thrU-tyrU-glyT-thrT-tufB-secE-rplK-rplA-rplJ-rplL-rpoB-rpoC-nusG



Position: 7082-7191, Conformation: #0







DMS reactivity > 1.0 0.0 0.4 0.7 G/U/No data
Position: 0 (position.label in template: 0.5')5' Position: 1 (position.label in template: 1.U) Reactivity: nanU Position: 2 (position.label in template: 2.G) Reactivity: nanG Position: 3 (position.label in template: 3.G) Reactivity: nanG Position: 4 (position.label in template: 4.U) Reactivity: nanU Position: 5 (position.label in template: 5.C) Reactivity: nanC Position: 6 (position.label in template: 6.G) Reactivity: nanG Position: 7 (position.label in template: 7.U) Reactivity: nanU Position: 8 (position.label in template: 8.A) Reactivity: nanA Position: 9 (position.label in template: 9.U) Reactivity: nanU Position: 10 (position.label in template: 10.G) Reactivity: nanG Position: 11 (position.label in template: 11.A) Reactivity: nanA Position: 12 (position.label in template: 12.A) Reactivity: nanA Position: 13 (position.label in template: 13.G) Reactivity: nanG Position: 14 (position.label in template: 14.U) Reactivity: nanU Position: 15 (position.label in template: 15.U) Reactivity: nanU Position: 16 (position.label in template: 16.C) Reactivity: nanC Position: 17 (position.label in template: 17.A) Reactivity: nanA Position: 18 (position.label in template: 18.A) Reactivity: nanA Position: 19 (position.label in template: 19.C) Reactivity: nanC Position: 20 (position.label in template: 20.C) Reactivity: nanC Position: 21 (position.label in template: 21.G) Reactivity: nanG Position: 22 (position.label in template: 22.U) Reactivity: nanU Position: 23 (position.label in template: 23.U) Reactivity: nanU Position: 24 (position.label in template: 24.C) Reactivity: nanC Position: 25 (position.label in template: 25.U) Reactivity: nanU Position: 26 (position.label in template: 26.C) Reactivity: nanC Position: 27 (position.label in template: 27.U) Reactivity: nanU Position: 28 (position.label in template: 28.G) Reactivity: nanG Position: 29 (position.label in template: 29.C) Reactivity: nanC Position: 30 (position.label in template: 30.U) Reactivity: nanU Position: 31 (position.label in template: 31.G) Reactivity: nanG Position: 32 (position.label in template: 32.C) Reactivity: 1C Position: 33 (position.label in template: 33.G) Reactivity: nanG Position: 34 (position.label in template: 34.C) Reactivity: 0.5C Position: 35 (position.label in template: 35.G) Reactivity: nanG Position: 36 (position.label in template: 36.A) Reactivity: 1A Position: 37 (position.label in template: 37.A) Reactivity: 0.5A Position: 38 (position.label in template: 38.G) Reactivity: nanG Position: 39 (position.label in template: 39.A) Reactivity: 0A Position: 40 (position.label in template: 40.A) Reactivity: 0.5A Position: 41 (position.label in template: 41.A) Reactivity: 0A Position: 42 (position.label in template: 42.U) Reactivity: nanU Position: 43 (position.label in template: 43.C) Reactivity: 0.5C Position: 44 (position.label in template: 44.G) Reactivity: nanG Position: 45 (position.label in template: 45.A) Reactivity: 0.5A Position: 46 (position.label in template: 46.A) Reactivity: 0.5A Position: 47 (position.label in template: 47.G) Reactivity: nanG Position: 48 (position.label in template: 48.G) Reactivity: nanG Position: 49 (position.label in template: 49.U) Reactivity: nanU Position: 50 (position.label in template: 