ybjC-nfsA-rimK-ybjN



Position: 40-129, Conformation: #0







DMS reactivity > 1.0 0.0 0.4 0.7 G/U/No data
Position: 0 (position.label in template: 0.5')5' Position: 1 (position.label in template: 1.A) Reactivity: nanA Position: 2 (position.label in template: 2.U) Reactivity: nanU Position: 3 (position.label in template: 3.G) Reactivity: nanG Position: 4 (position.label in template: 4.C) Reactivity: nanC Position: 5 (position.label in template: 5.G) Reactivity: nanG Position: 6 (position.label in template: 6.C) Reactivity: nanC Position: 7 (position.label in template: 7.G) Reactivity: nanG Position: 8 (position.label in template: 8.C) Reactivity: nanC Position: 9 (position.label in template: 9.G) Reactivity: nanG Position: 10 (position.label in template: 10.A) Reactivity: nanA Position: 11 (position.label in template: 11.U) Reactivity: nanU Position: 12 (position.label in template: 12.C) Reactivity: nanC Position: 13 (position.label in template: 13.G) Reactivity: nanG Position: 14 (position.label in template: 14.G) Reactivity: nanG Position: 15 (position.label in template: 15.U) Reactivity: nanU Position: 16 (position.label in template: 16.A) Reactivity: nanA Position: 17 (position.label in template: 17.A) Reactivity: nanA Position: 18 (position.label in template: 18.A) Reactivity: nanA Position: 19 (position.label in template: 19.U) Reactivity: nanU Position: 20 (position.label in template: 20.U) Reactivity: nanU Position: 21 (position.label in template: 21.G) Reactivity: nanG Position: 22 (position.label in template: 22.C) Reactivity: nanC Position: 23 (position.label in template: 23.C) Reactivity: nanC Position: 24 (position.label in template: 24.U) Reactivity: nanU Position: 25 (position.label in template: 25.A) Reactivity: nanA Position: 26 (position.label in template: 26.A) Reactivity: nanA Position: 27 (position.label in template: 27.A) Reactivity: nanA Position: 28 (position.label in template: 28.G) Reactivity: nanG Position: 29 (position.label in template: 29.G) Reactivity: nanG Position: 30 (position.label in template: 30.C) Reactivity: 0C Position: 31 (position.label in template: 31.G) Reactivity: nanG Position: 32 (position.label in template: 32.U) Reactivity: nanU Position: 33 (position.label in template: 33.G) Reactivity: nanG Position: 34 (position.label in template: 34.U) Reactivity: nanU Position: 35 (position.label in template: 35.U) Reactivity: nanU Position: 36 (position.label in template: 36.G) Reactivity: nanG Position: 37 (position.label in template: 37.A) Reactivity: 1A Position: 38 (position.label in template: 38.U) Reactivity: nanU Position: 39 (position.label in template: 39.A) Reactivity: 0A Position: 40 (position.label in template: 40.C) Reactivity: 0.5C Position: 41 (position.label in template: 41.U) Reactivity: nanU Position: 42 (position.label in template: 42.G) Reactivity: nanG Position: 43 (position.label in template: 43.G) Reactivity: nanG Position: 44 (position.label in template: 44.A) Reactivity: 0A Position: 45 (position.label in template: 45.A) Reactivity: 0A Position: 46 (position.label in template: 46.U) Reactivity: nanU Position: 47 (position.label in template: 47.U) Reactivity: nanU Position: 48 (position.label in template: 48.U) Reactivity: nanU Position: 49 (position.label in template: 49.A) Reactivity: 0A Position: 50 (position.label in template: 50.U) Reactivity: nanU Position: 51 (position.label in template: 51.C) Reactivity: 0C Position: 52 (position.label in template: 52.G) Reactivity: nanG Position: 53 (position.label in template: 53.G) Reactivity: nanG Position: 54 (position.label in template: 54.A) Reactivity: 0A Position: 55 (position.label in template: 55.A) Reactivity: 0A Position: 56 (position.label in template: 56.U) Reactivity: nanU Position: 57 (position.label in template: 57.G) Reactivity: nanG Position: 58 (position.label in template: 58.A) Reactivity: 1A Position: 59 (position.label in template: 59.U) Reactivity: nanU Position: 60 (position.label in template: 60.G) Reactivity: nanG Position: 61 (position.label in template: 