trxA



Position: 300-429, Conformation: #1







DMS reactivity > 1.0 0.0 0.4 0.7 G/U/No data
Position: 0 (position.label in template: 0.5')5' Position: 1 (position.label in template: 1.U) Reactivity: nanU Position: 2 (position.label in template: 2.G) Reactivity: nanG Position: 3 (position.label in template: 3.C) Reactivity: nanC Position: 4 (position.label in template: 4.A) Reactivity: nanA Position: 5 (position.label in template: 5.A) Reactivity: nanA Position: 6 (position.label in template: 6.A) Reactivity: nanA Position: 7 (position.label in template: 7.A) Reactivity: nanA Position: 8 (position.label in template: 8.C) Reactivity: nanC Position: 9 (position.label in template: 9.U) Reactivity: nanU Position: 10 (position.label in template: 10.G) Reactivity: nanG Position: 11 (position.label in template: 11.A) Reactivity: nanA Position: 12 (position.label in template: 12.A) Reactivity: nanA Position: 13 (position.label in template: 13.C) Reactivity: nanC Position: 14 (position.label in template: 14.A) Reactivity: nanA Position: 15 (position.label in template: 15.U) Reactivity: nanU Position: 16 (position.label in template: 16.C) Reactivity: nanC Position: 17 (position.label in template: 17.G) Reactivity: nanG Position: 18 (position.label in template: 18.A) Reactivity: nanA Position: 19 (position.label in template: 19.U) Reactivity: nanU Position: 20 (position.label in template: 20.C) Reactivity: nanC Position: 21 (position.label in template: 21.A) Reactivity: nanA Position: 22 (position.label in template: 22.A) Reactivity: nanA Position: 23 (position.label in template: 23.A) Reactivity: nanA Position: 24 (position.label in template: 24.A) Reactivity: nanA Position: 25 (position.label in template: 25.C) Reactivity: nanC Position: 26 (position.label in template: 26.C) Reactivity: nanC Position: 27 (position.label in template: 27.C) Reactivity: nanC Position: 28 (position.label in template: 28.U) Reactivity: nanU Position: 29 (position.label in template: 29.G) Reactivity: nanG Position: 30 (position.label in template: 30.G) Reactivity: nanG Position: 31 (position.label in template: 31.C) Reactivity: nanC Position: 32 (position.label in template: 32.A) Reactivity: nanA Position: 33 (position.label in template: 33.C) Reactivity: nanC Position: 34 (position.label in template: 34.U) Reactivity: nanU Position: 35 (position.label in template: 35.G) Reactivity: nanG Position: 36 (position.label in template: 36.C) Reactivity: 1C Position: 37 (position.label in template: 37.G) Reactivity: nanG Position: 38 (position.label in template: 38.C) Reactivity: 0C Position: 39 (position.label in template: 39.C) Reactivity: 0C Position: 40 (position.label in template: 40.G) Reactivity: nanG Position: 41 (position.label in template: 41.A) Reactivity: 0.5A Position: 42 (position.label in template: 42.A) Reactivity: 1A Position: 43 (position.label in template: 43.A) Reactivity: 0.5A Position: 44 (position.label in template: 44.U) Reactivity: nanU Position: 45 (position.label in template: 45.A) Reactivity: 1A Position: 46 (position.label in template: 46.U) Reactivity: nanU Position: 47 (position.label in template: 47.G) Reactivity: nanG Position: 48 (position.label in template: 48.G) Reactivity: nanG Position: 49 (position.label in template: 49.C) Reactivity: 0C Position: 50 (position.label in template: 50.A) Reactivity: 0.5A Position: 51 (position.label in template: 51.U) Reactivity: nanU Position: 52 (position.label in template: 52.C) Reactivity: 0.5C Position: 53 (position.label in template: 53.C) Reactivity: 0.5C Position: 54 (position.label in template: 54.G) Reactivity: nanG Position: 55 (position.label in template: 55.U) Reactivity: nanU Position: 56 (position.label in template: 56.G) Reactivity: nanG Position: 57 (position.label in template: 57.G) Reactivity: nanG Position: 58 (position.label in template: 58.U) Reactivity: nanU Position: 59 (position.label in template: 59.A) Reactivity: 0.5A Position: 60 (position.label in template: 60.U) Reactivity: nanU Position: 61 (position.label in template: 61.C) Reactivity: 0C Position: 62 (position.label in template: 62.C) Reactivity: 0.5C Position: 63 (position.label in template: 63.C) Reactivity: 0C Position: 64 (position.label in template: 64.G) Reactivity: nanG Position: 65 (position.label in template: 65.A) Reactivity: 0A Position: 66 (position.label in template: 66.C) Reactivity: 0C Position: 67 (position.label in template: 67.U) Reactivity: nanU