yljB-clpS-clpA



Position: 1851-1985, Conformation: #0







DMS reactivity > 1.0 0.0 0.4 0.7 G/U/No data
Position: 0 (position.label in template: 0.5')5' Position: 1 (position.label in template: 1.U) Reactivity: nanU Position: 2 (position.label in template: 2.C) Reactivity: nanC Position: 3 (position.label in template: 3.C) Reactivity: nanC Position: 4 (position.label in template: 4.A) Reactivity: nanA Position: 5 (position.label in template: 5.G) Reactivity: nanG Position: 6 (position.label in template: 6.A) Reactivity: nanA Position: 7 (position.label in template: 7.G) Reactivity: nanG Position: 8 (position.label in template: 8.A) Reactivity: nanA Position: 9 (position.label in template: 9.A) Reactivity: nanA Position: 10 (position.label in template: 10.G) Reactivity: nanG Position: 11 (position.label in template: 11.A) Reactivity: nanA Position: 12 (position.label in template: 12.G) Reactivity: nanG Position: 13 (position.label in template: 13.U) Reactivity: nanU Position: 14 (position.label in template: 14.G) Reactivity: nanG Position: 15 (position.label in template: 15.U) Reactivity: nanU Position: 16 (position.label in template: 16.U) Reactivity: nanU Position: 17 (position.label in template: 17.U) Reactivity: nanU Position: 18 (position.label in template: 18.C) Reactivity: nanC Position: 19 (position.label in template: 19.U) Reactivity: nanU Position: 20 (position.label in template: 20.C) Reactivity: nanC Position: 21 (position.label in template: 21.A) Reactivity: nanA Position: 22 (position.label in template: 22.G) Reactivity: nanG Position: 23 (position.label in template: 23.A) Reactivity: nanA Position: 24 (position.label in template: 24.G) Reactivity: nanG Position: 25 (position.label in template: 25.U) Reactivity: nanU Position: 26 (position.label in template: 26.G) Reactivity: nanG Position: 27 (position.label in template: 27.A) Reactivity: nanA Position: 28 (position.label in template: 28.U) Reactivity: nanU Position: 29 (position.label in template: 29.C) Reactivity: nanC Position: 30 (position.label in template: 30.G) Reactivity: nanG Position: 31 (position.label in template: 31.U) Reactivity: nanU Position: 32 (position.label in template: 32.G) Reactivity: nanG Position: 33 (position.label in template: 33.A) Reactivity: nanA Position: 34 (position.label in template: 34.U) Reactivity: nanU Position: 35 (position.label in template: 35.A) Reactivity: 0A Position: 36 (position.label in template: 36.C) Reactivity: 0C Position: 37 (position.label in template: 37.C) Reactivity: 0.5C Position: 38 (position.label in template: 38.C) Reactivity: 0C Position: 39 (position.label in template: 39.U) Reactivity: nanU Position: 40 (position.label in template: 40.G) Reactivity: nanG Position: 41 (position.label in template: 41.A) Reactivity: 0.5A Position: 42 (position.label in template: 42.A) Reactivity: 0.5A Position: 43 (position.label in template: 43.A) Reactivity: 0.5A Position: 44 (position.label in template: 44.A) Reactivity: 0A Position: 45 (position.label in template: 45.A) Reactivity: 0A Position: 46 (position.label in template: 46.C) Reactivity: 0C Position: 47 (position.label in template: 47.C) Reactivity: 0C Position: 48 (position.label in template: 48.U) Reactivity: nanU Position: 49 (position.label in template: 49.C) Reactivity: 0.5C Position: 50 (position.label in template: 50.G) Reactivity: nanG Position: 51 (position.label in template: 51.G) Reactivity: nanG Position: 52 (position.label in template: 52.C) Reactivity: 0C Position: 53 (position.label in template: 53.G) Reactivity: nanG Position: 54 (position.label in template: 54.A) Reactivity: 1A Position: 55 (position.label in template: 55.U) Reactivity: nanU Position: 56 (position.label in template: 56.C) Reactivity: 0C Position: 57 (position.label in template: 57.G) Reactivity: nanG Position: 58 (position.label in template: 58.C) Reactivity: 0C Position: 59 (position.label in template: 59.U) Reactivity: nanU Position: 60 (position.label in template: 60.U) Reactivity: nanU Position: 61 (position.label in template: 61.G) Reactivity: nanG Position: 62 (position.label in template: 62.A) Reactivity: 0.5A Position: 63 (position.label in template: 63.A) Reactivity: 0.5A Position: 64 (position.label in template: 64.A) Reactivity: 1A Position: 65 (position.label in template: 65.A) Reactivity: 1A Position: 66 (position.label in template: 