yidC



Position: 1397-1506, Conformation: #0







DMS reactivity > 1.0 0.0 0.4 0.7 G/U/No data
Position: 0 (position.label in template: 0.5')5' Position: 1 (position.label in template: 1.G) Reactivity: nanG Position: 2 (position.label in template: 2.C) Reactivity: nanC Position: 3 (position.label in template: 3.A) Reactivity: nanA Position: 4 (position.label in template: 4.C) Reactivity: nanC Position: 5 (position.label in template: 5.A) Reactivity: nanA Position: 6 (position.label in template: 6.G) Reactivity: nanG Position: 7 (position.label in template: 7.G) Reactivity: nanG Position: 8 (position.label in template: 8.A) Reactivity: nanA Position: 9 (position.label in template: 9.C) Reactivity: nanC Position: 10 (position.label in template: 10.C) Reactivity: nanC Position: 11 (position.label in template: 11.C) Reactivity: nanC Position: 12 (position.label in template: 12.G) Reactivity: nanG Position: 13 (position.label in template: 13.U) Reactivity: nanU Position: 14 (position.label in template: 14.A) Reactivity: nanA Position: 15 (position.label in template: 15.C) Reactivity: nanC Position: 16 (position.label in template: 16.U) Reactivity: nanU Position: 17 (position.label in template: 17.A) Reactivity: nanA Position: 18 (position.label in template: 18.C) Reactivity: nanC Position: 19 (position.label in template: 19.A) Reactivity: nanA Position: 20 (position.label in template: 20.U) Reactivity: nanU Position: 21 (position.label in template: 21.C) Reactivity: nanC Position: 22 (position.label in template: 22.C) Reactivity: nanC Position: 23 (position.label in template: 23.U) Reactivity: nanU Position: 24 (position.label in template: 24.G) Reactivity: nanG Position: 25 (position.label in template: 25.C) Reactivity: nanC Position: 26 (position.label in template: 26.C) Reactivity: nanC Position: 27 (position.label in template: 27.G) Reactivity: nanG Position: 28 (position.label in template: 28.A) Reactivity: nanA Position: 29 (position.label in template: 29.U) Reactivity: nanU Position: 30 (position.label in template: 30.C) Reactivity: nanC Position: 31 (position.label in template: 31.C) Reactivity: nanC Position: 32 (position.label in template: 32.U) Reactivity: nanU Position: 33 (position.label in template: 33.G) Reactivity: nanG Position: 34 (position.label in template: 34.A) Reactivity: 1A Position: 35 (position.label in template: 35.U) Reactivity: nanU Position: 36 (position.label in template: 36.G) Reactivity: nanG Position: 37 (position.label in template: 37.G) Reactivity: nanG Position: 38 (position.label in template: 38.G) Reactivity: nanG Position: 39 (position.label in template: 39.C) Reactivity: 0C Position: 40 (position.label in template: 40.G) Reactivity: nanG Position: 41 (position.label in template: 41.U) Reactivity: nanU Position: 42 (position.label in template: 42.A) Reactivity: 0.5A Position: 43 (position.label in template: 43.A) Reactivity: 1A Position: 44 (position.label in template: 44.C) Reactivity: 0C Position: 45 (position.label in template: 45.G) Reactivity: nanG Position: 46 (position.label in template: 46.A) Reactivity: 0A Position: 47 (position.label in template: 47.U) Reactivity: nanU Position: 48 (position.label in template: 48.G) Reactivity: nanG Position: 49 (position.label in template: 49.U) Reactivity: nanU Position: 50 (position.label in template: 50.U) Reactivity: nanU Position: 51 (position.label in template: 51.C) Reactivity: 0C Position: 52 (position.label in template: 52.U) Reactivity: nanU Position: 53 (position.label in template: 53.U) Reactivity: nanU Position: 54 (position.label in template: 54.C) Reactivity: 0C Position: 55 (position.label in template: 55.A) Reactivity: 0.5A Position: 56 (position.label in template: 56.U) Reactivity: nanU Position: 57 (position.label in template: 57.U) Reactivity: nanU Position: 58 (position.label in template: 58.C) Reactivity: 1C Position: 59 (position.label in template: 59.A) Reactivity: 0.5A Position: 60 (position.label in template: 60.G) Reactivity: nanG Position: 61 (position.label in template: 61.A) Reactivity: 0A Position: 62 (position.label in template: 62.A) Reactivity: 0A Position: 63 (position.label in template: 63.G) Reactivity: nanG Position: 64 (position.label in template: 64.A) Reactivity: 0A Position: 65 (position.label in template: 65.U) Reactivity: nanU Position: 66 (position.label in template: 66.G) Reactivity: nanG Position: 67 (position.label in template: 67.U) Reactivity: nanU Position: 68 (position.label in template: 68.C) Reactivity: 0C Position: 69 (position.label in template: 69.G) Reactivity: nanG Position: 70 (position.label in template: 70.C) Reactivity: 0.5C Position: 71 (position.label in template: 71.C) Reactivity: 0C Position: 72 (position.label in template: 72.G) Reactivity: nanG Position: 73 (position.label in template: 73.A) Reactivity: 0A Position: 74 (position.label in template: 74.C) Reactivity: 0C Position: 75 (position.label in template: 75.C) Reactivity: 0C Position: 76 (position.label in template: 76.A) Reactivity: 0A Position: 77 (position.label in template: 77.C) Reactivity: 0C Position: 78 (position.label in template: 78.A) Reactivity: 0A Position: 79 (position.label in template: 79.G) Reactivity: nanG Position: 80 (position.label in template: 80.U) Reactivity: nanU Position: 81 (position.label in template: 81.G) Reactivity: nanG Position: 82 (position.label in template: 82.A) Reactivity: 0.5A Position: 83 (position.label in template: 83.C) Reactivity: 0C Position: 84 (position.label in template: 84.C) Reactivity: 0C Position: 85 (position.label in template: 85.G) Reactivity: nanG Position: 86 (position.label in template: 86.A) Reactivity: 0.5A Position: 87 (position.label in template: 87.C) Reactivity: 0C Position: 88 (position.label in template: 88.C) Reactivity: 0C Position: 89 (position.label in template: 89.C) Reactivity: 0C Position: 90 (position.label in template: 90.G) Reactivity: nanG Position: 91 (position.label in template: 91.A) Reactivity: 0.5A Position: 92 (position.label in template: 92.U) Reactivity: nanU Position: 93 (position.label in template: 93.G) Reactivity: nanG Position: 94 (position.label in template: 94.C) Reactivity: 0C Position: 95 (position.label in template: 95.A) Reactivity: 0A Position: 96 (position.label in template: 96.G) Reactivity: nanG Position: 97 (position.label in template: 97.C) Reactivity: 1C Position: 98 (position.label in template: 98.A) Reactivity: 0.5A Position: 99 (position.label in template: 99.G) Reactivity: nanG Position: 100 (position.label in template: 100.A) Reactivity: 0.5A Position: 101 (position.label in template: 101.A) Reactivity: 1A Position: 102 (position.label in template: 102.G) Reactivity: nanG Position: 103 (position.label in template: 103.A) Reactivity: 0.5A Position: 104 (position.label in template: 104.U) Reactivity: nanU Position: 105 (position.label in template: 105.C) Reactivity: 0C Position: 106 (position.label in template: 106.A) Reactivity: 0.5A Position: 107 (position.label in template: 107.U) Reactivity: nanU Position: 108 (position.label in template: 108.G) Reactivity: nanG Position: 109 (position.label in template: 109.A) Reactivity: 0A Position: 110 (position.label in template: 110.C) Reactivity: 0C Position: 111 (position.label in template: 111.C) Reactivity: 0C Position: 112 (position.label in template: 112.U) Reactivity: nanU Position: 113 (position.label in template: 113.U) Reactivity: nanU Position: 114 (position.label in template: 114.U) Reactivity: nanU Position: 115 (position.label in template: 115.A) Reactivity: 1A Position: 116 (position.label in template: 116.U) Reactivity: nanU Position: 117 (position.label in template: 117.G) Reactivity: nanG Position: 118 (position.label in template: 118.C) Reactivity: 0.5C Position: 119 (position.label in template: 119.C) Reactivity: 1C Position: 120 (position.label in template: 120.G) Reactivity: nanG Position: 121 (position.label in template: 121.G) Reactivity: nanG Position: 122 (position.label in template: 122.U) Reactivity: nanU Position: 123 (position.label in template: 123.C) Reactivity: nanC Position: 124 (position.label in template: 124.A) Reactivity: nanA Position: 125 (position.label in template: 125.U) Reactivity: nanU Position: 126 (position.label in template: 126.C) Reactivity: nanC Position: 127 (position.label in template: 127.U) Reactivity: nanU Position: 128 (position.label in template: 128.U) Reactivity: nanU Position: 129 (position.label in template: 129.C) Reactivity: nanC Position: 130 (position.label in template: 130.A) Reactivity: nanA Position: 131 (position.label in template: 131.C) Reactivity: nanC