AAC...GCACUUUCC.AA...CCGU....CCGUA..U....UGAAGC....GU......AA...CCGUAGCCACG.............GUUUCCGUGCUCGUA.UGGCCACUAAAAAUGG.U.CG...U...C...A...GGU..UC.U...G.G.C.C.CG..CC.G.U....................................................C.G.U.GCG..A..A.A..GGCCGUACUCGUC........UG...ACUG...U.U.U.C......CA.AGU.AAUaa.aa--......................................---GC.U.AA.CC..CaC......C..GA.G..U.G.GUU
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   NZ_LT635455.1     AGC...GUACCUACC.AG...CCCA....ACAAG..C....GCAAGC....GC......GC...CACCACGCACG.............GCUUCCGUGCCCGCA.UGGCCACCAAGGGCGG.C.CG...C...G...C...CGU..CC.U...C.G.C.C.CG..UC.G.U....................................................C.G.C.GCG..A..A.G..GGCCGCAAGCGCC........UG...ACCG...U.G.U.A......-G.CGA.C--.....--gugcgaug......................aggaccau-----.C.AA.GU..C.A......A..GG.-..-.-.GCU
   NZ_LT635457.1     AGC...GGACUUAUC.AG...CCGA....ACAAC..C....GUCGUC....GU......UC...CAAGACGCACG.............GCUUCCGCCUGCGUA.UGAGCACCCGCGCUGG.C.CG...C...G...C...GAU..UC.U..gG.C.U.G.CG..-C.G.U....................................................C.G.U.CGC..A..A.G..GGCCGCGCCCGCC........UC...UCCG...C.C.U.G......AG.CUU.UCG....c--......................................---GA.G.--.--..-.-......-..GU.G..U.U.GC-
   NZ_LT821227.1     AAA...GAACAUAUC.AA...CCAA....AUAUA..C....GUAAAA....GA......GC...AAAAUGCCACG.............GAUUUAGAUCAAGAA.UGGCAACUAAAGGCGG.C.CA...G...A...A...AGU..GC.U...U.G.C.A.AG..AA.G.A....................................................C.G.U.GCG..A..A.A..GGCCGUAAAGUUU........UA...AGUG...U.U.U.A......-A.CAC.AAUa..aa--g....................................aGAAGU.G.AU.--..-.-......-..--.-..-.-.---
   NZ_LT828648.1     CAU...UUACCUUUC.AAcagCCGU....CAAAU..U....UGAAGA....AG......AA...GCGUGAGCACG.............GGUUCCGCAAACGUA.UGUCGACCAAGAACGG.U.CG...C...A...A...GGU..AU.U...G.G.C.U.CG..CC.G.U....................................................C.G.U.GCC..A..A.G..GGGCGGGCUCGAU........UG...ACCG...U.G.U.A......-G.CUG.AAG.....--auccggccagg................auaccgccgag-----.-.--.--..-.-......-..--.-..-.-.---
   NZ_LT853882.1     AGC...GUACUUUCC.AA...CCCA....GCAAC..C....UCAAGC....GA......GC...ACGCGACCAUG.............GCUUCCGCGCACGUA.UGGCAACUGCCGAUGG.C.CG...C...A...A...GAU..CC.U...G.G.C.U.CG..CC.G.C....................................................C.G.C.GCC..A..A.G..GGCCGCAAGCGCC........UG...AGCG..cU.U.G.A......UU.GCC.---.....--gcgcc............................gcucc-----.-.--.--..-.-......-..--.-..-.-.---
   NZ_LT855380.1     AAC...GUACUUUCC.AA...CCCA....GCACU..A....UCAAGC....GC......GC...CCGCACCCACG.............GUUUCCGUGCACGUA.UGGCCACCAAAAACGG.C.CG...U...G...C...CGU..UC.U...G.U.C.G.CG..UC.G.U....................................................C.G.C.GCC..A..A.A..GGCCGUAAGCGUC........UG...GCAG...U.-.-.U......UG.AUA.AAU.....CGgcacaggag....................gugagucga-----.-.--.--..-.-......-..--.-..-.-.---
