ysdD-rpmH-rnpA-yidD



Position: 261-405, Conformation: #0







DMS reactivity > 1.0 0.0 0.4 0.7 G/U/No data
Position: 0 (position.label in template: 0.5')5' Position: 1 (position.label in template: 1.C) Reactivity: nanC Position: 2 (position.label in template: 2.A) Reactivity: nanA Position: 3 (position.label in template: 3.U) Reactivity: nanU Position: 4 (position.label in template: 4.C) Reactivity: nanC Position: 5 (position.label in template: 5.G) Reactivity: nanG Position: 6 (position.label in template: 6.U) Reactivity: nanU Position: 7 (position.label in template: 7.U) Reactivity: nanU Position: 8 (position.label in template: 8.U) Reactivity: nanU Position: 9 (position.label in template: 9.C) Reactivity: nanC Position: 10 (position.label in template: 10.A) Reactivity: nanA Position: 11 (position.label in template: 11.U) Reactivity: nanU Position: 12 (position.label in template: 12.U) Reactivity: nanU Position: 13 (position.label in template: 13.U) Reactivity: nanU Position: 14 (position.label in template: 14.U) Reactivity: nanU Position: 15 (position.label in template: 15.U) Reactivity: nanU Position: 16 (position.label in template: 16.C) Reactivity: nanC Position: 17 (position.label in template: 17.G) Reactivity: nanG Position: 18 (position.label in template: 18.G) Reactivity: nanG Position: 19 (position.label in template: 19.C) Reactivity: nanC Position: 20 (position.label in template: 20.G) Reactivity: nanG Position: 21 (position.label in template: 21.G) Reactivity: nanG Position: 22 (position.label in template: 22.A) Reactivity: nanA Position: 23 (position.label in template: 23.U) Reactivity: nanU Position: 24 (position.label in template: 24.A) Reactivity: nanA Position: 25 (position.label in template: 25.U) Reactivity: nanU Position: 26 (position.label in template: 26.C) Reactivity: nanC Position: 27 (position.label in template: 27.C) Reactivity: nanC Position: 28 (position.label in template: 28.A) Reactivity: nanA Position: 29 (position.label in template: 29.A) Reactivity: nanA Position: 30 (position.label in template: 30.U) Reactivity: nanU Position: 31 (position.label in template: 31.A) Reactivity: nanA Position: 32 (position.label in template: 32.A) Reactivity: nanA Position: 33 (position.label in template: 33.A) Reactivity: nanA Position: 34 (position.label in template: 34.G) Reactivity: nanG Position: 35 (position.label in template: 35.C) Reactivity: nanC Position: 36 (position.label in template: 36.C) Reactivity: 0C Position: 37 (position.label in template: 37.A) Reactivity: 0A Position: 38 (position.label in template: 38.U) Reactivity: nanU Position: 39 (position.label in template: 39.U) Reactivity: nanU Position: 40 (position.label in template: 40.G) Reactivity: nanG Position: 41 (position.label in template: 41.A) Reactivity: 1A Position: 42 (position.label in template: 42.A) Reactivity: 0A Position: 43 (position.label in template: 43.U) Reactivity: nanU Position: 44 (position.label in template: 44.U) Reactivity: nanU Position: 45 (position.label in template: 45.U) Reactivity: nanU Position: 46 (position.label in template: 46.A) Reactivity: 0.5A Position: 47 (position.label in template: 47.U) Reactivity: nanU Position: 48 (position.label in template: 48.U) Reactivity: nanU Position: 49 (position.label in template: 49.C) Reactivity: 1C Position: 50 (position.label in template: 50.A) Reactivity: 0.5A Position: 51 (position.label in template: 51.A) Reactivity: 1A Position: 52 (position.label in template: 52.G) Reactivity: nanG Position: 53 (position.label in template: 53.U) Reactivity: nanU Position: 54 (position.label in template: 54.U) Reactivity: nanU Position: 55 (position.label in template: 55.U) Reactivity: nanU Position: 56 (position.label in template: 56.A) Reactivity: 1A Position: 57 (position.label in template: 57.G) Reactivity: nanG Position: 58 (position.label in template: 58.G) Reactivity: nanG Position: 59 (position.label in template: 59.U) Reactivity: nanU Position: 60 (position.label in template: 60.A) Reactivity: 1A Position: 61 (position.label in template: 61.G) Reactivity: nanG Position: 62 (position.label in template: 62.A) Reactivity: 0A Position: 63 (position.label in template: 63.A) Reactivity: 1A Position: 64 (position.label in template: 64.A) Reactivity: 1A Position: 65 (position.label in template: 65.U) Reactivity: nanU Position: 66 (position.label in template: 66.C) Reactivity: 0C Position: 67 (position.label in template: 67.G) Reactivity: nanG Position: 68 (position.label in template: 68.C) Reactivity: 0.5C Position: 69 (position.label in template: 69.C) Reactivity: 0.5C Position: 70 (position.label in template: 70.A) Reactivity: 0A Position: 71 (position.label in template: 71.U) Reactivity: nanU Position: 72 (position.label in template: 72.G) Reactivity: nanG Position: 73 (position.label in template: 73.A) Reactivity: 1A Position: 74 (position.label in template: 74.A) Reactivity: 1A Position: 75 (position.label in template: 75.A) Reactivity: 0A Position: 76 (position.label in template: 76.C) Reactivity: 0.5C Position: 77 (position.label in template: 77.G) Reactivity: nanG Position: 78 (position.label in template: 78.C) Reactivity: 0.5C Position: 79 (position.label in template: 79.A) Reactivity: 1A Position: 80 (position.label in template: 80.C) Reactivity: 0C Position: 81 (position.label in template: 81.U) Reactivity: nanU Position: 82 (position.label in template: 82.U) Reactivity: nanU Position: 83 (position.label in template: 83.U) Reactivity: nanU Position: 84 (position.label in template: 84.U) Reactivity: nanU Position: 85 (position.label in template: 85.C) Reactivity: 0.5C Position: 86 (position.label in template: 86.A) Reactivity: 0.5A Position: 87 (position.label in template: 87.A) Reactivity: 0.5A Position: 88 (position.label in template: 88.C) Reactivity: 0.5C Position: 89 (position.label in template: 89.C) Reactivity: 0C Position: 90 (position.label in template: 90.G) Reactivity: nanG Position: 91 (position.label in template: 91.U) Reactivity: nanU Position: 92 (position.label in template: 92.C) Reactivity: 0.5C Position: 93 (position.label in template: 93.U) Reactivity: nanU Position: 94 (position.label in template: 94.G) Reactivity: nanG Position: 95 (position.label in template: 95.U) Reactivity: nanU Position: 96 (position.label in template: 96.A) Reactivity: 0A Position: 97 (position.label in template: 97.C) Reactivity: 1C Position: 98 (position.label in template: 98.U) Reactivity: nanU Position: 99 (position.label in template: 99.G) Reactivity: nanG Position: 100 (position.label in template: 100.A) Reactivity: 0A Position: 101 (position.label in template: 101.A) Reactivity: 0.5A Position: 102 (position.label in template: 102.G) Reactivity: nanG Position: 103 (position.label in template: 103.C) Reactivity: 0.5C Position: 104 (position.label in template: 104.G) Reactivity: nanG Position: 105 (position.label in template: 105.C) Reactivity: 0C Position: 106 (position.label in template: 106.A) Reactivity: 0A Position: 107 (position.label in template: 107.A) Reactivity: 1A Position: 108 (position.label in template: 108.C) Reactivity: 0.5C Position: 109 (position.label in template: 109.C) Reactivity: 0C Position: 110 (position.label in template: 110.G) Reactivity: nanG Position: 111 (position.label in template: 111.U) Reactivity: nanU Position: 112 (position.label in template: 112.U) Reactivity: nanU Position: 113 (position.label in template: 113.C) Reactivity: 1C Position: 114 (position.label in template: 114.U) Reactivity: nanU Position: 115 (position.label in template: 115.C) Reactivity: 0.5C Position: 116 (position.label in template: 116.A) Reactivity: 0A Position: 117 (position.label in template: 117.C) Reactivity: 0C Position: 118 (position.label in template: 118.G) Reactivity: nanG Position: 119 (position.label in template: 119.G) Reactivity: nanG Position: 120 (position.label in template: 120.C) Reactivity: 0C Position: 121 (position.label in template: 121.U) Reactivity: nanU Position: 122 (position.label in template: 122.U) Reactivity: nanU Position: 123 (position.label in template: 123.C) Reactivity: 1C Position: 124 (position.label in template: 124.C) Reactivity: 0.5C Position: 125 (position.label in template: 125.G) Reactivity: nanG Position: 126 (position.label in template: 126.U) Reactivity: nanU Position: 127 (position.label in template: 127.G) Reactivity: nanG Position: 128 (position.label in template: 128.C) Reactivity: 0.5C Position: 129 (position.label in template: 129.U) Reactivity: nanU Position: 130 (position.label in template: 130.C) Reactivity: 0.5C Position: 131 (position.label in template: 131.G) Reactivity: nanG Position: 132 (position.label in template: 132.U) Reactivity: nanU Position: 133 (position.label in template: 133.A) Reactivity: 0.5A Position: 134 (position.label in template: 134.U) Reactivity: nanU Position: 135 (position.label in template: 135.G) Reactivity: nanG Position: 136 (position.label in template: 136.G) Reactivity: nanG Position: 137 (position.label in template: 137.C) Reactivity: 0C Position: 138 (position.label in template: 138.U) Reactivity: nanU Position: 139 (position.label in template: 139.A) Reactivity: 0.5A Position: 140 (position.label in template: 