tisB



Position: 121-210, Conformation: #0







DMS reactivity > 1.0 0.0 0.4 0.7 G/U/No data
Position: 0 (position.label in template: 0.5')5' Position: 1 (position.label in template: 1.U) Reactivity: nanU Position: 2 (position.label in template: 2.G) Reactivity: nanG Position: 3 (position.label in template: 3.U) Reactivity: nanU Position: 4 (position.label in template: 4.U) Reactivity: nanU Position: 5 (position.label in template: 5.A) Reactivity: nanA Position: 6 (position.label in template: 6.U) Reactivity: nanU Position: 7 (position.label in template: 7.G) Reactivity: nanG Position: 8 (position.label in template: 8.U) Reactivity: nanU Position: 9 (position.label in template: 9.C) Reactivity: nanC Position: 10 (position.label in template: 10.A) Reactivity: nanA Position: 11 (position.label in template: 11.A) Reactivity: nanA Position: 12 (position.label in template: 12.C) Reactivity: nanC Position: 13 (position.label in template: 13.A) Reactivity: nanA Position: 14 (position.label in template: 14.A) Reactivity: nanA Position: 15 (position.label in template: 15.G) Reactivity: nanG Position: 16 (position.label in template: 16.C) Reactivity: nanC Position: 17 (position.label in template: 17.A) Reactivity: nanA Position: 18 (position.label in template: 18.C) Reactivity: nanC Position: 19 (position.label in template: 19.A) Reactivity: nanA Position: 20 (position.label in template: 20.A) Reactivity: nanA Position: 21 (position.label in template: 21.C) Reactivity: nanC Position: 22 (position.label in template: 22.G) Reactivity: nanG Position: 23 (position.label in template: 23.U) Reactivity: nanU Position: 24 (position.label in template: 24.U) Reactivity: nanU Position: 25 (position.label in template: 25.U) Reactivity: nanU Position: 26 (position.label in template: 26.C) Reactivity: nanC Position: 27 (position.label in template: 27.U) Reactivity: nanU Position: 28 (position.label in template: 28.C) Reactivity: nanC Position: 29 (position.label in template: 29.C) Reactivity: nanC Position: 30 (position.label in template: 30.U) Reactivity: nanU Position: 31 (position.label in template: 31.U) Reactivity: nanU Position: 32 (position.label in template: 32.G) Reactivity: nanG Position: 33 (position.label in template: 33.A) Reactivity: 0A Position: 34 (position.label in template: 34.G) Reactivity: nanG Position: 35 (position.label in template: 35.A) Reactivity: 0A Position: 36 (position.label in template: 36.U) Reactivity: nanU Position: 37 (position.label in template: 37.A) Reactivity: 0A Position: 38 (position.label in template: 38.C) Reactivity: 0C Position: 39 (position.label in template: 39.C) Reactivity: 0C Position: 40 (position.label in template: 40.G) Reactivity: nanG Position: 41 (position.label in template: 41.C) Reactivity: 1C Position: 42 (position.label in template: 42.G) Reactivity: nanG Position: 43 (position.label in template: 43.U) Reactivity: nanU Position: 44 (position.label in template: 44.G) Reactivity: nanG Position: 45 (position.label in template: 45.C) Reactivity: 0C Position: 46 (position.label in template: 46.A) Reactivity: 1A Position: 47 (position.label in template: 47.C) Reactivity: 1C Position: 48 (position.label in template: 48.A) Reactivity: 0A Position: 49 (position.label in template: 49.A) Reactivity: 0A Position: 50 (position.label in template: 50.C) Reactivity: 0C Position: 51 (position.label in template: 51.A) Reactivity: 0A Position: 52 (position.label in template: 52.G) Reactivity: nanG Position: 53 (position.label in template: 53.C) Reactivity: 0C Position: 54 (position.label in template: 54.U) Reactivity: nanU Position: 55 (position.label in template: 55.G) Reactivity: nanG Position: 56 (position.label in template: 56.G) Reactivity: nanG Position: 57 (position.label in template: 57.C) Reactivity: 0C Position: 58 (position.label in template: 58.A) Reactivity: 0.5A Position: 59 (position.label in template: 59.A) Reactivity: 1A Position: 60 (position.label in template: 60.C) Reactivity: 0C Position: 61 (position.label in template: 61.A) Reactivity: 0A Position: 62 (position.label in template: 62.G) Reactivity: nanG Position: 63 (position.label in template: 63.G) Reactivity: nanG Position: 64 (position.label in template: 64.C) Reactivity: 0C Position: 65 (position.label in template: 65.A) Reactivity: 1A Position: 