yaaY-ribF-ileS-lspA-fkpB-ispH



Position: 4220-4349, Conformation: #0







DMS reactivity > 1.0 0.0 0.4 0.7 G/U/No data
Position: 0 (position.label in template: 0.5')5' Position: 1 (position.label in template: 1.A) Reactivity: nanA Position: 2 (position.label in template: 2.G) Reactivity: nanG Position: 3 (position.label in template: 3.U) Reactivity: nanU Position: 4 (position.label in template: 4.U) Reactivity: nanU Position: 5 (position.label in template: 5.U) Reactivity: nanU Position: 6 (position.label in template: 6.C) Reactivity: nanC Position: 7 (position.label in template: 7.C) Reactivity: nanC Position: 8 (position.label in template: 8.U) Reactivity: nanU Position: 9 (position.label in template: 9.U) Reactivity: nanU Position: 10 (position.label in template: 10.G) Reactivity: nanG Position: 11 (position.label in template: 11.C) Reactivity: nanC Position: 12 (position.label in template: 12.C) Reactivity: nanC Position: 13 (position.label in template: 13.G) Reactivity: nanG Position: 14 (position.label in template: 14.A) Reactivity: nanA Position: 15 (position.label in template: 15.U) Reactivity: nanU Position: 16 (position.label in template: 16.A) Reactivity: nanA Position: 17 (position.label in template: 17.G) Reactivity: nanG Position: 18 (position.label in template: 18.C) Reactivity: nanC Position: 19 (position.label in template: 19.G) Reactivity: nanG Position: 20 (position.label in template: 20.G) Reactivity: nanG Position: 21 (position.label in template: 21.C) Reactivity: nanC Position: 22 (position.label in template: 22.G) Reactivity: nanG Position: 23 (position.label in template: 23.G) Reactivity: nanG Position: 24 (position.label in template: 24.C) Reactivity: nanC Position: 25 (position.label in template: 25.U) Reactivity: nanU Position: 26 (position.label in template: 26.G) Reactivity: nanG Position: 27 (position.label in template: 27.G) Reactivity: nanG Position: 28 (position.label in template: 28.C) Reactivity: nanC Position: 29 (position.label in template: 29.A) Reactivity: nanA Position: 30 (position.label in template: 30.G) Reactivity: nanG Position: 31 (position.label in template: 31.C) Reactivity: nanC Position: 32 (position.label in template: 32.G) Reactivity: nanG Position: 33 (position.label in template: 33.U) Reactivity: nanU Position: 34 (position.label in template: 34.U) Reactivity: nanU Position: 35 (position.label in template: 35.G) Reactivity: nanG Position: 36 (position.label in template: 36.G) Reactivity: nanG Position: 37 (position.label in template: 37.U) Reactivity: nanU Position: 38 (position.label in template: 38.U) Reactivity: nanU Position: 39 (position.label in template: 39.C) Reactivity: 0C Position: 40 (position.label in template: 40.U) Reactivity: nanU Position: 41 (position.label in template: 41.U) Reactivity: nanU Position: 42 (position.label in template: 42.U) Reactivity: nanU Position: 43 (position.label in template: 43.G) Reactivity: nanG Position: 44 (position.label in template: 44.C) Reactivity: 0C Position: 45 (position.label in template: 45.C) Reactivity: 0C Position: 46 (position.label in template: 46.G) Reactivity: nanG Position: 47 (position.label in template: 47.G) Reactivity: nanG Position: 48 (position.label in template: 48.U) Reactivity: nanU Position: 49 (position.label in template: 49.A) Reactivity: 0A Position: 50 (position.label in template: 50.U) Reactivity: nanU Position: 51 (position.label in template: 51.U) Reactivity: nanU Position: 52 (position.label in template: 52.G) Reactivity: nanG Position: 53 (position.label in template: 53.C) Reactivity: 0C Position: 54 (position.label in template: 54.G) Reactivity: nanG Position: 55 (position.label in template: 55.A) Reactivity: 1A Position: 56 (position.label in template: 56.U) Reactivity: nanU Position: 57 (position.label