140.C) Reactivity: 1C Position: 141 (position.label in template: 141.U) Reactivity: nanU Position: 142 (position.label in template: 142.A) Reactivity: 0A Position: 143 (position.label in template: 143.A) Reactivity: 0A Position: 144 (position.label in template: 144.A) Reactivity: 0A Position: 145 (position.label in template: 145.A) Reactivity: 0.5A Position: 146 (position.label in template: 146.A) Reactivity: 1A Position: 147 (position.label in template: 147.U) Reactivity: nanU Position: 148 (position.label in template: 148.G) Reactivity: nanG Position: 149 (position.label in template: 149.G) Reactivity: nanG Position: 150 (position.label in template: 150.U) Reactivity: nanU Position: 151 (position.label in template: 151.C) Reactivity: nanC Position: 152 (position.label in template: 152.G) Reactivity: nanG Position: 153 (position.label in template: 153.U) Reactivity: nanU Position: 154 (position.label in template: 154.C) Reactivity: nanC Position: 155 (position.label in template: 155.A) Reactivity: nanA Position: 156 (position.label in template: 156.G) Reactivity: nanG Position: 157 (position.label in template: 157.G) Reactivity: nanG Position: 158 (position.label in template: 158.U) Reactivity: nanU Position: 159 (position.label in template: 159.U) Reactivity: nanU Position: 160 (position.label in template: 160.C) Reactivity: nanC Position: 161 (position.label in template: 161.U) Reactivity: nanU Position: 162 (position.label in template: 162.G) Reactivity: nanG Position: 163 (position.label in template: 163.G) Reactivity: nanG Position: 164 (position.label in template: 164.C) Reactivity: nanC Position: 165 (position.label in template: 165.A) Reactivity: nanA Position: 166 (position.label in template: 166.C) Reactivity: nanC Position: 167 (position.label in template: 167.G) Reactivity: nanG Position: 168 (position.label in template: 168.U) Reactivity: nanU Position: 169 (position.label in template: 169.C) Reactivity: nanC Position: 170 (position.label in template: 170.G) Reactivity: nanG Position: 171 (position.label in template: 171.U) Reactivity: nanU Position: 172 (position.label in template: 172.C) Reactivity: nanC Position: 173 (position.label in template: 173.G) Reactivity: nanG Position: 174 (position.label in template: 174.U) Reactivity: nanU Position: 175 (position.label in template: 175.G) Reactivity: nanG Position: 176 (position.label in template: 176.C) Reactivity: nanC Position: 177 (position.label in template: 177.U) Reactivity: nanU Position: 178 (position.label in template: 178.A) Reactivity: nanA Position: 179 (position.label in template: 179.A) Reactivity: nanA Position: 180 (position.label in template: 180.A) Reactivity: nanA Position: 181 (position.label in template: 181.G) Reactivity: nanG Position: 182 (position.label in template: 182.G) Reactivity: nanG Position: 183 (position.label in template: 183.C) Reactivity: nanC Position: 184 (position.label in template: 184.C) Reactivity: nanC Position: 185 (position.label in template: 185.G) Reactivity: nanG Position: 186 (position.label in template: 186.3')3' 10 20 30 50 100 150


ysdD-rpmH-rnpA-yidD



Position: 261-405, Conformation: #0







Retained alignments:


   NC_000908.2       -.A.C.-.-..-..C.....A..A.U.....U.....A.G.....UC.......-...A..G.A.C.C...C.U........U....A.....G.....U.......U....U...A.G...U....U...AU.....Aa...ucA....C..C....U..G.A.....U.U...A.....A.....U...U...G...UU.UCAUG...AAA...C......GAACAUACCAACC.A.A...GC.AAA..UUAAAGC................................GUGC.UAAAACCC....................................AUGGUUUUAUGGCUAGGAUGGCA.ACUGCACAAGGACG.U.AA...AGUU.U...U...A...A.G.G....CA.AAGA......................................C.G.U.UU.U.A..AA...AAUC
   NC_002620.2       G.U.C.U.C..U..U.....U..A.G.....G.....G.A.....CA.......A...G..G.U.C.A...C.U........G....A.....A.....G.......-....-...-.-...-....-...--.....-......G....U..U....A..G.G.....-.-...-.....A.....G...A...A...UA.UUGUG...AAA...C......GCACCUAUCAACC.U.A...GU.AAA..AGAAAAC................................GUAC.A-------aauuc..........ugugg................---GAUUUAGAGCUCGCAUGGCU.ACAAAAAGUGGAAG.A.AA...UCUU.U...U...A...A.A.U....CG.UCGU......................................C.G.C.CG.U.C..AC...GGCA
   NC_002939.5       U.U.U.G.C.aA..U.....C..C.C.....C.....G.A.....GA.......A...C..A.C.C.C...U.C........G....A.....U.....U.......U....U...C.A...C....-...--.....U......G....U..A....C..G.G.....A.-...-.....G.....A...G...A...AC.CCAUG...AAG...A......GGACUUAUCAACC.G.A...GU.AAU..ACGUCGC................................GUAA.GCGCACCC....................................ACGGCUUUCUCGUACGCAUGGCA.ACCAAAAACGGCCG.U.CU...GGUC.A...U...C...A.A.G....CG.UCGC......................................C.G.U.GC.C.A..AG...GGGC
