tig



Position: 532-666, Conformation: #0







DMS reactivity > 1.0 0.0 0.4 0.7 G/U/No data
Position: 0 (position.label in template: 0.5')5' Position: 1 (position.label in template: 1.U) Reactivity: nanU Position: 2 (position.label in template: 2.U) Reactivity: nanU Position: 3 (position.label in template: 3.G) Reactivity: nanG Position: 4 (position.label in template: 4.A) Reactivity: nanA Position: 5 (position.label in template: 5.A) Reactivity: nanA Position: 6 (position.label in template: 6.A) Reactivity: nanA Position: 7 (position.label in template: 7.A) Reactivity: nanA Position: 8 (position.label in template: 8.A) Reactivity: nanA Position: 9 (position.label in template: 9.C) Reactivity: nanC Position: 10 (position.label in template: 10.C) Reactivity: nanC Position: 11 (position.label in template: 11.G) Reactivity: nanG Position: 12 (position.label in template: 12.A) Reactivity: nanA Position: 13 (position.label in template: 13.U) Reactivity: nanU Position: 14 (position.label in template: 14.C) Reactivity: nanC Position: 15 (position.label in template: 15.G) Reactivity: nanG Position: 16 (position.label in template: 16.U) Reactivity: nanU Position: 17 (position.label in template: 17.U) Reactivity: nanU Position: 18 (position.label in template: 18.G) Reactivity: nanG Position: 19 (position.label in template: 19.A) Reactivity: nanA Position: 20 (position.label in template: 20.A) Reactivity: nanA Position: 21 (position.label in template: 21.G) Reactivity: nanG Position: 22 (position.label in template: 22.U) Reactivity: nanU Position: 23 (position.label in template: 23.G) Reactivity: nanG Position: 24 (position.label in template: 24.A) Reactivity: nanA Position: 25 (position.label in template: 25.C) Reactivity: nanC Position: 26 (position.label in template: 26.C) Reactivity: nanC Position: 27 (position.label in template: 27.G) Reactivity: nanG Position: 28 (position.label in template: 28.A) Reactivity: nanA Position: 29 (position.label in template: 29.C) Reactivity: nanC Position: 30 (position.label in template: 30.G) Reactivity: nanG Position: 31 (position.label in template: 31.C) Reactivity: nanC Position: 32 (position.label in template: 32.U) Reactivity: nanU Position: 33 (position.label in template: 33.G) Reactivity: nanG Position: 34 (position.label in template: 34.A) Reactivity: nanA Position: 35 (position.label in template: 35.C) Reactivity: 1C Position: 36 (position.label in template: 36.G) Reactivity: nanG Position: 37 (position.label in template: 37.U) Reactivity: nanU Position: 38 (position.label in template: 38.U) Reactivity: nanU Position: 39 (position.label in template: 39.G) Reactivity: nanG Position: 40 (position.label in template: 40.A) Reactivity: 1A Position: 41 (position.label in template: 41.C) Reactivity: 0C Position: 42 (position.label in template: 42.G) Reactivity: nanG Position: 43 (position.label in template: 43.G) Reactivity: nanG Position: 44 (position.label in template: 44.C) Reactivity: 1C Position: 45 (position.label in template: 45.A) Reactivity: 0A Position: 46 (position.label in template: 46.U) Reactivity: nanU Position: 47 (position.label in template: 47.G) Reactivity: nanG Position: 48 (position.label in template: 48.C) Reactivity: 1C Position: 49 (position.label in template: 49.U) Reactivity: nanU Position: 50 (position.label in template: 50.G) Reactivity: nanG Position: 51 (position.label in template: 51.G) Reactivity: nanG Position: 52 (position.label in template: 52.A) Reactivity: 1A Position: 53 (position.label in template: 53.U) Reactivity: nanU Position: 54 (position.label in template: 54.A) Reactivity: 0.5A Position: 55 (position.label in template: 55.C) Reactivity: 0C Position: 56 (position.label in template: 56.U) Reactivity: nanU Position: 57 (position.label in template: 57.C) Reactivity: 0.5C Position: 58 (position.label in template: 58.U) Reactivity: nanU Position: 59 (position.label in template: 