in template: 57.U) Reactivity: nanU Position: 58 (position.label in template: 58.G) Reactivity: nanG Position: 59 (position.label in template: 59.G) Reactivity: nanG Position: 60 (position.label in template: 60.U) Reactivity: nanU Position: 61 (position.label in template: 61.A) Reactivity: 0.5A Position: 62 (position.label in template: 62.U) Reactivity: nanU Position: 63 (position.label in template: 63.U) Reactivity: nanU Position: 64 (position.label in template: 64.A) Reactivity: 1A Position: 65 (position.label in template: 65.G) Reactivity: nanG Position: 66 (position.label in template: 66.C) Reactivity: 0C Position: 67 (position.label in template: 67.G) Reactivity: nanG Position: 68 (position.label in template: 68.U) Reactivity: nanU Position: 69 (position.label in template: 69.G) Reactivity: nanG Position: 70 (position.label in template: 70.A) Reactivity: 0A Position: 71 (position.label in template: 71.U) Reactivity: nanU Position: 72 (position.label in template: 72.C) Reactivity: 0C Position: 73 (position.label in template: 73.C) Reactivity: 0C Position: 74 (position.label in template: 74.U) Reactivity: nanU Position: 75 (position.label in template: 75.G) Reactivity: nanG Position: 76 (position.label in template: 76.G) Reactivity: nanG Position: 77 (position.label in template: 77.C) Reactivity: 0C Position: 78 (position.label in template: 78.A) Reactivity: 0A Position: 79 (position.label in template: 79.G) Reactivity: nanG Position: 80 (position.label in template: 80.U) Reactivity: nanU Position: 81 (position.label in template: 81.G) Reactivity: nanG Position: 82 (position.label in template: 82.A) Reactivity: 0A Position: 83 (position.label in template: 83.U) Reactivity: nanU Position: 84 (position.label in template: 84.G) Reactivity: nanG Position: 85 (position.label in template: 85.A) Reactivity: 1A Position: 86 (position.label in template: 86.U) Reactivity: nanU Position: 87 (position.label in template: 87.G) Reactivity: nanG Position: 88 (position.label in template: 88.U) Reactivity: nanU Position: 89 (position.label in template: 89.A) Reactivity: 0.5A Position: 90 (position.label in template: 90.U) Reactivity: nanU Position: 91 (position.label in template: 91.C) Reactivity: 0C Position: 92 (position.label in template: 92.G) Reactivity: nanG Position: 93 (position.label in template: 93.C) Reactivity: 0C Position: 94 (position.label in template: 94.U) Reactivity: nanU Position: 95 (position.label in template: 95.C) Reactivity: 0C Position: 96 (position.label in template: 96.G) Reactivity: nanG Position: 97 (position.label in template: 97.A) Reactivity: 0.5A Position: 98 (position.label in template: 98.A) Reactivity: 0.5A Position: 99 (position.label in template: 99.G) Reactivity: nanG Position: 100 (position.label in template: 100.G) Reactivity: nanG Position: 101 (position.label in template: 101.C) Reactivity: 0.5C Position: 102 (position.label in template: 102.C) Reactivity: 0C Position: 103 (position.label in template: 103.A) Reactivity: 0A Position: 104 (position.label in template: 104.C) Reactivity: 0C Position: 105 (position.label in template: 105.G) Reactivity: nanG Position: 106 (position.label in template: 106.C) Reactivity: 0C Position: 107 (position.label in template: 107.A) Reactivity: 0.5A Position: 108 (position.label in template: 108.G) Reactivity: nanG Position: 109 (position.label in template: 109.A) Reactivity: 0A Position: 110 (position.label in template: 110.A) Reactivity: 0.5A Position: 111 (position.label in template: 111.G) Reactivity: nanG Position: 112 (position.label in template: 112.C) Reactivity: 0C Position: 113 (position.label in template: 113.U) Reactivity: nanU Position: 114 (position.label in template: 114.A) Reactivity: 0A Position: 115 (position.label in template: 115.A) Reactivity: 0A Position: 