   NC_002967.9       A.G.C.G.G..G..G.....-..-.-.....-.....-.-.....--.......-...U..U.U.C.C...C.-........-....-.....-.....-.......G....C...U.C...U....A...UA.....A......U....A..U....A..A.G.....G.A...G.....U.....C...U...A...GU.UUAUG...AAA...C......GGACAUAUCAACC.A.A...GU.AAA..ACAAAGC................................GGGU.UCGACGCU....................................UCGGAUUCCGUGCACUUAUGAAA.ACAAAGGGCGGUCG.U.GC...UGUU.U...U...A..aG.C.-....CG.CCGC......................................A.G.A.GC.A.A..AG...GGCA
   NC_002977.6       -.-.-.-.-..-..-.....-..-.-.....-.....-.U.....UU.......U...C..U.U.U.-...U.U........G....C.....C.....G.......C....U...G.C...U....C...GG.....C......A....U..C....A..A.G.....C.A...G.....G.....A...C...C...GA.UCAUG...AAA...A......GAACCUAUCAACC.A.A...GC.AAG..AUCAAGC................................GCGU.GCGCACCC....................................ACGGCUUCCGCGCCCGCAUGAAG.ACCCGCGGCGGCCG.C.GC...CGUC.C...U...C..aG.C.G....C-.CCGG......................................C.G.C.GC.G.A..AA...GGGC
   NC_003361.3       G.U.C.C.A..A..U.....C..G.U.....U.....C.A.....GU.......A...A..G.C.U.A...G.A........A....A.....G.....A......cU....U...A.G...A....A...AC.....C......A....A..U....A..G.G.....-.-...-.....A.....A...G...G...UA.CUGUG...AAA...C......GGACUUAUCAACC.U.A...GC.AAA..AGAAAGC................................GUCG.A-------aauuc..........ugugg................---GCUUCCGUACCCGUAUGGCU.ACAAAAAACGGAAG.A.AA...UUUA.C...U...G...A.A.U....CG.UCGC......................................C.G.CcGU.C.A..--...UGGC
   NC_003910.7       C.A.U.G.U..G..U.....G..C.U.....C.....A.A.....UAg.....gC...U..G.U.U.U...U.G........C....C.....A.....G.......G....G...C.A...A....C...AA.....C......A....A..C....C..G.A.....C.G...G....aU.....U...A...G...CG.UAAUG...AAA...A......GAACAUUUCAACC.U.A...GC.GUA..UUAAAGC................................GUAA.GCGUAACC....................................ACGGAUUCCGUGCUCGUAUGGCA.ACUAAAAACGGACG.U.GC...UGUU.A...U...A...G.C.U....CG.UCGU......................................C.G.U.GC.G.A..AA...GGCC
   NC_004193.1       -.-.-.-.-..A..A.....G..A.U.....G.....A.A.....AG.......A...G..U.U.U.A...A.A........U....A.....U.....Ga....auU....G...A.A...U....U...CU.....C......C....U..A....G..G.A.....G.G...U.....G.....C...A...U...AG.ACAUG...AAA...A......GAACGUUUCAACC.A.A...AU.AAU..CGUAAAC................................GCAA.--------....................aaaa........guucACGGCUUUCGCGCACGUAUGAGC.ACUAAAAAUGGACG.U.AA...UGUU.U...U...A...G.C.U....CG.UCGU......................................C.G.UcGC.A.A..AG...GAC-
   NC_004347.2       -.-.-.-.-..-..-.....-..-.-.....-.....G.A.....UA.......A...G..G.A.U.Au.gU.U........C....A.....C.....U.......A....A...U.A...A....C...AA.....A......G....A..C....G..G.A.....U.U...G.....C.....C...A...U...CA.UGAGU...AAA...C......GUACUUUUCAACC.U.A...GC.AAC..CUGAAGC................................GCAA.GCGUUCUC....................................ACGGCUUCCGCGCUCGUAUGGCU.ACUGCAGGCGGCCG.U.AA...GGUG.C...U...U...G.C.A....CG.UCGU......................................C.G.U.GC.G.A..AA...GGUC
   NC_004369.1       -.-.-.-.-..-..-.....-..-.-.....-.....-.-.....--.......-...-..-.-.-.A...A.U........A...aA.....A.....U.......U....U...U.A...G....G...AG.....U......G....U..U....U..U.A.....A.C...G.....U.....G...G...C...AA.AGGGC...AAG...C......GGACGUUCCAGCC.G.A...AC.AAC..CGUCGUC................................GUGC.ACGUGUUC....................................ACGGCUUCCGUACUCGCAUGCGC.ACCCGCGCCGGCCG.U.GC...GAUU.G...UugcG...G.C.U....CG.UCGU......................................C.G.-.--.C.A..AG...GGUC
   NC_004556.1       -.-.-.-.-..-..-.....-..-.U.....C.....U.-.....UU.......A...G..U.U.U.U...A.C........A....U.....A.....G.......A....U...A.G...C....U...UA.....A......U....A..G....A..G.G.....-.A...C.....C.....G...A...U...GG.CCACC...AAG...C......GUACUUAUCAACC.U.A...GU.AAU..CUUAAGC................................GUAA.GCGUGAUC....................................AUGGCUUUCGUGCUCGUAUGAGC.ACCGCAGAUGGUCG.U.AA...AAUC.U...U...A...G.C.U....CG.CCGU......................................C.G.U.GC.U.A..AA...GGCC
   NC_004578.1       C.G.G.G.G..G..-.....-..-.C.....C.....A.U.....UC.......C...G..G.C.C.C..gU.A........G....U.....G.....G.......A....C...-.-...-....-...-G.....A......A....C..C....A..G.G.....U.-...-.....A.....A...C...A...CG.CCAUG...AAA...C......GUACUUUCCAACC.C.A...GC.ACU..AUCAAGC................................GCGC.CCGCACCC....................................ACGGUUUCCGUGCACGUAUGGCC.ACCAAAAACGGCCG.C.GC...CGUC.C...U...U...U.C.G....CG.UCGU......................................C.G.U.GC.C.A..AA...GGCC