Position: 132 (position.label in template: 132.C) Reactivity: nanC Position: 133 (position.label in template: 133.G) Reactivity: nanG Position: 134 (position.label in template: 134.U) Reactivity: nanU Position: 135 (position.label in template: 135.G) Reactivity: nanG Position: 136 (position.label in template: 136.U) Reactivity: nanU Position: 137 (position.label in template: 137.U) Reactivity: nanU Position: 138 (position.label in template: 138.C) Reactivity: nanC Position: 139 (position.label in template: 139.U) Reactivity: nanU Position: 140 (position.label in template: 140.U) Reactivity: nanU Position: 141 (position.label in template: 141.C) Reactivity: nanC Position: 142 (position.label in template: 142.C) Reactivity: nanC Position: 143 (position.label in template: 143.U) Reactivity: nanU Position: 144 (position.label in template: 144.G) Reactivity: nanG Position: 145 (position.label in template: 145.U) Reactivity: nanU Position: 146 (position.label in template: 146.G) Reactivity: nanG Position: 147 (position.label in template: 147.G) Reactivity: nanG Position: 148 (position.label in template: 148.U) Reactivity: nanU Position: 149 (position.label in template: 149.U) Reactivity: nanU Position: 150 (position.label in template: 150.C) Reactivity: nanC Position: 151 (position.label in template: 151.3')3' 10 20 30 50 100


yidC



Position: 1397-1506, Conformation: #0







Retained alignments:


   NC_002939.5       CCAA...G.G.A..UCCCUAC.UA...C...GU..GACU....CCC...A.UC.AUC...A..UGGG..UG....U....G......A.CA.AUG.G.U.CA..UC...C..A..GCA...........................................G...A.AG.A...UG...A.C.G...C...C..U..U......C..C..C.......-.-..-...A...A..A..U...G...G.AUCCU...GUG.....CAGCAG..AA.GA...UG.A..U.GAUG...GCGCUGC.C............................................GGUGGU.CU.UUAC...G.UUCAU...GU..UCCUCAA
   NC_004347.2       UCCA...A.G.A..UCCUUAC.UA...C...AU..UCUG....CCA...C.UG.CUG...A..UGGG..UG....U....U......U.CU.AUG.U.U.CA..UC...A..U..GCA...........................................G...A.AG.A...UG...C.A.A...C...C..A..A......U..C..G.......C.A..C...C...A..A..CgauG...G.ACCCA...AUG.....CAAGUG..AA.GA...UG.A..U.GCAG...UGGAUGC.C............................................AGUGAU.CU.UUAC...C.GUAUU...CU..UCCUGUG
   NC_004603.1       CGCA...G.G.A..CCCUUAC.UA...C...AU..CCUG....CCA...C.UA.CUG...A..UGGG..UG....C....U......U.CA.AUG.U.U.CC..UA...A..U..CCA...........................................G...A.AG.A...UG...A.G.C...C...C..A..A......C..A..A.......C.C..G...U...A..A..C...G...G.AUCCA...AUG.....CAGCAG..AA.GA...UC.A..U.GACC...UUCAUGC.C............................................GGUUAU.GU.UUAC...C.UUCUU...CU..UCUUGUU
   NC_004917.1       CAAU...A.G.A..CCCCUAU.UU...U...GU..GUUA....CCU...G.UA.UUA...A..UGGG..GG....U....G......A.GU.AUG.U.A.UA..UU...U..C..UCA...........................................A...A.-A.G...CU...U.A.C...A...C..C..U......U..C..A.......A.A..C..uU...U..A..C...A...G.ACCCU...AUG.....CAGGAA..AA.AA...UC.U..U.UAAA...AUGCUUC.C............................................UUGGGU.AU.UUAC...U.AUUUU...C-..UUUAUUA
   NC_005126.1       CACA...A.G.A..UCCUUAU.UA...C...AU..CCUG....CCG...U.UG.CUG...A..UGGG..UG....U....G......A.CA.AUG.U.U.CA..UC...A..U..CCA...........................................G...A.AA.A...UG...U.C.U...C...C..G..A......C..A..A.......C.A..A...U...U..A..C...U...G.AUCCG...AUG.....CAACAG..AA.GA...UU.A..U.GACC...UAUAUGC.C............................................CGUCAU.AU.UUAC...C.AUAUU...CU..UCCUGUG
   NC_006300.1       CGCA...A.G.A..UCCUUAC.UA...C...AU..UUUG....CCA...A.UC.UUA...A..UGGG..CG....C....C......U.CA.AUG.U.U.CU..UA...U..U..GCA...........................................A...A.AA.A...UG...U.C.A...C...C..G..A......C..U..C.......C.G..G...U...U..G..C...U...G.ACCCG...AUG.....CAACAA..AA.GA...UC.A..U.GAAC...UUUAUGC.C............................................GUUGAU.UU.UCAU...G.GUAUU...CU..UCCUGUG
   NC_006512.1       CCAA...A.G.A..CCCAUAC.UA...C...AU..CCUG....CCU...A.UU.UUA...A..UGGG..UG....C....-......-.CA.GUA.U.G.UU..CCu.gA..U..GCA...........................................G...C.GA.C...UG...C.A.G...C...C..G..A......C..A..C.......C.G..A...C...A..G..C...U...G.ACCCA...AUG.....CAACAG..AA.-A...CU.G..U.UUCA..gUAUAUGC.C............................................GGUUAU.CU.UUAC...C.GUAUU...CU..UCCUGUG