59.G) Reactivity: nanG Position: 60 (position.label in template: 60.C) Reactivity: 0.5C Position: 61 (position.label in template: 61.G) Reactivity: nanG Position: 62 (position.label in template: 62.U) Reactivity: nanU Position: 63 (position.label in template: 63.A) Reactivity: 1A Position: 64 (position.label in template: 64.A) Reactivity: 0A Position: 65 (position.label in template: 65.A) Reactivity: 1A Position: 66 (position.label in template: 66.C) Reactivity: 0C Position: 67 (position.label in template: 67.A) Reactivity: 0A Position: 68 (position.label in template: 68.G) Reactivity: nanG Position: 69 (position.label in template: 69.C) Reactivity: 0C Position: 70 (position.label in template: 70.A) Reactivity: 0A Position: 71 (position.label in template: 71.G) Reactivity: nanG Position: 72 (position.label in template: 72.G) Reactivity: nanG Position: 73 (position.label in template: 73.C) Reactivity: 0C Position: 74 (position.label in template: 74.G) Reactivity: nanG Position: 75 (position.label in template: 75.A) Reactivity: 0A Position: 76 (position.label in template: 76.C) Reactivity: 0C Position: 77 (position.label in template: 77.C) Reactivity: 0.5C Position: 78 (position.label in template: 78.U) Reactivity: nanU Position: 79 (position.label in template: 79.G) Reactivity: nanG Position: 80 (position.label in template: 80.G) Reactivity: nanG Position: 81 (position.label in template: 81.A) Reactivity: 0A Position: 82 (position.label in template: 82.A) Reactivity: 1A Position: 83 (position.label in template: 83.A) Reactivity: 1A Position: 84 (position.label in template: 84.G) Reactivity: nanG Position: 85 (position.label in template: 85.A) Reactivity: 0A Position: 86 (position.label in template: 86.A) Reactivity: 0.5A Position: 87 (position.label in template: 87.A) Reactivity: 0.5A Position: 88 (position.label in template: 88.A) Reactivity: 1A Position: 89 (position.label in template: 89.A) Reactivity: 0A Position: 90 (position.label in template: 90.G) Reactivity: nanG Position: 91 (position.label in template: 91.A) Reactivity: 1A Position: 92 (position.label in template: 92.C) Reactivity: 0.5C Position: 93 (position.label in template: 93.G) Reactivity: nanG Position: 94 (position.label in template: 94.G) Reactivity: nanG Position: 95 (position.label in template: 95.C) Reactivity: 0C Position: 96 (position.label in template: 96.G) Reactivity: nanG Position: 97 (position.label in template: 97.C) Reactivity: 0C Position: 98 (position.label in template: 98.U) Reactivity: nanU Position: 99 (position.label in template: 99.G) Reactivity: nanG Position: 100 (position.label in template: 100.U) Reactivity: nanU Position: 101 (position.label in template: 101.U) Reactivity: nanU Position: 102 (position.label in template: 102.G) Reactivity: nanG Position: 103 (position.label in template: 103.A) Reactivity: 1A Position: 104 (position.label in template: 104.A) Reactivity: 1A Position: 105 (position.label in template: 105.G) Reactivity: nanG Position: 106 (position.label in template: 106.C) Reactivity: 0C Position: 107 (position.label in template: 107.A) Reactivity: 0.5A Position: 108 (position.label in template: 108.G) Reactivity: nanG Position: 109 (position.label in template: 109.A) Reactivity: 1A Position: 110 (position.label in template: 110.A) Reactivity: 0A Position: 111 (position.label in template: 111.G) Reactivity: nanG Position: 112 (position.label in template: 112.A) Reactivity: 0A Position: 113 (position.label in template: 113.C) Reactivity: 0.5C Position: 114 (position.label in template: 114.C) Reactivity: 0.5C Position: 115 (position.label in template: 115.G) Reactivity: nanG Position: 116 (position.label in template: 116.C) Reactivity: 0C Position: 117 (position.label in template: 117.G) Reactivity: nanG Position: 118 (position.label in template: 118.U) Reactivity: nanU Position: 119 (position.label in template: 119.A) Reactivity: 1A