   NZ_LT897836.1     AAC...GUACUUUUC.AA...CCUU....CUGUA..U....UGAAAC....GC......AA...UCGUACCCACG.............GUUUCCGUGCUCGGA.UGGCAACGAAGAACGG.U.CG...U...C...A...GGU..AU.U...G.G.C.U.CG..UC.G.C....................................................C.G.U.UCA..A..A.A..GGUCGUACACGUU........UG...ACCG...U.A.U.C......UU.UCC.AAU.....AAga.................................aag---AU.U.AU.UA..A.U......C..AG.G..U.G.GUU
   NZ_LT906435.1     AAC...GUACUUUUC.AG...CCUU....CCGUG..A....CGCGCC....GC......AA...GCGCACCCAUG.............GCUUCCUGGUUCGCA.UGAAGACCCGUGGCGG.C.CG...C...A...A...GGU..CA.U...C.G.C.-.CG.cUC.G.U....................................................C.G.C.GCC..A..A.G..GGCCGUAAGCGCC........UG...GCCG...U.C.U.A......AU.CGC.GGU.....U-cucggucgu....................accgcgguuUGCGC.G.UU.AA..-.-......-..--.-..-.-.---
   NZ_LT906462.1     AAC...GUACGUAUC.AA...CCAA....AUAAA..C....GUAAAC....AC......AG...UAAAGUUCAUG.............GCUUCCGUGCACGUA.UGAGCUCAAAAAACGG.U.CG...U...A...G...AGU..AU.U...A.G.C.U.CG..UC.G.U....................................................C.G.U.CGU..A..A.A..GGUAGAAAAGUAU........UA...UCAG...C.U.U.A......--.AGA.---.....UCacugaa.........................gagcagu-GGUC.U.UU.UU..U.U......U..--.-..-.-.GUU
   NZ_LT906463.1     AAC...GUACAUUUC.AA...CCUU....CCGUA..U....UAAAAC....GU......AA...CCGUACUCACG.............GUUUCCGUGCACGUA.UGGCAACUAAAAACGG.C.CG...U...C...A...AGU..UU.U...A.G.C.U.CG..UC.G.U....................................................C.G.U.GCU..A..A.A..GGUCGUAAGAGUU........UA...UCUG...C.A.U.A......AU.CGC.GUUu...c--......................................---GU.G.AU.UG..C.U.....u-..--.-..-.-.---
   NZ_OU015430.1     AGC...GCACCUAUC.AG...CCCA....GCAAC..C....UCAAGC....GC......AA...GCGCGACCACG.............GCUUCCGUGCCCGCA.UGGCGACCGCCGACGG.C.CG...C...A...A...GAU..CC.U...C.G.C.G.CG..UC.G.C....................................................C.G.C.GCC..A..A.G..GGCCGCAAGCGUC........UC...UGCG...C.C.-.-......UG.AUC.ACCa...c--g...................................uuGCCGG.U.U-.--..-.-......-..--.-..-.-.---
   NZ_OU343031.1     AAC...GUACCUAUC.AA...CCGU....CCGUGacC....UCUA--....GA......AA...ACGCACCCACG.............GCUUCCGCAUUCGCA.UGAAGACCGCUGGCGG.C.CG...U...A...G...AGU..UA.UuaaC.G.C.G.CG..C-.-.-....................................................C.G.C.GCG..A..A.A..GGUCGUAAAAGGC........UA...ACCG...U.C.U.A......AG.--U.AAUc..ga--......................................-UAGU.U.GU.--..-.-......-..--.-..-.-.---
   NZ_OU594967.1     AAC...GUACAUUUC.AA...CCAA....GCGUA..C....UGAAAC....GU......AG...CCGUACUCACG.............GUUUUCGCGCUCGCA.UGGCUACCAAAAAAGG.U.CG...C...C...A...GGU..CU.U...G.G.C.U.CG..UC.G.U....................................................C.G.U.GCC..A..A.A..GGUCGUGCACGUC........UG...UC--...-.-.-.-......AG.CCU.AAU.....UGuggcgaauca.................gucguucagcaGGGAG.U.UA.CG..U.U......U..--.-..-.-.GUU
   NZ_OU701459.1     AAA...GAACUUAUC.AA...CCGC....--AUA..A....AACUCCu..aAG......AA...ACGCACUCACG.............GCUUUCGUGUGCGUA.UGAAAACUAAAAAUGG.U.CG...C...A...A...AGU..GA.UuaaU.G.C.U.AG..A-.-.-....................................................C.G.C.GCU..A..A.G..GGAAGAAAAAGAC........UU...GCUG...U.G.U.G......AA.AUU.UUC.....--ua..................................gaUUUGA.U.AA.UG..C.U......G..GA.G..A.A.UUU
