yrbL



Position: 363-502, Conformation: #1







DMS reactivity > 1.0 0.0 0.4 0.7 G/U/No data
Position: 0 (position.label in template: 0.5')5' Position: 1 (position.label in template: 1.A) Reactivity: nanA Position: 2 (position.label in template: 2.A) Reactivity: nanA Position: 3 (position.label in template: 3.G) Reactivity: nanG Position: 4 (position.label in template: 4.A) Reactivity: nanA Position: 5 (position.label in template: 5.C) Reactivity: nanC Position: 6 (position.label in template: 6.A) Reactivity: nanA Position: 7 (position.label in template: 7.U) Reactivity: nanU Position: 8 (position.label in template: 8.U) Reactivity: nanU Position: 9 (position.label in template: 9.G) Reactivity: nanG Position: 10 (position.label in template: 10.C) Reactivity: nanC Position: 11 (position.label in template: 11.A) Reactivity: nanA Position: 12 (position.label in template: 12.C) Reactivity: nanC Position: 13 (position.label in template: 13.A) Reactivity: nanA Position: 14 (position.label in template: 14.A) Reactivity: nanA Position: 15 (position.label in template: 15.C) Reactivity: nanC Position: 16 (position.label in template: 16.U) Reactivity: nanU Position: 17 (position.label in template: 17.G) Reactivity: nanG Position: 18 (position.label in template: 18.C) Reactivity: nanC Position: 19 (position.label in template: 19.G) Reactivity: nanG Position: 20 (position.label in template: 20.C) Reactivity: nanC Position: 21 (position.label in template: 21.C) Reactivity: nanC Position: 22 (position.label in template: 22.A) Reactivity: nanA Position: 23 (position.label in template: 23.G) Reactivity: nanG Position: 24 (position.label in template: 24.C) Reactivity: nanC Position: 25 (position.label in template: 25.U) Reactivity: nanU Position: 26 (position.label in template: 26.A) Reactivity: nanA Position: 27 (position.label in template: 27.C) Reactivity: nanC Position: 28 (position.label in template: 28.U) Reactivity: nanU Position: 29 (position.label in template: 29.G) Reactivity: nanG Position: 30 (position.label in template: 30.A) Reactivity: nanA Position: 31 (position.label in template: 31.A) Reactivity: nanA Position: 32 (position.label in template: 32.A) Reactivity: nanA Position: 33 (position.label in template: 33.C) Reactivity: nanC Position: 34 (position.label in template: 34.A) Reactivity: nanA Position: 35 (position.label in template: 35.G) Reactivity: nanG Position: 36 (position.label in template: 36.C) Reactivity: 0C Position: 37 (position.label in template: 37.U) Reactivity: nanU Position: 38 (position.label in template: 38.G) Reactivity: nanG Position: 39 (position.label in template: 39.A) Reactivity: 0A Position: 40 (position.label in template: 40.A) Reactivity: 1A Position: 41 (position.label in template: 41.G) Reactivity: nanG Position: 42 (position.label in template: 42.C) Reactivity: 0C Position: 43 (position.label in template: 43.G) Reactivity: nanG Position: 44 (position.label in template: 44.U) Reactivity: nanU Position: 45 (position.label in template: 45.U) Reactivity: nanU Position: 46 (position.label in template: 46.A) Reactivity: 1A Position: 47 (position.label in template: 47.U) Reactivity: nanU Position: 48 (position.label in template: 48.U) Reactivity: nanU Position: 49 (position.label in template: 49.U) Reactivity: nanU Position: 50 (position.label in template: 50.G) Reactivity: nanG Position: 51 (position.label in template: 51.C) Reactivity: 0C Position: 52 (position.label in template: 52.A) Reactivity: 0A Position: 53 (position.label in template: 53.G) Reactivity: nanG Position: 54 (position.label in template: 54.G) Reactivity: nanG Position: 55 (position.label in template: 55.A) Reactivity: 1A Position: 56 (position.label in template: 56.U) Reactivity: nanU Position: 57 (position.label in template: 57.A) Reactivity: 0.5A Position: 58 (position.label in template: 58.A) Reactivity: 0.5A Position: 59 (position.label in template: 59.C) Reactivity: 0.5C Position: 60 (position.label in template: 60.C) Reactivity: 0.5C Position: 61 (position.label in template: 61.G) Reactivity: nanG Position: 62 (position.label in template: 62.U) Reactivity: nanU Position: 63 (position.label in template: 63.A) Reactivity: 1A Position: 64 (position.label in template: 64.U) Reactivity: nanU Position: 65 (position.label in template: 65.C) Reactivity: 0C Position: 66 (position.label in template: 66.G) Reactivity: nanG Position: 67 (position.label in template: 67.U) Reactivity: nanU Position: 68 (position.label in template: 68.G) Reactivity: nanG Position: 69 (position.label in template: 69.A) Reactivity: 0.5A Position: 70 (position.label in template: 70.C) Reactivity: 