Position: 68 (position.label in template: 68.C) Reactivity: 0.5C Position: 69 (position.label in template: 69.U) Reactivity: nanU Position: 70 (position.label in template: 70.G) Reactivity: nanG Position: 71 (position.label in template: 71.C) Reactivity: 0C Position: 72 (position.label in template: 72.U) Reactivity: nanU Position: 73 (position.label in template: 73.G) Reactivity: nanG Position: 74 (position.label in template: 74.C) Reactivity: 0.5C Position: 75 (position.label in template: 75.U) Reactivity: nanU Position: 76 (position.label in template: 76.G) Reactivity: nanG Position: 77 (position.label in template: 77.U) Reactivity: nanU Position: 78 (position.label in template: 78.U) Reactivity: nanU Position: 79 (position.label in template: 79.C) Reactivity: 0.5C Position: 80 (position.label in template: 80.A) Reactivity: 0A Position: 81 (position.label in template: 81.A) Reactivity: 1A Position: 82 (position.label in template: 82.A) Reactivity: 0A Position: 83 (position.label in template: 83.A) Reactivity: 0.5A Position: 84 (position.label in template: 84.A) Reactivity: 0A Position: 85 (position.label in template: 85.C) Reactivity: 1C Position: 86 (position.label in template: 86.G) Reactivity: nanG Position: 87 (position.label in template: 87.G) Reactivity: nanG Position: 88 (position.label in template: 88.U) Reactivity: nanU Position: 89 (position.label in template: 89.G) Reactivity: nanG Position: 90 (position.label in template: 90.A) Reactivity: 0A Position: 91 (position.label in template: 91.A) Reactivity: 1A Position: 92 (position.label in template: 92.G) Reactivity: nanG Position: 93 (position.label in template: 93.U) Reactivity: nanU Position: 94 (position.label in template: 94.G) Reactivity: nanG Position: 95 (position.label in template: 95.G) Reactivity: nanG Position: 96 (position.label in template: 96.C) Reactivity: 0C Position: 97 (position.label in template: 97.G) Reactivity: nanG Position: 98 (position.label in template: 98.G) Reactivity: nanG Position: 99 (position.label in template: 99.C) Reactivity: 0C Position: 100 (position.label in template: 100.A) Reactivity: 0A Position: 101 (position.label in template: 101.A) Reactivity: 0.5A Position: 102 (position.label in template: 102.C) Reactivity: 0.5C Position: 103 (position.label in template: 103.C) Reactivity: 0C Position: 104 (position.label in template: 104.A) Reactivity: 0A Position: 105 (position.label in template: 105.A) Reactivity: 0A Position: 106 (position.label in template: 106.A) Reactivity: 1A Position: 107 (position.label in template: 107.G) Reactivity: nanG Position: 108 (position.label in template: 108.U) Reactivity: nanU Position: 109 (position.label in template: 109.G) Reactivity: nanG Position: 110 (position.label in template: 110.G) Reactivity: nanG Position: 111 (position.label in template: 111.G) Reactivity: nanG Position: 112 (position.label in template: 112.U) Reactivity: nanU Position: 113 (position.label in template: 113.G) Reactivity: nanG Position: 114 (position.label in template: 114.C) Reactivity: 0.5C Position: 115 (position.label in template: 115.A) Reactivity: 0A Position: 116 (position.label in template: 116.C) Reactivity: 1C Position: 117 (position.label in template: 117.U) Reactivity: nanU Position: 118 (position.label in template: 118.G) Reactivity: nanG Position: 119 (position.label in template: 119.U) Reactivity: nanU Position: 120 (position.label in template: 120.C) Reactivity: 0C Position: 121 (position.label in template: 121.U) Reactivity: nanU Position: 122 (position.label in template: 122.A) Reactivity: 1A Position: 123 (position.label in template: 123.A) Reactivity: 1A Position: 124 (position.label in template: 124.A) Reactivity: 1A Position: 125 (position.label in template: 125.G) Reactivity: nanG Position: 126 (position.label in template: 126.G) Reactivity: nanG Position: 127 (position.label in template: 127.U) Reactivity: nanU Position: 128 (position.label in template: 128.C) Reactivity: 1C Position: 129 (position.label in template: 129.A) Reactivity: 0A Position: 130 (position.label in template: 130.G) Reactivity: nanG Position: 131 (position.label in template: 131.U) Reactivity: nanU Position: 132 (position.label in template: 132.U) Reactivity: nanU Position: 133 (position.label in template: 133.G) Reactivity: nanG Position: 134 (position.label in template: 134.A) Reactivity: 0.5A Position: 135 (position.label in template: 135.A) Reactivity: 1A Position: 136 (position.label in template: 136.A) Reactivity: 1A Position: 137 (position.label in template: 137.G) Reactivity: nanG Position: 138 (position.label in template: 138.A) Reactivity: nanA Position: 139 (position.label in template: 139.G) Reactivity: nanG Position: 140 (position.label in template: 140.U) Reactivity: nanU Position: 141 (position.label in template: 141.U) Reactivity: nanU Position: 142 (position.label in template: 142.C) Reactivity: nanC Position: 143 (position.label in template: 143.C) Reactivity: nanC Position: 144 (position.label in template: 144.U) Reactivity: nanU Position: 145 (position.label in template: 145.C) Reactivity: nanC Position: 146 (position.label in template: 146.G) Reactivity: nanG Position: 147 (position.label in template: 147.A) Reactivity: nanA Position: 148 (position.label in template: 148.C) Reactivity: nanC Position: 149 (position.label in template: 149.G) Reactivity: nanG Position: 150 (position.label in template: 150.C) Reactivity: nanC Position: 151 (position.label in template: 151.U) Reactivity: nanU Position: 152 (position.label in template: 152.A) Reactivity: nanA Position: 153 (position.label in template: 153.A) Reactivity: nanA Position: 154 (position.label in template: 154.C) Reactivity: nanC Position: 155 (position.label in template: 155.C) Reactivity: nanC Position: 156 (position.label in template: 156.U) Reactivity: nanU Position: 157 (position.label in template: 157.G) Reactivity: nanG Position: 158 (position.label in template: 158.G) Reactivity: nanG Position: 159 (position.label in template: 159.C) Reactivity: nanC Position: 160 (position.label in template: 160.G) Reactivity: nanG Position: 161 (position.label in template: 161.U) Reactivity: nanU Position: 162 (position.label in template: 162.A) Reactivity: nanA Position: 163 (position.label in template: 163.A) Reactivity: nanA Position: 164 (position.label in template: 164.G) Reactivity: nanG Position: 165 (position.label in template: 165.G) Reactivity: nanG Position: 166 (position.label in template: 166.G) Reactivity: nanG Position: 167 (position.label in template: 167.A) Reactivity: nanA Position: 168 (position.label in template: 168.A) Reactivity: nanA Position: 169 (position.label in template: 169.U) Reactivity: nanU Position: 170 (position.label in template: 170.U) Reactivity: nanU Position: 171 (position.label in template: 171.3')3' 10 20 30 50 100 150


trxA



Position: 300-429, Conformation: #1







Retained alignments:


   NC_000918.1       CACCGAC....GAAAA..U..C..C.CA......A.C......A...U...A..G.C...A..A...U...G...A...G.....G...U.ACGGCA..U.C..A.GG..GC.U..AUACCCACG.AU.A.A.UCCUCUUCAAAAA...UGGGG...A.G......G.U.G..G............U..G.G...A.U.A..CA.A..G.A...AU..A...G..GUGUC..CAA...CCA....AAA...G....A....A.CG....A....U...U....A....A..A...C....A.AAU..G.GUU....C...-...-.-.-..-..-..-..-.-..-uugagc..........................acguuu..-..-..-....-.-...-..-..-........A..A...U..A..A.U.U
   NC_002932.3       CGUCGAU....GAGAA..C..C..C.GA......A.C......A...C...-..-.C...G..C...C...Gg.cC...A.....G...U.ACGGCA..U.C..C.GC..AG.C..AUUCCCACC.AU.G.C.UGAUCAUCAAGGG...UGGCA...A.G......G.U.U..G............U..U.G...A.C.C..AG.A..U.G...GU..U...G..GCGCU..CUG...CCU....AAG...A....A....-.--....-....-...-....-....C..A...U....G.AUC..G.CCA....A...G...A.A.G..C..U..C..G.A..C........................................G..A..G....C.A...U..A..U........C..G...G..C.uG.A.U
   NC_002977.6       CAUCGAC....GACAA..C..C..C.GG......C.G......A...C...C..C.C...G..C...A...G...C...G.....U...U.ACGGUG..U.G..C.GG..GG.C..AUCCCCACC.UU.G.A.UGGUAUUCAAGGG...CGGUG...A.A......G.U.G..G............U..C.G...C.C.A..GC.A..A.G...GU..G...G..GCGCA..UUG...ACC....AAA...U....C....C.CA....G....C...U....C....G..C...G....G.CCU..U.CCU....C...G...A.A.G..G..C..A..A.U..-........................................-..-..-....-.-...-..-..-........-..-...-..-..-.-.-
   NC_003106.2       CAGCGAC....GAAAA..U..C..C.AG......A.U......A...U...U..G.C...C..G...C...A...A...G.....A...U.AUGGUG..U.C..A.UG..AG.U..CUACCUACA.GU.U.A.UCUUCUUUAAAGA...UGGUG...A.Ac...caG.U.A..G............A..U.G...A.A.A..UU.A..U.A...GG..U...G..CUGUU..CCA...AGA....GAA...G....A...aA.UA....G....A...G....A....U..A...A....G.AAU..U.---....-...-...-.-.-..-..-..-..-.-..-a...................................ag..-..-..-....-.-...-..-..-........-..-...-..A..A.U.U