66.U) Reactivity: nanU Position: 67 (position.label in template: 67.G) Reactivity: nanG Position: 68 (position.label in template: 68.C) Reactivity: 1C Position: 69 (position.label in template: 69.U) Reactivity: nanU Position: 70 (position.label in template: 70.G) Reactivity: nanG Position: 71 (position.label in template: 71.G) Reactivity: nanG Position: 72 (position.label in template: 72.U) Reactivity: nanU Position: 73 (position.label in template: 73.C) Reactivity: 0C Position: 74 (position.label in template: 74.U) Reactivity: nanU Position: 75 (position.label in template: 75.U) Reactivity: nanU Position: 76 (position.label in template: 76.C) Reactivity: 0C Position: 77 (position.label in template: 77.G) Reactivity: nanG Position: 78 (position.label in template: 78.G) Reactivity: nanG Position: 79 (position.label in template: 79.U) Reactivity: nanU Position: 80 (position.label in template: 80.C) Reactivity: 0C Position: 81 (position.label in template: 81.A) Reactivity: 0A Position: 82 (position.label in template: 82.G) Reactivity: nanG Position: 83 (position.label in template: 83.G) Reactivity: nanG Position: 84 (position.label in template: 84.A) Reactivity: 1A Position: 85 (position.label in template: 85.U) Reactivity: nanU Position: 86 (position.label in template: 86.A) Reactivity: 0A Position: 87 (position.label in template: 87.A) Reactivity: 0.5A Position: 88 (position.label in template: 88.A) Reactivity: 1A Position: 89 (position.label in template: 89.G) Reactivity: nanG Position: 90 (position.label in template: 90.C) Reactivity: 0C Position: 91 (position.label in template: 91.C) Reactivity: 0C Position: 92 (position.label in template: 92.A) Reactivity: 1A Position: 93 (position.label in template: 93.U) Reactivity: nanU Position: 94 (position.label in template: 94.U) Reactivity: nanU Position: 95 (position.label in template: 95.G) Reactivity: nanG Position: 96 (position.label in template: 96.A) Reactivity: 1A Position: 97 (position.label in template: 97.G) Reactivity: nanG Position: 98 (position.label in template: 98.G) Reactivity: nanG Position: 99 (position.label in template: 99.C) Reactivity: 0C Position: 100 (position.label in template: 100.G) Reactivity: nanG Position: 101 (position.label in template: 101.C) Reactivity: 0C Position: 102 (position.label in template: 102.U) Reactivity: nanU Position: 103 (position.label in template: 103.G) Reactivity: nanG Position: 104 (position.label in template: 104.A) Reactivity: 0A Position: 105 (position.label in template: 105.C) Reactivity: 0C Position: 106 (position.label in template: 106.U) Reactivity: nanU Position: 107 (position.label in template: 107.G) Reactivity: nanG Position: 108 (position.label in template: 108.A) Reactivity: 0A Position: 109 (position.label in template: 109.A) Reactivity: 0A Position: 110 (position.label in template: 110.G) Reactivity: nanG Position: 111 (position.label in template: 111.C) Reactivity: 0C Position: 112 (position.label in template: 112.C) Reactivity: 0C Position: 113 (position.label in template: 113.A) Reactivity: 0.5A Position: 114 (position.label in template: 114.U) Reactivity: nanU Position: 115 (position.label in template: 115.U) Reactivity: nanU Position: 116 (position.label in template: 116.A) Reactivity: 1A Position: 117 (position.label in template: 117.A) Reactivity: 1A Position: 118 (position.label in template: 118.G) Reactivity: nanG Position: 119 (position.label in template: 119.A) Reactivity: 1A Position: 120 (position.label in template: 120.U) Reactivity: nanU Position: 121 (position.label in template: 121.G) Reactivity: nanG Position: 122 (position.label in template: 122.G) Reactivity: nanG Position: 123 (position.label in template: 123.C) Reactivity: 1C Position: 124 (position.label in template: 124.G) Reactivity: nanG Position: 125 (position.label in template: 125.C) Reactivity: 0C Position: 126 (position.label in template: 126.G) Reactivity: nanG Position: 127 (position.label in template: 127.U) Reactivity: nanU Position: 128 (position.label in template: 128.G) Reactivity: nanG Position: 129 (position.label in template: 129.C) Reactivity: 0C Position: 130 (position.label in template: 130.A) Reactivity: 0.5A Position: 131 (position.label in template: 131.G) Reactivity: nanG Position: 132 (position.label in template: 132.G) Reactivity: nanG Position: 133 (position.label in template: 