61.C) Reactivity: 0C Position: 62 (position.label in template: 62.U) Reactivity: nanU Position: 63 (position.label in template: 63.A) Reactivity: 1A Position: 64 (position.label in template: 64.C) Reactivity: 0C Position: 65 (position.label in template: 65.U) Reactivity: nanU Position: 66 (position.label in template: 66.G) Reactivity: nanG Position: 67 (position.label in template: 67.G) Reactivity: nanG Position: 68 (position.label in template: 68.C) Reactivity: 0C Position: 69 (position.label in template: 69.G) Reactivity: nanG Position: 70 (position.label in template: 70.G) Reactivity: nanG Position: 71 (position.label in template: 71.U) Reactivity: nanU Position: 72 (position.label in template: 72.G) Reactivity: nanG Position: 73 (position.label in template: 73.G) Reactivity: nanG Position: 74 (position.label in template: 74.C) Reactivity: 0C Position: 75 (position.label in template: 75.G) Reactivity: nanG Position: 76 (position.label in template: 76.C) Reactivity: 1C Position: 77 (position.label in template: 77.U) Reactivity: nanU Position: 78 (position.label in template: 78.G) Reactivity: nanG Position: 79 (position.label in template: 79.C) Reactivity: 0.5C Position: 80 (position.label in template: 80.U) Reactivity: nanU Position: 81 (position.label in template: 81.G) Reactivity: nanG Position: 82 (position.label in template: 82.U) Reactivity: nanU Position: 83 (position.label in template: 83.C) Reactivity: 1C Position: 84 (position.label in template: 84.G) Reactivity: nanG Position: 85 (position.label in template: 85.G) Reactivity: nanG Position: 86 (position.label in template: 86.U) Reactivity: nanU Position: 87 (position.label in template: 87.A) Reactivity: 0.5A Position: 88 (position.label in template: 88.A) Reactivity: 0A Position: 89 (position.label in template: 89.G) Reactivity: nanG Position: 90 (position.label in template: 90.C) Reactivity: 0C Position: 91 (position.label in template: 91.G) Reactivity: nanG Position: 92 (position.label in template: 92.A) Reactivity: 0A Position: 93 (position.label in template: 93.C) Reactivity: 0C Position: 94 (position.label in template: 94.U) Reactivity: nanU Position: 95 (position.label in template: 95.C) Reactivity: 1C Position: 96 (position.label in template: 96.C) Reactivity: 0.5C Position: 97 (position.label in template: 97.C) Reactivity: 0.5C Position: 98 (position.label in template: 98.U) Reactivity: nanU Position: 99 (position.label in template: 99.G) Reactivity: nanG Position: 100 (position.label in template: 100.U) Reactivity: nanU Position: 101 (position.label in template: 101.C) Reactivity: 0C Position: 102 (position.label in template: 102.G) Reactivity: nanG Position: 103 (position.label in template: 103.C) Reactivity: nanC Position: 104 (position.label in template: 104.U) Reactivity: nanU Position: 105 (position.label in template: 105.G) Reactivity: nanG Position: 106 (position.label in template: 106.C) Reactivity: nanC Position: 107 (position.label in template: 107.C) Reactivity: nanC Position: 108 (position.label in template: 108.U) Reactivity: nanU Position: 109 (position.label in template: 109.G) Reactivity: nanG Position: 110 (position.label in template: 110.A) Reactivity: nanA Position: 111 (position.label in template: 111.G) Reactivity: nanG Position: 112 (position.label in template: 112.C) Reactivity: nanC Position: 113 (position.label in template: 113.C) Reactivity: nanC Position: 114 (position.label in template: 114.A) Reactivity: nanA Position: 115 (position.label in template: 115.U) Reactivity: nanU Position: 116 (position.label in template: 116.U) Reactivity: nanU Position: 117 (position.label in template: 117.U) Reactivity: nanU Position: 118 (position.label in template: 118.U) Reactivity: nanU Position: 119 (position.label in template: 119.C) Reactivity: nanC Position: 120 (position.label in template: 120.U) Reactivity: nanU Position: 121 (position.label in template: 121.C) Reactivity: nanC Position: 122 (position.label in template: 122.G) Reactivity: nanG Position: 123 (position.label in template: 123.G) Reactivity: nanG Position: 124 (position.label in template: 124.C) Reactivity: nanC Position: 125 (position.label in template: 125.C) Reactivity: nanC Position: 126 (position.label in template: 126.A) Reactivity: nanA Position: 127 (position.label in template: 127.G) Reactivity: nanG Position: 128 (position.label in template: 128.A) Reactivity: nanA Position: 129 (position.label in template: 129.A) Reactivity: nanA Position: 130 (position.label in template: 130.G) Reactivity: nanG Position: 131 (position.label in template: 131.3')3' 10 20 30 50 100


