yidC



Position: 1041-1175, Conformation: #0







DMS reactivity > 1.0 0.0 0.4 0.7 G/U/No data
Position: 0 (position.label in template: 0.5')5' Position: 1 (position.label in template: 1.U) Reactivity: nanU Position: 2 (position.label in template: 2.C) Reactivity: nanC Position: 3 (position.label in template: 3.A) Reactivity: nanA Position: 4 (position.label in template: 4.A) Reactivity: nanA Position: 5 (position.label in template: 5.A) Reactivity: nanA Position: 6 (position.label in template: 6.C) Reactivity: nanC Position: 7 (position.label in template: 7.U) Reactivity: nanU Position: 8 (position.label in template: 8.G) Reactivity: nanG Position: 9 (position.label in template: 9.C) Reactivity: nanC Position: 10 (position.label in template: 10.U) Reactivity: nanU Position: 11 (position.label in template: 11.G) Reactivity: nanG Position: 12 (position.label in template: 12.A) Reactivity: nanA Position: 13 (position.label in template: 13.A) Reactivity: nanA Position: 14 (position.label in template: 14.A) Reactivity: nanA Position: 15 (position.label in template: 15.U) Reactivity: nanU Position: 16 (position.label in template: 16.G) Reactivity: nanG Position: 17 (position.label in template: 17.G) Reactivity: nanG Position: 18 (position.label in template: 18.A) Reactivity: nanA Position: 19 (position.label in template: 19.U) Reactivity: nanU Position: 20 (position.label in template: 20.C) Reactivity: nanC Position: 21 (position.label in template: 21.C) Reactivity: nanC Position: 22 (position.label in template: 22.A) Reactivity: nanA Position: 23 (position.label in template: 23.U) Reactivity: nanU Position: 24 (position.label in template: 24.A) Reactivity: nanA Position: 25 (position.label in template: 25.G) Reactivity: nanG Position: 26 (position.label in template: 26.C) Reactivity: nanC Position: 27 (position.label in template: 27.U) Reactivity: nanU Position: 28 (position.label in template: 28.U) Reactivity: nanU Position: 29 (position.label in template: 29.U) Reactivity: nanU Position: 30 (position.label in template: 30.G) Reactivity: nanG Position: 31 (position.label in template: 31.U) Reactivity: nanU Position: 32 (position.label in template: 32.G) Reactivity: nanG Position: 33 (position.label in template: 33.G) Reactivity: nanG Position: 34 (position.label in template: 34.G) Reactivity: nanG Position: 35 (position.label in template: 35.U) Reactivity: nanU Position: 36 (position.label in template: 36.A) Reactivity: 1A Position: 37 (position.label in template: 37.A) Reactivity: 0A Position: 38 (position.label in template: 38.C) Reactivity: 1C Position: 39 (position.label in template: 39.U) Reactivity: nanU Position: 40 (position.label in template: 40.G) Reactivity: nanG Position: 41 (position.label in template: 41.G) Reactivity: nanG Position: 42 (position.label in template: 42.G) Reactivity: nanG Position: 43 (position.label in template: 43.G) Reactivity: nanG Position: 44 (position.label in template: 44.C) Reactivity: 1C Position: 45 (position.label in template: 45.U) Reactivity: nanU Position: 46 (position.label in template: 46.U) Reactivity: nanU Position: 47 (position.label in template: 47.C) Reactivity: 0C Position: 48 (position.label in template: 48.U) Reactivity: nanU Position: 49 (position.label in template: 49.C) Reactivity: 0.5C Position: 50 (position.label in template: 50.C) Reactivity: 0C Position: 51 (position.label in template: 51.A) Reactivity: 0A Position: 52 (position.label in template: 52.U) Reactivity: nanU Position: 53 (position.label in template: 53.U) Reactivity: nanU Position: 54 (position.label in template: 54.A) Reactivity: 1A Position: 55 (position.label in template: 55.U) Reactivity: nanU Position: 56 (position.label in template: 56.C) Reactivity: 0.5C Position: 57 (position.label in template: 57.A) Reactivity: 1A Position: 58 (position.label in template: 58.U) Reactivity: nanU Position: 59 (position.label in template: 59.C) Reactivity: 0.5C Position: 60 (position.label in template: 60.A) Reactivity: 0.5A Position: 61 (position.label in template: 61.U) Reactivity: nanU Position: 62 (position.label in template: 62.C) Reactivity: 0C Position: 63 (position.label in template: 63.A) Reactivity: 0.5A Position: 64 (position.label in template: 64.C) Reactivity: 0C Position: 65 (position.label in template: 65.C) Reactivity: 0C Position: 66 (position.label in template: 66.U) Reactivity: nanU Position: 67 (position.label in template: 67.U) Reactivity: nanU Position: 68 (position.label in template: 68.U) Reactivity: nanU Position: 69 (position.label in template: 69.A) Reactivity: 0.5A Position: 70 (position.label in template: 70.U) Reactivity: nanU Position: 71 (position.label in template: 71.C) Reactivity: 0C Position: 72 (position.label in template: 72.G) Reactivity: nanG Position: 73 (position.label in template: 73.U) Reactivity: nanU Position: 74 (position.label in template: 74.U) Reactivity: nanU Position: 75 (position.label in template: 75.C) Reactivity: 0.5C Position: 76 (position.label in template: 76.G) Reactivity: nanG Position: 77 (position.label in template: 77.U) Reactivity: nanU Position: 78 (position.label in template: 78.G) Reactivity: nanG Position: 79 (position.label in template: 79.G) Reactivity: nanG Position: 80 (position.label in template: 80.C) Reactivity: 1C Position: 81 (position.label in template: 81.A) Reactivity: 0.5A Position: 82 (position.label in template: 82.U) Reactivity: nanU Position: 83 (position.label in template: 83.C) Reactivity: 1C Position: 84 (position.label in template: 84.A) Reactivity: 0.5A Position: 85 (position.label in template: 85.U) Reactivity: nanU Position: 86 (position.label in template: 86.G) Reactivity: nanG Position: 87 (position.label in template: 87.U) Reactivity: nanU Position: 88 (position.label in template: 88.A) Reactivity: 0A Position: 89 (position.label in template: 89.C) Reactivity: 0C Position: 90 (position.label in template: 90.C) Reactivity: 0C Position: 91 (position.label in template: 91.C) Reactivity: 0C Position: 92 (position.label in template: 92.G) Reactivity: nanG Position: 93 (position.label in template: 93.C) Reactivity: 0.5C Position: 94 (position.label in template: 94.U) Reactivity: nanU Position: 95 (position.label in template: 95.G) Reactivity: nanG Position: 96 (position.label in template: 96.A) Reactivity: 0.5A Position: 97 (position.label in template: 97.C) Reactivity: 1C Position: 98 (position.label in template: 98.C) Reactivity: 1C Position: 99 (position.label in template: 99.A) Reactivity: 0A Position: 100 (position.label in template: 100.A) Reactivity: 0A Position: 101 (position.label in template: 101.A) Reactivity: 0.5A Position: 102 (position.label in template: 102.G) Reactivity: nanG Position: 103 (position.label in template: 103.C) Reactivity: 0C Position: 104 (position.label in template: 104.G) Reactivity: nanG Position: 105 (position.label in template: 105.C) Reactivity: 