   NC_006513.1       CGAA...G.G.A..CCCGUAC.UU...C...AU..CCUG....CCG...G.UG.AUC...A..UGGG..CG....U....G......U.--.CGA.U.-.--..--...-..-..---gcugaucca.........................gaugaagcu-...-.--.-...-C...A.A.C...C...C..G..A......C..-..-.......-.-..-..gC...C..G..C...C...GgAUCCG...AUC.....CAGGCA..AA.AG...UC.A..U.GAUG...GCGAUGC.C............................................GGUGAU.CU.UCAC...U.UUCAU...GU..UCCUGUG
   NC_007292.1       CUCA...G.G.A..UCCUUAU.UA...C...AU..AUUA....CCG...A.UA.UUA...A..UGGG..AA....U....U......A.CU.AUG.U.U.UU..UU...A..U..ACA...........................................A...A.AA.A...UG...U.C.G...C...C..G..A......C..U..A.......C.A..A...U...U..A..C...U...G.AUGCG...AUA.....CAGAAA..AA.AA...UG.A..U.GACU...AUCAUGU.U............................................AAUCAU.UU.UUAC...U.AUAUU...UU..UUUUAUG
   NC_007481.1       CGAA...A.G.A..CCCAUAC.UA...C...GU..GUUA....CCA...A.UC.UUA...U..UUGG..CG....C....C......A.GU.AUG.U.U.UA..UU...A..C..GCA...........................................A...A.AA.U...UA...C.A.G...C...C..U..A......U..G..A.......C.G..G...U...U..A..C...C...G.AUCCA...AUG.....CAGCAA..AA.AA...UG.A..U.GACC...UUUAUGC.C............................................GGUUAU.CU.UCUC...U.GUGUU...CU..UCUUAUG
   NC_007484.1       CCAA...A.G.A..UCCCUAU.UA...C...AU..AUUG....CCC...U.UA.UUA...A..UGGG..UG....U....G......A.GC.AUG.U.U.UG..UU...C..A..GCA...........................................G...A.AG.U...UA...A.G.C...C...C..G..Gc....gC..C..A.......-.-..-...-...-..A..C...C...G.ACCCC...AUA.....CAGGCA..AA.GG...UU.A..U.GGCC...UUGAUGC.C............................................AGUCAU.GU.UUAC...C.GUUUU...UU..UCGUUAU
   NC_007498.2       CCAA...G.G.A..UCCUUAU.UA...C...AU..UACC....CCU...U.UG.AUU...A..UGGG..GG....U....U......A.CU.AUG.U.U.CU..UU...C..A..GCA...........................................A...A.AA.A...UG...A.G.U...C...C..U..A......C..C..A.......-.-..-...C...C..A..U...G...G.AUUCC...CAG.....CAAGCC..AA.AA...UC.A..U.GUUG...UUCAUGC.C............................................GGUUAU.UU.UCAC...C.UUUAU...GU..UCCUUAA
   NC_007517.1       GCAA...G.G.A..UCCUUAU.UA...U...GU..GACU....CCC...A.UC.AUC...A..UGGG..GA....U....C......A.CC.AUG.G.U.CA..UC...C..A..GCA...........................................G...A.AG.A...UG...A.C.G...C..cG..U..C......C..C..A.......-.-..-...-...A..A..U...G...G.ACCCC...AUG.....CAGCAG..AA.GA...UG.A..U.GAUG...GCCCUGC.C............................................GGUGGU.CU.UCAC...C.UUCAU...GU..UCCUGAA
   NC_007712.1       CACA...A.G.A..CCCGUAC.UA...C...AU..CCUG....CCG...C.UC.UUG...A..UGGG..CA....U....U......A.CC.AUG.U.U.CU..UC...A..U..CCA...........................................G...A.AG.A...UG...U.C.G...C...C..C..A......C..C..A.......C.C..G...U...C..A..C...U...G.AUCUG...AUG.....CAGCAG..AA.GA...UC.A..U.GACU...UUUAUGC.C............................................GGUCAU.UU.UCAC...C.GUGUU...CU..UCCUGUG
   NC_007954.1       UUCA...A.G.A..UCCUUAC.UA...C...GU..GCUG....CCA...U.UA.CUU...A..UGGG..UG....U....G......U.CU.AUG.U.G.GU..UA...A..-..---ugcag................................aaaaugC...A.AC.C...GA...U.A.G...Cg.cC..A..A......C..C..A.......-.-..-...-...-..-..U...G...G.AUCCA...AUG.....CAAGUU..AA.GA...UG.A..U.GCAG...UGGAUGC.C............................................UGUUAU.CU.UUAC...G.GUAUU...CU..UCCUCUG
   NC_007963.1       CACA...G.G.A..UCCCUAC.UU...C...AU..CCUG....CCG...A.UC.AUC...A..UGGG..UG....C....C......U.CG.AUG.U.U.C-..--...G..U..GCA...........................................G...C.AG.U...UG...U.U.G...A...A..U..C......C..C..A.......C.G..C...C...G..C..C...G...G.ACCCG...AUG.....CAGGCG..AA.GA...UC.A..U.GAAG...AUGCUGC.C............................................CGUGGU.CU.UCAC...G.UUCUU...CU..UCCUGUG
   NC_008345.1       UUCA...A.G.A..UCCAUAC.UA...U...GU..AUUG....CCA...U.UG.UUA...A..UGGG..CU....U....A......U.CA.AUG.U.U.CU..UG...A..U..GCA...........................................A...A.AA.A...UG...C.A.A...C...C..G..Gua.gcgC..C..A.......-.-..A...C...A..A..U...G...G.AUCCA...AUG.....CAAGUG..AA.AA...UG.A..U.GCAG...UGGAUGC.C............................................AGUUAU.CU.UUAC...C.GUAUU...CU..UCUUAUG
   NC_008576.1       CGAU...G.G.A..CCCCUUC.UA...U...GU..AUUG....CCC...U.UG.UUG...A..UGGG..CG....G....C......U.CU.AUG.U.U.UU..UG...C..A..GA-...........................................G...C.AA.A..cUC...A.A.C...C...C..G..A......C..G..C.......C.A..U...-...-..-..C...G...G.ACCCC...AUG.....CAGGCC..AA.GA...UU.A..U.GAUG...UUUUUGC.C............................................GGUGAU.CU.UUAC...C.GUGAU...GU..UCCUCUC