66 (position.label in template: 66.G) Reactivity: nanG Position: 67 (position.label in template: 67.C) Reactivity: 0C Position: 68 (position.label in template: 68.G) Reactivity: nanG Position: 69 (position.label in template: 69.G) Reactivity: nanG Position: 70 (position.label in template: 70.A) Reactivity: 0A Position: 71 (position.label in template: 71.A) Reactivity: 0A Position: 72 (position.label in template: 72.A) Reactivity: 0A Position: 73 (position.label in template: 73.G) Reactivity: nanG Position: 74 (position.label in template: 74.G) Reactivity: nanG Position: 75 (position.label in template: 75.U) Reactivity: nanU Position: 76 (position.label in template: 76.A) Reactivity: 0A Position: 77 (position.label in template: 77.C) Reactivity: 1C Position: 78 (position.label in template: 78.G) Reactivity: nanG Position: 79 (position.label in template: 79.U) Reactivity: nanU Position: 80 (position.label in template: 80.C) Reactivity: 0C Position: 81 (position.label in template: 81.A) Reactivity: 0A Position: 82 (position.label in template: 82.G) Reactivity: nanG Position: 83 (position.label in template: 83.C) Reactivity: 0C Position: 84 (position.label in template: 84.U) Reactivity: nanU Position: 85 (position.label in template: 85.G) Reactivity: nanG Position: 86 (position.label in template: 86.G) Reactivity: nanG Position: 87 (position.label in template: 87.C) Reactivity: 1C Position: 88 (position.label in template: 88.A) Reactivity: 0A Position: 89 (position.label in template: 89.G) Reactivity: nanG Position: 90 (position.label in template: 90.U) Reactivity: nanU Position: 91 (position.label in template: 91.G) Reactivity: nanG Position: 92 (position.label in template: 92.C) Reactivity: 0C Position: 93 (position.label in template: 93.U) Reactivity: nanU Position: 94 (position.label in template: 94.C) Reactivity: 0C Position: 95 (position.label in template: 95.C) Reactivity: 0C Position: 96 (position.label in template: 96.U) Reactivity: nanU Position: 97 (position.label in template: 97.G) Reactivity: nanG Position: 98 (position.label in template: 98.A) Reactivity: 0.5A Position: 99 (position.label in template: 99.A) Reactivity: 0A Position: 100 (position.label in template: 100.C) Reactivity: 0C Position: 101 (position.label in template: 101.C) Reactivity: 0C Position: 102 (position.label in template: 102.A) Reactivity: nanA Position: 103 (position.label in template: 103.C) Reactivity: nanC Position: 104 (position.label in template: 104.A) Reactivity: nanA Position: 105 (position.label in template: 105.G) Reactivity: nanG Position: 106 (position.label in template: 106.G) Reactivity: nanG Position: 107 (position.label in template: 107.A) Reactivity: nanA Position: 108 (position.label in template: 108.G) Reactivity: nanG Position: 109 (position.label in template: 109.A) Reactivity: nanA Position: 110 (position.label in template: 110.C) Reactivity: nanC Position: 111 (position.label in template: 111.G) Reactivity: nanG Position: 112 (position.label in template: 112.C) Reactivity: nanC Position: 113 (position.label in template: 113.G) Reactivity: nanG Position: 114 (position.label in template: 114.U) Reactivity: nanU Position: 115 (position.label in template: 115.A) Reactivity: nanA Position: 116 (position.label in template: 116.U) Reactivity: nanU Position: 117 (position.label in template: 117.G) Reactivity: nanG Position: 118 (position.label in template: 118.A) Reactivity: nanA Position: 119 (position.label in template: 119.A) Reactivity: nanA Position: 120 (position.label in template: 120.C) Reactivity: nanC Position: 121 (position.label in template: 121.C) Reactivity: nanC Position: 122 (position.label in template: 122.U) Reactivity: nanU Position: 123 (position.label in template: 123.G) Reactivity: nanG Position: 124 (position.label in template: 124.G) Reactivity: nanG Position: 125 (position.label in template: 125.U) Reactivity: nanU Position: 126 (position.label in template: 126.G) Reactivity: nanG Position: 127 (position.label in template: 127.G) Reactivity: nanG Position: 128 (position.label in template: 128.A) Reactivity: nanA Position: 129 (position.label in template: 129.U) Reactivity: nanU Position: 130 (position.label in template: 130.A) Reactivity: nanA Position: 131 (position.label in template: 131.3')3' 10 20 30 50 100