133.U) Reactivity: nanU Position: 134 (position.label in template: 134.U) Reactivity: nanU Position: 135 (position.label in template: 135.U) Reactivity: nanU Position: 136 (position.label in template: 136.A) Reactivity: 1A Position: 137 (position.label in template: 137.G) Reactivity: nanG Position: 138 (position.label in template: 138.G) Reactivity: nanG Position: 139 (position.label in template: 139.U) Reactivity: nanU Position: 140 (position.label in template: 140.C) Reactivity: 0C Position: 141 (position.label in template: 141.A) Reactivity: 0A Position: 142 (position.label in template: 142.C) Reactivity: nanC Position: 143 (position.label in template: 143.G) Reactivity: nanG Position: 144 (position.label in template: 144.A) Reactivity: nanA Position: 145 (position.label in template: 145.A) Reactivity: nanA Position: 146 (position.label in template: 146.C) Reactivity: nanC Position: 147 (position.label in template: 147.A) Reactivity: nanA Position: 148 (position.label in template: 148.U) Reactivity: nanU Position: 149 (position.label in template: 149.A) Reactivity: nanA Position: 150 (position.label in template: 150.A) Reactivity: nanA Position: 151 (position.label in template: 151.A) Reactivity: nanA Position: 152 (position.label in template: 152.C) Reactivity: nanC Position: 153 (position.label in template: 153.C) Reactivity: nanC Position: 154 (position.label in template: 154.G) Reactivity: nanG Position: 155 (position.label in template: 155.G) Reactivity: nanG Position: 156 (position.label in template: 156.U) Reactivity: nanU Position: 157 (position.label in template: 157.U) Reactivity: nanU Position: 158 (position.label in template: 158.G) Reactivity: nanG Position: 159 (position.label in template: 159.G) Reactivity: nanG Position: 160 (position.label in template: 160.U) Reactivity: nanU Position: 161 (position.label in template: 161.U) Reactivity: nanU Position: 162 (position.label in template: 162.C) Reactivity: nanC Position: 163 (position.label in template: 163.G) Reactivity: nanG Position: 164 (position.label in template: 164.U) Reactivity: nanU Position: 165 (position.label in template: 165.U) Reactivity: nanU Position: 166 (position.label in template: 166.C) Reactivity: nanC Position: 167 (position.label in template: 167.C) Reactivity: nanC Position: 168 (position.label in template: 168.U) Reactivity: nanU Position: 169 (position.label in template: 169.G) Reactivity: nanG Position: 170 (position.label in template: 170.U) Reactivity: nanU Position: 171 (position.label in template: 171.U) Reactivity: nanU Position: 172 (position.label in template: 172.U) Reactivity: nanU Position: 173 (position.label in template: 173.G) Reactivity: nanG Position: 174 (position.label in template: 174.C) Reactivity: nanC Position: 175 (position.label in template: 175.C) Reactivity: nanC Position: 176 (position.label in template: 176.3')3' 10 20 30 50 100 150


yljB-clpS-clpA



Position: 1851-1985, Conformation: #0







Retained alignments:


   NC_002977.6       C.CG.G.U.G.G..C.G..A...A..G..A....................................U.G.C...U..C..G...A..G..G.G..U..G..A..GC.GU........G.A.G.A...A...A..CUU...UUGCACAUGG..............................................................AGG.A..G.A.A...C...C...U....G.A........GCC...GGC.GG.G...U.GGUU....G.GC.CAACAGGAGGCGAU.UA..C...................................................C.GC.A...G.U...G.G..CCAACG..C.C..-...AU.A.C..GC..CGG....UC.CcG...CG.C.GGG..U..CU...G...G..-..-..-..C...C.G.A.UC....C......C.A...A.--.-.-ccg........................gccg..A.A.U.G...GA....U.CA.UU..CCU.GU.UccU.GG
   NC_003910.7       -.--.C.A.G.U..A.U..C...A..C..-....................................U.U.A...C..U..G...A..A..A.A..-..-..-..--.-A........G.A.U.G...G...A..CUU...AAAAAUCUAG..............................................................ACC.G..A.A.A...C...U...U....G.A........AAC...UUG.UU.G...U.GUUU....G.GU.CAAGAUCAAGCUGU.UG..A.................................................ugA.GC.U...U.U..cG.U..CUG---..U.U..A...UU.C.G..GU..UAU....CU.C.G...AG.C.AGG..G..CU...A...G..G..U..A..G...U.G.A.AG....A......A.A...A.AC.C.A.................................G.U.A.G...GC....U.CU.UU..CUU.AU.U..U.GC