Position: 120 (position.label in template: 120.A) Reactivity: 1A Position: 121 (position.label in template: 121.C) Reactivity: 0.5C Position: 122 (position.label in template: 122.C) Reactivity: 0.5C Position: 123 (position.label in template: 123.A) Reactivity: 1A Position: 124 (position.label in template: 124.U) Reactivity: nanU Position: 125 (position.label in template: 125.C) Reactivity: 0C Position: 126 (position.label in template: 126.G) Reactivity: nanG Position: 127 (position.label in template: 127.A) Reactivity: 1A Position: 128 (position.label in template: 128.C) Reactivity: 0C Position: 129 (position.label in template: 129.U) Reactivity: nanU Position: 130 (position.label in template: 130.U) Reactivity: nanU Position: 131 (position.label in template: 131.C) Reactivity: 0C Position: 132 (position.label in template: 132.A) Reactivity: 0A Position: 133 (position.label in template: 133.C) Reactivity: 0.5C Position: 134 (position.label in template: 134.C) Reactivity: 0C Position: 135 (position.label in template: 135.G) Reactivity: nanG Position: 136 (position.label in template: 136.G) Reactivity: nanG Position: 137 (position.label in template: 137.U) Reactivity: nanU Position: 138 (position.label in template: 138.U) Reactivity: nanU Position: 139 (position.label in template: 139.C) Reactivity: 0.5C Position: 140 (position.label in template: 140.U) Reactivity: nanU Position: 141 (position.label in template: 141.G) Reactivity: nanG Position: 142 (position.label in template: 142.U) Reactivity: nanU Position: 143 (position.label in template: 143.A) Reactivity: nanA Position: 144 (position.label in template: 144.G) Reactivity: nanG Position: 145 (position.label in template: 145.A) Reactivity: nanA Position: 146 (position.label in template: 146.C) Reactivity: nanC Position: 147 (position.label in template: 147.G) Reactivity: nanG Position: 148 (position.label in template: 148.G) Reactivity: nanG Position: 149 (position.label in template: 149.C) Reactivity: nanC Position: 150 (position.label in template: 150.G) Reactivity: nanG Position: 151 (position.label in template: 151.A) Reactivity: nanA Position: 152 (position.label in template: 152.A) Reactivity: nanA Position: 153 (position.label in template: 153.G) Reactivity: nanG Position: 154 (position.label in template: 154.A) Reactivity: nanA Position: 155 (position.label in template: 155.G) Reactivity: nanG Position: 156 (position.label in template: 156.U) Reactivity: nanU Position: 157 (position.label in template: 157.U) Reactivity: nanU Position: 158 (position.label in template: 158.C) Reactivity: nanC Position: 159 (position.label in template: 159.G) Reactivity: nanG Position: 160 (position.label in template: 160.A) Reactivity: nanA Position: 161 (position.label in template: 161.A) Reactivity: nanA Position: 162 (position.label in template: 162.G) Reactivity: nanG Position: 163 (position.label in template: 163.G) Reactivity: nanG Position: 164 (position.label in template: 164.C) Reactivity: nanC Position: 165 (position.label in template: 165.G) Reactivity: nanG Position: 166 (position.label in template: 166.G) Reactivity: nanG Position: 167 (position.label in template: 167.U) Reactivity: nanU Position: 168 (position.label in template: 168.A) Reactivity: nanA Position: 169 (position.label in template: 169.A) Reactivity: nanA Position: 170 (position.label in template: 170.A) Reactivity: nanA Position: 171 (position.label in template: 171.G) Reactivity: nanG Position: 172 (position.label in template: 172.C) Reactivity: nanC Position: 173 (position.label in template: 173.G) Reactivity: nanG Position: 174 (position.label in template: 174.U) Reactivity: nanU Position: 175 (position.label in template: 175.C) Reactivity: nanC Position: 176 (position.label in template: 176.3')3' 10 20 30 50 100 150


tig



Position: 532-666, Conformation: #0







Retained alignments:


   NC_003910.7       UCC.A......G...AA....G.....U.U.G.A.C........GUGACUGAU..G...CC.GA....................................U..UU.AGA..UG..A.AA.UG.UUUGU....U.A...C.G.CU......A.CAA..AA...GC..A.AC..A.U..C.A.A....A.CA.....UG.G....A.....A..A.......G.A...A..A...A.CAA..A.................................................................................CG...U.A....A.A..AC.U.AA.AU.C......A......G.G...C.....G...AU...A............................................................AA......U......U......AAC......ACUUGAUUUCACUG..GUCGU.GUA..G..A..........................................................CGGUGAAGAG...UUUGA.A...GGUGGU
   NC_004347.2       GCC.Aa....aA...GC....G.....U.C.-.-.A........GUGACGGAU..G...CU.GA....................................U..GU.GGA..CA..G.CA.UG.AUUGA....A.A...C.G.CU......G.CGC..AA...GC..A.AC..A.U..G.C.C....A.CU.....--.-....-.....-..-.......-.-...-..-...-.---..-uuugcagcgg..........................................................uugagcguga...AG...C.G....-.-..GU.U.GA.U-.-......-......G.G...C.....G...AC...A............................................................AA......G......U......GAA......AAUGAACUUUGUGG..GCUCA.GUU..G..A..........................................................CGGUGUUGAA...UUCGA.A...GGCGGU
   NC_004603.1       GCC.U......C...UA....A.....C.U.G.A.A........GUUAAAGAA..G...CA.GA....................................C..GU.AGA..AG..A.GA.UG.AUCGA....A.A...C.U.CU......A.CGU..AA...GC..A.AC..A.A..G.C.A....A.CU.....UG.G....G.....U..U.......G.A...A..G...U.UGA..A.................................................................................GA...A.G....C.A..GC.A.GA.AG.C......U......G.G...C.....A...AA...C............................................................GC......G......U......AAG......CAUCGAUUUCGUUG..GUUCU.AUC..G..A..........................................................CGGCGAAGAG...UUUGA.A...GGCGGU
   NC_004757.1       ACCuG......U...UC....U.....G.C.A.G.A........UUGG-GGAU..G...CA.GA....................................A..AU.CCA..GA..A.AA.CA.CUGGA....U.A...U.U.CU......G.CGU..AA...AC..A.GC..G.G..G.C.A....A.CU.....UA.U....G.....A..G.......C.C...G..A...C.AGA..U.................................................................................CG...U.C....C.G..GC.A.CA.AA.C......A......G.G...U.....G...AU...C............................................................GG......G......U......CAC......AAUUGAUUAUAGAG..GGGUU.CUC..G..A..........................................................UGGAGAAGGA...UUUCC.C...GGCGGU
   NC_005126.1       GCC.C......G...UU....G.....U.U.G.A.A........GUAAAAGAC..G...AA.GA....................................U..GU.UGA..UG..C.AA.UG.CUGGA....A.A...C.A.UU......G.CGU..AA...GC..A.GC..A.G..G.C.U....A.AU.....UG.G....A.....A..A.......G.A...A..A...C.CGA..A.................................................................................GA...A.G....C.U..GU.U.GG.UG.C......A......G.A...A.....G...AU...C............................................................GU......G......U......GAC......UGUUGACUUCAAUG..GUUCU.GUU..G..A..........................................................UGGUGAAGAG...UUCGA.A...GGUGGU
   NC_006177.1       GCA.G......G...UC....C.....C.G.G.A.G........GUCACCGAC..C...AG.GA....................................G..GU.CGA..GG..A.AC.AG.CUGAG....C.G...C.C.CU......G.CGG..GA...GC..G.GC..U.G..G.C.C....A.CC.....C-.-....-.....-..-.......-.-...-..-...-.---..-ucgugacc.............................................................gacgagucc...GG...G.G....A.G..GU.C.GG.CC.A......G......G.G...C.....A...GC...U............................................................UC......G......C......CGU......CAUCGACUUCGAAG..GGUUC.AUU..G..A..........................................................CGGCGAGCCC...UUC--.-...------