116 (position.label in template: 116.A) Reactivity: 0.5A Position: 117 (position.label in template: 117.C) Reactivity: 0C Position: 118 (position.label in template: 118.A) Reactivity: 1A Position: 119 (position.label in template: 119.A) Reactivity: 0A Position: 120 (position.label in template: 120.U) Reactivity: nanU Position: 121 (position.label in template: 121.A) Reactivity: 1A Position: 122 (position.label in template: 122.U) Reactivity: nanU Position: 123 (position.label in template: 123.C) Reactivity: 0.5C Position: 124 (position.label in template: 124.G) Reactivity: nanG Position: 125 (position.label in template: 125.C) Reactivity: 0C Position: 126 (position.label in template: 126.U) Reactivity: nanU Position: 127 (position.label in template: 127.U) Reactivity: nanU Position: 128 (position.label in template: 128.A) Reactivity: 0.5A Position: 129 (position.label in template: 129.C) Reactivity: 0C Position: 130 (position.label in template: 130.G) Reactivity: nanG Position: 131 (position.label in template: 131.C) Reactivity: 0C Position: 132 (position.label in template: 132.G) Reactivity: nanG Position: 133 (position.label in template: 133.C) Reactivity: 0C Position: 134 (position.label in template: 134.U) Reactivity: nanU Position: 135 (position.label in template: 135.G) Reactivity: nanG Position: 136 (position.label in template: 136.A) Reactivity: 1A Position: 137 (position.label in template: 137.U) Reactivity: nanU Position: 138 (position.label in template: 138.U) Reactivity: nanU Position: 139 (position.label in template: 139.A) Reactivity: nanA Position: 140 (position.label in template: 140.U) Reactivity: nanU Position: 141 (position.label in template: 141.U) Reactivity: nanU Position: 142 (position.label in template: 142.G) Reactivity: nanG Position: 143 (position.label in template: 143.G) Reactivity: nanG Position: 144 (position.label in template: 144.C) Reactivity: nanC Position: 145 (position.label in template: 145.G) Reactivity: nanG Position: 146 (position.label in template: 146.G) Reactivity: nanG Position: 147 (position.label in template: 147.C) Reactivity: nanC Position: 148 (position.label in template: 148.G) Reactivity: nanG Position: 149 (position.label in template: 149.C) Reactivity: nanC Position: 150 (position.label in template: 150.G) Reactivity: nanG Position: 151 (position.label in template: 151.C) Reactivity: nanC Position: 152 (position.label in template: 152.U) Reactivity: nanU Position: 153 (position.label in template: 153.G) Reactivity: nanG Position: 154 (position.label in template: 154.G) Reactivity: nanG Position: 155 (position.label in template: 155.G) Reactivity: nanG Position: 156 (position.label in template: 156.C) Reactivity: nanC Position: 157 (position.label in template: 157.A) Reactivity: nanA Position: 158 (position.label in template: 158.A) Reactivity: nanA Position: 159 (position.label in template: 159.C) Reactivity: nanC Position: 160 (position.label in template: 160.C) Reactivity: nanC Position: 161 (position.label in template: 161.U) Reactivity: nanU Position: 162 (position.label in template: 162.G) Reactivity: nanG Position: 163 (position.label in template: 163.U) Reactivity: nanU Position: 164 (position.label in template: 164.U) Reactivity: nanU Position: 165 (position.label in template: 165.C) Reactivity: nanC Position: 166 (position.label in template: 166.G) Reactivity: nanG Position: 167 (position.label in template: 167.A) Reactivity: nanA Position: 168 (position.label in template: 168.C) Reactivity: nanC Position: 169 (position.label in template: 169.C) Reactivity: nanC Position: 170 (position.label in template: 170.G) Reactivity: nanG Position: 171 (position.label in template: 171.3')3' 10 20 30 50 100 150


yaaY-ribF-ileS-lspA-fkpB-ispH



Position: 4220-4349, Conformation: #0