ybjC-nfsA-rimK-ybjN



Position: 40-129, Conformation: #0







Retained alignments:


   NC_007951.1       GCUUUUUUA.CGGcGAACU...............................UC..CC.UGAAUACUG..GCU...GUUCUU------UCUCG..GUCUGAUUUUC...GUGCUGG..UCCCGCU..GUUCCUGCCGAA.....................CGGC.AUCA.UGGG.G.CU..GAUCGAA.CUCGU...GA.C...G...C.....GC.-AAG
   NC_009792.1       GCGCUCGAU.UAG.CGCUU...............................UA..CC.CAAAAGCGU..GUU...GAUUCUGGAAAUUCUCG..GUAUGAUUUUG...CUGGCAG..CGGCGUU..GCUGUCGCUCAA.....................UCAG.UACC.UCAC.A.UU..ACCCGCG.CCG-A...UG.A...A...C.....AG.CCCG
   NC_010524.1       GCGCUGCA-.CGA.CGCCU...............................CG..AC.CAUCGCCGC..GGU...GAUCGUCGAGCCUGUGG..C--CGGCUCGA...CCGGCG-..---UGCU..GGUGCCGCCCAC.....................CGGC.UACC.UG-C.A.GC..GCCUGCG.CCAG-...--.A...U...C.....UG.CGAC
   NC_010681.1       GCUUUUUCA.CGGcGAACU...............................UC..CC.UGAAUACUG..GCU...GUUCUU------UCUCG..GUCUGAUUUUC...GUGCUGG..UCCCGCU..GUUCCUGCCGAA.....................CGGC.AUCA.UGGG.G.CU..GAUCGAC.CUCGU...GA.C...G...C.....GC.-AAG
   NC_012880.1       GCACAUGA-.CGU.GAUUA...............................UC..AC.CAUGGGCGU..ACU...GUCGCUGUUCAAUAUUG.aAAUCGAUUUGA...CCAUUGUggCGUCGUU..GAUGUCGGUCAU.....................CGGC.UACU.CGCU.GaAC..GACAGCA.UCGUG...GU.U...U...C.....UG.ACCG
   NC_014119.1       GCGCUCGAU.C--.-----......................u......uc--..--.----GAGGU..GUC...GGCGAUCGCAUUGAUCG..UCUCGUGGUUC...GCGGCGG..UCGUGCU..CGUGCCGUUGCU.....................CGGC.UUUC.AUAU.G.CU..GCCCGAA.CGCAA...AG.G...U...CacgagGG.CG--
   NC_014500.1       GCGCACGA-.CGU.GAUUA...............................UC..AC.GAUGGGCGU..GCU...GUCGCUGUUCGAUAUUG.aAAUCGACCUGA...CCAUUGUggCGUCGUU..GAUGUCGGUCAU.....................CGGU.UACU.CGCU.GaAC..GAUAGCA.UCGUG...GU.U...U...C.....UG.ACCG
   NC_015567.1       GCGCACGA-.CGU.GAUCA...............................UC..AC.UAUGGGCGU..GCU...GUCGCUGUUCCAUAUCG.aGAUUGACCUGA...CCAUUGUcgCAUCAUU..GAUGUCGGUUAU.....................CGGU.UACU.CGCU.GaAC..GACAGUA.UCGUG...GU.U...U...C.....CG.ACCG
   NC_021870.1       GCGCACGAU.UGG.CGCGU...............................UA..CC.UAAAAGCGU..ACU...GAUUCUGGAAUUCCUCG..GUAUGAUUUUG...CUGGCGC..UGGCGUU..AUUGUCGCUAAA.....................UCAU.UACC.UCAC.G.CU..GCCGGCG.CCGUUuaaUG.C...G...C.....CG.CUGG
   NZ_AP014936.1     GCACGUCUU.CGU.CGUAU...............................CG..AC.GAUAGGCGU..GUU...GCGGCC------UCUCG..GGCCGCGGCAG...CAGGCCG..CGGCGCU..GGU---------aguaacgcaccguuucgacgc----.-CCA.CGCCgG.CG..GCGCGAG.CCAUU...CU.C...C...C.....GA.-UGG
   NZ_AP022595.1     CCCGGCGAA.GCA.GGGAU...............................CC..UG.C--UGGCCGuuGGG...GAUCGUCGCGUUGC---..UGGUGAUGAAC...UUCGCGC..UGACGCC..ACUGUCGGUGAC.....................CGAC.ACGC.UGUC.G.GC..GUGAAUG.CCCAU...--.-...-...-.....--.CGGC
   NZ_AP022596.1     CCCGGCGAA.GCA.GGGAU...............................CC..UG.C--UGGCCGuuGGG...GAUCGUCGCGUUGC---..GGGUGAUGAAU...UUCGCGC..UGACCCC..GCUGUCGGUCAC.....................CGAG.ACGC.UGUC.C.GC..GUGAAUG.CCCAU...--.-...-...-.....--.CGGC
   NZ_AP023418.1     -GAAGCGGC.UGG.UGGAC...............................CG..CC.GCAAGGGCU..AUU...GAUAACGGGAUAUAGAA..GUAUAUAGGAA...CAGGGCC..UGCCGCU..A-----------u...................g----.----.CGGC.A.GG..CCCUGUU.CCUUU..gUG.C...C...G.....CC.CCGA
   NZ_AP024722.1     GCUGUCGGC.UGG.UUGAU...............................-G..CC.---AUGGCG..GUC...ACCACGG----UUACCG..GCAUGCUGCUG...GCAGCGG..UCGCCAU..GCUGGU------....................g-GCC.AACC.GGCU.G.CU..GCCUGAGgCC--A...UG.C...C...C.....GG.-CCG