tisB



Position: 121-210, Conformation: #0







Retained alignments:


   NC_007712.1       ---------CGC.......CUAcgcc...............................ugcaa---...-..AUAGUGAUAACAGCAAGAAGCUGGCGACGACAGAGU--uuguggccaaagcacuugcggcGCUUGCUGGCAGCGCUCCUG..A.GACG.CUGGAUA...C.GC..UCAAAGAGCUGGCUGAUG
   NC_009792.1       UGUCAACAA---.......---........................................---...-..------A-AGGUGCUGACAACAGGCGGCGGAGAGGUAC......................GUCAGCACCGUGC-UCCUUU..U.ACCA.GAAGGAG...A.GC..GUAUGAGCCUCGUGGAUA
   NC_014963.1       UGUUACCAAGCC.......CUUcggacuu..........................ccugaau---ugg-ccGCGCGCAUGCGGGCUGGCGUGAGAC-------GGGUGC......................GCCAGCCCGAAGGA--AGCG..A.ACUU.GGC----...-.CC..GAUUGAGAUUGGGGAGUU
   NC_015968.1       CGUCA----A--.......---........................................---...-..-----UCCAGGUGCUGGCAACAGGCGGCGGAAAGGUAC......................GCCAGCAU--CGUGCUCCUUuuU.ACCAaAAGGAGA...C.GC..GUAUGAGCGUAGUGGAUA
   NC_017554.1       CGUCAGCACGGU.......UACgugcggugc.....................acaucaugca-UU...A..UCAACCUAAUCAGCCUGUUACAGGCAGCGGAAAGGGUC......................GCAGGCUGUAAGUGCUCCUG..-.ACCA.CAGGAGC...CaGC..GUAUGAG----GUGGAUA
   NC_021870.1       UGUCAACACGCA.......CAAuauucccc........................gcaaaagg---g.aU.gGCGUGCGCAACAGCUGACAACAGGCAGCGGAAAGGUAC......................GUUAGCUGGCAGUGCUCCUU..A.ACCA.CAGGAGA...C.GC..GUAUGAGCGUAGUGGAUA
   NZ_AP019007.1     CGUCA----A--.......---........................................---...-..-----UCCAGGUGCUGGCAACAGGCGGCGGAAAGGUAC......................GCCAGCAU--CGUGCUCCUUuuG.ACCAgAAGGAGA...C.GC..GUAUGAGCGUAGUGGAUA
   NZ_AP022508.1     CGUCA----A--.......---........................................---...-..-----UCCAGGUGCUGGCAACAGGCGGCGGAAAGGUAC......................GCCAGCAU--CGUGCUCCUUuuA.ACCAaAAGGAGA...C.GC..GUAUGAGCGUAGUGGAUA
   NZ_AP022547.1     CGUCAACAAAUAccccgaa---uuauugaguccgccaccg....gcagguggcgccugaaua-UG...A.cGGGUAUACCCUGGCUGGCAACAGGCGGCGGAAAGGUAC......................GCCAGCCGGUUGUGCUCCUG..A.ACCA.GAGGAGA...C.GC..GUAUGGGCGGAGUGGAUA
   NZ_AP023184.1     -----------U.......AGU........................................AA-..cC..UCAACAAAUUCAGUUGGCUACAGGCAGCGGAAAGGCUC......................GUCGGCUGAAAGUGCUCCUG..-.ACUA.CAGGAGAaaaA.GC..GUAUGGGCUUGAUGGGAC
   NZ_CP012257.1     ------------.......GUG........................................UUA...C..GCCAACAAAACAACUGGCAACAGGCAGCGGAGAGGUAC......................GCCAGUUG---GUGCUCCUU..U.ACCA.GAGGAGA...C.GC..GUAUGAGCGGAGUGGAUU
   NZ_CP012264.1     ------------.......GUG........................................UUA...C..GCCAACAAAACAACUGGCAACAGGCAGCGGAGAGGUAC......................GCCAGUUG---GUGCUCCUU..U.ACCA.GAGGAGA...C.GC..GUAUGAGCGGAGUGGAUC