   NC_006300.1       ACC.U......G...UA....G.....U.U.G.A.A........AUCACUGAU..G...CC.GA....................................U..GU.GGA..CA..A.CA.UG.GUUGA....A.G...U.G.UU......A.CGC..AA...AC..A.AC..A.A..G.C.G....A.CU.....UG.G....G.....C..U.......G.A...A..A...C.GGA..C.................................................................................AA...U.G....C.G..GC.G.AC.UA.A......A......G.A...C.....G...AU...C............................................................GU......G......U......AAC......UAUCGAUUUCGUCG..GUUCU.AUC..G..A..........................................................CGGUGAAGAA...UUCCA.G...GGCGGC
   NC_006512.1       GCC.U......G...CU....G.....U.U.G.A.A........GUCACUGAG..A...AA.GA....................................C..GU.CGA..CA..A.CA.UG.CUGGA....A.A...C.G.UU......G.CAG..AA...AC..A.AC..A.U..G.C.U....G.AC.....UG.G....A.....A..A.......G.A...A..G...UuAAG..C.................................................................................GU...A.A....A.U..CC.-.AA.AA.A......G......G.G...U.....G...AC...C............................................................GU......G......U......CAC......UAUGGAUUUCGUUG..GUUCU.AUU..G..A..........................................................CGGUGAAGAA...UUUGA.A...GGCGGU
   NC_007481.1       ACC.A......G...CC....G.....U.A.A.C.A........GUAACUGAC..G...AA.GA....................................U..UU.AGC..UA..A.CA.UG.CUAGA....A.A...C.A.CU......U.CGU..AA...GC..A.AC..A.C..G.C.A....G.AC.....UG.G....G.....C..U.......G.A...A..G...U.UGA..U.................................................................................AC...A.G....C.U..GC.U.GG.CG.A......A......A.A...C.....G...AC...C............................................................GU......G......U......AAC......GGUUGAUUUUGUAG..GUACU.AUC..G..A..........................................................CGGUGAAGUA...UUUGA.A...GGCGGC
   NC_007645.1       AGA.A......G...AC....U.....U.U.G.A.A........AUCGUUGAU..G...CC.GA....................................U..GU.AGA..CA..G.CA.UG.AUCGA....A.A...A.A.CU......G.CGU..--...-C..A.GC..A.G..U.C.U....U.-Cug.aaUG.G....A.....A..A.......G.A...C..AgcgA.AGA..C.................................................................................GC...A.G....C.U..GC.U.GA.G-.-......-......G.G...C.....G...AC...C............................................................GU......C......U......GAC......UAUCGACUUCAAAG..GCAUG.AUU..G..A..........................................................UGGCGAAGCG...UUCGA.A...GGCGGU
   NC_007712.1       ACC.G......C...GC....G.....U.A.G.A.A........GUGAAAGAC..G...CC.GA....................................C..GU.CGA..CA..C.CA.UG.CUGGA....U.A...C.G.CU......G.CAA..AA...AC..A.GC..A.G..G.C.C....G.AC.....UG.G....A.....A..A.......G.A...A..A...C.CAC..G.................................................................................GA...U.G....C.C..GC.C.GG.CG.C......G......G.A...A.....G...AC...C............................................................GC......G......U......CAC......CGUCGACUUCACGG..GUACC.AUU..G..A..........................................................CGGCGAAGCG...UUUGA.C...GGCGGC
   NC_007912.1       GCU.A.....cA...AC....G.....C.A.G.A.A........GUUACCGAU..G...CA.GA....................................C..GU.AGA..UA..C.CA.UG.AUCGA....G.A...C.U.CU......G.CAA..AA...GA..G.UC..A.G..-.-.-....-.--.....--.-....-.....-..-.......-.-...-..-...-.---..-.............................................................................g...--...-.-....C.U..GA.U.UG.GG.C......-......-.-...-.....-...--...-gccaguuaagcgcaaa.........................ucuaaaaaaggcgauc...GC......G......U......AGU......UAUCGACUUUAAAG..GCACC.AAA..G..A..........................................................UGGCGAAGCC...UUCGA.A...GGUGGC
   NC_007954.1       GCC.U......A...AA....G.....C.U.G.A.A........GUUAACGAU..G...CC.GA....................................U..UU.AGA..UG..C.AA.UG.AUUGA....A.A...C.A.CU......U.CGU..AA...GC..A.GC..A.U..G.-.-....-.--.....--.-....-.....-..-.......-.-...-..-...-.---..-caaccuuugccgu...................................................uguugagcgcgcaa...--...-.-....G.U..GC.U.GC.A-.-......-......G.G...C.....G...AC...A............................................................AA......G......U......GAA......AAUGAAUUUUGUUG..GUUCA.AUC..G..A..........................................................UGGUGAAGAG...UUUGA.C...GGUGGC