50.U) Reactivity: nanU Position: 51 (position.label in template: 51.C) Reactivity: 0C Position: 52 (position.label in template: 52.C) Reactivity: 0C Position: 53 (position.label in template: 53.G) Reactivity: nanG Position: 54 (position.label in template: 54.G) Reactivity: nanG Position: 55 (position.label in template: 55.U) Reactivity: nanU Position: 56 (position.label in template: 56.A) Reactivity: 0A Position: 57 (position.label in template: 57.U) Reactivity: nanU Position: 58 (position.label in template: 58.C) Reactivity: 0C Position: 59 (position.label in template: 59.C) Reactivity: 0C Position: 60 (position.label in template: 60.U) Reactivity: nanU Position: 61 (position.label in template: 61.G) Reactivity: nanG Position: 62 (position.label in template: 62.A) Reactivity: 0A Position: 63 (position.label in template: 63.G) Reactivity: nanG Position: 64 (position.label in template: 64.C) Reactivity: 0C Position: 65 (position.label in template: 65.A) Reactivity: 1A Position: 66 (position.label in template: 66.A) Reactivity: 0A Position: 67 (position.label in template: 67.A) Reactivity: 0A Position: 68 (position.label in template: 68.G) Reactivity: nanG Position: 69 (position.label in template: 69.A) Reactivity: 1A Position: 70 (position.label in template: 70.C) Reactivity: 0C Position: 71 (position.label in template: 71.G) Reactivity: nanG Position: 72 (position.label in template: 72.A) Reactivity: 0A Position: 73 (position.label in template: 73.C) Reactivity: 0C Position: 74 (position.label in template: 74.A) Reactivity: 0A Position: 75 (position.label in template: 75.U) Reactivity: nanU Position: 76 (position.label in template: 76.C) Reactivity: 0C Position: 77 (position.label in template: 77.A) Reactivity: 0.5A Position: 78 (position.label in template: 78.U) Reactivity: nanU Position: 79 (position.label in template: 79.U) Reactivity: nanU Position: 80 (position.label in template: 80.G) Reactivity: nanG Position: 81 (position.label in template: 81.A) Reactivity: 0A Position: 82 (position.label in template: 82.U) Reactivity: nanU Position: 83 (position.label in template: 83.G) Reactivity: nanG Position: 84 (position.label in template: 84.U) Reactivity: nanU Position: 85 (position.label in template: 85.U) Reactivity: nanU Position: 86 (position.label in template: 86.A) Reactivity: 0.5A Position: 87 (position.label in template: 87.U) Reactivity: nanU Position: 88 (position.label in template: 88.G) Reactivity: nanG Position: 89 (position.label in template: 89.A) Reactivity: 0A Position: 90 (position.label in template: 90.A) Reactivity: 1A Position: 91 (position.label in template: 91.A) Reactivity: 0.5A Position: 92 (position.label in template: 92.A) Reactivity: 0.5A Position: 93 (position.label in template: 93.A) Reactivity: 0A Position: 94 (position.label in template: 94.G) Reactivity: nanG Position: 95 (position.label in template: 95.C) Reactivity: 0C Position: 96 (position.label in template: 96.U) Reactivity: nanU Position: 97 (position.label in template: 97.C) Reactivity: 0C Position: 98 (position.label in template: 98.A) Reactivity: 0A Position: 99 (position.label in template: 99.U) Reactivity: nanU Position: 100 (position.label in template: 100.C) Reactivity: 0.5C Position: 101 (position.label in template: 101.G) Reactivity: nanG Position: 102 (position.label in template: 102.A) Reactivity: 0A Position: 103 (position.label in template: 103.U) Reactivity: nanU Position: 104 (position.label in template: 104.A) Reactivity: 0A Position: 105 (position.label in template: 105.U) Reactivity: nanU Position: 106 (position.label in template: 106.C) Reactivity: 0C Position: 107 (position.label in template: 107.C) Reactivity: 0C Position: 108 (position.label in template: 108.G) Reactivity: nanG Position: 109 (position.label in template: 109.U) Reactivity: nanU Position: 110 (position.label in template: 110.A) Reactivity: 0A Position: 111 (position.label in template: 111.A) Reactivity: 0.5A Position: 112 (position.label in template: 112.C) Reactivity: 0C Position: 113 (position.label in template: 113.G) Reactivity: nanG Position: 114 (position.label in template: 114.G) Reactivity: nanG Position: 115 (position.label in template: 115.U) Reactivity: nanU Position: 116 (position.label in template: 116.A) Reactivity: 1A Position: 117 (position.label in template: 117.A) Reactivity: 1A Position: 118 (position.label in template: 118.A) Reactivity: 0.5A Position: 119 (position.label in template: 119.G) Reactivity: nanG Position: 120 (position.label in template: 120.G) Reactivity: nanG Position: 121 (position.label in template: 121.C) Reactivity: nanC Position: 122 (position.label in template: 122.G) Reactivity: nanG Position: 123 (position.label in template: 123.A) Reactivity: nanA Position: 124 (position.label in template: 124.A) Reactivity: nanA Position: 125 (position.label in template: 125.G) Reactivity: nanG Position: 126 (position.label in template: 126.U) Reactivity: nanU Position: 127 (position.label in template: 127.C) Reactivity: nanC Position: 128 (position.label in template: 128.G) Reactivity: nanG Position: 129 (position.label in template: 129.A) Reactivity: nanA Position: 130 (position.label in template: 130.U) Reactivity: nanU Position: 131 (position.label in template: 131.G) Reactivity: nanG Position: 132 (position.label in template: 132.A) Reactivity: nanA Position: 133 (position.label in template: 133.U) Reactivity: nanU Position: 134 (position.label in template: 134.A) Reactivity: nanA Position: 135 (position.label in template: 135.U) Reactivity: nanU Position: 136 (position.label in template: 136.C) Reactivity: nanC Position: 137 (position.label in template: 137.G) Reactivity: nanG Position: 138 (position.label in template: 138.A) Reactivity: nanA Position: 139 (position.label in template: 139.C) Reactivity: nanC Position: 140 (position.label in template: 140.C) Reactivity: nanC Position: 141 (position.label in template: 141.A) Reactivity: nanA Position: 142 (position.label in template: 142.C) Reactivity: nanC Position: 143 (position.label in template: 143.C) Reactivity: nanC Position: 144 (position.label in template: 144.U) Reactivity: nanU Position: 145 (position.label in template: 145.C) Reactivity: nanC Position: 146 (position.label in template: 146.G) Reactivity: nanG Position: 147 (position.label in template: 147.G) Reactivity: nanG Position: 148 (position.label in template: 148.C) Reactivity: nanC Position: 149 (position.label in template: 149.A) Reactivity: nanA Position: 150 (position.label in template: 150.A) Reactivity: nanA Position: 151 (position.label in template: 151.3')3' 10 20 30 50 100


thrU-tyrU-glyT-thrT-tufB-secE-rplK-rplA-rplJ-rplL-rpoB-rpoC-nusG



Position: 7082-7191, Conformation: #0







Retained alignments:


   NC_002977.6       GCCGGAUG..AAG.....UU.....C....A...A..C..C...GG..C..G..CCU...G...GG.G..CG.-...GA................................................................C.C.G.AU.C..CU..AcC...GG.C..C.......C.....C....GG..C..G..U.G......CU.G.G.A..A..AAC.GA..U.GAC.A.UCAUC...................................................................GCG..G...U...G.CUG.AA..GGA...ACUG..A..UC......AA.C....A...UC...CG..UAA...CGGGGGGGG.CACGGUCGACGACAUCGACCAU.CUGGGU
   NC_003910.7       GUCGUAUG..AAG.....UU.....C....A...A..C..C...GU..C..G..UGU...-...--.-..--.-...--uggcaau..............................................gcagauga...-.-.-.--.-..UG..U.U...GG.U..A.......C.....U....GG..U..A..U.C......UU.G.U.C..A..AAA.GA..A.GAU.A.UUAUU...................................................................UCA..G...U...A.AUG.AA..AAC...CUUA..A..UC......GG.C....A...UU...CG..UGA...CGGUAAAGG.UGAAGUUGAUGAUAUCGAUCAC.UUAGGU
   NC_004347.2       GUCGUAUG..AAG.....UU.....C....A...A..C..C...GU..C..G..UCU...-...CA.G..CA.-...--uu.........................................................cc...U.G.A.UG.A..CG..A.A...GG.U..A.......G.....C....GG..U..G..U.A......UU.G.U.C..U..AAA.GA..A.GAC.A.UCGUU...................................................................GCU..G...U...A.AUG.AA..GAA...CAUU..A..UU......CA.C....A...UC...CG..UAA...CGGCUUCGA.CGAAGUGGACGAUAUCGACCAC.UUAGGU
   NC_004578.1       GUCGUAUG..AAG.....UU.....C....A...A..C..C...GU..C..G..UAU...C...GG.U..CG.G...AC................................................................C.G.A.AA.U..CG..A.A...GG.U..U.......C.....G....GG..C..G..U.G......CU.G.U.G..C..AAG.GA..A.GAC.A.UCGUA...................................................................GCG..G...U...C.CUC.AA..GAC...CCUC..G..UU......GA.U....A...UC...CG..UAA...CGGCAAAGG.CAUCGUCGAUGACAUCGACCAC.CUCGGU
   NC_004603.1       GUCGUAUG..AAG.....UU.....U....A...A..C..A...GC..U..C..UA-...-...UC.G..GU.C...GU................................................................G.A.A.GA.-..--..-.-...UG.C..U.......C.....A....--..-..-..-.-......-A.G.A.G..C..AAG.GC..A.CAC.U.U----gaugaaaca..............................................gauaucaucg..-AA..G...U...G.AUG.AA..GAA...GCUU..A..UC......GC.G....A...UC...CG..UAA...CGGUAAAGG.CGAAGUGGACGAUAUCGACCAC.CUAGGU
   NC_004757.1       GGCGGAUG..AAA.....UU.....C....A...A..U..C...GU..C..G..GGU...G...GG.G..CG.C...GA................................................................G.G.A.AU.U..AA..C.G..gGA.U..C.......U.....A....CG..A..C..U.C.....uAU.C.A.-..-..AAU.GA..C.GAU.A.UCAUC...................................................................GAU..G...U...U.AUC.AA..GAU...ACUG..G..UC......GA.G....C...UG...CG..CAA...UGGUCGAGG.AGAGAUCGAUGAUAUUGAUCAC.UUAGGU
   NC_005126.1       GUCGUAUG..AAA.....UU.....C....A...A..C..C...GC..U..C..AUU...G...AG.C..CG.U...GA................................................................A.G.A.AG.U..CG..A.A...GG.A..U.......C.....U....GG..U..A..U.U......CU.G.A.G..U..AAA.GA..U.GAC.A.UCAUU...................................................................GAU..G...U...C.AUG.AA..AAA...ACUC..A..UU......GA.U....A...UC...CG..UAA...UGGUAAAGG.UGAAGUCGACGAUAUCGACCAC.UUAGGU
   NC_005966.1       GACGUAUG..AAG.....UU.....C....A...A..C..C...GU..C..G..UUU...G...--.-..--.-...--ggucguccauacgaagucgg.....................uacagaucagaaaucucgcg...-.-.A.AG.U..UG..A.A...GG.U..A.......U.....-....--..U..C..U.C......UC.G.A.A..U..GAA.GA..U.---.A.UCAUC...................................................................GAU..G...U...A.CUG.CG..UAC...ACUU..G..UA......GA.G....A...UU...CG..UAA...CGGUAAAGG.UGAAGUUGACGAUAUCGAUCAC.UUGGGU