   NC_004603.1       C.CA.G.A.G.A..A.G..U...C..G..G....................................U.G.U...C..U..U...C..A..U.C..U..G..A..CA.AA........G.A.C.A...U...A..UUG...AAGAAUCUUG..............................................................AUG.G..C.A.A...A...A...U....G.A........AGA...UGC.UA.G...U.CUUU....G.GU.CAAGACAACGCUAU.UG..A...................................................U.GC.G...C.U...U.U..CGGAGG..C.U..A...UC.A.A..AC..UGU....CU.C.G...UG.C.UGG..U..UU...G...G..G..U..G..U...A.G.A.UA....A......C.A...A.GC.C.U.................................G.U.G.G...GU....U.CG.UU..CUU.GU.U..U.GC
   NC_005126.1       C.CU.G.A.A.A..A.A..A...C..C..G....................................U.U.U...C..U..G...C..C..A.G..U..G..A..UA.AA........G.A.U.G...U...U..CUA...AGAACAUUGG..............................................................AUG.A..G.C.G...G...C...U....G.A........AAA...UGU.UG.G...U.AUUC....G.GU.CAAGAUAGCGCGAU.UG..C...................................................G.GC.A...U.U...G.A..CCGAAG..C.C..A...UU.A.A..GA..UGA....GU.C.G...UG.C.AGG..G..UU...G...G..G..G..C..A...G.G.A.UA....A......U.A...A.AC.C.G.................................G.U.G.G...GU....U.CU.UU..CCU.AC.U..U.GC
   NC_006512.1       C.CG.G.A.A.C..A.G..U...C..A..G....................................U.U.-...-..U..C...C..C..G.G..UccG..A..CC.AG........G.A.C.U...U...A..CUG...AAGCAGCUGG..............................................................AUC.G..U.A.A...C...C...U....G.A........AAA...UGG.UG.G...U.GUUU....G.GU.CAGGAUGAAGCUAU.UG..A...................................................U.AA.G...C.U...C.A..CUGGUG..C.U..A...UA.C.G..GU..UGU....CG.C.G...UU.C.GGG..U..CU...U...G..C..C..A..A...C.G.A.UA....A......C.C...A.GC.C.A.................................A.U.A.G...GU....U.CG.UU..UAU.UU.U..U.GC
   NC_006513.1       G.CA.G.C.G.U..G.U..-...-..-..-cg.............................aa...C.G.A...C..G.aC...A..A..G.A..C..U..G..CG.CU........G.A.U.-...-...-..---...--GAACCUCG..............................................................AGC.G..C.G.A...C...C...U....G.A........AGA...ACG.UC.G...U.GUUC....G.GC.CAGGAAGCGGCCAU.CG..A...................................................C.GC.A...C.U...G.G..CGAAGG..C.G..A...UC.A.A..GA..UGU....CG.C.G...CU.C.CGG..U..CU...G...-..-..-..G..G...C.A.A.UCc.ggC......G.A...A.AC.C.G.................................A.U.C.G...GC....A.GC.UU..CCU.GU.U..C.UC
   NC_006526.2       C.CA.C.C.G.A..A.A..A...C..G..G....................................U.C.U...C..G..A...A..U..G.A..U..G..A..UA.GC........C.A.-.-...-...-..---...----------gauuuuggcca....................................aucuugaaaccg...---.-..-.-.A...U...U...U....G.A........AGC...GGG.UU.G...U.CUUU....G.GU.CAGGAUAAAGCCAU.CA..A...................................................G.AC.U...U.U...G.G..CUUCGG..C.G..A...UC.A.A..AU..UAA....GC.C.G...UG.C.CGG..U..UU...G...C..G..G..G..A...A.A.U.GC....A......U.A...A.AC.C.G.................................A.U.U.G...GU....A.GC.UA..UCU.GU.U..U.UC
   NC_007406.1       C.CG.C.C.C.A..A.G..A...G..C..A....................................U.G.U...C..G..A...A..G..G.A..C..G..A..UG.CU........G.A.G.G...U...U..CUC...AAGCACCUUG..............................................................AGC.A..G.A.C...U...C...U....C.A........AGC...GCG.UC.G...U.GUUC....G.GA.CAGGAUCGUGCGAU.CG..A...................................................G.GC.U...C.U...U.A..CGGCGU..C.G..A...UC.A.A..GC..UGG....CG.C.G...CG.C.CGG..C..UU...G...C..G.cG..A..A...C.C.G.G-....A......G.A...A.GC.C.G.................................A.U.C.G...GU....U.CC.UA..CCU.GU.U..C.UC
   NC_007498.2       C.CG.G.A.G.-..-.-..-...-..-..-cgcagug...................ucucaac...-.-.-...C..U..C...C..G..A.U..C..G..C..CG.GC........G.-.-.-...-...G..CUG...AAAACCCUGG..............................................................GGC.G..G.-.G...A...U...C....U.U........AAG...CGU.CA.G..gU.GUUC....G.GU.CAGGAUCAGGCGGU.UG..A...................................................C.GC.C...C.U...G.G..CCCGUU..C.G..G...UA.C.U..CC..GGG....CA.C.G...CG.C.CGG..G..UU...G...G..G..G..C..A...U.C.C.CG....A......U.A...A.GC.C.G.................................A.C.C.G...GU....U.CG.UU..UCU.GU.U..U.AC
   NC_007510.1       C.CG.C.C.G.C..A.G..A...G..C..G....................................U.G.U...C..G..C...A..G..G.A..C..G..A..CC.GC........A.G.C.A...A...G..CUG...CAGACGCUCG..............................................................AUC.G..-.C.G..aC...U...U....G.A........AGA...GCG.UC.G...U.GUUC....G.GC.CAGGAUCCGGCGAU.CG..A...................................................C.GC.A...C.U...G.G..CCGCCU..C.G..A...UC.A.A..GA..UGG....CG.C.G...CG.C.GGG..C..CU...C...G..G..C..AagA...U.G.G.A-....-......C.A...A.GC.C.G.................................A.U.C.G...GU....G.CG.UU..CCU.GU.U..C.UC