Retained alignments:


   NC_002977.6       AGC.UUC....CU.GAG.C.GA...G....GCCGG....CG.GUU...G..G..C.AG..CGCUGG...UUUU.................................................................................UCAU...CG-C..C......C..U..G.-....--......U...C..gGCCA..GC....G..CC..A.C.G.......CU.G.CU......GA...U...-.--..-.-...-...-...--.-..-.-.....................................caccuacuggc................ucaagcacaug-..-.-..-...-..---.........GAC..C.....GG.CG..G..A.....AA...A..C..C..U......G......G.........G...A...A.......gCC......G.C....C..GCC....U..G..G.G...C...C..CUG...........GUGCUGGG................................................CGGUGCCGUCGGC
   NC_003910.7       AGC.UUU....UU.AGC.U.GA...C....CAAGG....UG.GUU...G..G..C.AA..CGCUGG...UUUU.................................................................................UUAC...UGGG..A......U..U..G.C....CA......G...U...AUAG..CU....A..GU..A.U.U.......GU.A.UU......UC...U...C.GU..U.U...G...G...AU.G..G.C...........................................................................A..A.A..A...A..CAC.........CUA..A.....AC.AG..C..A.....AC...G..U..U..U......A......U.........U...A...A........GU......A.U....U..GCU....U..U..U.G...C...U..UUG...........AUUUUAAG................................................CGGCGCCGUAGGU
   NC_004347.2       AGC.UUU....UU.GAG.U.GA...A....GCCGG....UG.GCU...G..G..C.AA..CGUUGG...UUGU.................................................................................UUAC...UAUC..G......U..C..G.C....AG......U...U...GGAU..UU....A..GC..U.C.C.......UU.G.CU......GA...C...U.GU..U.U...G...G...UU.G..-.-...........................................................................-..C.G..U...A..AGC.........AGU..C.....GG.CA..U..C.....AU...U..A..U..U......G......A.........AguuA...A........AU......C.U....G..GCC....U..A..C.A...C...C..UUA...........GUGAUUGG................................................CGGGGCCUUAGGA
   NC_004578.1       AGU.UUU....CU.GGC.G.GA...C....GGUGC....CG.GUU...G..G..C.AG..CGCUGG...CUGU.................................................................................UUGC...CCUG..A......U..C..G.C....GG......U...C...GUGG..UC....A..GU..G.C.G.......GU.G.CU......GG...U...G.GU..C.U...G...G...CU.C..A.A...........................................................................G..C.G..U...C..UGG.........--G..U.....CG.CG..A..U.....GA...U..A.cC..U.....gG......C.........U...G...G........CC......A.U....U..GCG....C..U..G.G...C...G..CUG...........GUACUGGG................................................CGGCGCGCUGGGC
   NC_004603.1       AGC.UUU....UU.GAG.C.GA...U....CAAGC....GG.GUU...G..G..C.AA..CGUUGG...UUGU.................................................................................UUAC...CGGU..A......U..C..G.C....GU......U...U...GUAG..UC....A..CA..G.G.U.......CU.U.UU......GA...C...U.UA..U.U...G...G...AU.G..A.G...........................................................................U..A.A..G...C..UUC.........CUG..C.....AA.AA..G..A.....AA...A..G..U..G......G......A.........A...C...A........AC......A.U....U..GCU....U..A..C.G...C...C..AUG...........AUUAUUGG................................................UGGUGCCGUUGGC
   NC_004757.1       AGU.UUC....CU.GAG.U.GA...U....GCUUC....CG.GGU...G..G..C.AG..CGAUGG...UUCU.................................................................................UGAG...UACC..A......U..C..G.C....UG......U...U...CUCG..UA....U..CU..G.U.C.......CU.G.AU......UG...U...U.UA..U.C...U...G...CU.G..U.A...........................................................................U..A.-..-...-..AGA.........AUA..C.....GG.CC..A..A.....CC...G..G..C..U......G......U.........U...C...U........GC......U.U....C..GCG....C..U..G.A...G...C..CUU...........AUUCUGGG................................................AGGGGCACUGGGC