   NC_006300.1       GCCGUAUG..AAA.....UU.....C....A...A..C..C...GU..U..C..UUUa.gG...CU.U..GG.C...GG................................................................A.G.-.-G.G..CG..U.U...GG.U..A.......A.....C....GG..C..G..U.G......CU.A.A.G..C..AAA.GA..A.GAU.A.UCGUC...................................................................GGC..G...U...G.AUG.AA..AAA...ACUG..A..UU......GA.U....A...UC...CG..UAA...CGGUCGAGG.CGAAGUGGACGAUAUCGACCAC.UUAGGC
   NC_006512.1       GCCGCAUG..AAG.....UU.....C....A...A..C..C...GU..C..G..UUU...G...GG.U..CG.U...GA.............................................................agaC.U.U.AA.G..CG..G.U...GA.U..A.......Ac...aC....GU..U..G..U.C......C-.-.-.-..-..AGA.GA..A.GAC.A.UCGUC...................................................................GAA..G...U...C.AUG.AA..AAA...ACUU..A..UC......GA.A....A...UC...CG..UAA...CGGUUUAGA.UGAAGUUGAUGACAUUGACCAC.CUGGGU
   NC_007204.1       GUCGUAUG..AAG.....UU.....U....A...A..C..C...GU..C..G..U--...-...--.-..--.-...--u..........................................................ua...-.-.-.--.-..--..-.-...GG.U..C.......U.....U....GA..U..U..U.U......GU.A.G.A..U..ACG.GA..U.GAC.G.-----cugauauucagcgugaacguagcg................uauugaccaaugccgacaucguuaa..--C..G...U...A.UUA.AA..AGA...GCUG..A..UC......GA.G....A...UU...CG..UAA...UGGUCGCGG.UGAAGUUGAUGAUAUUGACCAU.UUAGGU
   NC_007292.1       -----AUG..AAA.....UU.....C....A...A..U..C...GG..U..C..AUU...A...CA.A..CG.A...GU................................................................A.C.A.AA.U..AG..A.A...GA.U..U.......U.....A....GG..A..A..-.C......AU.U.A.A..A.aAAG.GA..U.GAU.A.UUGUU...................................................................GAU..G...U...A.AUA.AA..AAA...AUUG..A..UU......GA.U....A...UU...AG..AAA...CGGUAAAGG.CGAAGUAGAUGAUAUCGAUCAU.UU----
   NC_007406.1       GCCGCGUC..AAG.....AU.....G....A...-..-..-...--..-..-..---...-...--.-..--.-...--acaugcgccucgaccuc...........................gaugcgccggacaccua...-.-.-.--.-..--..-.-...--.-..U.......C.....G....CA..C..G..C.-......-U.C.C.G..C..AAG.GA..G.GAC.A.UCCUU...................................................................GCG..G...U...C.AUC.AA..GAC...GCUG..G..UC......GA.C....C...UG...CG..CGA...CGGCAAGGG.AGAGAUCGACGACAUCGACCAC.CUCGGC
   NC_007481.1       GUCGUAUG..AAG.....UU.....Ca.auA...G..C..C...GU..-..-..---...-...--.-..--.-...--guugguuacg........................................auaccgauaca...-.-.-.--.-..--..-.-...GG.C..C.......C.....A....GG..C..A..C.A......UU.A.A.G..C..AAA.GA..A.GAC.A.UCGUG...................................................................UCG..G...U...U.AUG.AA..AGU...AUUG..A..UU......GC.U....A...UU...CG..UAA...CGGUGUUGG.CGAUGUAGAUGAUAUUGACCAC.UUAGGC
   NC_007484.1       GCCGAAUG..AAA.....UU.....U....A...A..U..C...GC..C..G..UCU...G...GG.G..AA.A...GA................................................................A.G.A.UA.U..UA..C.U...GG.C..C.......C.....A....AG..U..A..U.A......UU.A.U.C..C..AAA.GA..A.GAU.A.UUGUC...................................................................GAU..G...U...U.AUA.AA..GAC...UCUA..G..UC......GA.U....A...UC...CG..UAA...UGGUUACGG.CAGUGUGGAUGAUGUUGAUCAU.CUGGGC
   NC_007510.1       GCCGUAUG..AAG.....UU.....C....A...A..C..C...GC..C..G..CGU...C...AG.C..CG.U...GA................................................................C.G.A.--.-..--..-.-...GA.U..C.......A.....C....CG..G..-..-.C......CC.G.A.U..G..---.--..-.---.-.-----acgcugcaggacgacgaca...........................uccucgcgacgaucaagau..---..-...-...-.---.--..---...CCUC..G..UC......GA.G....C...UG...CG..CAA...CGGCAAGGG.CGAAGUGGACGACAUCGACCAC.CUCGGC