   NC_007964.1       GCC.G......G...UG....G.....U.C.G.A.U........GUCUCCGAU..G...CC.GA....................................C..GU.CGA..CG..-.--.--.-----....-.-...-.-.--......-.---..--...--..-.--..-.-..-.-.-....-.--.....--.-....-.....-..-.......-.-...-..-...-.---..-aggccaucaagcggaucgcagaucagaaccgcagcuacuccgccagggcggagggcgcaaaggccgagaauggcgauc...--...-.-....-.-..--.-.--.--.-......-......-.-...-.....-...--...-............................................................GC......G......U......CAC......UAUCUCGUUCAAGG..GCACC.AUC..G..A..........................................................CGGCGAGUUG...UUCGA.G...GCCGGC
   NC_008027.1       CCU.G......A...GC....G.....C.C.G.A.A........GUUGCUGAC..G...CC.GA....................................C..CU.GGA..CA..A.CA.UG.CUGGA....A.G...U.C.CU......G.CGC..AA...GC..-.--..-.-..-.-.-....-.--.....--.-....-.....-..-.......-.-...-..-...-.---..-agaacacccguuucgagg.........................................ccgucgagcgcgcugcugc...--...-.-....-.-..--.-.GA.A-.-......C......G.A...C.....G...AC...C............................................................AG......G......U......CAA......CAUCGACUUCGUCG..GCAAG.AUC..G..A..........................................................CGGUGAAGCC...UUUGC.C...GGCGGC
   NC_008260.1       GCC.C......-...-C...aG.....UcU.G.A.A........GUUACCGAU..G...CU.GA....................................U..GU.GGA..UA..C.UA.UG.AUCGA....A.A...C.G.CU......G.CGU..CA...GC..A.GC..G.-..-.-.-....-.--.....--.-....-.....-..-.......-.-...-..-...-.---..-cgcu.....................................................................gaguu...--...-.-....-.U..GC.U.GA.UG.U......A......G.A...-.....-...--...-ucgcgccagug..................................agaucggcgacc...GC......G......U......UAA......UAUUGAUUUUAAAG..GCCUG.AAG..G..A..........................................................CGGCGAAGCC...UUUGA.G...GGUGGC
   NC_008345.1       GCC.U......A...AA....G.....C.U.G.A.A........GUUAAUGAU..G...CU.GA....................................C..GU.UGA..UG..U.UA.UG.AUUGA....A.A...C.A.UU......A.CGU..AA...AC..A.AC..A.U..G.-.-....-.--.....--.-....-.....-..-.......-.-...-..-...-.---..-caacuuuugcaccug...............................................uugaacgugcagcagu...--...-.-....-.U..GC.U.GA.C-.-......-......-.-...-.....G...AU...A............................................................AA......G......U......UAA......AAUGAACUUUAUUG..GUUCU.AUU..G..A..........................................................UGGCGAAGAA...UUCGA.A...GGCGGA
   NC_008700.1       GCC.A......A...AA....G.....C.U.G.A.U........GUGACCGAU..G...CU.GA....................................C..GU.AGA..CA..G.CA.UG.AUCGA....A.A...C.C.CU......G.CGC..AA...GC..A.AC..A.U..G.C.U....A.C-.....--.-....-.....-..-.......-.-...-..-...-.---..-cuucgacg.............................................................ccgccccgc...-G...C.G....C.U..GC.U.GA.AG.A......A......G.G...C.....G...AC...A............................................................AA......G......U......CGU......UAUCAACUUUGUUG..GCAGC.GUA..G..A..........................................................CGGAGAAGAG...UUCCA.G...GGUGGC
   NC_008709.1       AGA.U......U...CU....G.....C.A.G.A.A........GUCACUGAU..G...CU.GA....................................U..CU.GGA..UA..A.AA.UG.AUUGA....G.A...C.G.CU......G.CGU..AA...GC..A.AC..A.U..G.C.A....G.AA.....UG.G....A.....A..U.......G.C...G..G...U.UGA..A.................................................................................CG...U.G....A.A..GC.U.GC.AA.A......U......G.A...U.....G...AC...C............................................................AG......G......U......AAC......ACUUGAUUUUGAAG..GCUCU.AUU..G..A..........................................................UGGUGAAGUA...UUCGA.A...GGCGGA