   NC_005126.1       AGU.UUC....CU.UGC.A.GA...G....AAAGA....UG.GUU...G..G..C.AG..CGUUGG...UUCU.................................................................................UUGC...AUUC..A......U..U..G.C....CG......U...U...GCUA..UU....U..CA..G.U.U.......GU.C.CU......GA...U...G.GU..G.A...U...G...AU.G..U.A...........................................................................U..C.G..U...G..CCA.........GCG..C.....AA.AG..A..A.....GA...A..A..C..U......G......A.........G...U...A........AU......A.U....C..GCU....U..A..U.G...C...C..CUG...........AUUAUUGG................................................UGGAGCACUGGGU
   NC_005966.1       AGU.UUU....CU.CUC.C.GA...C....GCUGG....UG.GCU...G..G..C.AG..CAUUAU...CUAU.................................................................................UUAC...UGGG..C......U..G..G.C....GG......G...C...AUUG..UU....U..CG..A.U.C.......AU.U.UU......UA...U...U.UU..C.U...G...G...CU.C..A.U...........................................................................G..C.G..U...A..UGC.........CUA..A.....AA.AU..G..C.....AA...U..G..A..U......U......U.........U...A...C........CU......G.C....G..GCC....A..U..U.G...C...C..CUG...........AUUUUGGG................................................UGGUGCGCUGGGU
   NC_006300.1       AGU.UUU....CU.GGC.U.GA...A....CACGG....CG.GUU...G..G..C.AA..AAAUAU...UUCU.................................................................................UUAU...UGUG..C......U..G..G.C....GC......Ug.gC...GGUU..UC....C..GC..C.G.U.......GU.U.GG......UG...C...A.--..U.U...U...G...CU.G..C.G...........................................................................A..A.A..A...A..ACA.........GCG..C.....AC.GG..C..A.....GA...A..G..U..U......G......C.........A...G...A........AU......U.C....C..GCU....U..A..C.G...C...C..CUG...........AUUAUCGG................................................CGGGGCGCUUGCC
   NC_006512.1       AGC.UUU....UU.AAG.U.GA...C....GGUGG....CG.GUU...G..G..C.AA..CGUUGG...UUCU.................................................................................UUAC...UGCC..A......U..U..G.C....UA......U...U...GCCA..UC....A..GU..G.U.G.......GU.G.CU......GC...U...U.AU..C.U...G...G...AU.G..C.G...........................................................................U..C.G..C...A..ACC.........CGG..U.....GG.GU..U..U.....AU...G..G..C..G......C......C.........A...G...A........AU......U.U....A..GCC....U..U..U.U...C...U..CUG...........AUUAUGGC................................................CGGGGCUAUUGGC
   NC_006513.1       AGC.UUU....CU.UGC.C.GA...C....CAUUC....GG.GCU...G..G..C.AG..CGCUGG...UUCU.................................................................................UCAU...UGCA..C......U..C..G.C....GC......U...C...GUCG..UC....U..GC..G.G.C.......UG.G.CU......GC...U...C.GC..G.A...U...G...CU.-..-.-...........................................................................G..C.G..C...C..AUC.........ACC..-.....AG.CA..C..G.....AA...C..G..U..G......C......A.........C...U...G........CC.....gC.U....G..GCG....U..U..C.A...G...C..CUC...........AUCAUCGG................................................CGGAGCGGUCGGC
   NC_007204.1       AGC.UUU....UU.GGC.A.GA...U....GCCGG....UG.GAU...G..G..C.AA..AAGUGG...UUUU.................................................................................UUGC...AG-G..A......C..U..G.G....CGc...uaU...U...GAUG..UC....G..CU..A.U.U.......CU.-.-U......GA...U...-.--..-.-...-...-...--.-..-.-.....................................aggcuaucuagu..............uaaagcgccucg-..-.-..-...-..---.........---..-.....AC.AA..G..C.....CA...A..G..C..U......G......U.........U...A...U........CA......C.U....C..GGU....U..U..A.G...C...A..UUG...........GUGUUAGG................................................CGGUGCUGUGGGU