   NC_007614.1       C.CG.G.C.G.C..A.G..A...A..U..A....................................U.U.U...C..-..C...A..G..U.G..-..-..A..CG.AUc.....gcA.A.C.A...C...G..UUG...AAGACGCUUG..............................................................AUC.G..U.G.A...C...C...U....G.A........AAG...CGG.UU.G...U.GUUC....G.GU.CAGGACAAGGCCAU.CA..A...................................................C.GC.G...C.U...G.A..CAGCCU..C.G..A...UC.A.A..GA..UGG....CG.A.G...AA.G.UGG..U..CU...C...G..G..G..A..A...U.C.C.AC....A......A.A...A.GC.C.G.................................G.U.U.G...GC....U.CU.UU..CCU.UU.U..U.UC
   NC_007626.1       -.--.-.-.-.-..-.-..-...-..-..G....................................U.C.C...A..C..C...A..A..C.G..A..-..-..CG.UG........G.A.G.G...C...G..CUG...CGCAACCUGG..............................................................AAC.G..G.G.A...C...C...U....G.A........AGA...CCC.UG.G...U.GUUC....G.GC.CAGGACAAGGCCAU.CG..A...................................................G.GC.C...C.U...G.G..CCAGCG..C.C..A...UC.A.A..GC..UGG....CC.C.G...CG.C.CGG..G..CU...G...C..GcgA..A..C...C.G.G.A-....-......A.A...A.GC.C.C.................................A.U.C.G...GC....U.GC.UA..CCU.GU.U..C.UC
   NC_007712.1       U.CC.C.C.G.A..G.A..A...A..AcgG....................................U.G.U...C..G..G...C..G..A.G..C..G..A..UC.GC........G.A.U.G...U...G..CUG...AAAAAUCUGG..............................................................GCG.A..C.C.G...U...C...U....G.A........AGA...UGC.UG.G...U.CUUU....G.GU.CAGGAUAAGGCUAU.CG..A...................................................G.GU.A...C.U...G.A..CCGAGG..C.U..A...UC.A.A..AA..UGA....GC.C.G...CG.C.CGG..G..CU...G...G..G..C..C..A...G.G.A.AC....A......U.A...A.GC.C.G.................................G.U.G.G...GA....U.CU.UU..UCU.GU.U..U.GC
   NC_007947.1       C.CG.C.C.G.A..A.G..A...A..U..A....................................U.C.U...C..C..A...G..C..G.A..U..G..A..CC.GC........A.A.U.G...C...A..CUG...AAGACGCUGG.............................................................aGCG.-..U.G.A...C...C...U....C.A........AGG...CCA.CC.G...U.GUUU....G.GU.CAGGAUAAAGCGAU.UG..A...................................................G.GC.A...C.U...C.U..CUGCCG..C.G..A...UC.A.A..GA..UGG....CG.C.G...AA.G.CGG..C..CU...G...G..G..C..A..G...C.C.C.CA....A......U.A...A.AC.C.U.................................A.U.C.G...GC....U.CC.UU..CCU.GU.U..C.UC
   NC_007951.1       C.CC.G.C.C.A..C.A.aA...G..C..G....................................U.G.U...C..G..C...A..A..G.A..C..G..A..UC.GC........A.G.C.A...A...G..CUG...CAAACGCU--gg......................................................auc...GCG.A..U.C.-...-...-...U....G.A........AGA...GCG.UG.G...U.GUUC....G.GG.CAAGACCCGGCCAU.CG..A...................................................C.GC.G...C.U...G.U..CGGCCG..C.G..A...UC.A.A..GA..UGG....CG.C.G...UG.C.GGG..U..CU..cG...G..C..A..A..G...C.U.G.G-....A......C.A...A.GC.C.G.................................A.U.C.G...GC....G.CA.UU..CCU.GU.U..C.UC
   NC_007954.1       -.--.-.-.-.-..-.-..-...-..-..-....................................-.-.-...A..U..C...A..A..G.C..A..G..G..CG.AU........C.A.U.G...C...C..AUC...ACAGCCUUA-g........................................................cc...--G.A..U.G.C...C...A...U....G.A........AAA...CUA.UCuG...G.CCAC....-.--.----AUAAAGCCUUaUU..A...................................................G.GC.C...G.U...U.U..UGGUGG..C.G..A...UG.A.A..U-..UUG....UG.C.U...UA.U.CUG..C..CA...U...G..G..U..C..C...U.G.A.AC....A......U.A...A.AC.U.G.................................G.U.U.AaagAG....C.UU.GC..CGA.AU.U..A.GC
   NC_007964.1       -.--.-.-.-.-..-.-..-...-..-..-....................................-.G.U...C..G..A...A..G..G.A..C..G..A..UG.CC........G.A.G.G...U...C..CUC...AAGCAUCUCG..............................................................AGC.A..GaC.G...C...U...C....-.A........AGC...GCG.UC.G...U.GUUC....G.GA.CAGGAUCUCGCGAU.CG..A...................................................A.GC.C...C.U...G.A..CGGCGG..C.G..A...UC.A.A..GC..UCG....CG.C.G...CG.C.CGG..C..UU...G...C..G..C..G..A...G.C.C.GG....A......A.A...A.GC.C.G.................................A.U.C.G...GC....U.CC.UA..CCU.GU.U..C.UC