   NC_003910.7       CAUAGAU....CAAAA..C..U..C.AG......C.G......A...C...A..C.C...A..C...C...U...A...A.....A...U.AUGGUG..U.A..C.GU..GG.U..AUUCCAACA.UU.A.U.UACUUUUUAAAGA...UGGUG...A.A......A.U.U..G............C..U.G...A.C.A..CU.A..A.A...GU..G...G..GCGCA..CUA...UCG....AAA...A....C....U.CA....A....U...U....A....A..A...A....G.AGU..U.UUU....A...G...-.-.-..-..-..-..-.-..-........................................-..-..-....-.-...-..A..U........A..A...A..A..A.C.U
   NC_004578.1       CAUCGAC....GAAAA..U..C..A.GG......A.A......A...C...C..C.C...G..G...C...C...A...A.....G...C.AUGGCG..U.G..C.GU..GG.U..AUCCCGACG.CU.G.A.UGCUGUUCAAGAA...UGGCA...A.C......G.U.C..G............A..A.G...C.G.A..CC.A..A.A...GU..G...G..GCGCU..CUG...UCG....AAG...U....C....G.CA....G....C...U....G....G..C...C....G.CGU..U.UCU....C...G...A.C.G..C..C..A..A.CauC........................................U..G..A....A.G...C..A..C........-..-...-..-..-.-.-
   NC_004603.1       CAUCGAC....CAUAA..C..G..C.AG......G.C......A...C...G..C.C...G..C...C...U...A...A.....G...U.UUGGUA..U.U..C.GC..GG.U..AUUCCAACG.CU.A.C.UGUUAUUCAAAGA...CGGCA...A.C......G.U.A..G............C..G.G...C.A.A..CG.A..A.A...GU..U...G..GUGCU..UUG...UCU....AAG...A....C....U.CA....G....C...U....U....A..A...A....G.AGU..U.CUU....G...G...A.C.G..C..A..A..A.C..U........................................U..-..-....-.-...-..-..-........-..-...-..-..-.-.-
   NC_004757.1       CAUAGAU....GAAAA..C..C..A.GU......C.G......A...C...U..C.C...U..C...A...G...A...A.....G...U.ACGGUA..U.U..C.GC..GG.A..AUUCCCACC.CU.G.A.UGAUAUUCAAGAA...UGGAA...A.U......A.U.C..G............A..G.G...C.G.A..CC.A..A.G...GU..U...G..GAGCU..UUA...UCA....AAA...U....C....A.CA....G....U...U....G....A..C...A....G.CAU..U.UGU....C...G...A.C.A..G..U..C..A.U..U........................................-..-..-....U.A...U..A..A........G..A...A..A..U.U.C
   NC_005027.1       CAUCGAC....GAUAA..C..C..C.AG......G.U......G...C...C..G.C...U..C...A...A...A...A.....G...U.UCGGCA..U.C..A.AC..AG.C..AUCCCAACA.UU.G.U.UGCUGUUCAAGAA...CGGCG...A.G......A.U.C..G............C..U.G...A.C.A..CC.U..U.C...GU..U...G..GUGUU..CGC...CCG....AAA...G....C....C.GC....U....U...U....G....C..A...A....G.ACG..C.CCU....-...G...A.C.U..U..-..-..-.-..-........................................-..-..-....-.-...-..-..-........-..-...-..-..-.-.-
   NC_005126.1       CAUUGAU....GACAA..C..C..C.GG......C.A......A...C...U..G.C...U..C...C...U...A...A.....G...U.AUGGUA..U.C..C.GU..GG.U..AUUCCUACA.CU.G.U.UGCUGUUUAAAGA...UGGUC...A.G......G.U.U..G............C..U.G...C.U.A..CA.A..A.A...GU..G...G..GAGCA..CUG...UCA....AAA...A....C....U.CA....A....U...U....G....A..A...A....G.AAU..U.UUU....G...G...A.U.G..C..U..A..A.U..C......................................ucU..G..A....U.U...G..A..A........G..U...G..A..G.C.U
   NC_006300.1       UAUUGAU....GAAAA..C..C..A.AG......G.U......A...-...-..-.C...G..C...C...GgcuC...A.....G...U.UUGGCG..U.U..C.GC..AG.U..AUCCCGACA.UU.A.U.UAAUGUUUAAAGA...CGGUC...A.A......U.U.A..G............U..C.G...G.U.A..CA.C..A.A...GU..C...G..GUGCA..UUG...CCA....AAA...A....A....U.CA....A....U...U....A....G..C...G....G.CUU..U.UGU....U...G...A.G.A..A..A..A..A.C..C........................................U..U..U....A.A...U..-..U........G..U...A..A..A.A.U
   NC_006510.1       UGUCGAU....GAAAA..C..C..A.GG......A.A......A...C...A..G.C...G..U...C...G...A...A.....G...U.UCGGCG..U.C..A.UG..AG.C..AUCCCGACG.CU.G.C.UCGUGUUCAAAAA...CGGCG...A.A......C.U.U..G............U..C.G...A.U.A..AA.G..C.G...AU..C...G..GCUAU..CAG...CCG....AAA...G....A....G.GC....G....C...U....U....-..-...-....-.---..-.---....-...-...-.-.-..-..-..-..-.-..-........................................-..-..-....-.-...-..-..-........-..-...-..-..-.-.-
   NC_006512.1       CGUCGAC....CAUAA..U..G..A.AC......A.A......A...C...U..C.C...A..C...C...U...A...A.....G...U.ACAAUA..U.U..C.GU..GG.C..AUUCCAACG.UU.A.U.UGUUGUUUAAAGG...CGGCG...A.A......G.U.U..G............U..C.G...G.A.A..CG.A..A.A...GU..G...G..GCGCA..UUA...UCA....CGU...G....C....U.CA....A....U...U....G....A..C...U....G.AGU..U.UUU....A...G...A.C.-..-..-..-..-.-..-cagcauau.....................uuaaugauu..-..-..-....-.G...U..C..A........A..A...A..A..A.C.G
   NC_006513.1       CAUCGAC....GAAAA..C..C..A.GG......A.G......A...C...G..C.C...C..G...C...C...A...A.....A...U.UCGGCG..U.G..C.GG..GG.C..AUUCCGACG.CU.G.A.UGCUGUUCAA--G...GGCGG...C.Aa....cG.U.C..G............A..A.G...C.C.A..CG.A..A.G...GU..C...G..GCGCG..CUG...UCG....AAG...U....C....C.CA....G....C...U....C....A..C...U....-.---..-.---....-...-...-.-.-..-..-..-..-.-..-........................................-..-..-....-.-...-..-..-........-..-...-..-..-.-.-