   NZ_CP009291.1     GCGCACGAU.CGG.CGUCU...............................CG..CC.GAUGGAAGC..GCU...GGUGGUG-------CCG.cGCGUGCUGGC-...--CUCGA..UGAUCAU..GAUGCCGCUGCU.....................CGGC.UUCU.GGUC.G.GC..G----AU.CCUCG...CG.A...UcauC.....GG.-C--
   NZ_CP009365.1     GCUGUCGGU.UGG.UUGAC...............................-G..CC.---AUGGCA..GUC...ACCACGG----UUACCG..GCAUGCUGCUG...GCAGCGG..UCGCCAU..GCUGGC------....................g-GCC.AACC.GGCU.G.CU..GCCUGAG.CCC-A...UG.C...C...U.....GG.-CCG
   NZ_CP009571.1     GCGCACCAU.CGG.CGUCU...............................CG..CC.GAUGGAGGC..GCU...GGUGCUG-------CCG.cGGACGAUCGC-...--GGCGG..UGCUGCU..GAUGCCGCUGCU.....................CGGC.UUCU.AUUC.C.UC..GCU--GA.UCGCG..aUC.A...U...C.....GG.-CGG
   NZ_CP011254.1     GCGCACGA-.CGU.GGUCA...............................UC..AC.CAUGGGUGU..GCU...GUCGCUGUUCCAUAUCG.aGAUUGACCUGA...CCAUCGUggCAUCCUU..GAUGUCGGUGAU.....................CGGU.UACU.CGCU.GaAC..GACAGUA.UCGUG...GU.A...U...C.....UG.ACCG
   NZ_CP012621.1     UUGCCCAAC.UGC.UGGUA...............................CA..GC.AGCCAGGGC..AGG...GUUUGCAGAU----GCU..GGCUGCCGAAC...AUGGCGA..UGGCGCU..GAGAUCGCCCAG.....................CGA-.-CAG.CAUC.A.UC..GCCAGGG.CCAGU...GC.C...A...G.....GG.CGGC
   NZ_CP012871.1     GCGUUCGCU.UGG.AUCGU...............................UA..CC.GAAAAGCGU..GCU...GAUACUGGAAGGCAUCG..GCAUGGCGCUG...CUGGCGC..UGGCCUG..GCUUUCGCUCAA.....................GCAG.UACG.UCUC.G.CU..GCCCGCG.CCGUU...UG.A...-...C.....GG.CGAG
   NZ_CP012908.1     GCGCGCGAUgUGG.UCG--...............................GG..CC.AAAUGGCGC..GGU...GUCGCUGGAAGAUGGCG..GCGUGCU--GA...CCCGCCG..CAGCGCC..GCG---------c..................ug----.--GA.CGCGgG.CG..GCGCGCG.AUUGU...CG.C...C...C.....GA.UCAG
   NZ_CP013070.1     GCGCACCAU.CGG.CGUGU...............................CG..CC.GAUGGAGGC..GCU...GGUGCUG-------CCG.cGCACGCUGGC-...--GGUGG..UGGUGAU..GAUGCCGCUGCU.....................GGGCuUUUA.UUCC.U.CC..AUC--GU.CGCGA...UC.A...U...C.....GG.-CGG
   NZ_CP014007.2     GCGCACGA-.CGU.GAUCA...............................UU..AC.CAUGGGCGU..GCU...GUCGCUGUUCCAUAUCG.aGAUUGACCUGA...CCAUCGUggCAUCGCU..GAUGUCGGUGAU.....................CGGC.UACU.CGCU.CaAC..GACAGUA.UCGUG...GU.A...U...C.....UG.ACCG
   NZ_CP014070.2     GCGUAUGAC.CGG.CGCGU...............................UA..CC.GAAAAGUGU..AUU...GAUUCUGGAAAUGGUGG..GUAUGGUGCUC...CUGGCGC..UGGCUUU..GCUGUUGCUGAA.....................CCAC.UACC.UGAC.G.CU..UCCCGCG.CCGUU...UA.A...-...C.....AG.CUCG
   NZ_CP014136.1     GCCAGCGU-.GGG.CAAAU...............................CG..CC.-AUUGGCUG..GCU...GAUUGUUGAAGAUUUGG..CCAUGGUGCU-...--GACGC..UGGUGCU..GCUGCCGGCCGU.....................CGGC.AACC.UGAUgG.GC..AGC--GG.CAAUG...CC.A...G...C.....AC.CGGC
   NZ_CP014168.1     GCGCACGAU.CGG.CGUCU...............................CG..CC.GAUGGAGGC..GCU...GGUGCUG-------CCG.cGCGUGAUGGC-...--GGUGG..UCAUCAU..GAUGCCGCUGCU.....................CGGU.UUCU.AUUC.G.GC..GCUG-GU.CGGGA...UC.G...U...C.....GG.-CGG
   NZ_CP015613.1     GCCAGCGC-.GGG.CAAAU...............................CG..CC.-AUCGGCUG..GCU...GAUCGUGGAAGAUCUGG..CGAUGGUGCU-...--GACGU..UGGUGCU..GCUGCCGGCCUU.....................CGGC.AACA.UGAU.G.--..-----AG.CAAUG...AC.A...-...A.....CG.CCAG
   NZ_CP016948.1     CUGGCGGAU.U--.-----......................uucuacggc--..--.-GACGCGCU..GGC...GAUGAUCGGUUUUUACG..GGGUGAU----...--CGCCC..UGCUGCU..GCUGUCGCUGUU.....................CGGC.AGCC.-UGCuG.--..GCGC---.-CCUA...CG.C...G...Cu...gGA.UCAG
   NZ_CP017454.1     GCGCACGA-.CGU.UAUCA...............................UC..AC.UAUGGGCGU..GCU...GUCGCUGUUCUCUAUUG.aAAUCGACCUGA...CCAUUGUggCGUCGCU..GAUGUCGGUCAU.....................CGGC.UACU.CGCU.GaAC..GACAGCA.UCGUG...GU.U...U...C.....UG.ACCG
   NZ_CP019650.1     CCGGGGAA-.---.-----...............................--..--.----ACCCU..GGA...GCAAUUUGAAUUUAUCG..GGGAGCUGGCU...CUAUCCG..GCGGCCU..GCGCCCGGUACC.....................CGGG.--GG.GCUG.C.CG..G--CGGC.CAUGG...CU.U...G...C.....GG.CGAC
   NZ_CP020388.1     GCGCACGA-.CGU.GGUGA...............................UC..AC.CAUGGGCGU..GCU...GUCGCUGUUCCGUAUCG.aAAUCGAUCUGA...CCAUUGUcgCCUCGCU..GAUGUCGGUUAU.....................CGGC.UACU.CGCU.CaAC..GACAGUA.UCGUG...GU.C...U...C.....GG.ACCG