   NC_004757.1       U.A.C.U.G..A..C.....U..U.C.....A.....C.U.....UA.......G...U..U.U.C.C...U.U........A....C.....G.....C.......A....A...G.U...A....C...A-.....-......A....A..C....A..G.A.....C.A...U.....C.....A...U...U...AA.AAAUG...AAA...C......GUACCUACCAACC.A.U...CC.GUC..AU-CAGC................................AGAAaACGUACCC....................................AUGGAUUUCGCGUCCGCAUGAAA.ACGCGCGGCGGCAG.A.GC...AGUU.A...UucgU...G.C.A....CG.C---......................................C.G.A.GC.A.A..AA...GGAC
   NC_004917.1       G.C.A.A.A..A..A.....A..U.U.....G....gC.A.....UA.......A...U..U.G.C.-...-.C........A....G.....U.....U.......U....A...A.U...U....U...A-.....-......-....-..U....C..U.G.....A.A...G.....G.....U...U...A...AG.AAAUG...AAG...A......GAACUUACCAGCC.A.C...AC.A--..AUACAC-.....................c........uaGAAA.ACGCACAC....................................ACGGCUUUCGUGCAAGAAUGAAA.ACAAAAAAUGGUCG.G.CG...UGUU.A...U...U..aA.C.G....C-.----aa.....................gaa............-.G.A.GC.A.A..AA...GGUC
   NC_005126.1       -.-.-.-.A..U..U.....U..A.C.....U.....G.-.....--.......-...A..A.U.C.A...-.-........G....U.....A.....A.......U....A...A.U...C....U...UA.....A......G....U..U....A..G.G.....U.A...G.....A.....A...A...U...CG.CUAUG...AAA...C......GCACUUUCCAACC.A.U...CC.GUA..CUGAAGC................................GUAA.CCGUUCUC....................................AUGGUUUCCGCGCUCGUAUGGCU.ACCAAAAAUGGUCG.U.CA...GGUU.C...U...G...G.C.U....CG.CCGU......................................C.G.U.GC.A.A..AA...GGCC
   NC_005966.1       -.G.C.G.C..A..A.....U..A.C.....A.....A.U....cGC.......G...A..A.C.C.U...U.U........A....U.....A.....G.......A....U...A.G...A....U...CA.....A......U....U..U....G..G.G.....A.-...-.....G.....U...U...U...CG.ACAUG...AAA...C......GUACUUUCCAGCC.U.U...CG.GAA..UUAAAAC................................GUAA.ACGCGUUC....................................AUGGUUUCCGUGCUCGCAUGGCU.ACUAAAGCUGGUCG.U.CA...GGUU.U...U...G...G.C.U....CG.CCGU......................................C.G.U.GC.U.A..AA...GGUC
   NC_006055.1       C.A.C.U.U..A..U.....A..U.U.....A.....U.A.....AU.......U...A..A.C.A.A...G.A........A....U.....U.....A......uC....A...A.C...U....U...UA.....A......A....A..G....G..G.G.....G.U...U.....U.....G...A...A...UA.CAAUG...AAA...A......GAACUUGACAACC.A.U...CA.AAA..AUUAAAC................................ACGC.UCGUGUUC....................................ACGGUUUUAGAGCUAGAAUGGCU.ACUAAAAAUGGAAG.A.AA...AGUU.A...UcaaA...G.C.U....C-.--GU......................................A.G.A.GC.A.A..AA...GGUA
   NC_006138.1       -.C.U.G.A..G..A.....A..A.-.....-.....-.-.....-U.......A...G..C.C.U.G...U.A........U....U.....C.....U......gU....A...A.A...A....U...AA.....U......A....A..G....A..G.G.....A.A...G.....U.....C...G...A...AA.UGAGU...AAA...A......GAACUUUUCAGCC.A.A...GU.AAC..AUCAAGC................................GUAG.UCGUACCC....................................AUGGUUUUCGUGCGCGUAUGAGC.ACCCGUGCCGGUCG.UgCA...AUUC.U...U...A...A.C.G....C-.UCGC......................................A.G.A.GC.U.A..AA...GGAC
   NC_006510.1       U.A.A.U.G..A..G.....A..A.A.....G.....A.-.....-C.......U...G..C.C.C.G...U.A........A....C.....U.....G.......U....U...A.U...U....C...CC.....-......-....U..A....G..G.G.....A.G...G.....U.....G...U...C...AU.AGAUG...AAA...C......GGACGUAUCAACC.G.A...AU.AGA..CGGAAAC................................GAAG.CAAAGUGC....................................ACGGAUUCCGCGCGCGCAUGAGC.ACGAGAAACGGCAG.A.AA...AGUG.U...U...G...G.C.G....CG.CCGC......................................C.G.C.CG.C.A..AA...GGAA
   NC_006512.1       -.G.U.G.G..G..-.....-..-.-.....-.....-.-.....--.......-...-..-.-.-.-...-.A........A....A.....U.....A.......G....C...A.A...A....C...UG.....A......C....C..G....A..U.G.....G.A...A.....U.....A...U...U...AG.UUAUG...AAA...A......GAACAUUUCAACC.A.A...GC.GUA..UUAAAGC................................GCAA.GCGUUCAC....................................ACGGUUUCCGUGCUCGCAUGGCA.ACAAAAAAUGGCCG.C.AA...AGUA.C...U...G...G.C.U....CG.UCGC......................................C.G.U.GC.A.C..GU...GGUC
   NC_007164.1       C.G.U.G.G..C..U.....C..G.U.....C....cG.C.....UG.......C...U..A.G.C.A...A.A........-....-.....A.....G.......U....U...A.A...G....G...AG.....U......G....A..A....G..U.A.....C.C...G.....U.....G...G...C...CA.AGGGC...AAG...C......GUACUUUCCAGCC.C.A...AC.AAC..CGUCGUC................................GUGC.ACGCGUGC....................................ACGGUUUCCGUACCCGCAUGCGU.ACCCGCGCCGGCCG.U.GC...CAUC.G...U...U...U.C.-....CGcACGC......................................C.G.C.AA.C.A..AG...GGCC