   NC_006526.2       AGUCGAU....AACAA..U..A..U.CG......A.A......A...C...C..G.Cu.aG..C...C...G...-...-.....U...U.UUGGCA..U.U..C.GC..AA.U..AUCCCGACC.CU.G.C.UGCUUUUCAAAAA...UGGCG...A.A......G.U.C..G............U..G.G...C.U.A..CC.C..G.C...AC..U...G..GUGGC..GCG...CCA....AAA...A....G....C.CA....G....C...U....G....A..A...A....U.CAU..G.GAU....U...G...A.A.A..G..U..U..-.-..C........................................-..A..C....U.U...-..-..-........-..-...-..-..-.-.-
   NC_007406.1       CGUCGAC....GAGAG..C..C..C.GA......G.G......A...C...G..G.C...C..U...C...G...A...A.....A...U.ACGGCG..U.GauG.UC..GA.-..-UUCCCACU.UU.G.A.UGAUCUUCAAGGA...CGGCG...A.Ac....uG.G.C..C............U..C.G...C.-.-..GU.C..A.G...GU..C...G..GCGCG..GCG...CCC....AAG...-....-....-.CA....G....A...A....A....C..U...U....G.AGC..A.AUG....G...A...U.C.A..C..C..G..C.C..A........................................C..G..G....U.G...U..G..A........U..C...U..U..-.-.-
   NC_007498.2       CGUCGAU....GAAAA..C..C..C.CG......C.A......A...C...U..C.C...-..C...A...G..cA...A.....U...U.ACGGUG..U.G..C.GC..GG.C..AUUCCGACG.CU.G.A.UUCUGUUCAAAGA...CGGCC...A.G......G.U.-..-............C..G.U...C.G.A..CC.AggU.C...GU..C...G..GCGCU..GUG...CCC....AAA...G....G....G.CA....G....C...U....C....G..A...A....G.CCC..U.GAU....C...A...A.A.A..A..G..G..C.C..C........................................U..C..-....-.-...U..G..A........G..U...C..C..G.G.G
   NC_007510.1       CGUCGAC....GACAA..C..C..A.GG......C.A......A...C...G..C.C...C..G...C...G...A...A.....G...U.UCGGCG..U.G..C.GC..GG.C..AUCCCGACG.CU.G.A.UCCUGUUCAAGAA...CGGCG...C.G......G.C.C..G............C..C.G...C.G.C..AG.A..A.G...GU..C...G..GCGCG..CUG...UCG....AAG...U....C....G.CA....G....C...U....C....A..C...C....G.CAU..U.CCU....G...G...A.C.A..G..C..C..A.C..C........................................U..G..U....A.A...U..A..C........A..G...G..C..A.G.U
   NC_007512.1       UGUCGAU....GAUAA..C..C..C.CA......A.U......A...C...-..-.G...G..C...U...Gc.cC...A.....G...U.ACGGCA..U.C..C.GC..AG.C..AUCCCGACC.AU.G.C.UGGUGUUCAAGAA...CGGCC...A.G......G.U.U..G............U..C.G...A.C.C..AG.A..U.G...GU..U...G..GCGCC..AUG...CCG....AAG...A....A....C.AU....G....A...U....C....G..C...A....A.AGA..A.AAU....C...G...A.C.G..A..-..-..G.C..A........................................U..A..U....C.G...G..C..U........G..A...U..U..U.C.U
   NC_007575.1       CACUGAU....GAAGA..G..C..A.AG......A.U......A...U...U..G.C...U..G...U...A...A...A.....A...U.UUGGUA..U.U..C.GU..UC.U..AUCCCAACU.AU.C.A.UGUUUUUUAAAGA...UGGCA...A.A......A.U.G..G............U..-.-...A.G.A..UC.A..A.Gu.uGU..U...G..GAGCG..CAA...UCU....AAA...G....C....U.GC....U....C...U....U....G..C...A....C.AAA..A.AAU....C...G...A.C.G..C..U..C..U.U..U........................................U..A..G....C.G...U..A..A.......aG..A...U..U..U.C.U
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   NZ_LR134533.1     UAUUGAC....GAAAA..C.gA..C.CA......A.U......C...U...C..C.G...G..C...U...C...-...A.....A...U.UCGGCG..U.A..C.GC..GG.C..AUUCCGACU.UU.G.A.UGAUUUUCAAAGA...CGGUC...A.A......A.A.C..G............U..G.G...C.U.A..CC.A..A.A...GU..A...G..GCGCA..UUG...GCC....AAA...G....G....U.CA....A....U...U....G....G..U...A....G.CGU..U.UAU....C...A...A.U.G..C..U..-..-.-..-ucgcug..........................uaaucg..-..G..G....C.A...U..A..Aa......gA..U...A..A..-.-.-
   NZ_LR215729.2     CAUCGAC....GAAAA..C..C..A.GG......A.C......A...C...C..C.C...G..C...C...G...A...A.....G...U.AUGGCG..U.U..C.GU..GG.U..AUCCCAACG.CU.G.A.UGCUGUUCAAGAA...CGGCA...A.C......G.U.U..G............A..G.G...C.G.A..CC.A..A.A...GU..C...G..GCGCA..CUG...UCG....AAG...U....C....G.CA....A....C...U....G....G..C...U....G.CAU..U.CCU....C...G...A.U.A..G..C..A..A.U..A........................................U..-..-....-.-...-..-..-........-..-...-..-..-.-.-
   NZ_LR217713.1     CAUUGAU....AAAAA..U..C..C.GU......G.U......A...C...G..G.C...G..C...C...A...C...A.....A...U.AUAGUA..U.U..C.GG..AG.C..AUUCCGACU.CU.U.C.UUCUUUUUAAAGA...AGGUC...A.A......G.U.U..A............U..U.G...C.A.A..CU.C..A.A...GU..U...G..GUUCU..UUA...UCU....AAA...A....G....A.CA....A....C...U....A....A..G...U....G.ACU..U.UUU....A...G...A.-.-..-..-..-..-.-..-uguacauuua.................aacuaagacgu..-..-..-....-.-...U..A..A........G..A...G..A..A.A.U
   NZ_LR590484.1     UGUGGAU....GAAAA..U..C..C.GG......A.G......A...U...U..U.C...G..G...U...C...C...G.....U...U.ACGGCA..U.C..C.GU..AA.U..AUUCCGGCU.UU.A.U.UAUUUUUCAAAAA...UGGUG...A.G......A.U.U..G............U..U.G...A.C.A..AA.C..A.A...AU..U...G..GUGCU..GUU...CCG....AAA...U....C....A.GU....G....C...U....G....A..A...U....G.AGA..A.AU-....-...-...-.-.-..-..-..-..-.-..-uagaaaaacaau.............uggguuaguauuc..-..-..-....-.-...-..-..-........-..A...U..U..U.U.U