1C Position: 106 (position.label in template: 106.A) Reactivity: 0A Position: 107 (position.label in template: 107.G) Reactivity: nanG Position: 108 (position.label in template: 108.U) Reactivity: nanU Position: 109 (position.label in template: 109.A) Reactivity: 0.5A Position: 110 (position.label in template: 110.C) Reactivity: 0C Position: 111 (position.label in template: 111.A) Reactivity: 0.5A Position: 112 (position.label in template: 112.C) Reactivity: 1C Position: 113 (position.label in template: 113.C) Reactivity: 0C Position: 114 (position.label in template: 114.U) Reactivity: nanU Position: 115 (position.label in template: 115.C) Reactivity: 0C Position: 116 (position.label in template: 116.C) Reactivity: 0C Position: 117 (position.label in template: 117.A) Reactivity: 0.5A Position: 118 (position.label in template: 118.U) Reactivity: nanU Position: 119 (position.label in template: 119.G) Reactivity: nanG Position: 120 (position.label in template: 120.G) Reactivity: nanG Position: 121 (position.label in template: 121.C) Reactivity: 0C Position: 122 (position.label in template: 122.G) Reactivity: nanG Position: 123 (position.label in template: 123.A) Reactivity: 1A Position: 124 (position.label in template: 124.A) Reactivity: 1A Position: 125 (position.label in template: 125.G) Reactivity: nanG Position: 126 (position.label in template: 126.A) Reactivity: 0A Position: 127 (position.label in template: 127.U) Reactivity: nanU Position: 128 (position.label in template: 128.G) Reactivity: nanG Position: 129 (position.label in template: 129.C) Reactivity: 1C Position: 130 (position.label in template: 130.G) Reactivity: nanG Position: 131 (position.label in template: 131.U) Reactivity: nanU Position: 132 (position.label in template: 132.A) Reactivity: 0A Position: 133 (position.label in template: 133.U) Reactivity: nanU Position: 134 (position.label in template: 134.G) Reactivity: nanG Position: 135 (position.label in template: 135.U) Reactivity: nanU Position: 136 (position.label in template: 136.U) Reactivity: nanU Position: 137 (position.label in template: 137.G) Reactivity: nanG Position: 138 (position.label in template: 138.C) Reactivity: 0C Position: 139 (position.label in template: 139.A) Reactivity: 1A Position: 140 (position.label in template: 140.G) Reactivity: nanG Position: 141 (position.label in template: 141.C) Reactivity: 0C Position: 142 (position.label in template: 142.C) Reactivity: nanC Position: 143 (position.label in template: 143.G) Reactivity: nanG Position: 144 (position.label in template: 144.A) Reactivity: nanA Position: 145 (position.label in template: 145.A) Reactivity: nanA Position: 146 (position.label in template: 146.G) Reactivity: nanG Position: 147 (position.label in template: 147.A) Reactivity: nanA Position: 148 (position.label in template: 148.U) Reactivity: nanU Position: 149 (position.label in template: 149.U) Reactivity: nanU Position: 150 (position.label in template: 150.C) Reactivity: nanC Position: 151 (position.label in template: 151.A) Reactivity: nanA Position: 152 (position.label in template: 152.G) Reactivity: nanG Position: 153 (position.label in template: 153.G) Reactivity: nanG Position: 154 (position.label in template: 154.C) Reactivity: nanC Position: 155 (position.label in template: 155.A) Reactivity: nanA Position: 156 (position.label in template: 156.A) Reactivity: nanA Position: 157 (position.label in template: 157.U) Reactivity: nanU Position: 158 (position.label in template: 158.G) Reactivity: nanG Position: 159 (position.label in template: 159.C) Reactivity: nanC Position: 160 (position.label in template: 160.G) Reactivity: nanG Position: 161 (position.label in template: 161.U) Reactivity: nanU Position: 162 (position.label in template: 162.G) Reactivity: nanG Position: 163 (position.label in template: 163.A) Reactivity: nanA Position: 164 (position.label in template: 164.G) Reactivity: nanG Position: 165 (position.label in template: 165.C) Reactivity: nanC Position: 166 (position.label in template: 166.G) Reactivity: nanG Position: 167 (position.label in template: 167.U) Reactivity: nanU Position: 168 (position.label in template: 168.C) Reactivity: nanC Position: 169 (position.label in template: 169.U) Reactivity: nanU Position: 170 (position.label in template: 170.G) Reactivity: nanG Position: 171 (position.label in template: 171.G) Reactivity: nanG Position: 172 (position.label in template: 172.G) Reactivity: nanG Position: 173 (position.label in template: 173.C) Reactivity: nanC Position: 174 (position.label in template: 174.G) Reactivity: nanG Position: 175 (position.label in template: 175.A) Reactivity: nanA Position: 176 (position.label in template: 176.3')3' 10 20 30 50 100 150


yidC



Position: 1041-1175, Conformation: #0







Retained alignments:


   NC_002939.5       GU.C..U..CAAG.UU..UUUCCACA...AC...UA....................................................CACCG...GGAA.C..U...ACGG.GAUAGCCAUUAUCA...UCAU...CA...C...GGU...UA..UCAU........A..AA..GG.U.U...A.UC...UUC.UAC.CCGC.U.AA.C...CCA...............................................................CUC-..CA........G.cUACA.AG...U....CCAUG....AA.GG.A.GA.UGC.AGAA.G.C.UC.........CAGCCGAAGAUG..CA................................................G..CA...GU...U.....G.C...---.-......G.C.GAA...A...A...GUA.C
   NC_002967.9       UG.A..U..GGAA.AU..UUUUUAUA...AA...AU....................................................UAUUC...CUAA.C..U...GGGG.UGUAGCCCUUCUAU...UACU...UA...C...UCU...UU..UAAU........G..CG..UA.U.A...A.UC...UUU.UUC.CCGC.U.UA.C...CAA..........................................aa.................aaAGCU..CG........G..AAGC.CA...C....-AAAG....CG.UA.-.--.UGC.AGGA.G.C.UU.........CAGCCUCAGAUU..AA................................................U..GA...GC...U.....G.-...--C.A......G.C.AAA...A...G...UAC.A
   NC_002977.6       UG.C..U..GGAA.AC..AUUCCACG...GC...UU....................................................UUUCA...ACAA.C..U...GGGG.CUGGGCCAUCAUUU...UCGU...GA...C...CCU...GG..UCAU........-..CA..AG.G.C..gC.UG...UUC.UUC.AAGC.U.CU.C...CGA...............................................................AGC-..CA........G.cUACC.GU...U....CCAUG....GC.CA.A.CA.UGC.GGAA.G.C.UG.........CAACCCAAGCUG..GU................................................G..GA...AU...U.....G.A...AGG.A......G.C.GCU...A...U...GGC.G
   NC_003910.7       UA.C..U..ACUA.AC..GAUCCAAA...GU...UU....................................................UGUUA...CUAA.C..U...GGGG.UGUAGCUAUUAUUA...UCAU...CA...C...CUU...AA..UCGU........U..AA..AG.G.U...G.GU...AUG.UAC.CCAU.U.AA.C...UAA...............................................................AGCG..CA........A..UAUA.CC...U....CAAUG....GC.UA.A.AA.UGC.GUGA.U.U.UA.........GCACCAAAAAUG..GC................................................A..CA...AC...U.....A.A...AAG.A......G.C.GUU...U...U...GGU.G