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   NZ_LT821227.1     -.-.-.-.-..-..-.....-..A.A.....U.....U.A.....UU.......A...A..G.C.U.A...U.A........A....U.....A.....U......cU....U...G.U...U....C...CU.....G.....uG....A..U....U..U.A.....U.U...G.....G.....A...G...G...AA.UAAUG...AAA...A......GAACAUAUCAACC.A.A...AU.A--..-------................................---U.ACGU----....................aaaagagcaaaaugccACGGAUUUAGAUCAAGAAUGGCA.ACUAAAGGCGGCCA.G.AA...AGUG.C...U...U...G.C.A....AG.AAGA......................................C.G.U.GC.G.A..AA...GGCC
   NZ_LT828648.1     -.-.-.G.U..U..U.....G..C.A.....A.....A.U.....GA.......U...-..-.-.C.G...A.A........G....G.....A.....U.......C....C...A.A...G....G...AG.....U......A....C..U....A..G.G.....A.U...G.....U.....C...A...U...U-.-----...---...-......-UACCUUUCAACA.G.CcguCA.AAU..UUGAAGA................................AGAA.GCGUGAGC....................................ACGGGUUCCGCAAACGUAUGUCG.ACCAAGAACGGUCG.C.AA...GGUA.U...U...G...G.C.U....CG.CCGU......................................C.G.U.GC.C.A..AG...GGGC
   NZ_LT853882.1     -.-.-.-.-..-..A.....A..A.U.....U.....U.C.....UG.......G...U..C.C.U.A...U.U.......cG....A.....C.....U.......U....C...A.U...U....C...AU.....G......C....A..G....A..G.G.....G.C...C.....C.....C...A...U...GG.CCACC...AAG...C......GUACUUUCCAACC.C.A...GC.AAC..CUCAAGC................................GAGC.ACGCGACC....................................AUGGCUUCCGCGCACGUAUGGCA.ACUGCCGAUGGCCG.C.AA...GAUC.C...U...G...G.C.U....CG.CCGC......................................C.G.C.GC.C.A..AG...GGCC
   NZ_LT855380.1     A.A.C.G.G..G..G.....G..C.C.....A.....U.U.....CC.......G...G..C.C.C.G...U.A........G....U.....G.....G.......A....C...G.-...-....-...--.....A......A....C..C....A..G.G.....U.-...-.....A.....A...C...A...CG.CCAUG...AAA...C......GUACUUUCCAACC.C.A...GC.ACU..AUCAAGC................................GCGC.CCGCACCC....................................ACGGUUUCCGUGCACGUAUGGCC.ACCAAAAACGGCCG.U.GC...CGUU.C...U...G...U.C.G....CG.UCGU......................................C.G.C.GC.C.A..AA...GGCC
   NZ_LT859958.1     G.G.U.G.U..G..U.....U..G.A.....G.....A.A.....AA.......A...A..G.G.C.A...A.G........A....A.....A.....A.......U....A...A.G...C....A...AG.....A......A....A..G...gA..C.U.....C.C...G.....U.....A...A...G...AA.UGCCA...AAG...C......GAACAUAUCAACC.G.A...AA.CGU..CG-CCGC...............................cGCGU.UCGUGUGC....................................AUGGGUUUCGGAAACGAAUGCAA.ACCAAAGGCGGACA.G.AA...CGUU.C...U...G...A.A.G....CG.ACGU......................................C.G.A.GC.A.A..AG...GGAC
   NZ_LT897836.1     G.U.U.G.A..G..U.....G..G.C.....U.....A.A.....AU.......G...U..U.U.U.A...U.U........U....A.....A.....Gu....aaU....U...A.U...G....A...AA.....G......U....U..U....A..G.G.....U.G...U.....A.....A...A...U...AG.CUAUG...AAA...C......GUACUUUUCAACC.U.U...CU.GUA..UUGAAAC................................GCAA.UCGUACCC....................................ACGGUUUCCGUGCUCGGAUGGCA.ACGAAGAACGGUCG.U.CA...GGUA.U...U...G...G.C.U....CG.UCGC......................................C.G.U.UC.A.A..AA...GGUC
   NZ_LT906435.1     -.-.-.-.G..U..U.....U..U.A.....Cg...aU.G.....CU.......G...C..U.G.C.G...C.G.......gG....A.....A.....U.......U....U...U.U...U....C...AC.....A......C....A..G....-..-.-.....-.U...G.....A.....G...U...G...CA.UCAUG...AAA...C......GUACUUUUCAGCC.U.U...CC.GUG..ACGCGCC................................GCAA.GCGCACCC....................................AUGGCUUCCUGGUUCGCAUGAAG.ACCCGUGGCGGCCG.C.AA...GGUC.A...U...C...G.C.C....GC.UCGU......................................C.G.C.GC.C.A..AG...GGCC
   NZ_LT906444.1     U.A.A.G.A..C..U.....G..U.C.....U.....A.A.....UA.......G...A..U.A.A.A...U.U........C....G.....A.....U.......U....G...G.A..cC....C...UU.....U......U....A..U....G..G.G.....A.G...G.....U.....G...U...A...AU.UAAUG...AAA...A......GAACAUAUCAACC.A.A...GU.AAA..CGUAAAA................................GAAA.AAAAGUGC....................................AUGGUUUCCGUACGCGUAUGAGU.ACUAAAAACGGACG.U.AG...AGUU.U...U...A...G.C.A....AG.UCGU......................................C.G.U.CG.U.A..AA...GGAA
   NZ_LT906445.1     C.C.C.U.G..U..U.....A..U.G.....G.....U.A.....UA.......A...G..U.A.A.A...A.C........A....A.....U.....A.......C....A...A.-...-....A...AU.....G......A....C..G....A..G.G.....A.Gg.uG.....U.....U...U...U...AC.UAAUG...AAA...C......GUACUUACCAACC.A.A...AU.ACU..CUUUGGA................................GAAA.ACGUACCC....................................AUGGUUUCCGUGAACGCAUGAAA.ACUAUCGGUGGCCG.U.CU...CGUU.U...U...G...A.A.A....AG.AAGA......................................C.G.U.GC.A.A..AA...GGCA