   NC_009092.1       ACC.A......A...CU....G.....C.C.G.A.A........GUUACCGAU..G...CU.GA....................................C..GU.UGA..UG..C.AA.UG.AUCGA....A.A...C.G.CU......G.CGC..AA...GC..A.AC..A.C..G.C.U....A.CG.....UU.C....G.....A..A.......G.C...G..G...U.UGA..G.................................................................................CG...U.G....A.A..GC.U.GC.CG.A......A......G.G...C.....G...AC...A............................................................AG......G......C......GAA......GAUCGACUUCGUUG..GUUCU.AUC..G..A..........................................................CGGUGAAGAG...UUCGA.A...GGCGGC
   NC_009253.1       GGC.U......U...CC....U.....C.U.G.A.A........GUUACUGAC..G...AA.GA....................................U..GU.AGA..AA..A.AG.AA.CUAGC....-.-...-.-.--......-.---..--...--..-.--..-.-..-.-.-....-.--.....--.-....-.....-..-.......-.-...-..-...-.---..-acgucuccaagaccgccaugcuaaau.........................ugguaacguuggaagagggggaaauua...--...-.-....-.-..--.-.-A.AA.A......G......G.A...U.....G...AU...A............................................................UA......A......C......GCU......CAUUGACUUUACCG..GCUAU.GUA..G..A..........................................................UGGUGAAGCC...UUUGA.A...GGAGGU
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   NZ_LT615367.1     ACC.G......C...UG....G.....U.U.G.A.C........GUUUCCGAU..G...CU.GA....................................U..GU.UGA..CG..G.CA.UG.CUUGA....U.A...C.G.CU......G.CGU..AA...AC..A.AC..A.G..G.C.C....A.CC.....UG.G....A.....A..A.......G.A...C..G...C.UGA..U.................................................................................GG...C.G....C.G..GC.A.AG.UG.C......A......G.A...A.....G...AU...C............................................................GC......G......U......CAC......CAUCGAUUUCACCG..GUUCU.GUU..G..G..........................................................UGGUGAAGAA...UUCGA.A...GGCGGU
   NZ_LT855380.1     UCU.G......U...CC....G.....C.C.G.A.C........GUGGCCGAC..A...GC.GA....................................U..CU.GGA..CA..A.CA.UG.CUGGA....A.G...U.G.CU......G.CGC..AA...GC..A.GA..A.C..G.-.-....-.--.....--.-....-.....-..-.......-.-...-..-...-.---..-uucguuuugaagag..................................................accgaucgugccgc...--...-.-....-.-..UC.A.GA.A-.-......C......G.A...A.....G...AU...C............................................................AG......C......U......GAA......CAUCGAUUUCGUGG..GCAAG.GUC..G..A..........................................................CGGCGAAGCA...UUCGC.C...GGCGGU
   NZ_LT906445.1     ACA.A......G...AU....G.....C.U.A.C.A........GUAUCUGAU..G...AA.CA....................................A..AU.CGA..AG..A.AC.AG.UUGAA....C.A...A.U.AU......U.CGU..GA...AC..A.AC..A.A..G.C.A....A.--.....--.-....-.....-..-.......-.-...A..A...A.UGG..U.................................................................................--...U.G....U.U..GC.U.GA.AG.A......A......G.-...-.....-...--...-gcgcuacaauuc.................................aaaaagacgacu...UU......G......C......AGU......AAUCGACUUUGCUG..GUUCC.GUU..G..A..........................................................UGGUAAACCA...UUUGA.U...GGUGGU
   NZ_LT906447.1     ACA.A......A...AU....G.....C.U.G.A.A........UUAACUGAC..-...--.--gaagaauuacaaga.....agcaaucgaucaua...-..G-.---..--..-.--.UU.UAGGU....C.A...U.U.UA......G.CUG..AA...AU..G.G-..-.-..-.U.A....A.UU.....--.-....-.....-..-.......A.A...A..G...A.AGA..C.................................................................................GG...U.G....A.A..GU.U.GA.AG.A......A......G.G...C.....G...AC...A............................................................CU......G......U......CAA......UAUCGAUUUCGACG..GUUAU.GUU..G..A..........................................................CGGCGAACAA...UUCGA.A...GGCGGC