   NZ_CP013990.1     CGUCAACAA---.......---........................................---...-..------A--GGUGCUGGUCACAGGCGGCGGAAAGGUAC......................GCCAGCAU--CGUGCUCCUU..A.ACCA.GAGGAGA...C.GC..GUAUGAGCGUAGUGGAUA
   NZ_CP014070.2     UGUCAACAA---.......---........................................---...-..------A--GGUGCUGAUAACAGGCGGCGGAAAGGCAC......................GUCAGCAC--CGUGCUCCUU..U.GCUA.AAGGAGA...C.GC..GUAUGAGCCUCGUGGAUA
   NZ_CP017279.1     CGUCA----A--.......---........................................---...-..-----UCCAGGUGCUGGUCACAGGCGGCGGAAAGGUAC......................GCCAGCAU--CGUGCUCCUUuuA.ACCAaAAGGAGA...C.GC..GUAUGAGCGUAGUGGAUA
   NZ_CP027986.1     CGUCA----A--.......---........................................---...-..-----UCCAGGUGCUGGCCACAGGCGGCGGAAAGGUAC......................GCCAGCAU--CGUGCUCCUUuuA.ACCAaAAGGAGA...C.GC..GUAUGAGCGUAGUGGAUA
   NZ_CP033844.1     CGUCAACAAAUAccccgaa---ucauuuagcccgcaaccc...acuggucgcgccugaauga-UG...A.cGGGUAUACCCUGGCUGGCAACAGGCGGCGGAAAGGCAC......................GCCAGCCGGUUGUGCUCCUG..A.ACCA.GAGGAGA...C.GC..GUAUGGGCGGAGUGGAUA
   NZ_CP036175.1     CGUCAACAAAUAccc.uga---gcaauuugggucguagccg..acaggccgcgccugaaaua-UG...A.cGGGUAUACCCUGGCUGGCAACAGGCGGCGGAAAGGUAC......................GCCAGCCGGUCGUGCUCCUG..A.ACCA.GAGGAGA...C.GC..GUAUGGGCGGAGUGGAUA
   NZ_CP037864.1     UGUCAACAA---.......---........................................---...-..------A--GGUGCUGGCAACAGGCAGCGGCGAGGUAC......................GUCAGCACCGUGC-UCCUUG..U.ACCG.AAAGGAG...A.GC..GUAUGAGCCUCGUGGAUA
   NZ_CP038469.1     UGUCAACAA---.......---........................................---...-..------A--GAUGCUGGCAACAGGCAGCGGCGAGGUAC......................GCCAGCAUCGUGC-UCCUUG..U.ACCA.AAAGGAG...A.GC..GUAUGAGCCUCGUGGAUA
   NZ_CP041247.1     CGUCAACAAAUAcg...cu---aaugccugucagccac.......ggcaacgugucccggca-GG...-cgGCGUAUAUCCUGGCUGGCAACAGGCGGCGGAAAGGUAC......................GCCAGCCGGUCGUGCUCCUG..U.ACCA.GGGGAGA...C.GC..GUAUGGGUGCCGUGGAUA
   NZ_CP041925.1     CGUCAACAA-UGcg...uc---guguccggcccguacggccaccacugcgcaaccccuguga---...-..GAACAGGGAUAAGCUGGCAACAGGCAGCGGAAAGGUAC......................GUCAGCUUAUUGUGCUCCUU..A.ACCA.CAGGAGA...C.GCgcGUAUGGGCGGAAUGGAUA
   NZ_CP043318.1     CGUCA----A--.......---........................................---...-..-----UCCAGGUGCUGGCAACAGGCGGCGGAAAGGUAC......................GCCAGCAU--CGUGCUCCUUuuU.ACCAaAAGGAGA...C.GC..GUAUGAGCAUCGUGGAUA
   NZ_CP043342.1     CGUCA----A--.......---........................................---...-..-----UCCAGGUGCUGGCCACAGGCGGCGGAAAGGUUC......................GCCAGCAU--CGUGCUCCUUuuA.ACCAaAAGGAGA...C.GC..GUAUGGGCGUCGUGGAUA