   NC_007484.1       AGU.UUC....CU.GGC.C.GA...U....GCCGG....UG.GUU...G..G..C.AG..CGGUGG...UUUU.................................................................................UUGU...AGGG..C......U..G..G.C....GC......U...C...ACUG..UA....A..GC..G.U.U.......GG.A.CU......AG...U...U.GU..U.U...G...G...UU.-..-.-.....................................auac.............................cgguuA..G.G..C...A..CCC.........---..-.....-A.UG..C..-.....UC...U..G..U..G......G......G.........A...A...G........GC......A.U....G..GCU....G..U..G.G...C...C..UUG...........AUCCUUGG................................................CGGAGCCUUGGGU
   NC_007510.1       GGC.UUC....CU.GUC.G.AC...C....GCAGG....CG.GCU...G..G..C.AG..CGCUGG...GCGU.................................................................................UCAC...CGCG..C......U..C..G.G....CA......-...U...CGCC..GC....GacGC..U.C.-.......GU.G.AU......CU...G...C.UU..C.C...U...G...CU.G..A.A...........................................................................G..C.G..U...-..-CA.........CGG..-.....CC.AG..C..A.....GC...G..G..C..U......G......U.........U...C...A........GC......C.U....G..UCG....C..U..C.G...C...C..AUG...........AUCCUCGG................................................CGGCGCACUCGGC
   NC_007614.1       AGC.UUC....CU.GAG.U.GA...U....GCGGG....AG.GGU...G..G..C.AG..CGCUGG...UUUU.................................................................................UCAC...GACC..G......U..U..U.C....--......-...C...GCAG..GC....G..CU..U.C.U.......GU.A.UU......AA...U...C.GU..U.U...U...U...UU.G..C.U...........................................................................G..U.A..C...A..GGC.........AUG..C.....GG.CA..G..A.....UA...A..A..C..U......U......U.........U...C...U........GC......A.U....C..GCU....U..U..G.A...G...C..CUG...........AUCCUCGG................................................AGGUGCCCUGGGG
   NC_007645.1       AGU.UUU....CU.GGC.G.GA...U....GCGUC....AG.GGU...G..G..C.AG..CGCUGG...UUCU.................................................................................UUAU...UAUU..C......U..G..G.C....UG......C...U...GUAG..UG....A..GU..G.U.G.......GU.G.UU......GG...U...G.CU..U.U...G...G...CU.G..G.U...........................................................................U..C.G..C...U..UAA.........--C..U.....CG.UG..-..A.....GG...A..G..C..G......U......U.........G...-...-........-G......A.U....G..GCA....U..G..C.G...C...G..CUCagu.....uugGUUCUGGG................................................GGGGGCUUUAGGC
   NC_007712.1       AGU.UUU....CU.GGC.G.GA...C....AUAGG....AG.GAU...G..G..C.AA..CGCUGG...GCGU.................................................................................UUUC...CGCG..A......U..U..G.-....CA......G...U...GGUG..AU...cG..CG..G.U.G.......GU.G.UU......GC...U...G.GU..C.A...U...G...AU.G..U.A...........................................................................U..C.G..U...U..CGG.........ACA..A.....GC.GU..G..C.....CA...G..G..U..U......G......U.........C...U...A........AC......G.C....C..GCC....U..A..C.G...C...G..AUG...........AUUAUCGG................................................CGGCGCGCUGGGC
   NC_007908.1       CGU.-UU....CU.GGC.C.GG...U....GCAUC....CG.GUU...G..G..C.AG..CGCUGG...UUCU.................................................................................UCAC...CGUC..A......U..C..G.Gc..gUG......C...U...GGCA..GC....G.gGC..U.U.G.......AU.U.CU......--...-...G.UG..G.C...U...A...CU.C..A.A...........................................................................G..U.C..G...C..---.........ACG..C.....CG.GG..C..A.....AA...G..A..C..U......G......U.........U...U...G........CC......U.U....U..UCC....A..U..G.G...C...C..UGC...........AUUUUGGG................................................CGGCGCCAUUGGC