   NC_003911.12      UG.C..U..GCAC.CA..GAUCAACG...GG...CU....................................................GAUCG...GCAA.C..A...UGGG.CUGGUCGAUCAUCG...GCCU...GA...C...CCU...GA..UCAU........-..CA..AG.G.C..gA.UC...GUC.UUC.CCGC.U.--.-...---...............................................................GGCG..CUgaa..aucC..UAUG.UC...U....CGAUG....GC.CA.A.GA.UGA.AGGA.G.C.UU.........CAGCCGCAGAUG..GA................................................G..GC...CC...U.....G.A...AAG.Ag....gC.C.GCC...-...-...GGC.G
   NC_004347.2       UA.U..U..GAUG.UU..CUAUCAAU...CA...UU....................................................UGUAG...GUAA.C..U...GGGG.UGUGGCAAUUAUCC...UGAU...CA...C...CUU...AA..CCGU........U..CG..UG.G.U...U.UA...CUG.UUC.CCGC.U.CA.C...CAA...............................................................AGCG..CA........G..UACA.CC...U....CAAUG....GC.GA.A.GA.UGC.GUAA.C.C.UA.........CAGCCAAAACUG..CA................................................G..GA...UU...U.....G.A...AAG.A......A.C.GCU...U...C...GGU.G
   NC_004578.1       UG.C..U..GCAA.CA..CAUCCACG...CG...AU....................................................UCUGG...GCAA.C..U...GGGG.CUGGUCGAUCAUCG...UCCU...GA...C...CAU...GU..UGAU........C..AA..AG.G.C...C.UG...UUC.UUC.CCGC.U.GU.C...CGC...............................................................AGC-..CA........G.cUACA.AG...U....CGAUG....GC.AC.G.CA.UGC.GCGC.C.G.UG.........GCUCCAAAGCUU..GC................................................A..GU...GC...U.....G.A...AGG.A......A.C.AAC...A...U...GGC.G
   NC_004603.1       UG.C..U..UGCU.UU..CAUCCAAA...GC...UU....................................................CGUCG...GUAA.C..U...GGGG.UGUGGCAAUCAUCU...GUUU...GA...C...CUU...CA..UCGU........U..CG..UG.G.U...G.CA...AUG.UAC.CCAC.U.AA.C...GAA...............................................................AGCG..CA........A..UACA.CG...U....CUAUG....GC.GA.A.AA.UGC.GCAU.G.C.UA.........CAGCCUAAGCUG..CA................................................A..GC...UA...U.....G.C...GUG.A......G.C.GUA...U...U...GGC.G
   NC_004757.1       UG.C..U..AUCG.UU..CUAUCAUU...CA...UG....................................................GACGG...ACAA.U..U...GGGG.GGUGGCAAUCAUCC...UGUU...GA...C...AAU...GA..CCGU........C..AA..AC.U.U...C.UG...UUC.UUC.CCGC.U.AU.C...UGC...............................................................AGCC..GG........C..UAUC.GA...U....CCAUG....GC.CA.A.GU.UGC.GCCU.G.G.UA.........ACACCCAAACUG..AA................................................G..CG...UA...U.....U.C...AGG.A......U.C.AAUauaA...A...GGU.G
   NC_004917.1       UU.C..U..UGAA.UA..UUUAUAUG...AU...U-....................................................UGUGC..gGAAA.U..U...GGGG.UUGGGCGAUUGUAU...UAUU...AA...C...GCU...AA..UUGU........U..CG..CA.U.A...G.UG...CUU.UAU.CCUU.U.GA.C...UUA...............................................................UAAG..G-........G..UAUG.GU...A....UCAAU....GC.AA.A.AA.CUC.AAAG.A.UuUA.........GCACCUAAAAUG..AA................................................A..GA...UU...U.....A.C...AAA.C......G.C.GUU...A...U...AAA.G
   NC_005126.1       UG.U..U..GAAG.UU..CCUGCAUG...GU...UU....................................................UAUUG...GUAA.C..U...GGGG.CUUCUCCAUCAUUG...UUAU...CA...C...CUU...UA..UUGU........G..CG..UG.G.U...A.UC...AUG.UAC.CCGC.U.GA.C...CAA...............................................................AGCA..CA........A..UACA.CG...U....CAAUG....GC.GA.A.AA.UGC.GUCU.G.U.UA.........CAGCCUAAAUUG..GC................................................G..GC...UA...U.....G.C...GCG.A......G.C.GUA...U...U...GGU.G
   NC_005966.1       GC.U..U..GCAA.UU..UUUCCAUA...AC...AU....................................................UGUUG...GAAA.C..U...GGGG.CUGGUCAAUUAUCU...UGUU...GA...C...GGU...AU..UGGU........G..AA..GC.U.G...A.UC...UUG.UGG.CCGC.U.GU.C...UUC...............................................................AAAG..AG........C..UAUC.GC...U....CAAUG....GC.CA.A.GA.UGC.GUGU.GaU.UG.........CACCUG-AAAUG..CA................................................A..CG...CA...U.....GaA...AGA.A......G.A.GUU...U...G...GCG.A
   NC_006138.1       UG.C..U..CAAC.UU..CUUUCAUA...GC...UU....................................................UACCC...AUAA.C..U...ACGG.UAUCGCAAUUAUCC...UUGU...AA...C...CAU...CA..UGUU........C..AA..GG.G.C...A.UU...UUC.UGG.CCAA.U.UA.C...CCA...............................................................AAAG..GG........U..AUGA.AG...U....CCAUG....AA.AA.A.CA.UGC.AAAA.A.U.UG.........CAACCUAAGAUG..GC................................................U..GC...UC...U.....U.A...AGG.Ag...aaG.C.AUA...A...G...GAC.G
   NC_006156.1       GG.UaaU..GCAA.GU..UUUUUAUG...AC...GU....................................................UAUAC...CUAA.U..U...GGGG.GCUUUCAAUUAUUU...UUUU...GA...C...AAU...UG..UUGU........U..AG..AA.U.A...C.UU...AUC.UUU.CCUU.U.GA.C...AUU...............................................................UAAG..GGa......uU..UAGA.GC...U....--ACU....GC.UG.A.GC.UUU.CCAA.A.C.UU.........CAACCUAAAAUG..AA................................................A..GA...AC...U.....U.C...AAG.U......A.A.AGU...U...U...AAG.C
   NC_006300.1       UA.U..U..AAAC.GU..GAUUCAAA...GC...AU....................................................UGUAA...GCAA.C..U...GGGG.UCUGGCUAUUAUCG...GCGU...AA...C...CAU...UG..UGGU........A..AA..AG.G.U...A.UU...CUU.UAU.CCGC.U.AA.C...CAA...............................................................AGCU..CA........A..UAUA.CU...U....CUAUG....GC.GA.A.AA.UGC.GCAU.G.C.UG.........CAACCUAAAUUG..CA................................................G..GA...AA...U.....G.C...GUG.A......A.C.GUU...U...C...GGU.G
   NC_006510.1       UG.A..U..CAAA.UA..UGUCGCCG...GG...CU............g.....................................cuCGGCG...GAAG.C..U...UUGG.GUUGUCCAUCAUUG...UCGU...CA...C...CAU...UU..UGAU........C..CG..CU.U.A...U.UG...AUU.UUG.CCGC.U.GA.U...G--auuc..................................aaca.....................GACG..CG........C..AACG.CG...A....AGGCG....AU.GC.A.--.---.-AGC.G.C.UU.........CAGCCGGAAAUU..GA................................................A..GC...GC...U.....C.C...GCA.A......A.A.AAU...A...C...A--.-
   NC_006512.1       UG.C..U..GCAG.UU..CUUACAAA...GC...AU....................................................CGUUA...UUAA.C..U...GGGG.UCUGGCUAUUAUCC...UGAC...CA...C...AGU...UA..UUGU........U..AA..AG.C.G...C.UA...UUG.UUC.CCGC.U.AA.C...UAA...............................................................GGCG..CA........A..UACG.UU...U....CAAUG....GC.UA.A.GA.UGC.GCAU.G.C.UG.........CAGCCAAAAAUG..AC................................................G..GC...UC...U.....G.C...GCG.A......G.C.GUU...A...U...GGU.G
   NC_006513.1       UG.C..U..GUCG.UG..GAUCCACG...GC...GU....................................................GGUCG...GCAA.C..U...GGGG.CUGGGCGAUCAUCA...UCGU...GA...C...GAU...CC..UGAU........C..AA..GC.U.G...A.UG...UUC.UUC.CCGC.U.GU.C...GGC...............................................................CGCG..AG........C..UACA.AG...U....CGAUG....GC.GA.A.GA.UGC.GGGU.G.C.UC.........GGUCCGCGCAUG..C-............aacgcc........................ugaaggA..GC...UG...U.....A.C...GGC.A......A.C.GAC...A...A...GGC.G