   NC_008610.1       CUCA...A.G.A..CCCUUAC.UA...U...AU..UUUG....CCA...C.UU.AUU...A..UGGG..UG....U....-......-.--.---.-.-.--..--...-..-..---uucaauguuugcuc...............aacaaaaacuaaau-...-.--.-...--...-.-.-...-...C..C..A......C..C..G.......-.-..C...C...G..C..C...U...G.ACCCA...AUG.....CAGGCA..AA.AA...UU.A..U.GAUG...GCAUUGC.C............................................UUUUGU.AU.UUAC...C.AUUUU...CU..UCCUAUG
   NC_008700.1       UGCA...G.G.A..CCCUUAC.UA...C...GU..ACUG....CCG...C.UG.CUG...A..UGGG..C-....-....-......-.--.---.-.-.--..--...-..-..---gcuuccaugugggcgaug.......caaaagaugcagccaaug-...-.--.-...--...-.-.-...-...-..G..C......C..C..C.......C.A..-...A...C..A..U...G...G.ACCCG...AUG.....CAACAA..AA.AA...UG.C..U.GCAG...UGGAUGC.C............................................GAUGAU.CU.UCAC...C.GUAUU...CU..UCCUGUG
   NC_008709.1       UACA...A.G.A..CCCUUAU.UA...C...AU..UCUG....CCG...A.UC.CUG...A..UGGG..UG....U....G......A.GC.AUG.U.U.CU..UU...A..U..CCA...........................................G...A.AA.A...UG...U.C.U...C...C..A..A......C..A..A.......C.A..G...U...A..C..A...A...G.AUCCA...AUG.....CAGCAG..AA.AG...UA.A..U.GCAG...UUUAUGC.C............................................GGUUAU.UU.UCAC...U.UUCUU...CU..UCCUCUG
   NC_009092.1       UACA...A.G.A..UCCAUAC.UA...U...GU..ACUG....CCG...C.UG.CUG...A..UGGG..UG....U....A......U.CU.AUG.U.U.CC..UG...A..U..GCA...........................................G...A.AG.A...UG...C.A.G...C...C..G..Au...ggC..U..C.......C.G..A...C...C..A..U...G...G.AUCCU...AUG.....CAACAG..AA.GA...UG.A..U.GCAG...UGGAUGC.C............................................AGUUAU.CU.UUAC...C.GUCUU...CU..UCCUCUG
   NC_009792.1       CACA...G.G.A..CCCGUAC.UA...C...AU..CCUG....CCG...A.UC.CUG...A..UGGG..UG....U....G......A.CG.AUG.U.U.CU..UC...A..U..CCA...........................................G...A.AG.A...UG...U.C.U...C...C..G..A......C..C..A.......C.C..G...U...G..A..C...C...G.ACCCG...AUG.....CAGCAG..AA.GA...UC.A..U.GACC...UUUAUGC.C............................................GGUCAU.CU.UCAC...G.GUAUU...CU..UCCUGUG
   NC_009831.1       UACA...A.G.A..UCCAUAC.UA...U...GU..AAUG....CCA...A.UC.CUG...A..UGGG..UA....U....C......U.CG.AUG.U.U.CG..UC...A..U..GCA...........................................G...A.AG.A...UG...C.A.G...C...C..A..A......UggC..A.......C.C..G..aC...G..A..U...G...G.ACCCA...AUG.....CAACAG..AA.GA...UG.A..U.GCAG...UGGAUGC.C............................................GGUAGU.AU.UUAC...C.GUAUU...CU..UCCUAUG
   NC_009901.1       UACA...A.G.A..UCCUUAC.UA...U...GU..UAUG....CCU...A.UC.CUA...A..UGGG..UA....U....C......U.CG.AUG.U.U.UG..UG...A..U..GCA...........................................G...A.AG.A...UG...C.A.G...C...C..A..A......U..G..G.......C.A..C...C...G..A..CuauG...G.AUCCA...AUG.....CAAGUU..AA.AA...UG.A..U.GCAG...UGGAUGC.C............................................UGUAAU.CU.UUAC...C.GUAUU...CU..UCCUAUG
   NC_009937.1       AUCG...U.G.G..CCGUGGU.GA...-...-U..CCUG....CUG...C.UC.CUG...C..UCUC..CG....U....A......A.CG.ACG.C.A.CA..UG...-..-..---cgcauc...............................ggcaugC...A.GG.U...CG...U.C.A...U...C..G..A......G..G..A.......C.U..A...U...G..U..C...C...A.CUCCG...AG-.....GGACUG..AA.G-...--.G..U.GGCG...CUGAUCA.U............................................CGCCA-.--.ACAC...C.UUCUU...CA..CCACGGU
   NC_010334.1       UACA...A.G.A..UCCAUAC.UA...C...GU..ACUA....CCU...A.UC.CUA...A..UGGG..UA....U....C......U.CG.AUG.U.U.CG..UG...A..U..GCA...........................................G...A.AA.A...UG...C.A.G...C...C..A..Au....g-.gC..A.......C.C..G..aC...G..A..U...G...G.ACCCA...AUG.....CAAGUU..AA.GA...UG.A..U.GCAG...UGGAUGC.C............................................AGUAAU.CU.UUAC...C.GUAUU...CU..UCCUAUG
   NC_010506.1       UACA...A.G.A..UCCUUAC.UA...C...GU..GAUG....CCA...A.UC.UUA...A..UGGG..UG....U....C......U.CU.AUG.U.U.UG..UG...A..U..GCA...........................................G...A.AG.A...UG...C.A.G...C...C..U..A......U..G..G.......C.A..C...C...G..A..CaauG...G.AUCCA...AUG.....CAAGUU..AA.GA...UG.A..U.GCAG...UGGAUGC.C............................................AGUGGU.AU.UUAC...C.GUAUU...CU..UCCUAUG