   NZ_CP022989.1     GCUUCUUUA.CGGcGAACU...............................UC..CC.UGAAUACUG..GCU...GUUCUU------UCUCG..GUCUGAUUUUC...GUGCUGG..UCCCGCU..GUUCCUGCCGAA.....................CGGC.AUCA.UGGG.G.CU..GAUCGAA.CUCGU...GA.C...G...C.....GC.-AAA
   NZ_CP023147.1     ---AGCGGA.UGC.GG---...............................CC..GC.CGCGGGCGU..ACA...GGUUCG--GGGUGA---..GCGCGAGGUAA...CCCGCCC..GGGCGAU..GCGGUCGUUGAU.....................CGAC.UGCU.UGUC.C.CG..GCCGUAG.CCGAU...CG.C...-...-.....--.AUCG
   NZ_CP023525.1     GCGCACGA-.CGU.GAUUA...............................UC..AC.GAUGGGCGU..GCU...CUCGCUGUUCCACAUCG.aGAUUGACCUGA...CUAUUGUcgCGUCGUU..GAUGUCGGUUAU.....................UGGC.UACU.CGCU.GaAC..GACAGCA.UCGUG...GU.U...U...C.....GG.ACCG
   NZ_CP023741.1     GCGCACCAU.CGG.CGUGU...............................CG..CC.GAUGGAGGC..GCU...GGUGCUG-----CCCCGcaCCCUGGCGGU-...-----GG..UGGUGAU..GAUGCCGCUGCU.....................CGGC.UUCUaUUCC.-.--..--UCGAU.CAUCG...CG.AucaU...C.....GG.-CGG
   NZ_CP024608.1     GUUGGCUGC.AGG.CCGAU...............................GC..CC.CAGAUGCCG..ACC..aGCGUUUCGAGCUUGUCG..GCCAGC-GCCA...C----GG..CGGUGCC..GGUGUCGGUCGA.....................CGGC.AGGG.UGUC.G.CC..-----AG.CGA--...AG.C...G...C.....GG.CUGA
   NZ_CP025003.1     GCGCACGA-.CGU.UAUCA...............................UC..AC.CAUGGGCGU..GCU...GUCGCUGUUCUCUGUUG.aAAUCGACCUGA...CUAUUGUggCGUCGCU..GAUGUCGGUCAU.....................CGGC.UACU.CGCU.GaAC..GACAGCA.UCGUG...GU.U...U...C.....UG.ACCG
   NZ_CP026993.1     GUGUCAUAC.AGG.UAAAU...............................UA..CC.UAAUG----..-CC...UGAAUUUGGUACAAUUG..CAAUGGUGGUA...UUGGCUG..UUGCAAU..AAU---------uggu............guugu----.-AGC.AGUA.A.CU..GCAAGAU.CAAGA...UU.A...U...C.....UU.CAAA
   NZ_CP031467.1     GCUUUUUCA.CGGcGAACU...............................UC..CC.UGAAUACUG..GCU...GUUCUUUC------UUG..GCCUGAUUUUC...GUGCUGG..UCCCGCU..GUUGCUGCCGAA.....................CGGC.AUCA.UGGG.G.CU..GAUCGAC.AUGGUg.aCG.C...G...C.....AA.GAGG
   NZ_CP031560.1     GCGCAUGA-.CGU.GAUUA...............................UC..AC.UAUGGGCGU..GCU...GUCGCUGUUCUCUAUUG.aAAUCGACCUGA...CUACUGUggCGUCGCU..GAUGUCGGUCAU.....................CGGC.UACU.CGCU.GaAC..GACAGCA.UCGUG...GU.U...U...C.....UG.ACCG
   NZ_CP034035.1     GCGCAUGA-.CGU.GAUUA...............................UC..AC.CAUGGGCGU..GUU...GUCGCUUUUCAAAAUAG.aGAUUGACCUGA...CUAUCGUcgCCUCAUU..GAUGUCGGUGAU.....................UGGU.UACU.CGCU.GaAC..GACAGCA.UCGUG...GU.U...U...C.....UG.ACCG
   NZ_CP034036.1     GCGCAUGA-.CGU.GGUGA...............................UC..AC.CAUGGGGGU..GCU...GUCUCUUUUCAGGAUAG.aGAUCGACCUGA...CUAUUGUggCGUCGCU..AAUGUCGGUCAU.....................CGGC.UACU.CGCU.GaAC..GACAGCA.UCGUA...GU.C...U...C.....CG.ACCG
   NZ_CP035088.1     GCGUAGGCU.C--.-----...............................--..--.CAACACCAC..GCA...GCAGGUGGCGAUGA---..UGCCGCUGCCA...CAGGCGC..UGGUGCU..GUCGCCGCUGUC.....................CGGC.CCGC.UGUC.G.GC..GC-UGAG.CCAGG...C-.-...-...G.....CG.CAAU
   NZ_CP036404.1     GCCCGCCAU.GGA.UGUAU...............................CU..UC.CAGCAGCGG..GUU...GGAAAUGGCG-UCCUCG..G-----CGGC-...--GGCGA..UGGCGCG..GUUUU-------ccccuucgg...cuucgccgg----.UGCC.CAUC.A.UC..GCCUUGC.CCAUU...--.-...U...C.....GG.CCAU
   NZ_CP037864.1     GCGCACAAU.UGG.UACAU...............................UA..CC.CAAAAGCGU..AUU...GAUGCUGGAAAUUAUAG..GGAUGGUCUUG...UUAUCGC..UGGCGCU..GCUAUCGCUUAA.....................CGAU.UACC.UCAC.C.UU..ACCCGCA.-CCGC...UU.A...G...C.....AG.UCCG
   NZ_CP038469.1     GCGCACUGU.GGG.UGUGU...............................UA..CC.UAAAAGCGU..AUU...GAUUCUGGAAACGAUCG..GUAUGGUGUCG...UUAGCGC..UGGCGCU..GCUGUCGCUUAA.....................CGAU.UACC.UCAC.U.UU..ACCCGCG.CCGCU...UA.A...-...C.....AG.CCCG
   NZ_CP038662.1     CUGGCGGAU.U--.-----......................uucuacggc--..--.-GACGCGCU..GGC...GAUGAUCGGUUUUUACG..GCGUGAU----...--CGCCC..UACUGCU..GCUGUCGCUGUU.....................CGGC.AGCC.UGCU.G.GC..GC-----.-CCUA...CG.C...G...Cu...gGA.UCAG
   NZ_CP038853.1     ------UGG.UCU.GGUAA...............................UC..GG.CAGCGGCAU..GUA...UGAGAUCGGCAUCUAUG..GCACGGUGCU-...--GGCGC..UGGUGGU..GCU---------gg................agg----.--UG.UUCC.G.CC..GCCUGAG.CCAUG...UU.U...U...A.....AU.CGGC