   NC_007645.1       GGCGCAUG..AAG.....UU.....C....A...A..C..C...GC..A..G..AUU...G...GG.G..CG.C...GA................................................................A.G.A.AA.C..AG..A.A...GG.G..C.......U.....G....GG..C..G..U.U......CU.G.A.G..U..CAU.UC..A.GAU.A.UUAUU...................................................................GAC..G...U...U.UUG.AG..GAC...GUUG..A..UC......GA.U....A...UC...CG..UAA...UGGUAAAGG.CGUUGUGGAUGAUAUCGAUCAU.CUUGGU
   NC_007712.1       GCCGGAUG..AAG.....UU.....C....A...A..C..C...GU..U..C..GCU...G...CU.G..CG.U...GA................................................................A.G.A.GA.U..UG..A.A...GG.U..U.......C.....C....GG..U..A..U.C......CU.G.A.G..C..AAA.GA..C.GAC.A.UCAUU...................................................................GAA..G...U...G.AUG.AA..GAA...GCUC..A..UC......GA.U....A...UU...CG..UAA...CGGUAAAGG.CGAAGUCGACGAUAUCGACCAC.UUGGGC
   NC_007794.1       GCCGCGUG..AAG.....CU.....G....-...-..-..-...--..-..-..---...-...--.-..--.-...--aacaugc..............................................gucucggc...-.-.-.--.-..--..-.-...--.-..-.......C.....U....GG..A..U..U.G......CC.C.G.G..A..CAC.GG..U.CAC.C.-----acccugcgcaccg.......................................acgacauccucgc..--G..G...U...G.GUC.AA..GGA...GCUG..G..UG......AA.C....C...UC...AA..GGA...CGGCAAGGG.CGAAGUCGACGACAUCGACAAC.CUCGGC
   NC_007908.1       GCCGGAUG..AAG.....UU.....C....A...A..C..G...CC..A..A..GAU...G...GG.-..-C.C...G-a...........................................................c...C.G.G.AA.U..CG..A.C...UG.G..C.......C.....C....CA..U.gG..U.U......CU.G.A.C..C..AAC.GA..G.GAU.A.UCCUG...................................................................GCA..G...U...C.GUC.AA..GAU...UCUG..G..UG......GA.C....U...UG...CG..CAA...UGGUCGCGG.CGACGUGGACGACAUUGACCAC.CUUGGC
   NC_007912.1       GUCGAAUG..AAG.....UU.....C....A...A..C..C...GC..C..G..UUU...G...GG.U..CG.U...GA................................................................U.U.C.AG.A..AG..U.U...GG.U..U.......C.....U....GG..A..A..C.G......CU.A.U.C..U..AAU.GA..A.GAU.A.UAGUU...................................................................GAU..G...U...A.UUA.AA..AAC...GCUU..A..UC......GA.C....A...UU...CG..CAA...CGGUAAAGG.CGUGGUGGAUGAUAUCGAUCAC.CUCGGU
   NC_007951.1       GUCGUAUG..AAG.....UU.....C....A...A..U..C...GC..C..G..UGU...C...GG.C..CG.C...GA................................................................C.G.A.AA.U..CG..U.C...GG.U..C.......C.....G...aUG..A..C..G.C......U-.-.-.-..G..CAA.GA..C.GAC.G.AUAUC...................................................................CUC..G...C...C.ACG.AU..CAAgauCCUG..G..UC......GA.G....C...UG...CG..UAA...CGGCAAGGG.CGAAGUGGACGACAUCGACCAC.UUGGGC
   NC_007954.1       GUCGUAUG..AAG.....UU.....C....A...A..C..C...GU..C..G..UCU...U...GA.G..AU.U...GC................................................................U.G.A.AG.A..CG..A.A...GG.U..A.......A.....C....GG..C..G..U.A......UU.G.U.C..A..AAA.GA..U.GAC.A.UCGUU...................................................................UGC..G...U...U.AUG.AA..GAA...AAUC..A..UC......GA.A....A...UC...CG..UAA...UGGUUAUGA.UGAAGUCGACGACAUUGACCAC.UUAGGU