   NZ_LR699007.1     CAUCGAU....GAUAA..C..C..C.GC......A.G......A...C...A..G.C...G..C...C...G...C...A.....A...U.ACGGCA..U.C..C.GC..GG.U..AUCCCGACA.UU.A.C.UGCUGUUCAAAGA...CGGCG...U.G......G.U.G..A............A..G.G...C.A.A..CG.C..A.G...GU..U...G..GUGCG..GUA...UCC....AAA...A....C....C.CA....G....C...U....G....A..A...A....A.CCU..U.UAU....C...G...A.U.-..-..-..-..-.-..-aacaauaucugau............agccgguuucagc..-..-..-....-.A...U..A..U........G..U...-..-..-.-.-
   NZ_LR699553.1     CGUCGAC....GAACA..C..C..A.AU......C.G......A...C...U..C.C...G..G...U...C...A...A.....G...U.UCGGCG..U.G..C.GC..GG.C..AUCCCCACG.CU.G.A.UUCUUUUCAAGAA...CGGCG...C.U......G.U.C..G............C..C.G...C.G.C..AG.A..A.A...GU..C...G..GCGCG..UUG...UCG....AAG...U....C....G.CA....A....C...U....U....A..C...C....G.CGU..U.CCU....C...G...A.C.G..G..C..A..A.C..C........................................U..G..U....A.A...A..A..G........C..G...G..-..-.-.-
   NZ_LR778175.1     UAUUGAC....GAAAA..U..C..C.AG......G.U......A...C...U..C.C...A..C...C...A...A...A.....A...U.AUGGCA..U.U..C.GG..GG.U..AUUCCUACU.UU.A.A.UGCUAUUUAAAAA...UGGAA...A.A......G.U.A..G............A..C.G...C.U.A..CU.A..A.G...GU..A...G..GAUUA..UUA...UCU....AAA...U....C....U.GA....G....U...U....G....A..C...C....A.CCU..U.AUU....A...G...A.U.-..-..-..-..-.-..-agc................................cgc..-..-..-....-.U...U..A..G........A..A...G..A..A.G.C
   NZ_LR822015.1     UGUUGAU....GAGAA..U..C..C.AG......A.A......A...C...A..G.C...A..C...A...A...A...A.....A...U.UU-GGA..A.U..U.AU..GUcU..AUCCCAACU.UU.G.U.UAUUCAAAAAAGA...UGGUG...A.G......G.U.U..G............U..U.A...A.G.C..AA.G..U.U...GC..A...G..GUGUC..CAU...ACA....AAA...G....A....A.CA....A....A...U....U....A..A...A....G.CCA..U.CGU....U...U...C.U.G..A..G..C..U.U..A........................................G..C..U....A.A...G..U..A........A..U...C..A..U.G.G
   NZ_LR890047.1     UAUAGAU....UCAAA..U..C..C.GC......A.A......A...C...U..G.C...G..C...C...G...A...A.....A...U.UUGGCA..U.A..C.GU..GG.U..AUUCCAGCG.CU.U.C.UUCUCUUCAAGAA...AGGGA...C.U......G.U.A..U............C..U.G...C.A.A..CG.A..A.A...GU..A...G..GCGCU..UUA...UCC....AAA...A....A....A.CA....A....U...U....A....G..A...A....G.AGU..U.UUU....G...G...A.U.G..C..U..A..A.U..U........................................U..A..U....A.A...U..U..A........G..U...A..U..C.C.U
   NZ_LS483250.1     UAUCGAU....CAAAA..U..U..C.AG......A.U......A...C...U..C.C...A..C...C...U...A...A.....A...U.UUGGUA..U.U..C.GC..GG.U..AUUCCGACU.UU.A.U.UGUUAUUUAAAAA...UGGUG...C.U......G.U.A..G............C..A.G...C.A.A..CU.A..A.A...GU..U...G..GCGCA..UUA...UCA....AAA...G....C....G.CA....A....U...U....A....C..A...A....A.GUU..U.UCU....A...G...A.C.G..A..A..A..A.C..C........................................U..G..U....A.A...C..A..U........G..U...A..A..A.A.U
   NZ_LS483369.1     UAUCGAU....GACAA..U..G..A.AG......U.C......A...C...C..C.C...G..U...C...C...C...G.....U...U.UCGGCG..U.A..C.GC..GG.U..AUUCCGACC.CU.G.A.UGGUAUUCAAAAA...CGGCG...A.A......G.U.C..G............U..C.G...C.U.A..CC.A..A.A...GU..C...G..GCGCA..UUG...GCA....AAA...G....G....U.CA....G....C...U....G....A..C...U....G.CCU..U.UGU....U...G...A.G.G..C..U..U..C.C..A........................................U..C..G....C.C...U..A..A.......cG..G...C..A..A.U.-
   NZ_LS483422.1     UAUUGAU....GAAAA..C..C..C.GG......C.U......A...C...C..G.C...U..C...C...C...A...A.....A...U.AUGGCA..U.U..C.GC..GG.U..AUCCCAACG.CU.U.C.UAUUAUUCAAAAA...UGGUA...G.U......G.U.A..G............C..A.G...C.A.A..CA.A..A.A...GU..U...G..GUGCA..UUA...UCU....AAA...A....C....C.CA....A....C...U....G....A..A...A....G.AAU..U.UCU....A...G...A.C.G..A..A..A..A.U..C........................................U..-..-....-.G...U..A..A........G..U...U..A..-.-.-
   NZ_LS483429.1     UGUGGAC....GACAA..C..C..A.AG......C.A......A...C...G..C.C...A..G...C...A...C...A.....A...U.UUGGUG..U.U..C.GU..AG.U..AUCCCAACA.UU.A.U.UAUUGAUUAAAAA...UGGUC...A.A......G.U.U..G............U..U.G...C.G.A..CU.C..A.A...GU..U...G..GUGCA..UUA...GCA....AAA...A....C....U.CA....A....U...U....A....G..C...U....-.---..-.---....-...-...-.-.-..-..-..-..-.-..-........................................-..-..-....-.-...-..-..-........-..-...-..-..-.-.-