   NZ_CP040392.1     GCGCACGA-.CGU.GAUCA...............................UU..AC.CAUGGGCGU..GCU...GUCGCUGUUCCAUAUCG.aGAUUGACCUGA...CCAUCGUggCAUCGUU..GAUGUCGGUUAU.....................CGGC.UACU.CGCU.CaAC..GACAGUA.UCGUG...GU.A...U...C.....GG.ACCG
   NZ_CP041247.1     GCGAUCGCC.UGC.CGUUU...............................UG..CC.GAAAAGCGU..UCU...GCUGGUAGAGGUCAUCG..GGAUUGUGCUG...UUGACCC..UCGCCUG..GCUCUCGCUCAA.....................UCAG.UACC.UGCA.G.CU..GCCGGCG.CCGUU...UU.C...C...A.....GC.CCGA
   NZ_CP041764.1     CUGGCGGAU.A--.-----......................uuuuacggc--..--.-GACGCGCU..GGC...GAUGAUCGGUUUUUACG..GCGUGAU----...--UGCGC..UGGUGCU..GCUGUCGCUGCU.....................CGGC.AGUC.UGCU.G.GC..GCCC---.-UAUG...CG.C...U...C.....GA.CCAG
   NZ_CP042220.2     GCGCACGA-.CGU.GAUUA...............................UC..AC.UAUGGGGGU..GCU...AUCACUGUGUCGGAUUG.aAAUCGAUCUGA...CCACUGUggCCUCGCU..GAUGUCGGUCAU.....................CGGC.UACU.CGCU.GaAU..GACAGCA.UCGUG...GU.U...U...C.....UG.ACCG
   NZ_CP044098.1     GCGCACAAU.UGG.UGUAU...............................UA..CC.CAAAAGCGU..AUU...GAUGCUGGAAAUAAUUG..GGAUGGUUUUG...UUAUCGC..UGGCGCU..GCUAUCGCUUAA.....................CGAU.UACC.UCAC.C.UU..GCCCGCA.CCG-C...UU.A...A...C.....AG.CCCG
   NZ_CP044101.1     GCGCACCAU.UGG.UGUAU...............................UA..CC.GAAAAGCGU..AUU...GAUGCUGGAAAUAAUGG..GGAUGGUUUUG...UUAUCGC..UGGCGCU..GCUGUCGCUUAA.....................CGAU.UACC.UGAC.C.UU..ACCCGCG.CCG-C...UU.A...A...C.....AG.CCCG
   NZ_CP045720.1     ------UGG.UCU.GGUAA...............................UC..GG.CAGCGGCAU..GUA...UGAGAUCGGCAUUUAUG..GCACAGUGCU-...--GGCGC..UGGUGGU..GCU---------gg................aag----.--UG.UUCC.G.CC..GCCUGAG.CCAUG...UU.U...U...A.....AU.CGGC
   NZ_CP045771.1     GCGCACAAU.UGG.UGCAU...............................UA..CC.CAAAAGCGU..AUU...GAUGCUGGAAAUAAUCG..GGAUGGUUUUG...UUAUCGC..UGGCGCU..GCUAUCGCUUAA.....................CGAU.UACC.UCAC.U.UU..ACCCGCA.CCGCU...UG.G...C...A.....GU.CCGU
   NZ_CP045783.1     GCGCACGA-.UGU.GGUGA...............................UC..AC.CAUGGGCGU..ACU...GUCGCUGUUCCAUAUCG.aGAUCGACCUGA...CCAUUGUggCCUCGUU..GAUGUCGGUUAU.....................CGGC.UACU.CGCU.GaAC..GACAGUA.UUGUG...GU.A...U...C.....GG.ACCG
   NZ_CP045845.1     GCGUUCGCU.UGG.AGCAC...............................UG..CC.GAAAAGUGU..UUU...AAUUCUUGAGGGGAUCG..GCAUGGUGGUG...CUGGCGA..CAGCAUG..GCUGUCGCUCAA.....................UCAG.UACA.UCAC.C.UU..GCCAGCC.CUCUU...UG.C...C...A.....GC.CAAC
   NZ_CP046535.1     GCGCACCAU.CGG.CGUCU...............................CG..CC.GAUGGAGGC..GCU...GAUCCUGC------CGC..GCGUGAUCGC-...--CGCGG..UGCUGAU..GAUGCCGCUGCU.....................CGGC.--UU.CUAC.G.CC..GCG--AU.GCUGG...CG.C...U...Ga...uCG.GCGG
   NZ_CP047895.1     GCGCACGAU.CGG.CGUGU...............................CG..CC.GAUGGAGGC..GCU...GGUGCUG-------CCG.cGCGUGCUGGC-...--GGCGG..UGGUGAU..GAUGCCGCUGCU.....................CGGC.UUUU.AUUC.G.UC..G-GUGGU.CGCGA...UC.A...U...C.....GG.-CGG
   NZ_CP048784.1     CUGGCGGAU.U--.-----......................uuuuacggc--..--.-GAUGCGCU..GGC...GAUGAUCGGCUUCUACG..GCGUGAU----...--AGCGC..UGCUGCU..GCUUUCCGUGUU.....................CGGC.A-GC.CUGCuG.GC..CCCU---.-UAUG...CG.C...U...C.....GA.UCAA
   NZ_CP048832.1     GUCGGCGCC.AGG.CCGAU...............................GG..CC.CAGAUGCCG..ACC..aGGGUUUCGAGCUUGUCG..GCCAGA-GCCA...C----GG..CGGUGCC..GGUGCCGGUGGU.....................CGGC.AGGC.UGUC.G.CC..-----GG.CAA--...AG.C...G...C.....GG.CUGG
   NZ_CP049109.1     GCGCACGAU.CGG.CGUGU...............................CG..CC.GAUCGAAGC..GCU...GGUCGUC-------CCG.cGCACGAUGGC-...--GGCUG..UCGUGAU..GAUGCCGCUGCU.....................CGGC.U--U.UUA-.-.--..----UGC.CUCGC...UG.A...U...C.....GC.-GAU
   NZ_CP049608.1     GCGCACGA-.CGU.GGUGA...............................UC..AC.CAUGGGCGU..GCU...GUCGCUGUUCCAUAUUG.aAGUGGACCUGA...CGAUUGUcgCGUCACU..GAUGUCGGUUAU.....................CGGC.UACU.CGCU.GaAC..GACAGCA.UCGUG...GU.U...U...C.....UG.ACCG
   NZ_CP050508.1     GCGUUCGCC.CGC.UGUGU...............................UA..CC.CAAAAGCGU..UCU...GGUGAUAGAGAUCGUCG..GCAUCGUACUG...CUGACGC..UGGCCUG..GCUCUCGCUUAA.....................UCAG.UACC.UGCA.G.CU..GCCGGCG.CCUUU...UG.C...C...A.....GC.CCAA