0.5C Position: 71 (position.label in template: 71.G) Reactivity: nanG Position: 72 (position.label in template: 72.A) Reactivity: 1A Position: 73 (position.label in template: 73.U) Reactivity: nanU Position: 74 (position.label in template: 74.G) Reactivity: nanG Position: 75 (position.label in template: 75.U) Reactivity: nanU Position: 76 (position.label in template: 76.C) Reactivity: 0C Position: 77 (position.label in template: 77.G) Reactivity: nanG Position: 78 (position.label in template: 78.C) Reactivity: 0C Position: 79 (position.label in template: 79.U) Reactivity: nanU Position: 80 (position.label in template: 80.G) Reactivity: nanG Position: 81 (position.label in template: 81.A) Reactivity: 0.5A Position: 82 (position.label in template: 82.A) Reactivity: 1A Position: 83 (position.label in template: 83.G) Reactivity: nanG Position: 84 (position.label in template: 84.C) Reactivity: 0C Position: 85 (position.label in template: 85.C) Reactivity: 0C Position: 86 (position.label in template: 86.G) Reactivity: nanG Position: 87 (position.label in template: 87.C) Reactivity: 1C Position: 88 (position.label in template: 88.A) Reactivity: 0.5A Position: 89 (position.label in template: 89.G) Reactivity: nanG Position: 90 (position.label in template: 90.A) Reactivity: 1A Position: 91 (position.label in template: 91.A) Reactivity: 0A Position: 92 (position.label in template: 92.U) Reactivity: nanU Position: 93 (position.label in template: 93.A) Reactivity: 0.5A Position: 94 (position.label in template: 94.U) Reactivity: nanU Position: 95 (position.label in template: 95.C) Reactivity: 0C Position: 96 (position.label in template: 96.C) Reactivity: 0C Position: 97 (position.label in template: 97.U) Reactivity: nanU Position: 98 (position.label in template: 98.C) Reactivity: 0C Position: 99 (position.label in template: 99.U) Reactivity: nanU Position: 100 (position.label in template: 100.G) Reactivity: nanG Position: 101 (position.label in template: 101.U) Reactivity: nanU Position: 102 (position.label in template: 102.C) Reactivity: 0C Position: 103 (position.label in template: 103.A) Reactivity: 0A Position: 104 (position.label in template: 104.C) Reactivity: 0C Position: 105 (position.label in template: 105.C) Reactivity: 1C Position: 106 (position.label in template: 106.G) Reactivity: nanG Position: 107 (position.label in template: 107.C) Reactivity: 1C Position: 108 (position.label in template: 108.A) Reactivity: 0.5A Position: 109 (position.label in template: 109.U) Reactivity: nanU Position: 110 (position.label in template: 110.C) Reactivity: 1C Position: 111 (position.label in template: 111.A) Reactivity: 1A Position: 112 (position.label in template: 112.G) Reactivity: nanG Position: 113 (position.label in template: 113.U) Reactivity: nanU Position: 114 (position.label in template: 114.G) Reactivity: nanG Position: 115 (position.label in template: 115.A) Reactivity: 0A Position: 116 (position.label in template: 116.G) Reactivity: nanG Position: 117 (position.label in template: 117.U) Reactivity: nanU Position: 118 (position.label in template: 118.C) Reactivity: 0C Position: 119 (position.label in template: 119.A) Reactivity: 0A Position: 120 (position.label in template: 120.G) Reactivity: nanG Position: 121 (position.label in template: 121.A) Reactivity: 0A Position: 122 (position.label in template: 122.G) Reactivity: nanG Position: 123 (position.label in template: 123.G) Reactivity: nanG Position: 124 (position.label in template: 124.U) Reactivity: nanU Position: 125 (position.label in template: 125.U) Reactivity: nanU Position: 126 (position.label in template: 126.A) Reactivity: 0A Position: 127 (position.label in template: 127.U) Reactivity: nanU Position: 128 (position.label in template: 128.C) Reactivity: 0C Position: 129 (position.label in template: 129.C) Reactivity: 0.5C Position: 130 (position.label in template: 130.C) Reactivity: 0C Position: 131 (position.label in template: 131.G) Reactivity: nanG Position: 132 (position.label in template: 132.G) Reactivity: nanG Position: 133 (position.label in template: 133.U) Reactivity: nanU Position: 134 (position.label in template: 134.C) Reactivity: 0C Position: 135 (position.label in template: 135.G) Reactivity: nanG Position: 136 (position.label in template: 136.U) Reactivity: nanU Position: 137 (position.label in template: 137.C) Reactivity: 0C Position: 138 (position.label in template: 138.U) Reactivity: nanU Position: 139 (position.label in template: 139.G) Reactivity: nanG Position: 140 (position.label in template: 140.C) Reactivity: 0C Position: 141 (position.label in template: 141.G) Reactivity: nanG Position: 