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   NZ_LR134327.1     CGCA...A.G.A..UCCGUAU.UA...C...AU..CCUG....CCG...A.UU.UUA...A..UGGG..CG....C....C......U.CC.AUG.U.U.CU..UG...U..U..ACA...........................................A...A.AA.A...UG...U.C.A...C...C..A..A......C..A..C.......C.G..G...U...U..G..C...U...G.AUCCA...AUG.....CAACAA..AA.GA...UC.A..U.GAAC...UUCAUGC.C............................................GUUAAU.CU.UCAU...G.GUGUU...CU..UCCUUUG
   NZ_LR134343.1     CAAU...G.G.A..UCCAUGG.UU...U...AU..UUUG....CCG...A.UU.UUU...A..UGGG..CG....U....A......A.--.---.-.-.--..--...-..-..---ccauguuugugc..................aacaguuauuaaa-...-.--.-...--...-.-.-...-...-..-..C......C..C..A.......C.A..G..cC...A..A..C...C...G.ACCCG...AUG.....CAGGCG..AA.AA...UG.A..U.GAAA...AUUUUAC.C............................................UGUGAU.UU.UUGC...G.GUAUU...UA..UGCUGUG
   NZ_LR134376.1     UGAA...G.G.A..CCCCUUC.UU...C...GU..GCUG....CCG...A.UC.CUC...A..UGGG..UG....C....C......U.CC.AUG.U.G.GU..AC...C..U..GCA...........................................G...A.AG.A...UG...A.G.C...C...C..G..A......C..C..A.......C.C..A...U...C..A..C...G...G.ACCCC...AUG.....CAGCAG..AA.GG...UG.A..U.GCAG...UUCAUGC.C............................................GAUCAU.CU.UCAC...C.UUCAU...GU..UCCUCUG
   NZ_LR134485.1     CACA...G.G.A..CCCGUAC.UA...C...AU..CCUG....CCG...A.UC.CUG...A..UGGG..CG....U....G......A.CG.AUG.U.U.CU..UC...A..U..UCA...........................................G...A.AG.A...UG...U.C.U...C...C..G..A......C..C..A.......C.C..G...U...G..A..C...C...G.ACCCG...AUG.....CAGCAG..AA.GA...UC.A..U.GACC...UUUAUGC.C............................................GGUCAU.CU.UCAC...C.GUGUU...CU..UCCUGUG
   NZ_LR134494.1     CGCA...A.G.A..CCCGUAC.UA...C...AU..CUUG....CCA...A.UC.CUG...A..UGGG..CG....U....G......A.CG.AUG.U.U.CU..UC...A..U..UCA...........................................G...A.AG.A...UG...U.C.G...C...C..G..A......C..C..A.......C.C..G...U...G..A..C...U...G.AUCCG...AUG.....CAGCAG..AA.AA...UC.A..U.GACC...UUCAUGC.C............................................GGUGAU.CU.UCAC...A.GUGUU...CU..UCCUGUG
   NZ_LR134510.1     CGCC...A.G.A..UCCAUAU.UA...C...AU..CUUA....CCG...A.UC.UUA...A..UGGG..UG....U....A......U.CG.AUG.U.U.CU..UC...U..U..ACA...........................................A...A.AA.A...UG...U.C.G...C...C..A..A......C..C..C.......C.A..A...C...A..A..C...A...G.AUCCG...ACA.....CAACAA..AA.AA...UU.A..U.GACU...UACAUGC.C............................................AGUUGU.GU.UUAC...A.GUAUU...CU..UCCUGUU
   NZ_LR134515.1     CACA...A.G.A..CCCGUAC.UA...C...AU..UCUU....CCG...U.UA.UUA...A..UGGG..UG....C....G......U.CG.AUG.U.U.CU..UG...U..U..ACA...........................................G...A.AA.A...UG...U.C.G...C...C..U..Ag....uC..C..G.......-.-..G...U...A..A..C...C...G.AUCCG...GUA.....CAACAA..AA.AG...UA.A..U.GACC...UUUAUGC.C............................................GGUAAU.GU.UUAC...C.GUAUU...CU..UCUUAUG
   NZ_LR134531.1     CACA...G.G.A..UCCGUAC.UA...C...AU..UCUG....CCG...U.UA.UUG...A..UGGG..CG....G....A......A.CC.AUG.U.U.CC..UG...A..U..CCA...........................................G...A.AG.A...UG...U.C.A...C...C..G..A......C..G..C.......C.G..G...U...G..A..C...A...G.AUCCA...AUG.....CAGCAG..AA.AA...UC.A..U.GACC...UAUAUGC.C............................................GGUUAU.CU.UCAC...C.GUGUU...CU..UCCUGUG
   NZ_LR215729.2     CA-A...G.G.A..UCCGUUC.UU...C...AU..UCUG....CCG...A.UC.AUC...A..UGGG..UG....C....-......-.--.---.-.-.--..--...-..-..---auccauguuuauc.................cagcagcaguuga-...-.--.-...--...-.-.-...-...-..-..A......C..C..C.......G.A..C...Uc.cG..C..C...G...G.ACCCA...AUG.....CAGGCC..AA.GG...UU.A..U.GAAA...AUGAUGC.C............................................AAUCAU.CU.UCAC...C.UUCUU...CU..UCCUGUG
   NZ_LR217713.1     CACA...A.G.A..UCCUUAU.UA...U...AU..ACUU....CCG...A.UU.UUG...A..UGGG..CA....U....G......A.CU.AUG.U.U.UU..GU...A..U..UCA...........................................G...A.AA.A...UG...U.C.A...C...C..G..A......C..U..A.......C.U..G...U...C..A..C...A...G.AUCAG...AUG.....CAGAAA..AA.CA...UU.A..U.UACU...UUUAUGC.C............................................GGCUAU.AU.UUAC...G.CUCUU...UU..UUUUAUA
   NZ_LR699007.1     CACA...G.G.A..UCCGUAC.UA...C...AU..CCUG....CCG...A.UU.CUG...A..UGGG..UG....C....A......A.CG.AUG.U.U.CG..UG...A..U..CCA...........................................G...A.AA.C...UG...U.C.U...C...C..G..A......C..A..G.......C.G..G...U...C..A..C...C...G.ACCCG...UUA.....CAGCAG..AA.GA...UU.U..U.CACC...UUUAUGC.C............................................GGUGAU.CU.UCAC...A.GUCUU...CU..UCCUGUG