   NC_006526.2       UU.U..U..CUAU.UA..UCUCGACU...GG...UU............guuc...............................uugcaUGUCG...GAAA.U..U...AUGG.CCUUGCCAUCAUUC...UGAU...GG...U...GUU...UA..CCAU........C..CG..UG.C.U...U.UG...AUA.UUC.CCGA.U.UG.C...CAA...............................................................UAAA..CA........A..UAUG.CC...U....CAAUG....GC.UU.C.GA.UGC.GACG.G.U.UA.........CAGCCUAAAAUG..CA................................................G..GC...UG...U.....U.C...GUG.A......A.C.GUU...A...U...AAA.A
   NC_007204.1       UC.U..U..GGAU.GG..CAUUCAUA...AA...AU....................................................CAUCG...GCAA.C..U...GGGG.UUGGUCAAUCAUCC...UAUU...GA...C...UAU...CU..UGGU........C..AA..AU.U.CgcaU.UG...AUG.UGG.UUCU.C.AA.A...CAA...............................................................GAG-..--........C..UACU.AU...U....CAAUG....GC.GA.A.GA.UGC.GUGC.G.A.UU.........GC----------..--acc......gcgu...................................-..--...--...C.....U.A...GCA.-......G.C.GCU...A...A...AAG.A
   NC_007292.1       UA.U..U..GAGC.UU..UAUUUACA...GU...UA....................................................CAUAG...AAAA.U..U...GGGG.AAUAUCUAUUAUUA...UAAU...AA...C...AUU...AA..UUAU........A..CG..UC.U.A...A.UC...AUG.UAU.CCUU.U.AA.C...UAA...............................................................AGCA..CA........A..UAUA.CU...U....CUAUG....GC.AA.A.AA.UAC.GUAU.G.C.UA.........CAACCUAAAUUG..UC................................................U..AU...AA...U.....A.C...AAG.Aa...gaA.U.AUA...A...A...CAU.G
   NC_007484.1       UG.A..U..GAGU.UG..GUUUCACA...AC...CU....................................................AGUAG...GUAA.C..U...GGGG.AUGGGCCAUCGUGU...UGCU...AA...C...CUU...UG..UGGU........G..AA..GC.U.U...G.UU...UUC.UUC.AAGC.U.UU.C...CCA...............................................................GACU..AG........C..UAUC.GA...U....CUAUG....GC.UC.G.AA.UGC.GCAA.A.C.UG.........CAACCCCGUCUC..CU................................................C..GC...CC...U.....C.A...AGG.A......G.C.GUU...A...U...GGC.G
   NC_007510.1       UG.C..U..CGAG.AA..GAUCCACA...GC...UA....................................................CAUCG...GCAA.C..U...GGGG.CUGGUCGAUCGUGC...UGCU...CA...C...GCU...GC..UGAU........-..CA..AG.G.C..cG.UG...UUC.UUC.CCGC.U.GU.C...GGC...............................................................UGCG..AG........C..UACA.AG...U....CGAUG....GC.GC.G.CA.UGA.AGGA.A.A.UC.........ACGCCGCGCAUG..CA................................................G..GC...GC...U.....G.C...GCG.A......A.C.GCUucaA...G...AGC.G
   NC_007575.1       UU.C..U..GAUG.UG..GCUGCAUG...GU...CU....................................................AAUUG...GGAA.C..U...GGGG.UUGGUCAAUUGUUG...CGCU...UA...C...AGU...UU..UAAU........U..AG..AG.U.A...G.UU...CUC.UAU.CCUU.U.GA.C..aUAC...............................................................AAAG..--........G..UAUG.GU...U....UCUAU....GC.AA.A.-A.GAU.GAA-.-.-.--.........------------..--.............agauauagcaccucaaguuaaagcucuucaggcaa-..--...--...-.....-.-...---.A......A.U.AUA...A...G...GGU.G
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   NC_013851.1       UG.C..U..GAGC.UG..GAUCCAUG...CC...GU....................................................GGUGG...GCAA.C..U...GGGG.CUGGGCGAUCAUCG...UGCU...GA...C...CAU...CC..UGAU........C..AA..GC.U.C...G.CC...UUC.UAC.AAGC.U.CU.C...CGA...............................................................GAC-..CA........G.cUAUC.GC...U....CGAUG....GC.GC.A.CA.UGC.GUCA.G.A.UC.........ACGCCCCGGCUC..CA................................................G..GC...GC...U.....C.A...AGG.A......U.C.GCU...A...U...GGU.G
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   NC_013961.1       UG.C..U..GAAA.UU..CCUGCACG...GA...UU....................................................UAUCG...GUAA.C..U...GGGG.CUUCUCGAUUAUCG...UUAU...CA...C...CUU...UA..UCGU........A..CG..CG.G.C...A.UC...AUG.UAC.CCGU.U.GA.C...CAA...............................................................AGCG..CA........G..UACA.CA...U....CGAUG....GC.GA.A.AA.UGC.GCAU.G.C.UA.........CAGCCGAAAAUU..CA................................................G..GC...GA...U.....G.C...GUG.A......G.C.GUU...U...A...GGU.G
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   NC_014216.1       UG.C..U..UCAC.UU..UCUCUACG...GC...CU....................................................GGUGG...GUAA.C..U...ACGG.GGUGGCCAUCAUCC...UGGU...GA...C...GAU...UA..UCAU........-..CA..AG.G.C..uG.CC...UUC.UGG.CCGC.U.GA.C...CCA...............................................................GAAG..GG........U..UUGA.AG...U....CCAUG....AA.GG.U.GA.UGC.AGAA.G.A.UC.........CAGCCCAAAAUG..AC................................................A..AA...AU...U.....G.C...GGG.A......A.A.AAU...A...C...AAG.G
   NC_014217.1       UG.A..U..CGAC.UG..GAUCUACA...AG...GG....................................................UGUCG...GCAA.U..U...UCGG.CGUCGCCAUCCUGA...UCGU...CA...C...GGU...GA..UGCU........G..AA..GA.U.C...G.UC...UUC.UUC.CCGC.U.CG.C...CAA...............................................................UAAG..AG........C..UACG.CC...U....CGAUG....GC.GA.A.GA.UGA.AGGC.G.G.UG.........CAGCCGGAGAUC..AC................................................G..GC...CC...U.....G.C...GCG.A......G.C.GCU...A...C...GGC.G
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   NC_014315.1       UG.A..U..GAGU.UG..GUUUCACA...AC...CU....................................................AGUAG...GUAA.C..U...GGGG.AUGGGCUAUCGUGU...UGCU...AA...C...UUU...UG..UAGU........G..AA..AC.U.U...G.UU...UUC.UUU.AAGC.U.UU.C...CCA...............................................................GACU..AG........U..UAUC.GA...U....CUAUG....GC.UC.G.AA.UGC.GCAA.A.C.UA.........CAACCCCGUCUU..CU................................................C..GC...CC...U.....C.A...AGG.A......G.C.GUU...A...U...GGC.G
   NC_014365.1       GC.C..U..CAAU.UU..CUUCCACG...AU...UA....................................................CGUCA...ACAA.C..U...ACGG.CGUGGCCAUCAUCA...UCAU...CA...C...CGU...GC..UGAU........C..AA..GC.U.G...C.UG...UUC.UGG.CCGC.U.GC.-...---...............................................................AGAA..CAag....agC..UACG.AG...U....CGAUG....AA.GA.A.GA.UGC.AGAA.G.C.UU.........CAGCCGCAGAU-..--................................................A..GC...CA...A.....G.A...UCC.-......G.C.G--...A...G...AAG.U
   NC_014375.1       UG.G..U..CGAG.UU..CUUCUACG...GC...CU....................................................GGUCG...GCAA.C..U...UCGG.CGUGGCCAUCCUGC...UGCU...GA...C...GCU...GA..-CGA........U..CA..AG.C.U..gA.UC...AUG.UUC.CCGC.U.GG.C...CAA...............................................................CAAG..AG........C..UACG.AG...A....GCCUG....UC.CA.A.GA.UGC.GGAA.A.C.UC.........CAGCCGCUGAUG..GA................................................G..AA...GA...Uc..aaG.G...AGC.A......G.A.ACA...A...G...GAC.G