   NC_007912.1       AGU.AUG....UU.UGC.C.GA...U....UGGGG....CG.GUG...C..G..C.AG..CGCUGG...G---gcuugggugcgu........................uggcggcagggguga...........................gugUUGC...---U..A......U..U..A.C....UA......U...U...UGGA..UU....G..CC..A.A.G.......CU.-.--......--...-...-.--..-.-...A...G...AU.A..A.A.....................................a....................................g-..-.C..-...-..---.........---..C.....GG.UG..G..A.....CA...G..A..A..G......C......-.........-...-...-........-U......U.U....G..GCU....U..U..G.G...C...G..CUG...........GUGCUGGG................................................CGGUGCAAUAGGC
   NC_007951.1       AGC.UUC....CU.CGC.G.AU...G....GCGGG....CG.GCU...G..G..C.AA..CGCUGG...GCGU.................................................................................UCAC...C-GC..G......C..U..C.G....GC......G...U...GGUG..GC....C..GC..G.C.U.......G-.G.UG......AU...C...U.GC..U.A...-...-...--.-..-.-.....................................ucu...............................gcucA..A.G..C...G..CCA.........CGG..C.....-G.GC..C..A.....GA...A..A..A..U......G......U.........U...C...U........GC......A.C....G..GCG....C..U..C.G...C...G..CUG...........AUUCUCGG................................................CGGCGCGCUCGGC
   NC_007954.1       AGC.UUU....UU.AAG.C.GA...U....GCGGG....UG.GUU...G..G..C.AA..CGAUGG...UUUU.................................................................................UCAC...AGUU..A......U..A..G.C....CU......U...A...GGUU..UU....A..GU..A.C.C.......UU.G.CU......AA...C...C.UU..G.U...G...G...CU.-..-.-...........................................................................G..C.G..U...A..AGC.........AGU..C....aCA.UA..C..Cu...uGU...G..G..C..G......U......A.........C...U...A........AU......U.U....A..GCC....U..U..U.A...C...A..CUG...........GUUAUUGG................................................UGGUGCAUUGGGG
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   NZ_LT906451.1     AGU.UUU....CU.UAG.C.GG...A....ACAGG....UG.ACU...G..G..C.AU..CGAUGG...UUUU.................................................................................UUGC...AGGC..U......U..U..A.G....CG......U...U...CUAA..UG....A..GU..U.U.A.......UU.U.UU......AA...U...C.AU..U.U...G...G...AU.G..C.U...........................................................................U..C.G..U...U..UGC.........CUG..U.....UA.GA..G..C.....AA...A..A..U..U......G......C.........A...A...U........--......-.-....-..-CU....U..U..U.G...C...A..CUUagu.....uugAUACUCGG................................................AGGCGCGCUAGGU
   NZ_LT906463.1     AGU.UUU....UU.AGC.C.GA...U....CAUAA....UG.GUU...G..G..C.AA..CAAUAU...UUCU.................................................................................UUGU...U-CU..A......-..-..-.-....--......C...U...GGCU..GU....A..AU..A.A.UuucauugAU.G.CU......GG...U...G.UA..-.-...-...-...--.-..-.-.....................................uuuccuga......................aaaagaac-..-.-..-...-..--A.........GCA..U.....UG.CU..C..A.....GC...G..A..C..U......A......C.........A...A...A........AU......A.G....C..GCC....U..A..U.G...C...C..CUG...........AUUAUCGG................................................AGGUGCAUUAGCC
   NZ_LT906479.1     AGC.UUC....CU.GGC.C.GA...U....CACGG....CG.GCU...G..G..C.AG..CGCUGG...UUCU.................................................................................UCGC...CGGC..A......U..C..G.C....CG......U...C...GCCA..UC....G..UG..G.C.G.......GU.G.CU......GC...U...G.GU..G.A...U...G...AU.G..U.A...........................................................................C..C.G..C...A..GCA.........GCG..C.....GC.AG..C..A.....GA...A..G..C..U......G......A.........A...C...A........AC......A.U....C..GCC....U..A..U.G...C...U..UUC...........AUCAUCGG................................................CGGCGCGCUCGGC
   NZ_LT906482.1     AGU.CUU....UU.UGC.G.AA...U....GGUGG....AG.GCU...G..G..C.AG..CGCUAC...UUUU.................................................................................UUAU...CGGA..A......U..C..G.C....GG......U...A...-GUG..GU....C..UC..G.A.U......uUU.U.CU......GA...U...C.AA..G.C...U...G...AU.-..-.-...........................................................................C..C.U..U...G..AAA.........A-U..C.....GU.CA..U..A.....AA...G..G..A..G......A......A.........G...C...-........-C......A.U....C..GCU....U..A..C.A...G...U..CUU...........AUCCUCGG................................................UGGCGCCAUGGGC