   NC_008344.1       C.CA.C.A.G.-..-.-..A...A..U..G....................................U.U.U...C..C..A...A..U..G.A..U..G..A..CC.GC........A.A.U.A...A...A..CUG...AAAACACUGG..............................................................AUC.G..U.G.A...C...C...U....C.A........AGG...CCA.UC.G...U.UUUC....G.GG.CAGGAUGCAGCAAU.UG..A...................................................U.GC.G...C.U...C.A..CUGCUG..C.C..A...UU.A.A..AA..UGG....CA.C.G...CA.G.UGG..A..CU...G...G..G..A..A..A...U.A.C.CG....G......C.A...A.GC.C.U.................................A.U.U.G...GU....U.CC.UU..CCU.GU.U..U.UC
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   NZ_LR699007.1     C.CC.G.G.A.A..A.A..A...A..C..C....................................G.U.U...U..C..C...A..G.cA.G..U..G..A..CA.AA........G.A.U.C...U...G..CUG...CGUAACCUCG..............................................................ACA.G..C.C.G...C...C...U....G.A........AAA...UGC.UG.G...U.CUUC....G.GC.CAGGAUCCGGCGAU.UG..A...................................................U.GC.U...C.U...G.A..CGGAAU..C.C..A...UC.A.A..AA..UGA....GC.C.G...UG.C.GGG..U..CU...G...G..G..G..A..A...C.G.A.GC....A......G.A...A.AC.C.G.................................A.U.U.G...GU....G.CC.UU..CCU.GC.-..U.GG
   NZ_LR699553.1     C.CG.C.C.G.C..A.A..A...G..C..G....................................U.G.U...C..G..C...A..A..G.A..C..G..A..UC.GC........A.G.C.A...A...G..CUG...CAAACGCU--gg......................................................auc...GCG.A..U.C.-...-...-...U....G.A........AGA...GCG.UG.G...U.GUUC....G.GG.CAAGACCCGGCUAU.CG..A...................................................C.GC.G...C.U...G.U..CGGCCG..C.G..A...UC.A.A..GA..UGG....CG.C.G...UG.C.GGG..U..CU..gG...G..C..A..A..G...C.U.G.G-....A......C.A...A.GC.C.G.................................A.U.C.G...GC....G.CA.UU..CCU.GU.U..C.UC
   NZ_LR778301.1     -.--.-.-.-.-..C.A.gC...A..U..G....................................U.G.U...C..C..U...C..C..G.A..U..G..A..CC.GC........U.C.G.G...C...C..CUG...AAAAACCUGG.............................................................aGCG.G..G.-.A...U...C...U....G.C........GCA...AUG.UG.G...U.GUUC....G.GC.CAGGAUGCGGCUAU.UG..C...................................................C.GC.C...C.U...G.G..CCAAGG..C.C..A...UC.A.A..GA..UGU....CC.C.G...UU.C.GGG..A..CU...G...G..G..G..A..A...U.C.C.UC....A......G.A...A.GC.C.C.................................A.U.U.G...GC....U.CC.UU..CCU.GU.U..U.UC
   NZ_LR990739.1     C.CG.G.-.-.-..-.-..-...-..-..-ccaagcagguc...........agcgcgaccga...-.-.-...-..-..C...A..A..G.G..A..C..G..UG.CU........G.C.-.-...-...-..---...-AGCAUCUGG..............................................................AGC.G..C.A.A...C...C...U....G.A........AGA...UGG.UG.A...U.CUUC....G.GG.CAGAAUCCGGCGAU.CG..A...................................................G.AC.G...C.U...G.G..CCGGUU..C.G..A...UC.A.A..GC..UGG....CG.C.G...CU.C.GGG..C..CU...G...-..-..-..-..G...C.C.A.AUccggA......A.A...A.GC.C.G.................................A.U.C.G...GC....A.AC.UU..CCU.GU.U..C.GC
   NZ_LS398110.1     C.CG.C.C.G.A..A.G..A...G..C..G....................................U.G.U...C..G..A...A..G..G.A..U..G..A..UG.CC........G.A.G.G...U...G..CUC...AAGCAUCUCG..............................................................AGC.A..G.A.C...C...C...U....G.A........AGC...GCA.CC.G...U.GUUC....G.GC.CAGGACAAGGCGAU.CG..A...................................................G.UC.G...C.U...C.G..CCGCCU..C.G..A...UC.A.A..GC..UGG....CA.C.G...CG.C.GGG..C..CU...G...C..G..C.gA..G...C.C.G.G-....A......G.A...A.GC.C.G.................................A.U.C.G...GC....U.GC.UA..CCU.GU.U..C.UC
   NZ_LS483250.1     U.UC.C.U.G.A..A.A..A...A..UcaG....................................U.U.U...C..A..U...C..A..A.A..C..G..A..UC.GU........G.A.U.G...U...G..CUU...AAAAACUUAG.............................................................aGCG.-..U.A.A...C...C...U....G.A........AGA...UGG.UU.G...U.GUUU....G.GU.CAAGAUCCAGCGAU.UG..A...................................................A.GU.G...C.U...C.A..CUGAUG..C.G..A...UC.C.G..UU..UAU....CU.C.G...UU.C.UGG..U..CU...U...G..G..U..G..C...U.G.A.GA....C......U.A...A.AC.C.A.................................A.U.U.G...GU....U.CA.UU..CUU.AU.U..U.GC
   NZ_LS483377.1     -.--.-.-.-.-..-.-..U...G..C..C....................................A.C.C...G..A..C...A..A..G.G..A..U..G..UG.CU........G.C.-.-...-...-..---...-AGCACCUGG..............................................................AGC.G..C.A.A...C...C...U....G.A........AGA...UGG.UG.A...U.CUUC....G.GC.CAGGACCCGGCCAU.CG..A...................................................G.AC.G...C.U...G.U..CCUCGG..C.G..A...UC.A.A..GC..UGG....CC.C.G...UU.C.GGG..C..CU...G...G..G..C..A..A...C.C.C.GG....A......A.A...A.GC.C.G.................................A.U.C.G...GC....A.AU.UU..CCU.GU.U..C.GC