   NZ_LT906448.1     ACC.A......G...UU....G.....U.U.G.A.A........AUCACUGAU..G...CU.GA....................................C..AU.CGA..AA..A.AA.UG.AUCGA....A.G...U.A.UU......A.CGU..AA...AC..A.GC..A.A..G.C.A....A.CU.....UG.G....G.....C..U.......G.A...A..A...G.CAC..A.................................................................................GA...U.G....C.U..GC.A.AA.AG.C......A......G.A...A.....G...AU...C............................................................GU......G......U......GGU......GAUCGACUUUGUAG..GUUCU.GUU..G..A..........................................................UGGUGAAGAG...UUCGA.G...GGUGGU
   NZ_LT906463.1     ACC.A......A...CC....G.....U.A.G.A.A........AUCAACGAA..A...CC.GA....................................U..GU.CGA..CA..A.UA.UG.AUCGA....U.G...U.A.UU......A.CGU..AA...AC..A.AC..A.A..G.C.U....A.CU.....UG.G....G.....C..U.......G.A...A..A...G.CAA..C.................................................................................GA...U.G....C.A..GC.G.AA.AG.C......G......G.A...U.....U...CC...C............................................................GU......G......U......AAC......UAUCGAUUUCGUCG..GUUCU.GUU..G..A..........................................................CGGUGAAGAA...UUCGA.U...GGUGGC
   NZ_LT906464.1     ACA.A......G...AU....G.....U.G.A.C.A........GUAACUGAU..G...AU.AU....................................G..GU.UGA..AG..-.-A.UG.CUGUA....A.AacaA.C.GU......C.UUG..AA...GC..A.AU..G.G..C.U.G....A.CA.....UG.G....U.....UguU.......A.A...A..G...A.AGA..C.................................................................................GG...U.G....C.A..GU.U.GA.AG.A......A......G.G...C.....G...AC...A............................................................CU......G......U......AAA......CUUAGACUUCGAUG..GUUAU.GUU..G..A..........................................................CGGUGAACAA...UUCGA.A...GGUGGA
   NZ_LT906479.1     GCC.G......G...UG....G.....U.U.G.A.A........GUUAACGAC..G...CU.GA....................................C..GU.CGA..CA..C.CA.UG.CUGGA....C.A...C.C.CU......G.CGC..AA...GC..A.GC..A.G..G.C.G....A.GC.....UG.G....A.....A..A.......G.A...C..A...G.CGA..C.................................................................................CG...C.G....C.A..GU.G.GA.AG.C......U......G.A...A.....G...AC...C............................................................GC......G......U......GAC......CGUUGACUUCACCG..GUUCU.AUC..G..A..........................................................CGGCGAAGAG...UUCGA.A...GGCGGC
   NZ_OU594967.1     AGU.G......U...CA....U.....C.U.G.A.A........GUGGUUGAC..A...GU.GA....................................U..GU.UGA..CG..A.CA.UG.GUUGA....A.A...C.U.CU......G.CGC..AA...GC..A.GC..G.C..G.U.C....A.AC.....UG.G....U.....C..U.......G.A...A..A...C.AAC..U.................................................................................GA...A.Ga..uG.C..UC.UgGA.AG.A......A......G.G...G.....G...AU...C............................................................GU......G......C......UAC......AUUUGACUUCGUUG..GUAAA.AUU..G..A..........................................................UGGCGAAGAA...UUUGA.A...GGUGGC


   Structure         (((.(..........((..........(.(.(.(.(.............((((..(............................................)..)).)).......................................................(..(.((..(.(....(.(......((....................................................................................................................................))...).)....).)..)).).)...(.(...............................................................................................))...................................((((.(((...........................................................................))).)))).....))))).....))))))


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tig



Position: 532-666, Conformation: #0







97% 90% 75% 50% Nucleotide present N N N Nucleotide identify E < 0.1 Base-pair covariation E < 0.05 Helix-level covariation 97% 90% 75%

R C Y R R Y G Y Y G A R G U R G A Y G G A Y R U G A Y R A Y G U G A R Y U R C R R A R C R R Y R R Y R R G R G A Y R G U A Y A U Y G A Y U U Y R G G Y R U G A Y G G Y G A R G R U U Y G A R G G Y G G Y 5'