   NZ_LS483443.1     UAUCGAU....GACAA..C..-..C.AA......G.C......U...A..cC..C.C...A..A...U...G...C...A.....A...U.UCGGUG..U.G..C.GC..AG.C..AUCCCAACA.UU.A.C.UCUUGUUUAAAGA...CGGUA...A.A......C.C.G..G............U..U.G...C.C.A..CU.C..A.A...GU..G...G..GUGCA..UUA...CCA....AAA...A....A....U.CA....A....U...U....G....G..C...U....G.CAU..U.UAU....C...A...A.C.C..A..A..A..A.U..A........................................U..-..-....-.-...-..-..-........-..-...-..-..-.-.-
   NZ_LS483458.1     UGUGGAU....GACAA..C..C..A.AG......C.A......A...C...U..C.C...A..G...C...A...C...A.....A...U.UUGGUG..U.U..C.GU..AG.U..AUCCCAACA.UU.A.U.UAUUGAUUAAAAA...UGGUC...A.A......G.U.U..G............U..U.G...C.A.A..CU.C..A.A...GU..U...G..GUGCA..UUA...CCA....AAA...A....C....U.CA....A....U...U....G....G..C...U....-.---..-.---....-...-...-.-.-..-..-..-..-.-..-........................................-..-..-....-.-...-..-..-........-..-...-..-..-.-.-
   NZ_LS483470.1     UAUCGAU....GAAAA..C..C..C.UG......C.A......A...C...U..G.C...A..C...C...G...C...A.....G...U.AUGGCA..U.U..C.GC..GG.U..AUCCCUACU.CU.G.C.UGUUGUUUAAAGA...CGGCG...C.C......G.U.G..G............C..G.G...C.A.A..CC.A..A.A...GU..U...G..GUGCG..CUG...UCU....AAG...U....C....U.CA....G....U...U....A....A..A...A....G.AGU..U.UUU....G...G...A.C.A..A..U..A..G.C..-cu..................................cu..-..A..A....U.A...U..U..C........-..-...-..-..-.-.-
   NZ_LT594522.1     AAUUGAC....AAUAA..U..U..C.UA......U.U......A...C...U..G.C...A..C...C...G...A...A.....A...U.AUGGUA..U.A..C.UU..AG.U..AUUCCUACA.UU.G.U.UGCUGUUUCGUGA...UGGUA...A.A......G.C.A..A............U..A.G...C.U.A..CU.A..G.G...GU..U..aG..GAUCU..CUG...UUU....AAA...A....-....-.--....-....-...-....-....A..A...A....U.UUU..U.ACU....C...A...-.-.-..-..-..-..-.-..-a...................................au..-..-..-....-.-...-..-..A........U..G...U..A..A.A.A
   NZ_LT605205.1     UGUGGAU....GAGAA..C..G..A.CG......A.A......A...C...U..A.-...-..C...C...Gg.cA...A.....A...U.ACGGAA..U.C..C.GC..AA.U..AUCCCUACC.GU.G.C.UUUUCAUUAAAAA...CGGAA...A.A......G.U.G..G............U..G.G...A.C.A..AA.C..U.G...GU..A...G..GUGCA..GGC...CCC....AAA...A....C....C.CU....U....U...U....U....A..C...U....G.AGA..A.AAU....C...G...A.U.-..-..-..-..-.-..-aaguua..........................guauaa..-..-..-....-.A...U..A..A........A..C...U..A..U.U.U
   NZ_LT615228.1     UGUGGAU....GAGAA..C..C..A.AG......G.U......G...U..aC..C.U...G..C...C...C...A...-.....G...U.UCAAUA..U.U..C.GC..GG.C..AUUCCGACU.CU.A.A.UUCUGUUUAAAAA...UGGCA...C.U......G.U.G..G............C..U.G...C.U.C..AA.A..A.A...GU..A...G..GCGCA..UUG...GCU....AAA...U....C....U.CA....G....U...U....G....A..C...U....G.CAU..U.UAU....U...G...A.U.A..G..U..C..A.U..-........................................-..-..C....U.G...U..A..A........A..U...C..G..-.-.-
   NZ_LT615367.1     CAUUGAU....GAAAA..C..C..C.GG......C.G......A...C...G..G.C...A..C...C...G...A...A.....A...U.AUGGCA..U.C..C.GU..GG.C..AUUCCUACU.CU.G.C.UGCUGUUCAAGAA...UGGCG...A.A......G.U.G..G............C..A.G...C.A.A..CG.A..A.A...GU..G...G..GUGCG..CUG...UCG....AAA...G....G....C.CA....G....U...U....A....A..A...A....G.AGU..U.UCU....G...A...A.C.G..C..C..A..A.U..C........................................U..G..U....A.A...U..U..C........-..-...-..-..-.-.-
   NZ_LT897836.1     UAUUGAC....GAGAA..U..C..C.AG......C.U......A...C...U..G.C...A..C...C...U...A...A.....G...U.AUAAUG..U.C..C.GC..GG.A..AUUCCUACC.UU.A.U.UGUUAUUUUGUGA...UGGUA...A.A......G.U.A..G............U..A.G...C.U.A..CC.A..A.A...GU..G...G..GCGCU..CUA...UCC....AAA...G....A....A.CA....G....U...U....A....A..A...A....G.AGU..U.CCU....U...A...-.-.A..C..A..A..AaA..U........................................U..U..G....U.A...A..A..A........U..A...G..U..A.U.U
   NZ_LT906435.1     UGUGGAC....GAGCA..C..C..A.GG......G.C......G...U...G..C.C...G..G...C...C...A...A.....G...U.UCGGCA..U.U..C.GC..GG.C..AUCCCGACG.CU.G.A.UUCUGUUCAAGAA...CGGCG...C.U......G.U.C..G............C..C.G...C.U.C..AA.A..A.G...GU..C...G..GUGCC..CUG...UCG....AAG...U....C....G.CA....A....C...U....G....A..C...C....U.CGU..U.CCU....C...G...A.C.G..G..C..A..A.U..C........................................U..-..-....-.G...U..A..A........-..-...-..A..A.C.G
   NZ_LT906439.1     UGUGGAU....GAAAA..U..C..C.AU......C.U......A...C...U..G.C...U..C...G...U...G...A.....A...U.UUGGUA..U.C..A.UG..AG.U..AUUCCGACC.CU.C.A.---UGUUCAAAAA...AGAUG...G.C......C.A.A..G............U..U.G...U.U.A..AA.C..A.A...GU..-...U..GCAGG..---...U--....---...G....U....A.CA....C....A...C....C....A..A...A....G.ACC..A.ACU....C...A...A.A.G..C..C..A..U.U..A........................................U..U..G....C.-...U..G..A........G..A...U..U..G.G.U