   NZ_LS483422.1     C.CU.G.A.A.A..A.A..A...C..A..G....................................U.A.U...C..G..U...C..G..A.G..U..G..A..UA.AA........G.A.C.A...A...G..CUA...AGAACCCUUG..............................................................AUU.C..A.C.G...U...U...U....G.A........AGA...UGC.UA.G...U.CUUC....G.GG.CAAGAUAAUGCCAU.CG..A...................................................A.GC.G...C.U...G.U..CAGAAG..C.G..A...UU.A.A..AA..UGA....AU.C.G...UG.C.UGG..A..CU...A...G..G..A..U..U...G.G.A.AC....A......C.A...A.GC.C.U.................................G.U.C.G...GC....U.CA.UU..UCU.GU.U..U.GC
   NZ_LS483470.1     C.CU.G.A.G.A..A.A..A...-..-..-cggugu.....................cggcaa...-.-.-...-..-..-...-..-..-.-..-..-..-..--.--........-.-.-.-...-...-..---...----------augacaaaacagugcuua......................agacgcuggcagaaagaau...---.-..-.-.-...-...-...-....G.A........GCA...UGA.UG.A...U.CUUC....G.GU.CAGGACAGCGCCAU.UU..C...................................................U.GC.A...C.U...G.A..CAGAAG..-.C..G...AU.C.A..AA..AUG....AG.C.A..gGG.C.UGG..G..CU...U...G..G..U..G..A...C.G.A.GC....G......C.A...A.GC.C.G.................................G.U.G.G...GC....U.CA.UU..CCU.GU.U..U.GC
   NZ_LT615228.1     C.CA.C.C.G.C..A.G..U...C..U..G....................................U.G.A...C..G..G...U..G..G.A..U..G..A..UC.GU........A.G.C.A...A...G..UUA...CAAACCCUUG..............................................................AUC.G..U.G.A...U...A...U....C.A........AGA...GCG.UG.G...U.GUUC....G.GU.CAGGACCCUGCAAU.UG..A...................................................A.GC.U...U.U...G.G..CUAGCG..C.C..A...UC.A.A..GA..UGA....CG.C.G...UG.C.UGG..G..CU...U...G..G..A..A..A...A.A.U.UG....A......U.C...G.CC.C.A.................................A.U.A.G...GU....U.CU.UU..UUU.GU.U..C.UC
   NZ_LT615367.1     -.--.-.-.-.-..-.-..-...-..U..A....................................U.C.A...G..C..C...A..G..-.-..U..G..A..CC.GC........G.A.U.G...U...A..CUG...CGUAGCCUGA..............................................................GCG.A..U.C.G...G...C...U....G.A........AAA...UGC.UG.G...U.AUUU....G.GU.CAGGACAAAGCGAU.UG..A...................................................G.GC.G...C.U...G.A..CUGAGG..C.C..A...UC.A.A..GA..UGA....GU.C.G...UG.C.CGG..G..CU...U...G..G..G..C..A...U.G.A.GC....G......C.A...A.GC.C.G.................................G.U.C.G...GG....U.CA.UU..CCU.GU.U..U.GC
   NZ_LT853882.1     C.CG.G.-.-.-..-.-..-...-..-..-cc............................aag...-.-.-...-..-..C...A..G..G.-..-..-..-..--.--........-.-.-.-...-...-..---...----------ucagcgcgaccgauaaggacgu...............gcugcagcaucuggagcgcaau...---.-..-.-.-...-...C...U....G.A........AGA...UGG.UG.A...U.CUUC....G.GG.CAGAACCCGGCGAU.CG..A...................................................G.AC.G...C.U...G.G..CCGG-G..U.C.gA...UC.A.A..GC..UGG....CG.C.G...UU.C.GGG..C..CU...G...-..-..-..-..G...C.C.A.AUccggA......A.A...A.GC.C.G.................................A.U.C.G...GC....A.AC.UU..CCU.GU.U..C.GC
   NZ_LT899436.1     C.CU.G.U.U.A..C.G..A...A..A..A....................................U.G.U...U..A..C...A..A..U.C..U..G..A..AC.GA........G.A.-.-...-...-..---...-AAAGUUACU..............................................................UCG.U..U.U.A...G...A...A....G.AcgaguuacACA...AGC.GC.G...U.UGUU....G.GA.CAAGAAGAAGCUAU.UG..A...................................................A.GC.A...G.U...U.U..CUGAUG..C.G..G...UA.C.G..AC..GUU....CU.A.G...AG.C.UGG..A..UU...A...C..A..A..A..A...U.C.C.GA....A......U.A...A.AC.C.A.................................A.U.U.G...GU....U.CU.UU..CCU.UU.U..C.UU
   NZ_LT906434.1     C.CC.G.A.A.A..A.A..A...C..C..G....................................U.U.U...C..C..C...A..C..G.A..C..G..A..CA.AA........C.A.A.G...U...C..CUG...CAAUAUCUGG..............................................................CGC.G..U.G.A...U...U...U....G.A........AAA...ACA.UG.G...U.AUUC....G.GC.CAAGACAACGCUAU.UG..A...................................................A.GC.G...C.U...G.G..UGGCCG..C.C..G...UG.A.A..AA..UGG....CG.C.G...CU.C.CGG..C..UU...G...G..G..G..C..A...GcC.C.GA....C......A.A...A.CC.C.A.................................U.C.G.G...CA....G.C-.UU..UCU.GU.U..U.UC