   NZ_CP051685.1     GCGGCGAAG.UG-.-----cucaggcagaucaccgccuucc.........--..-C.CAAGGCCCU..GCU...GGUG---------AUCG..GCGCGGUGCU-...--GGCGG..UGCUGCU..GGUGCUGCC---.....................CGGC.AUAC.CGUC.G.CU..GCCGGUG.CUGUU...CAuC...G...C.....GG.----
   NZ_CP054058.1     GCGCUCACU.UGG.CGCUC...............................UC..CC.AAAAAGCGU..GCU...UAUCCUCGAAGCCAUUG..GCAUGGUGAUG...UUGGUGC..UGGCCUG..GCUUUCUCUGAA.....................AGA-.-CUA.UGUC.G.CCuuGCCCGCA.CCGUU...CG.C...-...C.....AG.CCCA
   NZ_CP055055.1     GCGCGCGAU.CGG.UAAAU...............................UG..CC.UAAAAGCGU..GUU...GAUACUGGAAUUUAUCG..GAAUGAUGUCG...CUGGCGG..UGGCGCU..GCUGUCGGUAAG.....................CGAC.ACCC.UGUC.G.CU..GCCUGAG.CCAUU...UU.C...U...C.....GG.CCAG
   NZ_CP055292.1     GCGCGCGAU.CGG.UAAAU...............................UG..CC.UAAAGGCGU..GUU...GAUACUGGAAUUUAUCG..GAAUGAUGCUA...CUGGCGG..UGGCGCU..GCUGUCGGUAAG.....................CGAC.UCCC.UGUC.G.CU..GCCUGAG.CCAUU...UU.C...U...C.....GG.CCAG
   NZ_CP059319.1     GCGCACGAU.CGG.CGUGU...............................CG..CC.GAUGGAGGC..GCU...GAUCCUG-------CCG.cGCGUACUGUC-...--GACGG..UGGUGCU..GAUGCCGCUGCU.....................CGGC.U--U.CUAC.G.CG..GCGGUGA.UCGCG...AU.C..aU...C.....GG.-CGG
   NZ_CP061079.1     GCAGCAGG-.CGC.UGUU-...............................CG..GC.CAG-GUGCU..GCU...GGACCCGGAAAUCAUCC..GCCAGCUGUUC...UACGGGC..UGGCGCU..GAU---------ccugg...........ccaug----.-CUC.UAUC.G.GC..CCGCGGG.CCUGU...GG.C...C...G.....GCgCCGG
   NZ_CP062803.1     GCGCGCUGC.CGG.UCCA-...............................GA..CCuUGAAGGCGC..GCU...GGAAGGCGGUGCUGUCG..G--UGAAGCCC...AGGUCGG..CGGCGAU..GG---CGAUGAG.....................CGAG.GCUU.CGCU.G.CU..GGUUAGG.C---G...--.C...A...C.....GAuCGCC
   NZ_CP065640.1     CUGGCGGAU.C--.-----......................uuuuacggc--..--.-GACGCGCU..GGC...GAUGAUCGGUUUCUACG..GCGUGAU----...--UGCGC..UGGUGCU..GCUGUCGCUGUU.....................CGGC.AGCC.UGCU.G.GC..GCCC---.-UAUG...CG.C...U...C.....GA.UCAG
   NZ_CP065670.1     GCGCGUUAU.CGG.CGUGU...............................CG..CC.GAUGGAGGC..GCU...GGUCCUG-------CCG.cGCACCAUCGC-...--GGCGG..UGACGCU..GAUGCCGUUGCU.....................CGGU.UUCU.ACUC.C.UC..GCUG-AU.UGCAA...UG.A...U...C.....GG.-CGG
   NZ_CP065838.1     GCGCACGA-.CGU.GGUGA...............................UC..AC.CAUGGGCGU..GCU...GUCGCUGUUCCAUAUCG.aAAUCGACCUGA...CCAUUGUggCCUCGUU..GAUGUCGGUUAU.....................CGGC.UACU.CGCU.GaAC..GACAGUA.UCGUG...GU.A...U...C.....GG.ACCG
   NZ_CP066038.1     ---------.---.-----...............................UG..UC.GACGAGCGU..CGU...GUUCGUCGUGUUGCUGU..GCCUGCUGAUCuggUAUGCGG..CGCCGCU..GCUGUCGCU---.....................CGGC.CACA.CGGC.G.CC..GUUCGAG.CCCGU...GU.C...G...G.....CC.CGAC
   NZ_CP066075.1     GCUUCUUUA.CGGcGAAUU...............................UC..CC.UGAAUACUG..GCU...GUUCUU------UCUCG..GUCUGAUUUUC...GUGCUGG..UCCCGCU..GCUGCUGCCGAA.....................CGGC.AUCA.UGGG.G.CU..GAUCGAA.CUCGU...GA.C...G...C.....GC.-AAG
   NZ_CP070290.1     GCGCGCGAU.GGG.UAAAU...............................UG..CC.UAAGAGCGU..GUU...GAUACUGGAAUUUAUCG..GAAUGAUGCUG...CUGGCGG..CGGUGCU..GUUAUCGGUAAG.....................CCAC.UACC.UUAC.G.UU..UCCGGCA.CCGUU...UG.C...U...A.....CG.CCAG
   NZ_CP071320.1     GCGCACGA-.CGU.GAUCA...............................UC..AC.GCUGGGCGU..GCU...GUCGCUGUUCCACAUCG.aGAUUGACCUGA...CCAUCGUcgCGUCCCU..GAUGUCGGUUAU.....................CGGU.UACU.CGCU.GaAC..GACAGCA.UCGUG...GU.C...U...C.....CG.ACCG
   NZ_CP077080.1     ---------.--AgCGCGU...............................CGguUC.CAACACCAC..GCA...ACAGGUGGCAAUGAUGC..CGCUGCCGCA-...--GGCGC..UGGUGCU..GUCGCCGCUGUC.....................CGGC.CCGC.UGUC.G.GC..GCU-GAG.CCAGG...C-.-...-...G.....CG.CAAC
   NZ_CP077262.1     GCGCACAAU.UGG.UGUAU...............................UA..CC.CAAAAGUGU..AUU...GAUGCUGGAAAUAAUAG..GGAUGGUUUUG...UUAUCGC..UGGCGCU..GCUAUCGCUUAA.....................CGAU.UAUC.UCAC.C.UU..ACCCGCA.CCG-C...UU.A...G...C.....AG.CCCG
   NZ_CP081864.1     GCGCACGA-.CGU.GAUCA...............................UC..AC.CAUGGGGGU..GUU...CUCGCUGUUUCAAAUCG.aGAUCGAUUUGA...CCAUCGUcgCAUCGCU..GAUGUCGGUUAU.....................CGGU.UACU.CGUU.GaAC..GACAGCA.UCGUG...GU.A...U...C.....UG.ACCG