   NZ_OU907312.1     AAC...GCACCUAUC.AA...CCCU....CUGUG..C....UCAAGC....GC......GC...GCGUACUCAUG.............GAUUUCGGGCGCGAA.UGGCUACUAAAAAUGG.C.CG...U...A...A...AGU..AC.U...G.G.C.C.CG..UC.G.C....................................................C.G.C.GCC..A..A.A..GGUCGGGUACGCC........UU...GCAG...C.-.-.A......UA.ACU.GCUu..ca--......................................--AUG.U.AU.UA..A.C......A..GC.G..U.G.GUU
   NZ_OU912926.1     AAC...GUACAUAUC.AA...CCGU....CCGUC..A....CUAAAA....GG......AA...ACGGACUCAUG.............GAUUUCUGGUUCGCA.UGAGAACCAAGGGAGG.A.AG...G...G...C...AAU..UA.U...A.G.C.A.GC..UC.G.A....................................................A.G.A.GCU..A..A.A..GGCCGUGUGCGCC........UU...GCAG...U.U.U.A.....aUG.CUA.AACa..aa--......................................CUUUA.-.--.--..-.-......-..--.-..-.-.---
   NZ_OW441264.1     AAA...GAACAUUUC.AA...CCAU....CACUU..A....GAAAAA....GA......AG...CAAUAAGCAUG.............GUUUUAGGGAGCGUA.UGUCAACUGCUAAUGG.C.CG...U...U...C...CGU..AU.U...G.G.C.U.AG..AA.G.A....................................................C.G.C.GCC..A..A.A..GGAAGAGUCAAAU........UA...ACUG...U.U.U.C......UG.AUG.AAC.....CU......................................AGGCA.C.AA.AC..G.U......U..--.-..-.-.---
   NZ_OW485601.1     AGC...GCACGUAUC.AA...CCGU....CGAAG..C....UUGUUC....GC......AA...GCGCCGCCACG.............GCUUCCGGGCCCGCA.UGGCGACCGUCGGUGG.C.CG...C...A...A...GGU..CC.U...G.G.C.C.AA..CC.G.C....................................................C.G.G.GCC..A..A.G..GGCCGCAAGCGCC........UG...UCGG..cC.U.G.A......CC.GGC.AGC.....--cgg...............................gguuCGGGC.C.AU.--..-.-......-..--.-..-.-.---
   NZ_OX336425.1     AAA...GAACAUUUC.AA...CCAU....CGAAA..A....GAAAAA....GA......AG...AAAUAAGCACG.............GAUUUAUGGACAGAA.UGGCUUCUGCGAAUGG.A.AG...A...A...A...AGU..UC.U...G.G.C.G.CG..UA.G.A....................................................A.G.A.GCU..A..A.A..GGAAGACAUAAAU........UA...ACUG...U.U.U.C......UA.GCG.AAC.....CU......................................AGACA.C.AA.GA..AaU......A..AU.G..U.U.UCU
   NZ_OX366272.1     AGA...GAACAUUUC.AA...CCAA....AAAAU..U....UGAUAA....GA......AA...GCGCAGACACG.............GAUUUCGUUCACGUA.UGGCAACAAGAGCUGG.A.AG...A...A...A...AAU..CC.U...U.A.A.U.AG..GC.G.C....................................................C.G.U.UCA..U..U.A..GGGUGUAACAAAU........UA...UGCG...C.A.U.A......GU.--A.AGUa..ua--......................................---AA.A.AA.AA..A.A......G..AU.U..U.U.UCU
   NZ_OX366341.1     AAA...GAACAUUUC.AA...CCAA....AAAAU..U....UAAAAA....AA......AA...GCACAAACAUG.............GAUUUCGUUCACGUA.UGUCAACAAAAGCUGG.A.AG...A...A...A...AAU..UC.U...U.A.A.U.AA..GC.G.U....................................................C.G.C.UCA..U..U.A..GGGUGUAAUAAAU........UA...UGCG...C.A.U.A......GU.AAG.CAU.....--aaaaaaa........................aagaguu-----.-.--.UU..C.C......U..UU.G..C.U.UUU
   NZ_OX366343.1     AAA...GAACAUUUC.AA...CCAA....AAAAU..U....UUAAAA....AA......AA...GCACAAACAUG.............GAUUUCGUUCACGUA.UGUCAACAAAAGCUGG.A.AG...A...A...A...AAU..UC.U...U.A.A.U.AA..GC.G.U....................................................C.G.C.UCA..U..U.A..GGGUGUAAUAAAU........UA...UGCG...C.A.U.A......GU.AAG.CAU.....--aaaaaaa........................aagaguu-----.-.--.UU..C.C......U..UU.G..C.U.UUU