   NZ_LR890047.1     CACA...A.G.A..UCCAAAC.UA...U...AU..UUUG....CCA...A.UU.CUG...A..UGGG..UG....U....G......A.CA.AUG.U.U.UU..UU...A..U..UCA...........................................G...A.AG.A...UG...U.C.A...C...C..A..A......C..A..A.......C.A..G...U...U..A..A...U...G.AUCCU...AUG.....CAGCAG..AA.AA...UA.A..U.GAUG...UUUAUGC.C............................................UAUAGU.AU.UUAC...U.UUAUU...CU..UCUUGUG
   NZ_LS483250.1     CACA...A.G.A..CCCGUAC.UA...C...GU..AUUA....CCG...U.UA.UUA...A..UGGG..UG....U....U......A.CU.AUG.U.U.CA..UA...A..U..CCA...........................................G...A.AA.A...UG...U.C.G...C...C..A..A......-..C..A.......C.A..A...G...U..A..C...A...GgAUCCA...AUA.....CAACAA..AA.AG...UC.A..U.GCAG...UUUAUGC.C............................................UGUGAU.GU.UUAC...U.UUCUU...CU..UCUUGUG
   NZ_LS483422.1     CACA...A.G.A..CCCGUAC.UA...C...AU..CCUG....CCA...G.UA.UUA...A..UGGG..UG....U....G......A.CG.AUG.U.U.UG..UU...A..U..UCA...........................................G...A.AG.A...UG...U.C.A...C...C..A..A......C..U..G.......C.C..G...U...U..A..C...U...G.ACCCA...AUG.....CAGCAG..AA.GA...UU.A..U.GACC...UACAUGC.C............................................UGUCGU.GU.UCAC...C.AUCUU...CU..UCCUAUG
   NZ_LS483429.1     CACA...A.G.A..UCCUUAU.UA...C...AU..UCUC....CCU...A.UU.UUA...A..UGGG..UA....U....C......U.CA.AUG.U.U.CU..UG...U..U..GCA...........................................A...A.AA.A...UG...U.C.G...C...C..A..A......C..A..C.......C.G..G...U...A..A..C...U...G.ACCCA...ACA.....CAACAA..AA.AG...UA.A..U.GAAU...UUUAUGC.C............................................AUUAGU.UU.UUAU...G.UUCUU...UU..UCUUGUG
   NZ_LS483443.1     CGCA...A.G.A..UCCGUAU.UA...C...AU..CCUG....CCA...A.UU.UUA...A..UGGG..CG....C....U......U.CC.AUG.U.U.CC..UG...U..U..GCA...........................................A...A.AA.A...UG...U.C.U...C...C..G..A......C..A..C.......C.G..G...U...U..G..C...C...G.AUCCG...AUG.....CAACAA..AA.GA...UC.A..U.GAAC...UUCAUGC.C............................................GUUAAU.CU.UCAU...G.GUGUU...CU..UCCUUUG
   NZ_LS483458.1     CACA...A.G.A..UCCUUAU.UA...U...AU..UUUC....CCU...A.UU.UUA...A..UGGG..UA....U....C......U.CA.AUG.U.U.CU..UG...U..U..GCA...........................................A...A.AA.A...UG...U.C.G...C...C..A..A......C..G..C.......C.A..G...U...G..G..C...U...G.AUCCA...AUG.....CAGCAA..AA.AG...UG.A..U.GAAC...UUUAUGC.C............................................AUUAGU.CU.UUAU...G.UUCUU...CU..UCUUAUG
   NZ_LS483470.1     CACA...G.G.A..CCCGUAC.UA...C...AU..UCUG....CCU...C.UG.CUU...A..UGGG..CG....G....C......A.CA.AUG.U.U.CA..UG...A..U..CCA...........................................G...A.AG.A...UG...U.C.A...C...C..G..A......C..A..C.......C.G..G...U...C..A..C...C...G.AUCCG...AUG.....CAGCAA..AA.GA...UC.A..U.GACC...UAUAUGC.C............................................GGUUAU.CU.UCAC...G.GUCUU...CU..UCCUGUG
   NZ_LS999205.1     CA-A...G.G.A..UCCGUUC.UU...C...AU..CCUG....CCG...A.UC.AUC...A..UGGG..CG....C....C......A.CC.---.A.U.GU..UC...A..U..CCA...........................................G..cA.GC.A...--...-.-.G...C...U..G.aA......C..C..C.......G.A..C...-...G..CcuC...C...GgAUCCG...AUG.....CAGGCC..AA.GG...UG.A..U.GAAA...AUGAUGC.C............................................GAUCAU.CU.UCAC...C.UUCUU...CU..UCCUGUG
   NZ_LT594522.1     CUCC...A.G.A..UCCUUAC.UA...U...AU..UUUG....CCG...A.CA.CUG...A..UGGG..UG....U....G......A.CU.AUG.U.U.CU..UU...A..U..UCA...........................................U...A.AA.A...UG...-.-.-...U...C..G..A......U..C..A.......-.-..-...A...U..A..C...U...G.AUCCA...AUA.....CAACAU..AA.AA...UU.A..U.GUUU...UUUAUGC.C............................................AGUUAU.AU.UUAC...U.AUUUU...UU..UCUAUUA
   NZ_LT615367.1     CGCA...A.G.A..CCCGUAC.UA...C...GU..GCUG....CCU...A.UC.CUG...A..UGGG..CA....U....G......A.CG.AUG.U.U.CU..UC...A..U..UCA...........................................G...A.AG.A...UG...U.C.G...C...C..G..A......C..C..A.......C.C..G...U...C..A..C...C...G.ACCCG...AUG.....CAACAG..AA.GA...UA.A..U.GACC...UACAUGC.C............................................GGUUAU.CU.UCAC...G.GUGUU...CU..UCCUGUG