   NC_014394.1       CG.C..U..GACA.UU..UAUUCAGG...GC...AU....................................................GGUGC...AAAA.C..U...GGGG.GGUCGCAAUCAUCC...UGCU...AA...C...UGU...GC..UGAU........C..AA..AC.U.G...U.UG...UUU.UUC.CCUU.U.GU.C...GGC...............................................................GGCG..AG........U..UAUC.GC...U....CAAUG....GC.AA.A.AA.UGC.GUGU.G.G.UU.........GCGCCUAAACUG..GA................................................A..AA...AA...Uca.aaC.U...GCA.-......G.C.AUG...C...G...GAC.G
   NC_014414.1       UU.C..U..CGCC.UU..UUUCGAAG...GG...CU....................................................GACCG...GCAA.U..U...GGGG.CGUGGCGAUCCUGC...UCCU...CA...C...CCU...GG..UGAU........-..CA..AG.G.C..gG.UU...UUG.UUC.CCCC.U.CG.C...CAA...............................................................CAUG..UC........C..UACA.AA...U....CAAUG....GC.CG.G.GA.UGA.AAAA.G.G.UC.........CAACCCGAAUUG..AU................................................G..AA...GA...U.....U.C...GCG.A......G.C.GUU...A...U...ACU.G
   NC_014500.1       UG.C..U..GAAA.UU..CCUGCACG...GC...UU....................................................UAUCG...GCAA.C..U...GGGG.CUUCUCGAUCAUCG...CCAU...CA...C...CUU...UA..UCGU........G..CG..CG.G.C...A.UC...AUG.UAC.CCGC.U.GA.C...CAA...............................................................AGCG..CA........G..UACA.CC...U....CGAUG....GC.GA.A.AA.UGC.GCAU.G.C.UG.........CAGCCGAAACUG..CA................................................G..GC...AA...U.....G.C...GCG.A......G.C.GCA...U...C...GGC.G
   NC_014506.1       UU.C..U..UUCA.UG..GCUGCAUG...GU...AU....................................................UUUUG...GUAA.C..U...GGGG.AUGGGCGAUUAUUG...CUUU...AA...C...UGC...AC..UGAU........U..CG..UG.C.U...G.UU...UUA.UAU.CCUU.U.GA.C..aUAC...............................................................AAAG..--........G..UAUGgUC...U....CUAUG....CA.AA.A.GA.UGA.AAGA.G.C.UU.........GCGCCUAAGCUU..AA................................................A..GA...AU...U.....G.A...AAG.A......A.A.AAU...A...U...AAA.A
   NC_014541.1       UG.C..U..GAUG.UU..CCUGCAGA...GC...CU....................................................GGUGA...GCAA.C..U...GGGG.UGUGGCCAUCAUCC...UGAU...GA...C...CCU...GA..UCAU........C..CG..UG.G.U...U.UC...AUG.UAC.CCGC.U.GA.C...CAA...............................................................GGCG..CA........G..UACA.CC...U....CCAUG....GC.GA.A.GA.UGC.GCAA.G.C.UG.........CAGCCGAAACUG..GC................................................U..GA...CC...U.....G.A...AAG.A......G.C.GCU...U...C...GGC.G
   NC_014722.1       UG.C..U..CGAG.AA..GAUCCACG...GC...UU....................................................UGUCG...GCAA.U..U...GGGG.UUGGGCAAUCGUGU...UGCU...GA...C...GCU...GC..UGAU........-..CA..AG.G.C..gG.UG...UUC.UUU.CCGC.U.GU.C...GGC...............................................................UGCC..AG........U..UACA.AG...U....CGAUG....GC.GC.G.GA.UGA.AGGA.G.A.UC.........ACGCCGCGCAUG..CA................................................G..CA...GA...U.....C.C...GCG.A......G.C.GCUucaA...G...AGC.G
   NC_014762.1       UU.U..U..GAUG.UG..GCUUCACG...GA...CU....................................................CCUCG...GCAA.C..U...GGGG.AUGGUCGAUUAUCG...CAUU...GA...C...GAU...UA..UCAU........C..CG..UA.U.U...U.UC...CUC.UAC.CCUU.U.GA.C...UCA...............................................................CAAA..GG........G..AUGG.UC...U....CUAUG....CA.AA.A.AA.UCA.AAGA.G.A.UC.........GCACCGCGGAUC..AA................................................A..GA...AG...U.....U.C...AGG.A......A.A.AAU...A...C...AAA.G
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   NC_014844.1       GC.C..U..GAAC.UU..CUUCUACG...AC...UA....................................................CGUCC...ACAA.C..U...ACGG.CAUUGCCAUCAUCC...UGCU...GA...C...CAU...CG..UCAU........-..CA..AG.C.U..cA.UC...UUC.UGG.CCCC.U.GU.C...CC-...............................................................AGCG..CA.......gC..UACG.CC...U....CCAUG....GA.GC.A.GA.UGA.AGAA.G.C.UC.........CAGCCCAUGGUC..CA................................................G..AA...GC...U.....G.C...GCG.A......G.A.AGU...A...C...GGC.G
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   NC_014958.1       UC.A..U..GGAG.UG..GCUGUACA...GC...GU....................................................GCUGC...ACAA.C..U...GGGG.CCUCGUGAUUCUGG...UGCU...CA...C...GGU...CG..UGCU........G..CG..CG.C.C...G.CG...AUC.UGG.CCGC.U.CA.U...GCA...............................................................GACG..CAg.....ggC..AAAA.CG...A....CCGCG....CG.UA.-.--.UGC.AGCU.C.C.UG.........CAGCCGAAACUC..AA................................................G..GA...AG...U.....G.C...AGG.A......G.A.AGU...A...C...AAG.G
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   NC_015161.1       UG.A..U..GGAA.CU..GCUGCACC...GC...CU....................................................GGUGG...GCGA.C..U...GGGG.CAUCGUGAUUCUAU...UGAU...CG...C...CGU...GC..UGCU........G..CG..UC.U.G...G.UG...AUG.UGG.CCGG.U.GA.U...GCA...............................................................GGCG..CAg.....gcC..CGCA.CC...A....---CU....GC.CA.A.GA.UGC.AGGU.G.C.UG.........CAGCCCAAGAUG..AA................................................A..GA...AA...U.....C.C...AGG.A......C.C.GCU...A...C...AAG.G
   NC_015177.1       --.U..U..CAAU.UU..CUUCAACA...GU...UU....................................................UGCCU...UAAG.C..U...AUGG.CCUAAUCAUUUUAU...UACU...UA...C...GGU...UA..UUCU........G..AA..GG.G.A...G.CA...CUU.UUC.CCUU.U.CA.C...AUA...............................................................UAAA..UC........G..UAUU.UG...U....CUAUG....GC.UA.A.AA.UGA.GGGU.U.U.UA.........AAACCAGAAAUG..GA................................................U..GA...AA...Uu...aA.A...GCC.A......A.A.GUU...-...-...GGG.G
   NC_015186.1       CG.C..U..CGAC.UA..CCUCGCUG...GC...GU....................................................GUUCG...GCAA.C..A...UGGG.GGUGGCGAUCAUCG...UCUU...CA...C...CAU...CG..GGCU........G..AA..GC.U.G...G.UG...CUG.UUC.CCGC.U.GG.U...C--...............................................................CGCA..CCu......cC..UACC.GC...U....CGAUG....GC.GC.G.GA.UGC.GCGC.G.A.UC.........ACCCCGAAGGUC..CA................................................G..GC...GC...U.....G.C...GCG.A......G.C.GCU...A...C...AAG.G
   NC_015276.1       UA.C..U..AACU.GC..CAUUCAGU...CU...GU....................................................GGUUA...UCAA.C..U...GGGG.UGUAGCGAUUAUUU...UGAU...CG...U...UGU...CU..GUGU........G..AA..AG.C.C...G.UA...UUC.UUC.AAAC.U.GU.C...UGC...............................................................AGCA..AG........U..UAUC.GC...U....CAAUG....GC.GA.A.AA.UGC.GUAA.G.U.UU.........GGCCCAGAGCUA..AC................................................A..CG...CC...U.....U.C...GUG.A......A.C.AGU...A...U...GGU.G
   NC_015501.1       UG.A..U..UGAC.UU..CCUUCAGG...GC...UU....................................................UAUCU...CUAA.C..U...GGGG.UAUCAUCAUCCUUU...UGCU...GA...C...ACU...CA..UUAU........C..AA..GC.U.G...G.UC...CUC.UCG.CCAC.U.UA.C...CU-u.......................................ca.....................AGAG..--........C..UAUA.UG...U....CGCAA....GC.UA.A.GA.UGC.GUGU.C.U.UG.........AAGCCGCAAGUG..GA................................................G..GC...GA...U.....C.A...AUG.Cu...aaG.U.AUG...C...G...GGU.G