142 (position.label in template: 142.A) Reactivity: 0A Position: 143 (position.label in template: 143.C) Reactivity: 0C Position: 144 (position.label in template: 144.A) Reactivity: 1A Position: 145 (position.label in template: 145.A) Reactivity: 1A Position: 146 (position.label in template: 146.C) Reactivity: 0.5C Position: 147 (position.label in template: 147.A) Reactivity: nanA Position: 148 (position.label in template: 148.U) Reactivity: nanU Position: 149 (position.label in template: 149.U) Reactivity: nanU Position: 150 (position.label in template: 150.G) Reactivity: nanG Position: 151 (position.label in template: 151.G) Reactivity: nanG Position: 152 (position.label in template: 152.U) Reactivity: nanU Position: 153 (position.label in template: 153.G) Reactivity: nanG Position: 154 (position.label in template: 154.A) Reactivity: nanA Position: 155 (position.label in template: 155.A) Reactivity: nanA Position: 156 (position.label in template: 156.A) Reactivity: nanA Position: 157 (position.label in template: 157.G) Reactivity: nanG Position: 158 (position.label in template: 158.C) Reactivity: nanC Position: 159 (position.label in template: 159.A) Reactivity: nanA Position: 160 (position.label in template: 160.C) Reactivity: nanC Position: 161 (position.label in template: 161.A) Reactivity: nanA Position: 162 (position.label in template: 162.U) Reactivity: nanU Position: 163 (position.label in template: 163.U) Reactivity: nanU Position: 164 (position.label in template: 164.G) Reactivity: nanG Position: 165 (position.label in template: 165.A) Reactivity: nanA Position: 166 (position.label in template: 166.U) Reactivity: nanU Position: 167 (position.label in template: 167.U) Reactivity: nanU Position: 168 (position.label in template: 168.C) Reactivity: nanC Position: 169 (position.label in template: 169.C) Reactivity: nanC Position: 170 (position.label in template: 170.A) Reactivity: nanA Position: 171 (position.label in template: 171.C) Reactivity: nanC Position: 172 (position.label in template: 172.U) Reactivity: nanU Position: 173 (position.label in template: 173.G) Reactivity: nanG Position: 174 (position.label in template: 174.G) Reactivity: nanG Position: 175 (position.label in template: 175.C) Reactivity: nanC Position: 176 (position.label in template: 176.G) Reactivity: nanG Position: 177 (position.label in template: 177.A) Reactivity: nanA Position: 178 (position.label in template: 178.C) Reactivity: nanC Position: 179 (position.label in template: 179.C) Reactivity: nanC Position: 180 (position.label in template: 180.U) Reactivity: nanU Position: 181 (position.label in template: 181.3')3' 10 20 30 50 100 150


yrbL



Position: 363-502, Conformation: #1







Retained alignments:


   NC_009792.1       CGCCGUCCUGcgccagu..........ugcugaa-aacg.......cucaa-g......cgUUAUAUCUACGAUAACCGCAUCGUC...ACCAUGACCCUGAAGCCGCAAAAUAUUCUGugUCACCGCAUUA................................................................GCGAauccGAAGCGAUCCCGGUGAUCUGCGACAAC.AUCGGCGAGAGCA............................................................CGCUGAUCC.CGCUGGCA
   NC_010572.1       CGCU------........................G................G.........-----AGCGCGGUAAGCGCAUGGUC...GAGCUGCUGAAGCAGCCGCAGUACGCCCCG..UUCCCGAUGGA................................................................GGAG....CAGGUCGUCUCGGUCUGGGCCGGCACC.ACGGGCAA-----gauggacgacgucc.......cggucgaggacauc.........................CGUCGCUUC.GA-AGCUG
   NC_013929.1       AGCU------........................G................G.........-----AGCGGGGUCAGCGUCUGGUC...GAGCUGCUGAAGCAGCCGCAGUACCAGCCG..AUGCCGACCGA................................................................GGAC....CAGGUCGUCUCCGUCUGGGCCGGUACC.ACCGGCAA-----gauggacgacgucc.......ccgucuccgacguc.........................CGCCGCUUC.GA-GAAGG
   NC_014117.1       CGCAGAACCCgg...................acg-caguucu..gaucgcc-.........---GGUGCGGGUACGCCGG-CCG--...-CGCUGCCGCAGAAAGCGCUGAAGG-----..-----------............aacgcggcuacaagggcaaguacuaucagacgcacggcgucgcgaacaacga----....-----CUUCCUGCGCGUGUGCGGCAAG.GAUUGCGAAGGCA............................................................CGUGGCUGC.--CCGCCG
   NC_016111.1       ---GACGC--c.....................gc-cuccaaggcgcagcucG.........-----CCCGUGGUCAGCGCAUGGUC...GAACUGCUCAAGCAGGGCCAGUACGCGCCG..UUCCCGGUCGA................................................................GGAG....CAGGUCGUCUCCAUCUGGGCCGGCACC.AACGGCAA-----gauggacgaggucc.......ccgucgaggacauc.........................CGCCGCUUC.GA-GCGUG
   NC_017168.1       AGUGAAAGCG........................G................U.........UGAAACACUGGAUAACUGCAUCG--...AACAAGUGGUUGCAGCAGUGAAAGCAGC--..----CGAU---g.........guca...............................................auu----....--GUUGAUCACCGCUGACCACGGCAAC.GCUGAGCAAA--U............................................................GCGUGAC--.--CCGGCA