   NZ_LT906448.1     -.-.-.-.-..C..U.....U..G.U.....U.....U.U.....CA.......A...G..A.U.U.A...C.U........G....A.....A.....C.......A....A...U.U...U....U...UG.....A......U....U..U....A..G.G.....U.A...A.....A....uU...A...U...AG.UUAUG...AAA...C......GUACAUUUCAACC.A.U...CA.GUG..UUAAAAC................................GUAG.UCGCACUC....................................ACGGUUUCCGUGCUCGUAUGGCA.ACUAAAAAUGGCCG.C.CA...AGUU.U...U...A...G.C.U....CG.UCGU......................................C.G.U.GC.U.A..AA...GGUC
   NZ_LT906451.1     A.U.-.-.-..-..-.....-..-.-.....-.....-.-.....CA.......U...U..G.C.C.A...A.C........C....U.....U.....A.......A....A...A.A...U....U...UA.....A......U....U..A....A..C.A.....A.C...A.....G.....G...U...U...UA.UCAUG...AAA...C......GCACAUUCCAACC.C.A...GU.AAU..CUAAAGC................................GCAA.ACGCGAUC....................................AUGGUUUUCGUCAGCGCAUGUCA.ACUCGUGGUGGUCG.A.UU...GGUG.U...U...A...A.A.G....CG.UCGU......................................C.G.U.GC.U.A..AA...GGUC
   NZ_LT906460.1     -.-.-.-.-..-..-.....A..U.C.....U.....G.A.....UG.......U...A..U.U.A.G...A.U........A....A.....U.....U.......G....U...A.U...A....A...AG.....A......U....G..G....A..G.G.....U.G...U.....U.....U...U...G...CA.UGGUA...AAA...C......GUACUUAUCAACC.A.A...AU.AAA..CGUAAAC................................AUAG.UAAAGUUC....................................AUGGUUUCAGAAAACGCAUGAGC.ACUAAAAAUGGCCG.U.AA...AGUU.U...U...A...G.C.G....CG.CCGU......................................C.G.U.CG.U.A..AA...GGCC
   NZ_LT906463.1     G.U.A.G.A..A..U.....U..G.C.....G.....G.C.....CU.......A...U..U.U.U.U...U.G........C....A.....A.....C.......C....C...A.U...U....U...UG.....A......U....U..U....A..G.G.....U.A...G.....A.....-...U...U...AC.AAAUG...AAA...C......GUACAUUUCAACC.U.U...CC.GUA..UUAAAAC................................GUAA.CCGUACUC....................................ACGGUUUCCGUGCACGUAUGGCA.ACUAAAAACGGCCG.U.CA...AGUU.U...U...A...G.C.U....CG.UCGU......................................C.G.U.GC.U.A..AA...GGUC
   NZ_LT906464.1     -.-.U.A.G..A..G.....U..G.A.....U.....G.A.....UU.......A...G..A.U.A.A...U.U........G....G.....A.....C.......G....A...A.U...U....G...AG.....A......C....G..G....A..G.G.....U.G...U.....U.....U...U...G...CA.UGGUA...AAA...C......GUACUUAUCAACC.A.A...AC.AAA..CGUAAAC................................AUAG.UAAAGUUC....................................AUGGUUUCAGAAAACGUAUGAGC.ACUAAAAAUGGCCG.U.AA...AGUA.U...U...G...G.C.G....CG.UCGU......................................C.G.U.CG.U.A..AA...GGUC
   NZ_LT906467.1     C.G.C.U.G..C..G.....C..A.C.....C.....G.C.....UG.......G...C..C.G.C.C...G.U........G....A.....U.....G.......U....A...A.C...U....-...--.....-......A....C..A....A..G.G.....A.G...U.....C.....C...A...U...CG.UGUCU...AAG...C......GGACUUUUCAGCC.C.A...AU.AAC..CGUCGUC................................GCGC.ACGCAAGC....................................ACGGCUUCCGCGCCCGCAUGCGU.ACCCGCGCCGGCCG.C.GC...UAUC.G...U...U...UcC.G....CG.-CGC......................................C.G.C.AA.G.A..AG...GGCC
   NZ_LT906470.1     C.C.C.U.G..U..U.....A..U.G.....G.....U.A.....UA.......A...-..G.U.A.A...A.A........C....A.....A.....U.......A....U...A.A...G....G...AC.....G......A....G..G....A..G.G.....U.-...G.....U.....U...U...U...AC.UAAUG...AAA...C......GUACUUACCAACC.A.A...AU.ACU..CUUUGGA................................GAAA.ACGUACUC....................................AUGGUUUCCGUGAACGCAUGAAA.ACUAUUGGAGGCCG.U.CU...CGUU.U...U...G...A.A.A....AG.AAGA......................................C.G.C.GC.A.A..AA...GGCA
   NZ_LT906473.1     -.-.-.-.-..-..-.....-..-.-.....-.....-.-.....GU.......G...C..C.G.C.U...G.G........U....C.....G.....U.......C....G...C.A...C....C...CC.....U......U....C..A....A..G.G.....A.G...A.....C.....A...A...C...CG.UGUCU...AAG...C......GGACGUUCCAGCC.G.A...AC.AAC..CGCCGUC................................GCUC.UCGUAAGC....................................ACGGCUUCCGUACCCGUAUGCGC.ACCCGUGCAGGUCG.C.GC...UAUC.G...U...U...UcC.G....CG.-CGC......................................C.G.C.AA.G.A..AG...GGCC
   NZ_LT906481.1     -.-.-.-.-..G..C.....U..U.C.....G.....C.C.....UC.......C...G..C.G.C.G...U.A........G....U.....U.....U.......U....A...A.-...-....-...--.....-......-....G..G....A..G.U.....G.A...A.....G.....U...A...C...CG.UGUCG...AAG...C......GUACUUACCAGCC.U.A...AU.AAC..CGCCGUC................................GCGC.ACGCGUGC....................................ACGGCUUCCGCACCCGCAUGCGC.ACCCGCGCAGGUCG.C.GC...GAUC.G...UgucC...G.C.A....CG.UCGU......................................C.G.U.--.-.A..AG...GGCC
   NZ_LT906482.1     U.A.C.G.C..C..G.....C..U.U.....U.....C.U.....GA.......U...U..U.U.A.G...A.U........U....A.....U.....U.......U....C...C.A...-....-...--.....-......-....-..-....-..-.-.....C.G...G.....G.....A...A...A...CA.UCAUG...AAA...C......GCACUUAUCAACC.C.U...CC.GUU..AUCCGCC................................GCAA.ACGCACCC....................................AUGGUUUCUUGGUUCGCUCCAAA.ACACGCGGCGGCCG.U.GC...CGUG.U...U...G...G.C.U....GC.UCGU......................................C.G.C.GC.C.A..AA...GGCC