   NZ_LT828648.1     UGCA...G.G.A..UCCGUAC.UA...C...GU..GCUG....CCG...A.UC.AUC...A..UGGG..CG....C....G......A.CG.AUG.G.U.GC..UU...C..A..GC-ag.......................................aaA...A.UC.A...CC...C.C.G...A...C..G..A......C..C..A.......-.-..U...G...G..A..U...C...-.---CG...ACG.....CAAGCG..AA.GA...UC.A..U.GCUC...AUGCUCC.C............................................G-GCAU.--.UU--...-.AUGAC...CU..UCUUGUU
   NZ_LT855380.1     CA-A...G.G.A..CCCGUUC.UU...C...AU..UUUG....CCG...A.UC.AUC...A..UGGG..CG....C....G......A.CC.AUG.U.-.--..UC...A..U..UCA...........................................G...C.A-.G...CG...U.-.-...C...U..G..A.....aC..C..C.......G.A..C...U..cC..U..C...C...GgAUCCG...AUG.....CAGGCC..AA.GG...UC.A..U.GAAA...AUGAUGC.C............................................AAUCAU.CU.UCAC...G.UUCUU...CU..UCCUGUG
   NZ_LT897836.1     CUCA...G.G.A..UCCAUAC.UA...U...AU..CCUA....CCG...G.UA.CUU...A..UGGG..UA....U....U......A.CC.AUG.U.U.CU..UU...A..U..UCA...........................................G...A.AG.A...UA...U.C.G...C...C..G..A......C..U..A.......C.C..G...U...U..A..C...U...G.AUCCU...AUG.....CAACAG..AA.GA...UC.A..U.GGUU...UUUAUGC.C............................................AGUAAU.CU.UCAC...U.AUGUU...CU..UCCUGUG
   NZ_LT906435.1     CGCA...G.G.A..UCCGUAU.UA...C...AU..CCUG....CCG...G.UG.CUG...A..UGGC..CG....U....G......U.CG.AUG.U.U.--..-C...A..U..UCA...........................................G...-.--.A...CG...A.A.G...C...U..G..Aa....cC..C..G.......A.C..G...C...C..G..C...C...GgAUCCG...AUG.....CAAGCC..AA.GA...UG.A..U.GAUG...UUCAUGC.C............................................GCUGAU.UU.UCUCgguC.AUGUUccuCU..UCCUGCC
   NZ_LT906448.1     CACA...A.G.A..UCCAUAU.UA...C...AU..CCUA....CCA...A.UU.UUA...A..UGGG..UG....C....U......U.CU.AUG.U.U.CU..UG...U..U..ACA...........................................A...A.AA.A...UG...U.C.A...C...C..A..A......C..G..C.......C.U..G...U...A..G..C...C...G.ACCCA...AUG.....CAACAA..AA.GA...UU.A..U.GAAC...UUUAUGC.C............................................AUUAAU.CU.UUAU...G.GUGUU...CU..UCUUGUG
   NZ_LT906463.1     CACA...A.G.A..UCCGUAC.UA...C...AU..UUUG....CCA...A.UC.UUG...A..UGGG..CG....G....C......U.CA.AUG.U.U.CU..UG...U..U..GCA...........................................A...A.AA.A...UG...U.C.A...C...C..G..A......C..U..C.......C.G..G...U...A..G..C...G...G.AUCCA...AUG.....CAGCAA..AA.AG...UA.A..U.GAAC...UUUAUGC.C............................................GUUGAU.CU.UCAU...G.UUCUU...CU..UCCUCUG
   NZ_LT906479.1     CGCA...G.G.A..CCCGUAC.UA...C...AU..CCUG....CCA...A.UC.CUG...A..UGGG..CG....U....G......A.CG.AUG.U.U.CU..UC...A..U..CCA...........................................G...A.AG.A...UG...U.C.G...C...C..G..A......C..C..A.......C.C..G...U...G..A..C...U...G.ACCCG...AUG.....CAGCAG..AA.AA...UC.A..U.GACC...UUCAUGC.C............................................GGUGAU.CU.UCAC...C.GUGUU...CU..UCCUGUG
   NZ_OU594967.1     CUCA...A.G.A..CCCAUAC.UA...C...AU..CCUG....CCA...G.UC.UUG...A..UGGG..GA....U....U......A.GU.AUG.U.U.CA..UG...A..U..CCA...........................................G...A.AA.A...UG...U.C.G...C...C..A..A......C..G..G.......C.G..G...U...U..G..C...U...G.ACCCG...AUG.....CAGCAG..AA.AA...UU.A..U.GCAG...UUUAUGC.C..........................................agUGGCAU.--.UUAC...C.GUAUU...CU..UCCUGUU
   NZ_OU907312.1     CCCC...U.G.A..UCCCUAU.UA...U...GU..CUUG....CCG...C.UA.UUG...A..UGGG..GC....U....C......A.GU.AUG.U.U.UC..UG...A..U..CCA...........................................A...A.AA.A...UG...U.C.C...C...-..C..U......U..C..A......cC.G..G...U...G..A..C...C...G.AUCCC...AUG.....CAGCAA..AA.GG...UC.A..U.GACG...UUUAUGC.C............................................AGCGAU.CU.UUAC...G.GUGUU...CU..UCCUCUG


   Structure         ((((...(.(.(......(((......(...((..(........((.....((.(((......(((...((..................((.(((...(.((..((.......................................................)...).)).)...))...).).).......)..).........)..)..).......).)..).......)..)......)...).....)...)))................((......(..(.((((........................................................))))))....)).......))).........)))))))


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yidC



Position: 1397-1506, Conformation: #0







97% 90% 75% 50% Nucleotide present N N N Nucleotide identify E < 0.1 Base-pair covariation E < 0.05 Helix-level covariation 97% 90% 75%

Y R R G A Y C C U A Y U Y R U Y U R C C R U U A U G G G Y R Y Y A U G U Y C A R Y R Y C R C R Y R Y G A Y C C R A U G C A R R A A R R U A U G R Y U G C C U R U U U Y A C U U U Y U U C Y U U 5'