   NC_019792.1       UGGCUGAUUCcgacgg............cgaaac-cga.........cgag-a......cgGAGUCGAGACAAGAGUCGGACGGUUccaUCGAUGACGCCGAUGUCG---ACCG-CGUCacCGUCCGCAUCA................................................................CGCG...cGACGUUGGCCCGAUCCUCGGCGUCGAC.GACCGCGAGUACA............................................................CGC--UCUC.GACCGACG
   NC_021252.1       AGCU------........................C................G.........-----AGCGCGG-UGCCCGCCUGUA..cGAGGUGCUCAAGCAGCCGCAGUACUCCCCG..AUCCCGGUCGA................................................................GGAG....CAGGUCGUCACGGUGUACCUCGGCACC.AACGGGCACUACG............................................................ACUCGGUCCcGACCGAGG
   NZ_AP018165.1     AGCU------........................G................G.........-----AGCGUGGCGCCCGCCUGGUC...GAGCUGCUCAAGCAGCCGCAGAACUCGCCG..UACCCGGUCGA................................................................GGAG....CAGGUUGUCGCGAUCUACCUGGGCACC.GGCGG---A----...................................ca.....................cc--UCGACUC.GG-UGCCG
   NZ_AP018920.1     CGCCU-----........................-cggccgc..cacgcugG.........-----GCCGCGGUGAGCGCCUGGUG...GAGCUGCUCAAGCAGGCGCAGUACGCGCCG..GUCGCGGUGCA................................................................GGAC....CAGGUCGUCUCGAUCUGGCUGGGCACC.AGCGGCAAG----cucga.........................cucgg.........................UGCCGGU--.CGCCGACG
   NZ_AP022573.1     AGCU------........................G................G.........-----AGCGCGGCGAACGGCUGGUC...GAGCUGCUCAAGCAAUCGCAGUACCAACCG..AUGCCGGUUGA................................................................GGAG....CAGGUGGUUUCGAUCUUCCUGGGCACC.GGCG---------gccacuuggacucggugccggucgaggacgucagg.........................---CGCUUC.GA-GACCG
   NZ_AP022591.1     AGCU------........................G................G.........-----ACCGCGGCGCCCGGCUCGUC...GAGUUGCUCAAGCAGCCGCAGAACAGCCCG..AUGCCGGUCGA................................................................GGAA....CAGGUCGUCGCGAUCUUCCUGGGCACC.CGAGGCCA-----ccugg.........................auucgg.......................u--UCCCGUC.GA-AGACG
   NZ_AP023359.1     CGCGUGACCA........................Gc..............u-.........-GG--CCCGCGGUGCCCGCCUGGUC...GAGCUGCUCAAGCAGACGAACUACACCCCG..UUCCCGGUCGA................................................................GGAG....CAGGUGGUGUCGGUGUGGACCGGCACC.GAGGGCAAG----cu..............................cga.........................CGACGUCGC.CGUCGGCG
   NZ_CP007220.1     AGCU------........................G................G.........-----AGCGUGGUGCCCGCCUGGUC...GAACUGCUCAAGCAGCCGCAGAACUCGCCG..UACCCGGUCGA................................................................GGAG....CAGGUUGUCGCGAUCUACCUGGGUACC.GGCGG---A----...................................ca.....................cc--UCGACUC.GG-UGCCG
   NZ_CP008953.1     AGCU------........................C................G.........-----AGCGCGG-UGCCCGCCUGUA..cGAGGUGCUCAAGCAGCCGCAGUACUCGCCG..AUCCCGGUCGA................................................................GGAG....CAGGUCGUCACGGUGUACCUCGGCACG.AACGGU-------cacu..........................ucgac.........................-ACCGUUCC.CACCGAGG
   NZ_CP010271.1     AGCU------........................G................G.........-----AGCGCGGUGCUCGUCUGGUC...GAGCUGCUCAAGCAGCCGCAGAACUCGCCG..UACCCGGUCGA................................................................GGAG....CAGGUUGUCGCGAUUUACCUGGGCACC.GGUGG--A-----ca..............................ccugg.....................ac--UCGGUGCcGGUCGGCG
   NZ_CP011269.1     CGACGAGUCGu......................c-ga............ag-........aUGUAGUUCGCG-GCGGCGUACCG--...-----GUUGGUGAAACCGAGGAACC-CCGA..CGAUCGGUG--................................................................AGCC....UCGGUGGUCCCGGUCUUGCCCGACAUC.GGC----------..................................a.........................----GCUUC.--CAGCCG
   NZ_CP014070.2     UGCCGUGCUGcgucag...........cugcuga-agacg......cuaaa-a......cgCUACCUGCGUGACAACCAUAUCGUC...ACCAUGACGCUGAAACCACAGAACAUUCUUugUCACCGUAUCA................................................................GCGAaucgGAAGUGGUGCCGGUGGUUUGCGAUAAU.AUUGGCGAAGGGA............................................................CGUUGAUCC.CGCUGGCG
   NZ_CP016174.1     AGCU------........................C................G.........-----AGCGUGGUGCUCGC-CUGUA..cGAGGUGCUCAAGCAGCCGCAGUACUCGCCG..AUCCCGGUCGA................................................................GGAG....CAGGUCGUCACGGUGUACCUCGGCACG.AACGGU-------cacu..........................ucgac.........................-ACCGUUCC.CACCGAGG