   NZ_CP044101.1     UGUCAACAA---.......---........................................---...-..------A--GGUGCUGGCAACAGGCAGCGGCGAGGUAC......................GCCAGCACCGUGC-UCCUUG..U.ACCA.AAAGGAG...A.GC..GUAUGAGCCUCGUGGAUA
   NZ_CP049115.1     ------------.......-GC........................................AUU...A..UCAACCUAAUCAGCCUGUUACAGGCAGCGGAAAGGUAC......................GCAGGCUGUAAGUGCUCCUG..-.ACCA.CAGGAGC...CaGC..GUAUGAGAUGGAUAGAAA
   NZ_CP049608.1     ----------GU.......GUU........................................ACG...-..CCAACAAAAGCUGCUGGCAACAGGCAACGGAAAGGUAC......................GUCAGCGG--CGUGCUCCUU..G.ACCA.GAGGAGA...C.GC..GUAUGAGCGGAAUGGAUU
   NZ_CP050150.1     ACUCAAGGA---agc.acg---uuag................................uauu---...-.uUUCAACAAUCCGAUGGCUGAUAGGCAGCGGAAAGGCAA......................AGCCAUCGUUAGUGCUCCUG..A.C---.UAGGAGA..gA.GC..GUAUGAAAUUUCUAGAAC
   NZ_CP050508.1     CGUCAACAAAUAcg...cu---aaugucuuccgggcac.......ggcaacguguucaggca-GG...-cgGCGUAGACCCUGGCUGGCAACAGGCGGCGGAAAGGUAC......................GCCAGCCGGCUGUGCUCCUU..U.ACC-.GAGGAGA...C.GC..GUAUGGGCACGAUGGAUA
   NZ_CP054058.1     ---------GUG.......---........................................UUA...C..GUCAACAACACGGCUGAUGACAGGCAGCGGAAAGGUAA......................AUCAGCCGGAAGUUCUCCUU..AcACUA.CAGGAGA...A.AC..GUAUGGGUGGAAUGGAAC
   NZ_CP055055.1     UGUCAACAAGCA.......CAAcguuucu..........................ccuugagAUA...C.cGCGUGCACAACAGCUGGCAACAGGCAGCGGAAAGGUAC......................GUCAGCUGGCAGUGCUCCUG..A.ACCA.CAGGAGA...C.GC..GUAUGAGCCUGGUGGAUA
   NZ_CP055292.1     UGUCAACAAGCA.......CAAcguuucu..........................ccuuaagAUA...C.cGCGUGCACAACAGCUGGCAACAGGCAGCGGAAAGGUAC......................GUCAGCUGGCAGUGCUCCUG..A.ACCA.CAGGAGA...C.GC..GUAUGAGCCUGGUGGAUA
   NZ_CP071070.1     UGUCAACGA---.......---........................................---...-..------A--GGUGCUGGCAACAGGCGGCGGAAAGGCAC......................GUCAGCAC--CGUGCUCCUU.uU.ACCAuAAGGAGA...C.GC..GUAUGAGCCUCGUGGAUA
   NZ_CP071383.1     CGUCA----A--.......---........................................---...-..-----UCCAGGUGCUGGUAACAGGCGGCGGAAAGGUAC......................GCCAGCAU--CGUGCUCCUUuuU.ACCAaAAGGAGA...C.GC..GUAUGAGCGUAGUGGAUA
   NZ_CP073236.1     CGUCAACAAAUAccccgaa---uuauugaguccgccaccg....gcagguggcgucugaaua-UG...A.cGGGUAUACCCUGGCUGGCAACAGGCGGCGGAAAGGUAC......................GCCAGCCGGUUGUGCUCCUG..A.ACCA.GAGGAGA...C.GC..GUAUGGGCGGAGUGGAUA
   NZ_CP074352.1     ------------.......GUG........................................UUA...C..GCCAACAAAACAGCUGGUUACAGGCGGCGGAGAGGUAA......................GCCAGCUG---GUGCUCCUU..U.ACCU.GAGGAGA...C.GC..GUAUGGGCGGAGUGGAUU