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   NC_015567.1       UG.C..U..GAAG.UU..CAUCCACG...GC...UU....................................................UAUCG...GUAA.C..U...GGGG.CUUCUCGAUCAUCA...UCAU...CA...C...CUU...CA..UCGU........G..CG..CG.G.C...A.UC...AUG.UAC.CCGC.U.GA.C...CAA...............................................................AGCG..CA........G..UACA.CC...U....CGAUG....GC.GA.A.AA.UGC.GCAU.G.C.UG.........CAGCCAAAACUG..CA................................................G..GC...GA...U.....G.C...GUG.A......G.C.GUA...U...C...GGU.G
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   NZ_LR217713.1     UU.U..U..AAAG.UU..UAUAAAUA...GC...UU....................................................UAUUC...AUAA.U..U...GGGG.UUUUUCAAUUGUCG...CUAU...UA...C...UUU...UA..UUGU........A..CG..UG.C.U...A.UU...ACG.UAC.CCUU.U.GA.C...UAA...............................................................AGCU..CA........G..UAUA.CU...U....CUAUG....GC.AA.A.AA.UGC.GUAU.U.U.UG.........CAACCAAAAAUU..CA................................................G..GA...AA...U.....G.C...GAG.A......A.C.GUU...G...U...GGU.A
   NZ_LR699007.1     UA.C..U..GAAG.UU..UAUCCACA...GC...UU....................................................CAUCG...GUAA.C..U...GGGG.CUUCUCCAUCAUCG...UUAU...CA...C...CUU...UA..UCGU........C..CG..CG.G.U...A.UC...AUG.UAU.CCGC.U.GA.C...CCG...............................................................UGCG..CA........A..UACA.CC...U....CAAUG....GC.GA.A.AA.UGC.GUAU.G.C.UU.........CAGCCGAAGCUG..AA................................................A..GC...AA...U.....G.C...GUG.A......G.C.GCA...U...C...GGU.G
   NZ_LR699553.1     UG.C..U..CGAG.AA..GAUCCACA...GC...UA....................................................UGUCG...GCAA.C..U...GGGG.CUGGUCGAUCGUGC...UGCU...CA...C...GCU...GC..UGAU........-..CA..AG.G.C..cG.UG...UUC.UUC.CCGC.U.GU.C...CGC...............................................................GGCG..AG........C..UACA.AG...U....CGAUG....GC.GC.G.CA.UGA.AGGC.G.A.UC.........ACGCCGCGCAUG..CA................................................G..GC...AC...U.....G.C...GCG.A......A.C.GCUucaA...G...GGC.G
   NZ_LR723670.1     UG.A..U..GGAC.UU..CUUCUUCC...GC...UA....................................................UUUCG...GAAA.C..U...UCGG.CGUGGCGAUCCUGA...UGAC...GA...C...GAU...CG..UCGU........-..CA..AG.G.C..gA.UC...UUC.UUC.CCGC.U.GG.C...CAG...............................................................CAAG..CA........A..UAUG.CC...U....CCAUG....GC.CA.A.CA.UGA.AGCG.C.G.UG.........CAGCCGAAGAUG..GA................................................A..GA...GC...Ug..aaA.G...CCA.A......G.C.AUG...G...C...GAC.G
   NZ_LR778175.1     UA.C..U..CCAC.UG..GUUUUAUA...AA...CA....................................................UGUGG...GGAA.U..U...GGGG.AUGGGCAAUAGUAU...UACU...CA...C...UAU...AG..UAAU........U..AA..AG.C.U...G.CU...UUU.UUU.AAAU.U.AU.C...UCA...............................................................AACU..AG........U..UAUC.GC...U....CGAUG....GC.AA.A.AC.UAC.GUAA.A.C.UU.........CAUCCACAGCUU..AC................................................G..GC...AA...U.....U.A...AAG.A......G.C.GAU...U...C...GGU.A
   NZ_LR861803.1     UG.C..U..GAGC.CA..CCUGCACA...GC...UU....................................................CCUGC...AUAA.C..U...GGGG.CUGGGCCAUCAUCG...GGCU...GG...U...GGUg.uUG..CUGC........G..CC..UG.G.C...G.C-...-UG.UAU.CCGC.U.GU.C...UGC...............................................................UGCG..CA........G..UACA.AG...U....CCGGU....GC.CA.A.GA.UGC.GCCG.C.U.UC.........CAGCCGCGCCUG..GC................................................G..CA...GC...U.....G.A...AGG.A......G.C.GCU...A...C...GGC.G
   NZ_LR884459.1     UG.C..U..AGAA.GG..UAUUCAUA...AG...GU....................................................ACUGG...GUAA.C..U...GGGG.UUGGUCAAUUAUUG...UAUU...GA...C...GAU...UU..UAGU........G..AAgaUU.G.C..gC.UG...AUG.UGG.UUCU.C.GA.A...UAA...............................................................GAG-..--........C..UACU.AU...U....CUAUG....GC.GA.A.GA.UGC.GAGC.U.A.UC.........GCGCCAAGACUA..CA................................................A..GC...CU...U.....A.A...AAG.A......A.G.AAC...A...C...GGC.G
   NZ_LR890047.1     UG.C..U..ACAA.UC..CAUUCAUG...GC...UU....................................................UAUUA...AAAA.C..U...GGGG.AUUCUCAAUUAUCC...UUAU...UA...C...CUU...UA..UUGU........U..CG..UG.G.G...A.UC...AUG.UAC.CCAU.U.GA.C...UAA...............................................................AGCU..CA........A..UACA.CU...U....CCAUA....GC.UA.A.AA.UGC.GUAU.A.U.UG.........CAACCCAAAUUG..UC................................................A..GC...UA...U.....G.C...GCG.A......C.C.GCA...U...C...GGU.A
   NZ_LR990739.1     UG.C..U..GAGC.CA..UCUGCACA...GC...UU....................................................CCUGC...ACAA.C..U...GGGG.CUGGGCCAUCAUCG...GGCU...GG...U...GGU...GC..UGCU........G.cGC..CU.G.-...G.CG...CUG.UAU.CCGU.U.GU.C...CGC...............................................................CGCG..CA........G..UACA.AG...U....CAGGC....GC.CA.A.GA.UGC.GCCG.C.U.UC.........CAGCCGCGCCUG..GC................................................G..CA...GC...U.....G.A...AGG.A......G.C.GCU...A...C...GGC.G
   NZ_LS483250.1     UG.U..U..ACAG.UU..CUUCCACG...GU...UU....................................................AGUGG...GUAA.C..U...GGGG.UAUUGCCGUCAUCA...UGAU...CA...C...GUU...UA..CCGU........G..CG..UG.G.U...G.CA...AUG.UAU.CCGC.U.AA.C...CAA...............................................................AGCG..CA........A..UAUA.CG...U....CAAUG....GC.UA.A.AA.UGC.GCUU.A.C.UA.........CAGCCUAAAUUA..AC................................................C..GC...AU...U.....A.C...GUG.A......A.A.AAU...G...U...GGU.G
   NZ_LS483377.1     UG.C..U..GAAC.CA..GGUGCACA...AG...CU....................................................GGUCG...GCAA.C..U...GGGG.CUGGGCGAUCGUCG...GUCU...GG...U...GGU...-G..CUGC........U..GA..AG.C.U..gG.UG...CUG.UAC.CCGC.U.GU.C...GGC...............................................................AACC..CA........G..UACA.AG...A....GCGGC....GC.CA.A.GA.UGC.GUCG.U.U.UC.........CAGCCGCGCAUC..GC................................................G..CA...GC...U.....G.A...AGG.A......A.C.GCU...A...U...GGC.G
   NZ_LS483422.1     UG.U..U..GAAA.UU..UAUUCACG...AU...UA....................................................CGUUG...GUAA.C..U...GGGG.CUUCUCCAUCAUCG...UUAU...CA...C...CUU...UA..UCGU........U..CG..UG.G.U...A.UC...AUG.UAC.CCGC.U.GA.C...UAA...............................................................AGCG..CA........A..UACA.CC...U....CGAUG....GC.GA.A.AA.UGC.GUUU.A.C.UG.........CAACCAAAAUUG..GC................................................U..GC...AA...U.....G.C...GUG.A......G.C.GUA...U...U...GGU.G