   NZ_CP020388.1     CGCA----CGcuucgccaau....ugcugaaagc-................-gcugaaaacCUAUCUGUAUGAAAAUCGCAUCGUA...ACCAUGACGCUGAAGCCGCAGAACAUCCUUugCCAGCGCAUCA................................................................GCGAgucgGAAGUGGUGCCGGUGGUCUGCGACAAC.AUUGGCGAGAGCA............................................................CGUUUUUGC.CCGUGGCG
   NZ_CP020563.1     CGCU------........................G................G.........-----AGCGCGGCAAGCGCAUGGUC...GAGCUGCUGAAGCAGCCGCAGUACGCCCCG..UUCCCGAUGGA................................................................GGAG....CAGGUCGUCUCCGUCUGGGCCGGUACC.ACGGGCAA-----gauggacgacgucc.......cggucgaggacauc.........................CGUCGCUUC.GA-GGCCG
   NZ_CP020570.1     CGCU------........................G................G.........-----AGCGCGGUAAGCGCAUGGUC...GAGCUGCUGAAGCAGCCGCAGUACGCCCCG..UUCCCGAUGGA................................................................GGAG....CAGGUCGUCUCGGUCUGGGCCGGCACC.ACGGGCAA-----gauggacgacgucc.......cggucgaggacauc.........................CGUCGCUUC.GA-GAGCG
   NZ_CP020700.1     ----------........................Caaggcc....ucccugG.........-----AGCGCGGUAAGCGCAUGGUC...GAGCUGCUGAAGCAGCCGCAGUACGAGCCG..AUGCGCACCGA................................................................GGAC....CAGGUCGUCUCCGUCUGGGCCGGUACC.ACCGGC--A----gg..............................auggacgacgucccgguucaggacaucc-GCCGCUUC.GA-GCGUG
   NZ_CP023202.1     CGCU------........................G................G.........-----AGCGCGGCAAGCGCAUGGUG...GAACUGCUGAAGCAGGGCCAGUACGCGCCG..UUCUCCACGGA................................................................GAAC....CAGGUCGUCUCCAUCUGGGCCGGCACC.ACCGGCAA-----gauggacgacgugc.......ccgucgaggacauc.........................CGCCGCUUC.GA-GAGCG
   NZ_CP023695.1     AGCU------........................C................G.........-----AGCGCGGCCAGCGCAUGGUC...GAACUGCUUAAGCAGCCGCAGUACGAGCCG..AUGGCGACCGA................................................................GGAC....CAGGUCGUCUCCGUGUGGGCCGGUACCaCCGGUCGCAUGGA............................................................CGACGUGCC.GGUCAACG
   NZ_CP023702.1     CGCU------........................G................G.........-----AGCGCGGCAAGCGCAUGGUC...GAGCUGCUGAAGCAGCCGCAGUACGCCCCG..UUCCCGAUGGA................................................................GGAG....CAGGUCGUCUCCGUCUGGGCCGGCACG.ACGGGCAA-----gauggacgacgucc.......cggucgaggacauc.........................CGCCGCUUC.GA-GACCG
   NZ_CP024633.1     ---------G.......................a-agg.........cccaG.........CUGGAGCGCGGCGCGCGCC-UGGUG...GAGCUGCUCAAGCAGUCGCAGAACUCGCCG..UACCCGGUCGA................................................................GGAG....CAGGUCGUGGCGAUCUACCUCGGCACC.GGUGG--------............................................................--UCACCUC.GACUCGGU
   NZ_CP024957.1     CGCU------........................G................G.........-----AGCGCGGCAAGCGCAUGGUC...GAGCUUCUGAAGCAGCCGCAGUACGCCCCG..UUCCCGAUGGA................................................................GGAG....CAGGUCGUCUCGGUCUGGGCCGGCACC.ACGGGCAA-----gauggacgacgucc.......cggucgaggacauc.........................CGCCGCUUC.GA-GUCCG
   NZ_CP026304.1     CGCU------........................G................G.........-----AGCGCGGUAAGCGCAUGGUC...GAGCUGCUGAAGCAGGGCCAGUACCAGCCG..AUGCCCGUCGA................................................................GGAG....CAGGUCGUCUCCGUCUGGGCCGGCACC.ACCGGCAA-----gauggacgagguuc.......cggucgccgacauc.........................CGCCGCUUC.GA-GAGCG
   NZ_CP026652.1     AGCU------........................G................G.........-----AGCGCGGUCAGCGCAUGGUC...GAGCUGCUCAAGCAGCCGCAGUACCAGCCG..AUGCCGACCGA................................................................GGAC....CAGGUCGUCUCCGUGUGGGCCGGUACC.ACCGGCAAG----augga.........................cgacg.........................UGCCGGU--.CGCGGACA
   NZ_CP027306.1     CGCU------........................G................G.........-----AGCGCGGUAAGCGCAUGGUC...GAGCUGCUGAAGCAGCCGCAGUACCAGCCG..UACCCGGUCGA................................................................GGAG....CAGGUCAUCUCCAUCUGGGCCGGCACC.AACGGCAA-----gauggacgacgucc.......cggucgaggacauc.........................CGUCGCUUC.GA-GAGCG
   NZ_CP028130.1     CGCGAUGUUCgccucggaccuugacgcugccucg-................-cgcc.gucaGCUUGCCCGCGGAGCCCGCCUCACA...GAACUGCUCAAGCAGCCGCAAUACUCGCCG..UACCCGGUGGA................................................................GGAG....CAGGUCGUCUCGAUUUGGGCCGGCACC.AACGGCAAG----cucga.........................cgagg.........................UGCCGGUGC.--CUGACG
   NZ_CP029254.1     CGCCCU----........................G................G.........-----AGCGCGGCAAGCGCAUGGUC...GAGCUGCUGAAGCAGCCGCAGUACGCCCCG..UACUCGACGGA................................................................GAAC....CAGGUCGUCUCCAUCUGGGCCGGCACC.ACCGGCAA-----gauggacgacgucc.......cggucgaggacauc.........................CGCCGCUUC.GA-GUCCG