   NZ_CP082787.1     CUGGCGGAU.U--.-----......................uuuuacggc--..--.-GACGCGCU..GGC...GAUGAUCGGUUUUUACG..GCGUGAU----...--AGCCC..UGCUGCU..GCUGUCGCUGUU.....................CGGC.AGCC.UGCU.G.GC..GCCU---.-UAUG...CG.C...U...C.....GA.UCAG
   NZ_CP084521.1     GCGCACGA-.CGU.GGUGA...............................UC..AC.GCUCGGGGU..GCU...GUCGUUGUUCCAUAUCG.aGAUCGAUCUGA...CCAUCGUggCGUCGCU..GAUGUCGGUUAU.....................CGGC.UACU.CGCU.UaAC..GACAGUA.UCGUG...GU.C...U...C.....UG.ACCG
   NZ_CP084874.1     GCGCACGA-.CGU.GGUGA...............................UC..AC.CAUGGGCGU..GCU...GUCGCUGUUCCAUAUCG.aGAUCGACCUGA...CCAUUGUggCCUCGUU..GAUGUCGGUUAU.....................CGGC.UACU.CGCU.GaAC..GACAGUA.UCGUG...GU.A...U...C.....GG.ACCG
   NZ_CP086594.1     GCGCACGAU.CGG.CGUCU...............................CG..CC.GAUGGAGGC..GCU...GGUGCUG-------CCG.cGGACGAUCGC-...--GGCGA..UCGUGCU..GAUGCCACUGCU.....................UGGC.U-UU.UACGcC.UC..GCU--GA.UCGCG..aUC.A...U...C.....GG.-CGG
   NZ_CP087880.1     GCGUUCGCU.CGG.GGCGU...............................UA..CC.CAAAAGCGU..UUU...GAUUCUGGAAGCAAUAG..GCAUGGUGUUG...UUGGGG-..-GCCGCCugGCUCUCGCUCAA.....................CGGC.UAUG.UCGC.A.UU..GCCUGCG.CCUGU...CG.C...-...C.....AG.CCAG
   NZ_CP090968.1     GCGCACGA-.CGU.GGUGA...............................UC..AC.GCUCGGGGU..GCU...GUCGUUGUUCCACAUCG.aGAUCGAUCUGA...CCAUCGUggCAUCGCU..GAUGUCGGUUAU.....................CGGC.UACU.CGCU.CaAC..GACAGUA.UCGUG...GU.C...U...C.....UG.ACCG
   NZ_CP093334.1     GCGAUCGCC.UGC.CGUUU...............................UG..CC.AAAAAGCGU..UCU...GCUGGUAGAGAUCAUCG..GGAUUGUGCUG...UUGACCC..UCGCCUG..GCUCUCGCUCAA.....................UCAG.UACC.UGCA.G.CU..GCCGGCG.CCGUU...UU.C...C...A.....GC.CCGA
   NZ_CP096201.1     GCGUUCGCU.UGG.AGCAC...............................UA..CC.CAAAAGCGU..UUU...AAUUCUGGAGACCAUUG..GCAUGGUUGUA...CUGGCGG..UGGCGUG..GCUAUCGCUCAA.....................UCAG.UACA.UCAC.A.CU..GCCCGCG.CCGUU...UG.C...-...C.....AG.CCAA
   NZ_CP100494.1     GCGCACGA-.CGU.GGUGA...............................UC..AC.CAUGGGCGU..ACU...GUCGCUGUUCCAUAUUG.aAGUGGACCUGA...CGAUUGUcgCGUCGCU..GAUGUCGGUUAU.....................CGGC.UACU.CGCU.GaAC..GACAGCA.UCGUG...GU.A...U...C.....UG.ACCG
   NZ_HG322949.1     GUCGGCUGC.AAG.CCGAU...............................GG..CC.CAGAUGCCG..ACCaggGUUUCCAG--CUUGUCG..GCCAGC-GCCA...C----GG..CGGUGCC..GGUGUUGGUGGU.....................CGGC.AAGC.UGUC.G.CC..-----GG.CAA--...AG.C...G...C.....GG.CUGG
   NZ_LR134201.1     GCGCACGA-.CGU.GGUGA...............................UC..AC.CAUGGGCGU..GCU...GUCGCUGUUCCAUAUCG.aAAUUGACCUGA...CCAUCGUcgCGUCGUU..GAUGUCGGUUAU.....................CGGC.UACU.CGCU.GaAC..GACAGCA.UCGUG...GU.U...U...C.....GG.ACCG
   NZ_LR134485.1     GCGCACAGU.GGG.CGUGU...............................UA..CC.CAAAAGCGU..AUU...GAUUCUGGAAAUCAUCG..GGAUGGUUUUG...UUAUCGC..UGGCGCU..GCUGUCGCUUAA.....................CGAU.UAUC.UCAC.C.UU..ACCCGCA.CCG-C...UG.A...A...C.....GGgCCAU
   NZ_LR134494.1     CUGGCGGAU.U--.-----......................uuuuacggu--..--.-GAUGCGCU..GGC...GAUGAUUGGUUUCUACG..GCGUGAU----...--AGCGC..UGCUGCU..GCUUUCCCUGUU.....................CGGC.A-GC.CUGCuG.GC..GCCU---.-UAUG...CG.C...U...C.....GA.UCAA
   NZ_LT906479.1     CUGGCGGAU.U--.-----......................uuuuacggc--..--.-GACGCGCU..GGC...GAUGAUUGGCUUUUACG..GCGUGAU----...--CGCCC..UGCUGCU..GCUGUCGCUGUU.....................CGGC.AGCC.-UGCuG.GC..GCCC---.-UAUG...CG.C...U...G.....GA.UCAG


   Structure         ((((((.....((.((..................................))..))......))))..))........((((......(((..(((....(((......(((((..(((((.......((((..........................))))......)))).).))..)))..)).).......)).).......).....)).))))


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ybjC-nfsA-rimK-ybjN



Position: 40-129, Conformation: #0







97% 90% 75% 50% Nucleotide present N N N Nucleotide identify E < 0.1 Base-pair covariation E < 0.05 Helix-level covariation 97% 90% 75%

Y R Y G Y C R R R Y R Y Y G Y U Y G G Y G Y R C G Y R Y G Y U G U Y Y G Y Y R Y Y R Y G R C Y 5'