   NZ_LT907988.1     AGC.UUC....CU.CAG.C.AC...G....GCGGG....CG.GCU...G..G..C.AG..CGCUGG...CUGU.................................................................................UCAC...-GGC..G......C..U..G.G....GC......G...U...GGGC..GC....G..GC..G.G.U.......CU.U.CA......UC...C...U.GU..G.G..cU...G...CU.G..C.A...........................................................................U..C.G..C...A..A--.........CCG..C.....GG.C-..C..A.....GU...U..C..C..G......C......U.........U...C...U........GC......C.U....G..GCG....C..U..C.U...C...C..AUG...........AUCCUGGG................................................CGGCGCGCUGGGC
   NZ_OU015430.1     AGC.UUC....CU.CAG.C.GA...C....GCCGG....CG.GCU...G..G..C.AG..AAGUAC...UUCU.................................................................................UCGU...-GGU..G......C..U..G.G...cGG......C...C...GCCA..UC....U..GC..G.G.C.......UU.G.CU......GG...G...C.UA..C.U...G...G...CU.G..U.C...........................................................................G..-.-..-...-..CGC.........ACG..C.....CG.CG..C..G.....GC...G..A..C..U......G......G.........AagaC...C........GC......G.C....U..GCC....G..U.aC.G...C...G..CUG...........GUGAUCGG................................................CGGCGCCAUCGGC
   NZ_OU343031.1     AAU.UUU....CU.AGC.G.AC...A....GCCGG....UG.GCU...G..G..A.AA..CGCUGG...GCAU.................................................................................UCAC...CGCG..U......U..A..G.G....UA......C...C...CUAU..CC....A..UG..G.U.A.......GU.G.AU......AA...C...U.UU..U.U...U...A...UU.U..A.A...........................................................................G..A.A..A...A..AUA.........---..G.....UA.GA..C..A.....AA...A..A..C..U......A......U.........U...U...U........GU......G.C....G..GCU....U..U..A.G...C...A..CUA...........AUUUUCGG................................................UGGUGCGCUCGGC
   NZ_OU594967.1     AGU.UUU....CU.UGA.U.UC...U....CAGGG....CG.GAA...U..G..C.AG..CGCUGG...UUUU.................................................................................UUAG...UGCC..C......U..G..G.C....GG......U...G...GUGG..UC....U..GU..U.U.G.......GU.C.CU......AG...U...U.UG..G.U...G...C...UU.G..A.A...........................................................................A..C.G..G...A..UGA.........GAG..A.....AC.CU..C..A.....GC...C..G..C..U......G......A.........G...U...G........CC......G.C....U..GGA....U..A..U.G...C...A..UUA...........GUCAUUAG................................................UGGGGCAUUGGGA


   Structure         (((.(((.......(((.(.((.........((((.......(((...(..(..(.((................................................................................................))))...)))).........)..)..).)............)...)...))))...........((..(.(.(..........(.((...............(.((..(.(...............................................................................................)..).)..)...)..............)))........)).))..)........))...)..)..)..)..........................................................(((....(..(..(.(...(...(..(((...................................................................))))))).)))))


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yaaY-ribF-ileS-lspA-fkpB-ispH



Position: 4220-4349, Conformation: #0







97% 90% 75% 50% Nucleotide present N N N Nucleotide identify E < 0.1 Base-pair covariation E < 0.05 Helix-level covariation 97% 90% 75%

A G Y U U Y Y U R G R Y R R G G Y U G G C A R C G U G G Y U U U Y R Y R U G Y R R Y Y Y U Y R U R R Y R Y G C Y R C Y U R R U Y U G G Y G G G C U G G Y 5'