   NZ_LS483429.1     UA.U..U..AACC.UU..UAUUCAAG...GG...AU....................................................UGUGU...CUAA.C..U...GGGG.UUUAGCGAUUAUCU...GUGU...AA...C...AAU...UG..UAGU........G..AA..AG.C.A...A.UU...UUG.UAU.CCUC.U.UA.C...AAA...............................................................AGCA..CA........A..UAUA.CU...U....CAAUG....GC.UA.A.AA.UGC.GUAU.U.U.UG.........CAACCGAAAAUG..CA................................................A..GA...AA...U.....G.C...GUG.A......A.C.GUU...U...U...GGA.G
   NZ_LS483443.1     UG.C..U..GACA.UU..CAUUCAAC...AA...UU....................................................AGUUC...ACAA.C..U...GGGG.UGUGGCGAUCAUCU...GUGU...UA...C...CUU...AG..UGGU........U..AA..AG.C.G...A.UU...UUA.UAU.CCGC.U.CA.C...AAA...............................................................AGCA..CA........A..UAUA.CC...U....CAAUG....GC.UA.A.AA.UGC.GUAU.G.U.UG.........CAACCAAAAUUG..CA................................................A..GA...AA...U.....G.C...GCG.A......A.C.GUU...U...C...GGU.G
   NZ_LS483446.1     UG.C..U..GGAG.UA..CCUCCACC...AA...UA....................................................UAUUG...GAAA.U..U...GGGG.GUGGGCGAUCAUUA...CGCU...UA...C...UGU...GA..UUGU........C..AA..GC.U.U...G.UG...CUC.UAU.CCGC.U.GA.-...---...............................................................-GCU.aCAa.....ggG..UAUG.GU...G....AGCAU....GC.AA.A.AAcUAA.AAGA.U.C.UC.........ACGCCAAAAAUG..AA................................................G..GA...AA...Uc..caG.G...AAA.A......A.U.ACA...A...G...GGA.G
   NZ_LS483458.1     UA.U..U..AACC.UU..UAUUCAAG...GG...AU....................................................UGUAU...CUAA.C..U...GGGG.GGUAGCGAUUAUCU...GUGU...AA...C...AAU...CG..UGGU........G..AA..AG.C.A...A.UU...UUG.UAU.CCAC.U.UA.C...GAA...............................................................AGCA..CA........A..UAUA.CA...U....CAAUG....GC.UA.A.AA.UGC.GUAU.G.U.UG.........CAACCUAAAAUG..CA................................................A..GA...AA...U.....G.C...GUG.A......G.C.GUU...U...C...GGU.G
   NZ_LS483470.1     UG.C..U..GAAG.UU..CAUCCAGA...GC...UU....................................................CGUCG...GCAA.C..U...GGGG.CUUCUCUAUCAUCG...UCAU...UA...C...CUU...UA..UCGU........G..CG..CG.G.U...A.UC...AUG.UAC.CCGC.U.GA.C...GAA...............................................................GGCG..CA........G..UACA.CC...U....CGAUG....GC.GA.A.GA.UGA.AGCU.G.C.UG.........CAGCCUAAACUG..CA................................................G..GC...UA...U.....G.C...GUG.A......G.C.GCA...U...C...GGU.G
   NZ_LS999205.1     UG.C..U..GCAA.CA..UAUCCACA...GC...CU....................................................GGUGG...GUAA.C..U...GGGG.CUGGUCGAUCAUCU...UCCU...GA...C...CAU...GC..UGAU........C..AA..GG.G.G...A.UC...UUC.UUC.CCAC.U.GU.C...GGC...............................................................UGC-..CA........G.cUACA.AG...U....CCAUG....GC.AC.G.CA.UGC.GUGC.A.G.UG.........GCUCCGAAACUG..GC................................................C..GC...GC...U.....G.A...AGG.A......A.A.AAU...U...C...GGC.G
   NZ_LT594522.1     UA.U..U..AACU.AU..UAUAUAUA...GC...UA....................................................UACUU...GCAA.U..U...GGGG.GGUUUCUAUUAUUA...UCAU...UA...C...UUU...UA..UCGU........A..CG..UU.G.C...C.UU...AUG.UAU.CCUA.U.UA.C...AAA...............................................................AUCG..CA........G..UAUA.CU...U....CAAUG....UA.UA.G.AA.UGC.GUAU.U.C.UG.........CAGCCUAAACUA..AC................................................A..GC...GA...U.....A.C...GAG.A......G.C.GUU...U...A...UAU.G
   NZ_LT615367.1     UG.C..U..GAAA.UU..CCUGCACG...GC...UU....................................................UAUCG...GCAA.C..U...GGGG.CUUCUCCAUCAUUG...CCAU...CA...C...CUU...UA..UCGU........G..CG..CG.G.C...A.UC...AUG.UAC.CCGC.U.GA.C...UAA...............................................................AGCG..CA........G..UACA.CC...U....CGAUG....GC.GA.A.AA.UGC.GUAU.G.U.UG.........CAGCCCAAGCUG..CA................................................A..GC...GA...U.....G.C...GCG.A......G.C.GUA...U...C...GGU.G
   NZ_LT635455.1     UG.C..U..CGCG.GG..CAUCGAGG...GG...CU....................................................UGUCG...GCGA.C..U...GGGG.CCUGGCGGUGAUCA...UCCU...CA...C...CGU...GA..UCGU........G..CG..CC.U.C...A.UC...CUC.ACC.CCGC.U.CA.U...---...............................................................GGCC..CAc.....ucG..ACCC.GC...U....CGACG....GC.GC.G.CA.UGC.AGGU.C.A.UG.........CAGCCCAAGCUG..CA................................................G..GA...GA...U.....U.C...AGG.A......G.C.GCU...A...C...GCC.G
   NZ_LT853882.1     UA.C..U..GAGC.CA..UCUGCACA...GC...UU....................................................CCUGC...ACAA.C..U...GGGG.CUGGUCCAUUAUCG...GUCU...GG...U...GGUg.uUG..UUGC........G..UC..UG.G.C...G.C-...-UG.UAU.CCGC.U.GU.C...GGC...............................................................GGCG..CA........G..UACA.AG...U....CCGGU....GC.CA.A.GA.UGC.GCCG.C.U.UC.........CAGCCGCGCCUG..GC................................................G..CA...GC...U.....G.A...AGG.A......G.C.GUU...A...U...GGC.G
   NZ_LT855380.1     UG.C..U..GCAA.CA..UAUCCACG...CG...AU....................................................UCUCG...GCAA.C..U...GGGG.CUGGUCGAUCAUCG...UCCU...GA...C...CAU...GC..UGAU........C..AA..GG.G.U...C.UG...UUC.UUC.CCGC.U.CU.C...CGC...............................................................AGC-..CA........G.cUACA.AA...U....CCAUG....GC.CC.G.CA.UGC.GCGC.C.G.UA.........GCUCCGAAACUG..GC................................................C..UU...GC...U.....G.A...AGG.A......A.C.AAC...A...U...GGC.G
   NZ_LT859958.1     UC.U..U..GUUG.UU..AAUCAACU...CA...CU....................................................GGUUG...GUAA.U..U...UUGG.CAUCUCAAUUAUCC...UGUU...CA...C...GCU...CC..UGGU........U..CG..AU.U.A...A.UC...ACG.CAC.CCUU.U.GA.C...CGU...............................................................UAAA..CA........A..UUUA.AG...G....---CA....AC.CC.A.G-.---.--GG.A.A.UG.........CA---GCAACUU..CA.............aaacgauccacgc.........uauaaaaaaauaa-..--...--...-.....-.-...UGG.A......G.A.AAU...A...C...AAG.G
   NZ_LT897836.1     UG.C..U..AAAA.UU..UAUCCAUA...GC...UA....................................................UAUUA...GCAA.U..U...GGGG.UUUUUCUAUCAUCA...UAAU...CA...C...UUU...UA..UCGU........G..CG..CG.G.G...A.UC...AUG.UAU.CCGC.U.GA.C...UAA...............................................................GGCA..CA........A..UAUG.UA...U....CAAUG....GC.UA.A.GA.UGC.GUAU.G.U.UG.........CAACCAAAAAUU..GC................................................G..GC...GA...U.....A.C...ACG.A......G.C.GGC...U...A...GGU.G
   NZ_LT906434.1     UG.C..U..GGAU.AA..AUUGCAUG...GU...UU....................................................CGUUG...GUAA.C..U...GGGG.UUGGGCGAUUGUAU...UGCU...GA...C...CAU...UA..UUGU........G..AA..AG.C.G...A.UU...CUU.UAC.CCGC.U.CA.C...CAA...............................................................CGCU..UC........U..UACC.GU...U....CAAUG....GC.CA.A.AA.UGC.GUGC.C.G.UU.........GCGCCGCGUUUG..CA................................................G..GC...UU...U.....G.A...AAG.A......G.A.AGU...A...C...GGC.G