   NZ_LT906463.1     UGUGGAU....GAGAA..C..-..C.AA......G.U......G...A..cU..C.C...G..G...C...A...C...A.....A...U.UCGGCG..U.U..C.GU..AG.U..AUCCCAACU.UU.A.U.UAUUAUUCAAAGA...UGGUC...A.A......U.U.G..G............U..G.G...C.A.A..CU.C..A.A...GU..U...G..GUGCA..UUA...CCA....AAA...G....G....U.CA....A....U...U....G....G..C...U....G.CAU..U.UAU....U...A...A.U.C..A..G..C..A.C..A........................................U..C..U....A.A...U..C..A........A..U...A..A..U.-.-
   NZ_LT906479.1     CAUCGAU....CAAAA..C..C..C.GG......C.G......A...C...C..G.C...U..C...C...C...A...A.....G...U.ACGGUA..U.C..C.GC..GG.U..AUCCCUACG.CU.G.U.UGCUGUUCAAGAA...CGGUG...A.A......G.U.G..G............C..C.G...C.G.A..CC.A..A.G...GU..G...G..GCGCG..UUG...UCC....AAA...G....G....U.CA....G....C...U....C....A..A...A....G.AUU..U.CCU....G...A...A.C.G..C..G..A..A.-..-ucuguaaucg.................ggcgggaagcc..-..-..-....-.-...-..-..-........-..-...-..-..-.-.-
   NZ_LT906482.1     UAUCGAC....GAAAA..C..G..A.GC......A.A......A...C...C..C.C...C..G...C...C...C...A.....A...U.UCGGCG..U.G..C.GC..GG.C..AUCCCCACC.CU.G.A.UGGUGUUCAAC--...GGCGG..cC.A.....gC.G.C..G............U..G.G...C.C.A..CC.A..A.A...GU..G...G..GCGCC..CUG...AGC....AAA...G....G....C.CA....G....C...U....C....A..C...C....G.AUU..U.CUU....G...A...A.C.G..C..U..U..-.-..-........................................C..A..C....U.G...U..A..A........U..A...-..-..-.-.-
   NZ_OU015430.1     CGUCGAC....CACAA..C..C..G.CG......C.C......A...C...C..G.C...G..A...U...G...A...A.....G...U.ACCACG..U.U..C.GC..UC.G..AUCCCGAUG.CU.G.C.UGCUGUUCAAGGA...CGGCC...A.G......G.U.G..C............A..G.C...A.G.A..CG.C..A.G...AU..C...G..GCGCG..GUC...GGC....AAG...G....G....C.CA....G....C...U....G....G..C...C....C.AGA..U.GAU....C...G...A.C.A..A..G..G..C.G..C........................................U..U..U....-.-...-..-..-........-..-...-..-..-.-.-
   NZ_OU343031.1     CGUUGAU....CAGAA..U..C..C.AG......C.U......A...C...A..C.C...G..G...C...C...A...A.....A...U.UUAGCG..U.G..C.GA..GG.A..AUUCCAACG.CU.G.A.UUCUAUUUAAGAA...CGGCG...U.G......G.U.G..G............C..C.C...A.A.A..CC.A..A.G...GU..U...G..GCGCA..UUA...UCU....AAG...G....C....A.CA....A....A...U....U....A..C...A....G.CGC..U.GAU....U...G...-.-.-..-..-..-..-.-..-auagccau.....................auuugagcc..-..-..-....-.-...-..-..-........A..U...C..G..G.C.G
   NZ_OU594967.1     CAUCGAU....GAACA..G..G..C.UG......A.A......A...C...A..G.C...G..C...C...U...A...A.....A...U.AUGGGA..U.U..C.GU..GG.U..AUUCCUACU.UU.G.A.UGAUCUUUAAAGA...UCGUA...A.U......G.U.G..G............C..C.G...C.G.A..CU.A..A.A...GU..U...G..GUGCC..CUA...UCA....AAG...C....A....G.CA....A....U...U....A....C..A...U....G.AAU..U.UAU....U...A...A.C.G..A..A..A..A.C..A........................................U..U..U....A.A...U..U..U........-..-...-..-..-.-.-
   NZ_OU907312.1     UAUUGAU....GAAAA..C..C..C.CG......U.C......A...C...C..G.C...G..C...C...G...A...A.....G...U.AUCAUA..U.C..C.GC..AG.C..AUUCCAACC.CU.G.C.UAUUAUUCAAACA...GGGAG...C.C......G.U.G..G............U..G.G...C.U.A..CU.C..A.G...GU..G...G..GCGGA..CUA...UCC....ACA...-....-....-.--....-....-...-....-....A..A...A....G.AGC..U.AGG....U...G...A.U.U..U..U..U..U.A..A........................................A..A..A....A.A...C..A..U........C..U...-..-..-.-.-
   NZ_OU912926.1     UGUAGAU....GAAAA..C..C..A.AC......A.A......A...C...U..C.C...G..C...A...G...A...A.....A...U.ACGGUG..U.C..C.GU..GG.C..AUUCCCACA.CU.A.A.UGCUGUUCAAGAA...CGGAA...A.U......A.U.U..G............A..A.G...C.A.A..CU.A..A.A...GU..C...G..GCGCG..UUA...UCU....AAA...U....C....G.CA....G....C...U....C....A..C...C....G.CGU..U.UAU....U...G...A.C.A..-..-..-..-.-..-gcc................................aua..-..-..-....U.C...U..A..A........A..U...C..A..-.-.-


   Structure         ((((.((.................(.((........(......(...(........(...(..(...(...(.....................((((.........((..((..............)).).)....)))).........)))))............).).)...............)..).)......................))......)..)))..........................................................................(((..(.(((............(.(.(..(..(..(................................................)..)..)....).)...)..............)..)...)..)..).).)


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trxA



Position: 300-429, Conformation: #1







97% 90% 75% 50% Nucleotide present N N N Nucleotide identify E < 0.1 Base-pair covariation E < 0.05 Helix-level covariation 97% 90% 75%

Y R U Y G A Y R A R A A Y R R Y C C A R U Y G G Y R U C G Y R G Y A U Y C C A C Y U R U U U U Y A A R R A Y G G Y R A R R U G Y G A R A R G U G G Y G C Y R Y C A A R A R Y U R R Y U R 5'