   NZ_CP031194.1     GGCUUCCCU-........................G................G.........-----AGCGCGGCAAGCGCAUCGUC...GAGCUGCUGAAGCAGCCGCAGUACGCCCCG..UACCCGGUGGA................................................................GGAG....CAGGUCGUCUCCGUCUGGGCCGGCACC.ACCGGCAA-----gauggacgacguac.......cggucgaggacauc.........................CGCCGCUUC.GA-GAGCG
   NZ_CP031455.1     AGCU------........................G................G.........-----AGCGCGGCAAGCGCAUGGUC...GAGCUGCUGAAGCAGGGCCAGUACGCCCCG..UACUCGGUCGA................................................................GGAC....CAGGUCGUCUCCGUCUGGGCCGGCACC.ACCGGCAAG----augga.........................cgacg.........................UGCCGGU-C.GA-GGACA
   NZ_CP034181.1     ---------G.......................a-agg.........cucaG.........CUCGAGCGUGGUGCUCGUC-UGGUC...GAGCUGCUCAAGCAGCCGCAGAACUCCCCG..UACCCGGUUGA................................................................GGAG....CAGGUCGUCGCCAUCUACCUGGGCACC.GGUGG--------............................................................--UCAUCUC.GACUCGGU
   NZ_CP034279.1     CGCU------........................G................G.........-----AGCGCGGCAAGCGCAUGGUC...GAGCUGCUGAAGCAGCCGCAGUACCAGCCG..AUGGCGACCGC................................................................CGAC....CAGGUCGUGUCCGUCUGGGCCGGUACC.ACGGGCAA-----gauggacgacgucc.......cggucguggacauc.........................CGUCGCUUC.GA-GCGCG
   NZ_CP034687.1     AGCU------........................C................G.........-----AGCGUGGCCAGCGCAUGGUC...GAGCUGCUGAAGCAGGCCCAGUACCAGCCG..AUGUCGACCGA................................................................GGAC....CAGGUCGUCUCGGUGUGGGCCGGCACC.ACCGGCAAG----augga.........................cgagg.........................UGCCGGU--.CGCCGACA
   NZ_CP040428.1     GAGACUGCUGcgccaga..........cgcugcu-ccag.......uugaa-g......cgCUGGCUCGCCGAGCACCGCAUCGUC...ACCAUGAACCUGAAGCCGCAGAACAUUCUGugCCGCCGCCUGA................................................................GCCCcacaGAGGUCAUACCGGUGGUGGUGGAUAAU.AUCGGGGAAGCCU............................................................CCUUACUGC.CGCUGGCA
   NZ_CP040752.1     CGCU------........................G................G.........-----AGCGCGGCAAGCGCAUGGUC...GAGCUGCUGAAGCAGGCCCAGUACGCCCCG..UACUCCACCGA................................................................GGAC....CAGGUCGUCUCCAUCUGGGCCGGCACC.ACCGGCAA-----gauggacgaggucc.......cggucgaggacauc.........................CGCCGCUUC.GA-GCGCG
   NZ_CP042266.1     ----------........................Caaggcc....ucccugG.........-----AGCGCGGUAAGCGCAUGGUC...GAGCUGCUGAAGCAGCCGCAGUACGAGCCG..AUGCGCACCGA................................................................GGAC....CAGGUCGUCUCCGUGUGGGCCGGCACC.AACGGCAA-----gauggacgacguuc.......cgguccaggacauc.........................CGCCGCUUC.GA-GCGUG
   NZ_CP045096.1     AGCU------........................G................G.........-----AGCGCGGUCAGCGUCUGGUC...GAGCUGCUCAAGCAGCCGCAGUACCAGCCG..AUGCCGACCGA................................................................GGAC....CAGGUCGUCUCCGUGUGGGCCGGUACC.ACCGGCAAG----augga.........................cgacg.........................UCCCGGU--.CGCCGACG
   NZ_CP045643.1     AGCU------........................G................G.........-----AGCGCGGUCAGCGUCUGGUC...GAGCUGCUCAAGCAGCCGCAGUACCAGCCG..AUGCCGACCGA................................................................GGAC....CAGGUCGUCUCCGUCUGGGCCGGUACC.ACCGGCAAG----augga.........................cgacg.........................UACCGGU--.CUCCGACG
   NZ_CP046909.1     CGCAGCACCCcga..................cgc-ggug........cuga-u.......cGCGGGUGCGGGCACGCCGG-CCG--...-CGUUGCCGCAGAAAACGCUCAAGG-----..-----------............agcgcggcuacgcgggcaaguacuaccagacgcacggcguggccaacaacga----....-----CUUCCUGCGCGUGUGCGGCAAG.GACUGCGACGGCA............................................................CGUAUCUGC.--CCGCCG
   NZ_CP048882.1     CGCU------........................G................G.........-----AGCGCGGCAAGCGGAUGACC...GAGCUGCUCAAGCAGUCGCAGUACAACCCG..UUCUCGACCGA................................................................GGAC....CAGGUCGUCUCCGUCUGGUCCGGCACC.AACGGCAA-----gauggacgacgucc.......ccgucgaggacauc.........................CGCCGCUUC.GA-GCGCG
   NZ_CP051486.1     CGCU------........................G................G.........-----AGCGCGGUAAGCGCAUGGUC...GAGCUGCUGAAGCAGCCGCAGUACGCCCCG..UUCCCGAUGGA................................................................GGAG....CAGGUCGUCUCCGUCUGGGCCGGCACC.ACGGGCAA-----gauggacgacgucc.......cggucgaggacauc.........................CGCCGCUUC.GA-GAGCG