   NZ_LT906442.1     UG.A..U..GAAA.AU..AAUAUACA...AC...UU....................................................UGUUG...GUAA.C..U...GGGG.AUGGUCCAUUGUUU...UAGU...AA...C...AGU...UC..UCAU........-..CA..AG.U.U..aG.CU...UUC.UAU.CGAU.U.AU.C...AGC...............................................................AACA..AG........C..UAUA.AA...U....CCAUG....GC.UG.G.UA.UGA.GAAA.A.U.UA.........CAACCUAAACUA..CA................................................A..GC...AU...U.....G.C...GUG.A......A.A.GGU...A...U...GGC.G
   NZ_LT906448.1     UA.C..U..AACA.UU..UAUCCAAA...GU...AU....................................................CGUGC...AUAA.C..U...GGGG.ACUGGCAAUCAUCG...GUGU...AA...C...UUU...AG..UAGU........G..AA..AG.C.G...A.UU...UUA.UAU.CCAU.U.AA.C...UAA...............................................................AGCG..CA........A..UAUA.CU...U....CGAUG....GC.UA.A.AA.UGC.GUAU.G.U.UA.........CAGCCAAAACUU..CA................................................A..GA...AA...U.....G.C...GCG.A......G.C.GUU...U...U...GGU.G
   NZ_LT906451.1     UC.A..U..GAAA.GC..GAUUUACG...CC...AU....................................................UGUUG...GUAA.C..U...GGGG.CUGGGCAAUUGUUA...UUGU...AA...C...GAU...UU..UAAU........C..AAacUG.G.C...A.U-...-UC.UAC.CGUU.U.AU.C...AGC...............................................................AAGU..AG........C..UAUA.AA...U....CCAUG....GC.AG.G.AA.UGC.GCAA.A.C.UC.........CAGCCCAAACUG..CA................................................A..GC...GU...U.....A.C...GUG.A......G.C.GUU...A...U...GGC.G
   NZ_LT906463.1     UG.C..U..GACC.UU..UAUUCAAA...AA...UU....................................................AGUGC...AUAA.C..U...GGGG.CUUGGCGAUCAUUU...GCGU...UA...C...CUU...AA..UUGU........G..AA..AG.C.A...A.UU...UUG.UAU.CCGU.U.GA.C...CAA...............................................................AGCA..CA........G..UACA.CU...U....CAAUG....GC.AA.A.AA.UGC.GUAU.G.U.UG.........CAGCCGAAAAUG..CA................................................G..GA...AA...U.....G.C...GUG.A......A.C.GUU...U...C...GGU.G
   NZ_LT906479.1     UG.U..U..GAAG.UU..CAUCCACG...GC...UU....................................................UAUCG...GUAA.C..U...GGGG.CUUCUCCAUCAUCA...UCAU...CA...C...CUU...CA..UCGU........G..CG..CG.G.C...A.UC...AUG.UAC.CCGC.U.GA.C...CAA...............................................................GGCG..CA........G..UACA.CC...U....CGAUG....GC.GA.A.AA.UGC.GCAU.G.C.UG.........CAGCCAAAAUUG..CA................................................G..GC...GA...U.....G.C...GCG.A......G.C.GUA...U...C...GGU.G
   NZ_LT907975.1     CC.A..U..GGAC.UU..CUUUUAUG...AU...UA....................................................CGUAG...GCAA.C..U...ACGG.UAUCGCGAUCAUCU...UGCU...GA...C...CAU...CG..UCAU........-..CA..AG.C.U..gA.UU...UUC.UGG.CCGC.U.UU.C...UCA...............................................................GAAG..AG........C..UACG.AA...U....CCAUG....GA.GC.A.CA.UGA.AGAA.A.C.UG.........CAGCCCAUGGU-..--................................................A..GC...CA...A.....G.C...U--.-......U.C.GCG...A...G...AAG.U
   NZ_LT960614.1     UC.A..U..CGAC.CA..CUUCUACA...AG...CU....................................................CUUCG...GUAA.C..U...UCGG.UGUCGCGAUCCUGC...UCGU...CA...C...GGU...-C..UGCG........U..CA..AG.G.C..gA.UC...UUC.UAU.CCGC.U.CG.C...CAA...............................................................CAAG..UC........C..UAUG.UG...U....CGAUG....AG.CA.A.GA.UGA.AGCU.C.G.UC.........CAGCCGAAGAUG..CA................................................G..GA...GA...U.....C.A...AGG.A......G.C.GCU...A...C...GCC.G
   NZ_OU015430.1     UG.C..U..GGCC.AA..GCUGCACG...GC...CU....................................................GUUCG...GCAA.C..U...GGGG.CUGGGCGAUCGUCG...GCCU...GG...U...GGU...GA..UCAU........-..CA..AG.G.C..gG.UG...AUG.UUU.CCGC.U.GU.C...GGC...............................................................CGCG..CA........G..UACA.AG...U....CGAUG....GC.CA.A.GC.UGC.GCAA.G.U.UC.........CAGCCGCGCAUG..GC................................................G..CA...GC...U.....C.A...AGG.A......G.C.GUU...A...C...GGC.G
   NZ_OU343031.1     UG.C..U..CGAG.AA..GAUCCAUA...GU...UU....................................................UAUUA...GUAA.C..U...GGGG.UUGGUCAAUUGUGU...UGCU...UA...C...GCU...AU..UAAU........U..AA..GG.C.G...A.UU...UUU.UUC.CCGC.U.UU.C...AGC...............................................................GGCU..AG........C..UAUA.AA...U....CCAUG....GC.UC.G.AA.UGA.AAGA.A.A.UU.........ACACCGCGUAUG..AG................................................A..CA...GC...U.....U.C...GUG.A......A.C.GUUuuaA...G...AGC.G
   NZ_OU594967.1     UC.U..U..GAAA.UU..CUUGCAUA...GC...AU....................................................AGUUG...GCAA.C..U...GGGG.UGUCGCGAUUAUCC...UGAU...UA...C...AUU...GA..UUGU........A..AA..AG.G.G...G.UG...AUG.UAU.CCAU.U.GA.C...UCG...............................................................UGCU..CA........G..UACA.CU...U....CAAUG....GC.AA.A.AA.UGC.GUAU.U.C.UC.........CAGCCGAAAAUG..AA................................................A..GA...GC...U.....G.C...GUG.A......A.C.GCU...A...U...GCA.G
   NZ_OU907312.1     UG.U..U..GAAG.UU..UUUGCAUC...GU...UU....................................................UGUGG...GUAA.U..U...GGGG.GGCGGCGAUUCUCU...GUAU...CA...C...UUU...UG..UGGU........G..CG..UG.G.U...C.UG...UUG.UAC.CCCU.U.GA.C...CAA...............................................................AGCU..CA........G..UACA.CU...G....CCAUG....GC.UA.A.GA.UGC.GCCU.G.U.UG.........CAACCCAAACUA..CU................................................G..GC...GA...U.....G.C...GUG.A......A.C.GCU...G...U...GGA.G
   NZ_OU912926.1     UA.C..U..UUCU.UA..CCUGUACG...GC...UG....................................................GGUGU...CCAA.C..U...GGGG.UAUAGCCAUUAUCU...UGUU...GA...C...UGU...UU..UUAU........U..-A..AA.U.U...A.UU...AUU.UUU.CCCC.U.UG.U...CUG...............................................................CGGC..CA........G.uUAUC.GC...U....CUAUG....GG.AA.A.AA.UGC.GUGU.A.G.UG.........GCCCCCAAGUUG..GA................................................G..AA...AA...U.....U.A...AGC.A......G.C.AAU...A...U...GGU.G


   Structure         ((.(..(............(((((((..............................................................)))))...))...........................................................(((...........((..((.(.............((.(((..(((.(..........................................................................))))............)..))))...........)))))....)).)....((.(((..(((.(.(..............(((...........................................................)..))..............).)...)))........).).)))...........))).)


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yidC



Position: 1041-1175, Conformation: #0







97% 90% 75% 50% Nucleotide present N N N Nucleotide identify E < 0.1 Base-pair covariation E < 0.05 Helix-level covariation 97% 90% 75%

U Y U U Y A Y R R U R U R G Y A A Y U R G G Y C A U Y R U Y U A C U U R U R U U U Y C C Y U C R U A Y U C A U G G C R A R A U G R R U R C C A R U R G U R G A R Y R Y R R G 5'