   NZ_OX366366.1     AAA...GAACAUUUC.AA...CCAA....AAAAU..U....UAAAAA....AA......AA...GCACAAACACG.............GAUUUCGUUCACGUA.UGUCAACAAAAGCUGG.A.AG...A...A...A...AAU..UC.U...U.A.A.U.AA..GC.G.U....................................................C.G.C.UCA..U..U.A..GGGUGUAAUAAAU........UA...UGCG...C.A.U.A......GU.AAG.CAU.....--aaaaaaa........................aagaguu-----.-.--.UU..C.C......U..UU.G..C.U.UUU
   NZ_OX366368.1     AGA...GAACAUUUC.AA...CCAA....AAAAU..U....UGAUAA....GA......AA...GCGCAGACACG.............GAUUUCGUUCACGUA.UGGCAACAAGAGCUGG.A.AG...A...A...A...AAU..CC.U...U.A.A.U.AG..GC.G.C....................................................C.G.U.UCA..U..U.A..GGGUGUAACAAAU........UA...UGCG...C.A.U.A......--.GUA.AGUau.aa--......................................-----.A.AA.AA..A.A......G..AU.U..U.U.UCU
   NZ_OX366391.1     AAA...GAACAUUUC.AA...CCAA....AAAAU..U....UUAAAA....AA......AA...GCACAAACAUG.............GAUUUCGUUCACGUA.UGUCAACAAAAGCUGG.A.AG...A...A...A...AAU..UC.U...U.A.A.U.AA..GC.G.U....................................................C.G.C.UCA..U..U.A..GGGUGUAAUAAAU........UA...UGCG...C.A.U.A......GU.AAG.CAU.....--aaaaaaa.......................aaagaguu-----.-.--.UU..C.C......U..UU.G..C.U.UUU
   NZ_OX366392.1     AAA...AAACAUUUC.AA...CCAA....AAAAU..U....UAAAAA....AA......AA...GCACAAACAUG.............GAUUUCGUUCACGUA.UGUCAACAAAAGCUGG.A.AG...A...A...A...AAU..UC.U...U.A.A.U.AA..GC.G.U....................................................C.G.C.UCA..U..U.A..GGGUGUAAUAAAU........UA...UGCG...C.A.U.A......GU.AAG.CAU.....--aaaaaaa........................aagaguu-----.-.--.UU..C.C......U..UU.G..C.U.UUU
   NZ_OX366395.1     AGA...GAACAUUUC.AA...CCAA....AAAAU..U....UGAUAA....GA......AA...GCGCAGACACG.............GAUUUCGUUCACGUA.UGGCAACAAGAGCUGG.A.AG...A...A...A...AAU..CC.U...U.A.A.U.AA..GC.G.C....................................................C.G.U.UCA..U..U.A..GGGUGUAACAAAU........UA...UGCG...C.A.U.A......--.GUA.AGUau.aa--......................................-----.A.AA.AA..A.A......G..AU.U..U.U.UCU


   Structure         (((....(((((.........((((......(((..(.....(((((.........................................))))).))))....).)))....((.((((((.(.((...............(((..(......(.(.(.(.((............................................................).).).)))..........)))).................))...))))...).).)........)).(((....................................................)).)....................)).)..).).)))


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ysdD-rpmH-rnpA-yidD



Position: 331-455, Conformation: #1







97% 90% 75% 50% Nucleotide present N N N Nucleotide identify E < 0.1 Base-pair covariation E < 0.05 Helix-level covariation 97% 90% 75%

A R G A C U Y C A R C C R R C G R R R C A Y G G Y U U Y C G R Y C G A U G R A C R R R Y G G Y C G Y R G U U R C G C G Y G C A A R G G Y G R R Y U C Y G Y 5'