   NZ_CP077262.1     UGUCAACAA---.......---........................................---...-..------A--GGUGCUGGCAACAGGCAGCGGCGAGGUAC......................GUCAGCACCGUGC-UCCUUG..U.ACCA.AAAGGAG...A.GC..GUAUGAGCCUCGUGGAUA
   NZ_CP077392.1     CGUCA----A--.......---........................................---...-..-----UCCAGGUGCUGGCCACAGGCGGCGGAAAGGUAC......................GCCAGCAU--CGUGCUCCUUuuA.ACCAaAAGGAGA...C.GC..GUAUGAGCGUCGUGGAUA
   NZ_CP082833.1     UGUCAACAA---.......---........................................---...-..------A--GGUGCUGGCAACAGGCGGCGGAAAGGCAC......................GUCAGCAC--CGUGCUCCUU.uU.ACCA.GAGGAGA...C.GC..GUAUGAGCCUCGUGGAUA
   NZ_CP083638.1     UGUCAACAAGCA.......CAAcguuucu..........................ccuugagAUA...C.cGCGUGCACAACAGCUGACAACAGGCAGCGGAUAGGUAC......................GUCAGCUGGCAGUGCUCCUG..A.ACCA.CAGGAGA...C.GC..GUAUGAGCCUGGUGGAUA
   NZ_CP083737.1     ACUCAAGGA---agc.acg---uuag................................uguu---...-.uUUCAACAAUCCGAUGGCUGAUAGGCAGCGGAAAGGCAA......................AGCCAUCGUUAGUGCUCCUU..A.CUCG.G-AGAGA...-.GC..GUAUGAAAUUUCUUGAAC
   NZ_CP089932.1     ---CUCCCACGCc....ug---c.....................................gaA--...-..-UAGUGAUAACAGCAAGAAGCUGGCAACGACAGAGU--uuguggccaaagcacuugcggcGCUUGCAGGCAGCGCCCCUG..A.GACG.CUGGAUA...C.GC..UCAAAGAGCUGGCGGAUG
   NZ_CP093334.1     CGUCAACAAAUAcg...cu---aaugucuucugggcac.......ggcaacgugucccgguaGU-...-cgGCGUAUACCCUGGCUGGCAACAGGCGGCGGAAAGGUAC......................GCCAGCCGGUCGUGCUCCUG..U.ACCA.GAGGAGA...C.GC..GUAUGGGUGCCAUGGAUA
   NZ_CP100494.1     ------------.......GUG........................................UUA...C..GCCAACAAAGCUGCUGGCAACAGGCAACGGAAAGGUAC......................GUCAGCGG--CGUGCUCCUU..G.ACCA.GAGGAGA...C.GC..GUAUGAGCGGAAUGGAUU
   NZ_CP107077.1     ------------.......GCG........................................UUA...C..GCCAACAACACGGCUGAUAACAGGCAGCGGAAAGGUAA......................GUCAGCCG---GUGCUCCUU..U.ACCU.GAGGAGA...U.GC..GUAUGGGCCAGACGGAGA
   NZ_LR134485.1     CGUCAACAA---.......---........................................---...-..------A--GGUGCUGGCAACAGGCAGCGGCGAGGUAC......................GCCAGCACCGUGC-UCCUUG..U.ACCA.AAAGGAG...A.GC..GUAUGAGCCUCGUGGAUA


   Structure         ((((.((..(((..............................................................)))....((((((((..........................................))))))))...(((((((((.........))))))....).)).............)).))))


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tisB



Position: 121-210, Conformation: #0







97% 90% 75% 50% Nucleotide present N N N Nucleotide identify E < 0.1 Base-pair covariation E < 0.05 Helix-level covariation 97% 90% 75%

A R G C Y G R Y R A C A G G C R G C G G A A A G G U R G Y C R G C G Y G C U C C U A C C R R G G A R A G C G U A U G R G R U G G A 5'