   NZ_CP054926.1     CGCU------........................G................G.........-----AGCGCGGUAAGCGCAUGGUC...GAGCUGCUGAAGCAGCCCCAGUACGCCCCG..UUCCCGAUGGA................................................................GGAG....CAGGUCGUCUCCGUCUGGGCCGGCACC.ACGGGCAA-----gauggacgacgucc.......cggucgaggacauc.........................CGUCGCUUC.GA-GGCCG
   NZ_CP055055.1     UGCACAACUGcgccaau..........uacugaa-acag.......cugaa-g......cgUUAUUUGCAGGAUAACCGUAUCGUG...ACGAUGUCGCUGAAGCCGCAGAAUAUUCUCugUCAUCGCAUCA................................................................GUGAgucaGAGGUUAUCCCCGUCGUCUGCGACAAC.AUUGGUGAAAGCA............................................................CAUUGAUUC.CACUGGCG
   NZ_CP055292.1     UGCACAACUGcgccagc..........uacugaa-acag.......cugaa-g......cgUUAUUUGCAGGAUAACCGUAUCGUG...ACGAUGUCGCUGAAGCCGCAGAAUAUCCUCugUCACCGCAUCA................................................................GUGAgucaGAGGUUAUCCCGGUCGUCUGCGACAAC.AUUGGUGAAAGCA............................................................CAUUGAUUC.CACUGGCG
   NZ_CP060825.1     CGCU------........................G................G.........-----AGCGCGGCAAGCGCAUGGUC...GAGCUGCUGAAGCAGGCCCAGUACCAGCCG..AUGUCCACCGA................................................................GAAC....CAGGUCGUCUCCGUCUGGGCCGGCACC.ACCGGCAA-----gauggacgacgucc.......cgguccaggacauc.........................CGCCGCUUC.GAGCGG-G
   NZ_CP065050.1     GGCUUCCCU-........................G................G.........-----AGCGCGGUGCGCGCAUGGUC...GAGCUGCUGAAGCAGUCGCAGUACGCCCCG..UUCUCCACCGA................................................................GGAC....GAGAUCGUCUCCAUCUGGUCCGGCACC.ACCGGCAA-----gauggacgaugucc.......cggucgaggacauc.........................CGCCGCUUC.GAGCGG-G
   NZ_CP066075.1     CGCAGAACCCgga.................cgcc-gug..........cug-a......ucGCGGGUGCGGGCACACCGG-CCG--...-CGCUGCCGCAAAAAACGCUCAAGG-----..-----------............aacguggcuacaagggcaaguacuaucagacgcacggcgucgcgaauaacga----....-----CUUCCUGCGCGUGUGCGGCAAG.GAUUGCGAAGGCA............................................................CGUAUCUGC.--CGGCCG
   NZ_CP070290.1     CACACAAUUGcgccagu..........uacugaa-acaa.......cugaa-a......cgUUAUUUACAGGAUAAUCGCAUCGUG...ACGAUGUCGCUGAAGCCACAAAACAUCCUCugCCAUCGCAUCA................................................................GCGAaucaGAGAUUGUCCCUGUCGUCUGCGACAAU.AUUGGGGAAAGUA............................................................CGCUAAUUC.CACUGGCG
   NZ_CP071070.1     UGCCGUUUUGcgucaau..........uacugaa-gaag.......cugaa-g......cgCUAUCUGCGUGACAACCAUAUCGUG...ACCAUGACGCUGAAGCCGCAGAAUAUCCUCugCCAUCGCAUCA................................................................GUGAauccGAGGUGGUGCCCGUCGUGUGCGAUAAU.AUUGGUGAAGGAA............................................................CGCUGAUCC.CGCUGGCC
   NZ_CP072941.1     CGCU------........................G................G.........-----AGCGCGGUGCGCGCAUGGUC...GAGCUGCUGAAGCAGCCGCAGUACGCCCCG..UUCUCCACCGA................................................................GGAC....GAGAUCGUCUCCAUCUGGGCCGGCACC.ACGGGCAA-----gauggacgacguuc.......cggucgaggacauc.........................CGCCGCUUC.GAGCGG-G
   NZ_CP074352.1     GAAGGUGCUGcgccaua..........ugcugaa-agcg.......cucag-a......cgCUAUAUGGAAAACAACCGGAUUGUG...ACAAUGACGCUGAAGCCGCAGAACGUGCUGugCCGCCGUAUCA................................................................GCGCcucaGAAGUGGUACCGGUGAUCUGUGACAAU.AUCGGGGAAGGCA............................................................CGCUGAUCC.CACUGGCG
   NZ_CP080095.1     GGCGCAGCACcc...................gga-ugcggugcugaucgcc-.........---GGCGCCGGCACGCCGG-CCG--...-CACUGCCGCAGCGCACGCUCAAGG-----..-----------............agcgcggcuacaacgguaaguacuaucagacgcauggcgucgcgaacaacga----....-----CUUCCUGCGUGUCUGCGGCAAG.GAUUGCGAUGGCA............................................................CGUAUCUGC.--CGGCCG
   NZ_CP082833.1     CGUAUUACGGcaguug............cugagg-cgg.........cuga-ag.....cgUUAUCUGCGCGACAAUCAUAUCGUC...ACAAUGACCCUGAAACCGCAGAACAUUCUCugCCAUCGCAUCA................................................................ACGAaucaGAAGUCGUGCCGGUCGUGUGCGAUAAC.AUUGGCGAAGGGA............................................................CGCUGAUCC.CGCUGGCG
   NZ_CP083590.1     CGCU------........................G................G.........-----AGCGCGGCAAGCGCAUGGUC...GAGCUGCUGAAGCAGACCCAGUACGCGCCG..UUCGCCACCGA................................................................GGAC....CAGGUCGUGGCGAUCUGGGCCGGCACC.ACCGGCAA-----gauggacgacgucc.......cggucgaggacauc.........................CGCCGCUUC.GA-GCGCG