   NZ_LT906435.1     C.CG.G.C.G.C..A.A..A...G..C..G....................................U.G.U...C..G.gC...A..G..A.-..C..G..A..CC.GC........G.G.C.A...A...G..CUU...CAGACGCUC-ga.......................................................uc...GCG.A..-.-.-...U...U...U....G.A........AGA...GCG.UG.G...U.GUUC....G.GG.CAAGACCCGGCCAU.CG..A...................................................U.GC.G...C.U...G.U..CCGCUG..C.G..A...UC.A.A..GA..UGU....CG.C.G...CG.C.CGG..U..CU...G...G.gC..A..A..G..aC.G.G.--....A......C.A...A.GC.C.G.................................A.U.U.G...GC....G.CG.UU..CCU.GU.U..C.UC
   NZ_LT906439.1     U.CU.C.A.G.A..U.G..G...G..C..U....................................C.U.U...C..U..G...A..U..A.U..C..G..A..GC.GU........C.U.U.A...A...-..-AG...GUAUGGCUAG..............................................................UCG.C..U.U.G...G...A...G....G.C........UAA...---.-A.G...U.CAUC....G.GG.CAAGACAAGGCUGU.AG..A...................................................A.GC.C...G.U...U.U..CUAAGG..C.U..A...UU.C.G..UC..GCA....AC.C.G...UG.C.AGG..U..UU...U...G..A..U..G..A...U.G.G.UC....G......U.C...G.CC.C.A.................................A.U.U.G...GC....U.CC.UU..CCU.CU.U..U.GU
   NZ_LT906442.1     C.CA.A.U.C.A..A.G..Aa.gG..U..C....................................U.C.U...G..C..U...A..G..A.G..A..U..A..--.AA........G.A.U.A...C...U..CUG...AGGAAUUUAG..............................................................AGC.G..U.G.A...C...U...U....G.A........AAU...UGC.UU.G...U.GUAU....G.GA.CAAGAUCAGGCUAU.UA..C...................................................U.GC.U...C.U...A.G..CAUCAG..C.G..A...UU.A.A..AU..UAG....GG.C.G...GU.C.AGG..U..UU...A...A..G..A..G..A...G.C.C.AC....A......A.A...A.AC.C.A.................................G.U.U.G...GU....U.GC.UU..CUU.GU.U..U.GC
   NZ_LT906451.1     C.CA.G.U.-.-..-.-..-...-..-..-uaagaagguu.............ucugcuagag...-.-.-...-..A..C...A..A..A.-..-..-..-..--.--........G.A.C.A...C...U..CUG...CGUAACCUUG..............................................................AGC.G..C.G.A...U...U...U....A.A........AAU...UGC.UC.G...U.UUAC....G.GU.CAAGAUGUGGCGAU.UA..C...................................................C.GC.U...U.U...G.G..CCUCUG..C.C..A...UA.A.A..AC..UUG....CU.C.G...UU.C.AGG..U..CU...U...C..G..U..G..A...C.C.C.AC....A......A.A...A.AC.C.U.................................G.U.U.G...GU....U.GU.UU..CUU.AU.U..U.GC
   NZ_LT906479.1     -.--.-.-.-.-..-.-..-...-..U..A....................................U.C.C...G..C..C...A..G..-.-..C..G..A..UC.GC........G.A.C.G...U...G..CUG...AGAAGCCUGG..............................................................GCG.A..C.C.G...G...C...U....G.A........AAA...UGC.UG.G...U.GUUC....G.GG.CAGGAUCAGGCGAU.CG..A...................................................A.GC.C...C.U...G.A..CCGAGG..C.G..A...UC.A.A..GA..UGA....GC.C.G...CG.C.CGG..C..CU...G...G..G..C..C..A...C.G.A.UC....G......C.A...A.GC.C.G.................................G.U.G.G...GA....U.CG.UU..CCU.GU.U..C.GC
   NZ_OU594967.1     C.CA.G.A.A.C..A.G..A...A..A..G....................................U.U.U..cA..U..C...A..A..C.G..G..-..A..UC.GC........G.A.A.A...U...U..CUC...AAAACACUGG..............................................................GUG.A..A.A.C...U...C...U....G.A........AAA...UGA.UG.G...U.GUUU....G.GU.CAAGAUCGUGCGAU.UG..A...................................................U.GU.U...U.U...G.G..UCGAUG..C.G..A...UU.C.G..CC..UCA....AC.C.G...CU.C.AGG..G..UU...A...G..G..U..G..U...U.G.A.AG....G......U.A...A.GC.C.U.................................G.U.C.G...GG....U.CA.UU..CUU.GU.U..C.GC


   Structure         (.((.(.(.(.(..(.(.................................................).).)...)..)..)......(..(.(..(..(..(..((.((.......................................................................................................))).)..).).)...)...)...).........................((.(.....((((....(.((.(((......(((...........................................................).)).....).)...).)..))))))..).)..)...............))).....(.(.(....(.(.(((..............(..(........(...(...(.((..........................................................).).).....))....).)......))).))....).))


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yljB-clpS-clpA



Position: 1851-1985, Conformation: #0







97% 90% 75% 50% Nucleotide present N N N Nucleotide identify E < 0.1 Base-pair covariation E < 0.05 Helix-level covariation 97% 90% 75%

Y U R R Y U R R R R Y U R A A R R U G U U U Y G G C A R G A Y G C A U Y G A G C Y U R C R G C A U Y A A R U G C C G Y C G G Y U R R R R R A A R C C R U G G Y U U C Y U R U U Y C 5'