   NZ_LT907975.1     C.G.C.A.G..C..U.....U..U.U.....U.....U.A.....AA.......-...G..C.G.A.A...A.-........-....-.....-.....-.......-....-...A.U...C....U...AC.....U......C....U..C....A..G.G.....A.G...A.....U.....A...A...U...CG.AUAUG...AAA...C......GUACUUACCAGCC.C.A...GC.AAA..UGCCGUC................................GUAA.AAGAACCC....................................ACGGUUUCCUGGUGCGUUCCCGC.ACCAAAAACGGUCG.C.GC...GGUG.C...U..cC...G.C.-....CG.CCGU......................................C.G.C.GC.C.A..AA...GGGC
   NZ_OU015430.1     U.C.C.G.G..U..U.....C..C.G.....C.....A.U.....AA.......A...C..C.C.C.A...G.A........G....C.....C.....G.......U....-...-.-...-....-...--.....-......-....-..-....-..-.-.....-.-...A.....C.....C...A...U...GG.CCACC...AAG...C......GCACCUAUCAGCC.C.A...GC.AAC..CUCAAGC................................GCAA.GCGCGACC....................................ACGGCUUCCGUGCCCGCAUGGCG.ACCGCCGACGGCCG.C.AA...GAUC.C...U...C...G.C.G....CG.UCGC......................................C.G.C.GC.C.A..AG...GGCC
   NZ_OU343031.1     U.A.U.A.G..A..U.....U..U.U.....U.....U.C.....AA.......A...A..C.A.C.G...C.U........U....C.....G.....G.......C....U...U.A...U....C...CU.....C......U....A..A....C..G.A.....A.U...G.....A.....G...A...G...CA.ACAUG...AAA...C......GUACCUAUCAACC.G.U...CC.GUG..A------c...................cuc.......uaGAAA.ACGCACCC....................................ACGGCUUCCGCAUUCGCAUGAAG.ACCGCUGGCGGCCG.U.AG...AGUU.A...Uu.a-...A.C.G....CG.-CGC......................................C.G.C.GC.G.A..AA...GGUC
   NZ_OU594967.1     -.-.-.-.-..G..C.....C..U.G.....C.....U.G.....UA.......C...-..-.-.A.G...U.A........A....A.....A.....A.......C....U...A.G...C....U...AG.....C......A....A..A....A..C.G.....G.U...A.....U.....U...A...U...UA.UUAUG...AAA...C......GUACAUUUCAACC.A.A...GC.GUA..CUGAAAC................................GUAG.CCGUACUC....................................ACGGUUUUCGCGCUCGCAUGGCU.ACCAAAAAAGGUCG.C.CA...GGUC.U...U...G...G.C.U....CG.UCGU......................................C.G.U.GC.C.A..AA...GGUC
   NZ_OU907312.1     -.-.-.-.G..U..U.....U..A.G.....A.....A.U.....GC.......A...C..C.C.U.A...C.U........C....A.....A.....C.......Uc..cU...A.U...C....G...CU.....U......A....A..U....G..G.G.....G.A...C.....A.....C...U...A...CA.CAAUG...AAA...C......GCACCUAUCAACC.C.U...CU.GUG..CUCAAGC................................GCGC.GCGUACUC....................................AUGGAUUUCGGGCGCGAAUGGCU.ACUAAAAAUGGCCG.U.AA...AGUA.C...U...G...G.C.C....CG.UCGC......................................C.G.C.GC.C.A..AA...GGUC
   NZ_OU912926.1     C.C.C.G.U..A..A.....A..U.A.....A.....U.G.....UA.......A...U..A.G.C.G...G.G........U....U.....U.....Ucaa.guaU....U...A.A...U....U...AU.....U......A....A..U....U..A.G.....G.G...G.....U.....A...U...C...AA.CAAUG...AAA...C......GUACAUAUCAACC.G.U...CC.GUC..ACUAAAA................................GGAA.ACGGACUC....................................AUGGAUUUCUGGUUCGCAUGAGA.ACCAAGGGAGGAAG.G.GC...AAUU.A...U...A...G.C.A....GC.UCGA......................................A.G.A.GC.U.A..AA...GGCC
   NZ_OW485601.1     -.-.-.-.G..A..U.....C..C.C.....U.....C.G.....UU.......C...C..G.C.C.A...U.C........C....G.....G.....C.......G....G...G.C...C....C...AA.....G......C....G..U....U..A.U.....C.G...G....aG.....A...G...U...UG.UCGUG...AAG...C......GCACGUAUCAACC.G.U...CG.AAG..CUUGUUC................................GCAA.GCGCCGCC....................................ACGGCUUCCGGGCCCGCAUGGCG.ACCGUCGGUGGCCG.C.AA...GGUC.C...U...G...G.C.C....AA.CCGC......................................C.G.G.GC.C.A..AG...GGCC


   Structure         (.(.(.(.(.................................................(..(.(.(.(................................................................................................................................................................................(.((..........................................)))..((((........................................))))..............)))))............))).).)....((((.....(...(...(.(.(....((...........................................).).).)).).).......))))


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ysdD-rpmH-rnpA-yidD



Position: 261-405, Conformation: #0







97% 90% 75% 50% Nucleotide present N N N Nucleotide identify E < 0.1 Base-pair covariation E < 0.05 Helix-level covariation 97% 90% 75%

R R R A U G A A R G A C U Y C A R C C Y R C G R C G Y C A Y G G Y U U Y C G Y R Y C G Y A U G R A C R R Y G G Y C G Y R R U U R C C G Y C G Y R Y A A R G G Y 5'