   NZ_CP083638.1     CGUGCUACGUcaguuacu........gaaaaagc-................-uga..agaaAUAUCUGCACGAUAACUAUAUCGUC...ACCAUGACCCUGAAACCACAGAACAUUCUCugCCAUCGUAUCA................................................................GCGAgucuGAAGUCGUGCCGGUCGUAUGCGACAAU.AUUGGUGAAGGCA............................................................CACUGAUCC.CGUUGGCA
   NZ_CP084874.1     AGCGGCAGUGaa....................ag-...............c-g......guUGAAGCGCUGGAUCACUGCAUCG--...ACCAGGUCGCUCAGGCGGUGGAAUCCGUUG..---GCG-----...........g....................................................CCAG....CUGCUGAUCACUGCCGACCACGGCAAC.GCCGAGCAGA--U............................................................GCGCGAC--.--CCGGCU
   NZ_CP086102.1     CGCU------........................G................G.........-----AGCGCGGUAAGCGCAUGGUC...GAGCUGCUGAAGCAGCCGCAGUACGCCCCG..UUCCCGAUGGA................................................................GGAG....CAGGUCGUCUCGGUCUGGGCCGGCACC.ACGGGCAA-----gauggacgacgucc.......cggucgaggacauc.........................CGUCGCUUC.GA-GAGCG
   NZ_CP086119.1     AGCU------........................C................G.........-----AGCGCGGCCAGCGCAUGGUC...GAACUGCUCAAGCAGCCGCAGUACGAGCCG..AUGGCCACCGA................................................................GGAC....CAGGUCGUCUCCGUGUGGGCCGGUACCaCCGGUCGCAUGGA............................................................CGACGUGCC.GGUGGGUG
   NZ_CP087880.1     GGUUGUGUUGcgucagau........ccugcgca-cgu..........uga-ag....aagUACAUCACCG-AAAACCACAUUGUG...ACCAUGACGCUGAAACCGGCCAAUAUUCUGugUCAUCGCAUCA................................................................GCGAaucgGAAGUGGUGCCGGUUAUCUGCGACAAC.AUCGGCGAAUCAA............................................................CCUUUAUUC.CACUGGCC
   NZ_CP088285.1     GAUCGGGCUG........................C................A.........CACCGUGUUCGAGCACCACGCGG--...-CGAUGACGGAGGUGUCGCUGGAGGCCUUC.aUCCACGAAUAC................................................................CGGC...uGA--CCUUUCCGAUCGGCGUCGACGAG.GCCGGCGACGGCA............................................................CGCCGAUCC.--CCGUCA
   NZ_CP092488.2     ---------G.......................a-agg.........cgcaG.........CUGGAUCGCGGUGAACGGC-UGGUC...GAGCUGCUCAAGCAGCCGCAGUACCACCCG..GCGCCGGUCGA................................................................GGAG....CAGGUGGUGUCGAUCUACCUCGGCACC.GGUGG--------............................................................--CCACCUC.GACUCGGU
   NZ_CP093334.1     GGUGUCAUGGaggcgg...........caauuaa-................-agc...cguUGAAACGCUGGACAAUUGCAUCG--...AUCAGGUUGCCAAAGCGGUAGAAUCCGUCG..-----------gcgg....ccag....................................................----....CUGCUGAUUACCGCCGAUCAUGGUAAC.GCUGAACAGA--U............................................................GCGCGAU--.--CCGGCU
   NZ_CP102850.1     UGGUCGACAGcgagccac.......gccccggua-cgac.......cgaau-cc.....ggCCAUCACCUCG-UCG-CAGAUCAUC...ACGAUGCCGUAGCGAUCGCAGA----UCUC.gCGGACG-----...........c....................................................CCGC....GAGAU--AUCCGGGCGGCGGCGGCAUG.AUUCCCGAGGUGC............................................................CGGGAAU--.GG-UCUCG
   NZ_CP103060.1     CGCU------........................G................G.........-----AGCGCGGUAAGCGCAUGGUC...GAGCUGCUCAAGCAGCCGCAGUACCAGCCG..UUCGCCACCGA................................................................GGAC....CAGGUCGUCUCCAUCUGGUCCGGCACC.AACGGCAA-----gauggacgacgucc.......cggucgaggacauc.........................CGCCGCUUC.GA-GCGCG
   NZ_CP109672.1     CGCU------........................G................G.........-----AGCGCGGUUCGCGCAUGGUC...GAGCUGCUGAAGCAGACGCAGUACGCCCCG..UACGCCACCGA................................................................GGAU....CAGGUCGUCUCCAUCUGGGCCGGCACC.AACGGCAA-----gauggacgaugucc.......cggucgaggacguc.........................CGCCGCUUC.GA-GCGCG
   NZ_LS483470.1     -GAAGACCUGa......................a-................-g......gcCUAUCUGUUUCGCAACCGCAUUGUG...ACAAUGACCAUCAAACCCCAGAAUA-UCCU..GCUGCGUA---agaaugcaucgg....................................................GAGA....AAAG-CGUUU-GAUUAUUGUGGAUAAU.AUCGGUGAAAGCG............................................................CGCUAAUUC.CGCUGGCG


   Structure         ((((.....(...................................................)....)))).......(((...(((........(((((....((((....(((.((((..((((.......................................................................))))....)))).)))..)))).....)))))....(((((((..................................................................)))))))...)))..)))


Back to top


yrbL



Position: 363-502, Conformation: #1







97% 90% 75% 50% Nucleotide present N N N Nucleotide identify E < 0.1 Base-pair covariation E < 0.05 Helix-level covariation 97% 90% 75%

G C G R R C G Y U G Y R U G Y G A R Y C G C R G A Y C Y C G R A R R U R U Y Y C R U Y C G R C A Y R Y G G A Y Y R U C G C R 5'