   NC_007963.1       GUCGGAUG..AAG.....UU.....U....A...A..U..C...GC..C..G..CCU...G...CG.C..CG.U...GA................................................................A.G.G.CG.A..CA..C.G...GG.C..U.......C.....C....GG..C..G..U.G......CU.C.G.A..C..AAC.CA..G.GAC.A.UCCUC...................................................................GAU..G...U...C.AUG.CG..CGA...GCUG..A..UC......AA.U....A...UC...CG..UAA...CGGCUUCGG.CGAAGUCGACGAUAUCGAUCAC.CUGGGC
   NC_007964.1       GCCGCGUC..AAG.....AU.....G....A...-..-..-...--..-..-..---...-...--.-..--.-...--auaugcgccucgaccuc...........................gaugcgccggacaccua...-.-.-.--.-..--..-.-...--.-..U.......C.....G....CA..C..G..C.U......GC.-.-.G..C..AAG.GA..A.GAC.A.UCCUG...................................................................GCC..G...U...C.AUC.AA..GAC...ACUG..G..UC......GA.C....C...UG...CG..CGA...CGGCAAGGG.CGAGAUCGACGAUAUCGACCAU.CUCGGC
   NC_008027.1       GCCGCAUG..AAG.....UU.....C....A...A..C..C...GU..C..G..UAU...C...GG.U..CG.U...AC................................................................C.G.A.GA.U..CG..A.A...GG.U..U.......C.....G....GG..C..G..U.G......CU.G.A.G..C..AAG.GA..A.GAC.A.UCGUC...................................................................GAG..G...U...C.CUG.AA..GAC...CCUG..G..UC......GA.U....A...UC...CG..UAA...CGGCAAAGG.CAUCGUCGACGACAUCGACCAC.CUGGGU
   NC_008340.1       GGCGCAUG..AAG.....UU.....C....A...A..C..C...UG..C..G..CGU...C...GG.G..CG.G...GA................................................................C.G.A.GG.U..CA..C.C...GG.C..C.......C.....C....GG..G..G..U.G......CU.G.G.A..C..AAU.GA..C.GAC.A.UCCUC.................................................................gcGGU..G...C...U.GCG.GG..AA-...-CUG..A..UC......AA.C....A...UC...CG..CAA...CGGCGACGG.CCAGGUGGACGACAUCGACCAC.CUGGGC
   NC_008344.1       GUCGGAUG..AAA.....UU.....C....A...A..U..C...GG..C..G..GGU...G...GG.G..CG.U...GA................................................................A.G.A.AC.U..AA..C.A...GG.C..U.......C.....U...aCG..A..C..C.U......-U.A.U.C..A..AAU.GA..A.GAU.A.UUACU...................................................................GAU..G...U...U.AUC.AA..AAU...ACUG..G..UU......GG.G....U...UG...CG..AAA...UGGUAGAGG.CGAGAUUGAUGAUAUCGACCAC.UUGGGU
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   NZ_LT906448.1     GUCGUAUG..AAA.....UU.....U....A...A..C..C...GC..U..C..UUU...A...GG.U..AU.U...GA................................................................U.G.A.AG.A..GA..C.U...GG.U..A.......G.....C....GG..C..A..U.U......UU.A.A.G..C..AAU.GA..A.GAC.A.UCAUC...................................................................GGU..G...U...G.AUG.AA..AAA...ACUG..A..UC......GA.G....A...UC...CG..UAA...UGGUCGUGG.CGAAGUUGAUGAUAUCGACCAC.UUAGGU
   NZ_LT906451.1     GGCGCAUG..AAA.....UU.....U....A...A..U..C...GU..C..G..UG-...-...--.-..--.-...--uagguagaaa.........................................agaggauucu...-.-.-.--.-..--..-.-...GG.U..C.......C.....A....GG..C..A..C.U......UU.G.A.C..U..AAA.GA..G.GAU.A.UUCUU...................................................................GCC..G...U...C.AUC.AA..AAC...GCUU..A..UC......GA.U....A...UC...CG..CAA...CGGUAUCGG.AAUGGUUGAUGAUAUUGAUCAC.CUAGGA
   NZ_LT906463.1     GCCGUAUG..AAG.....UU.....U....A...A..U..C...GU..U..C..UUU...A...--.-..--.-...--aguau..................................................uccuga...-.-.-.AG.G..UG..U.U...GG.U..A.......C.....A....GG..U..A..C.U......UU.A.A.G..U..AAU.GA..C.GAU.A.UUAUU...................................................................CGA..G...U...G.AUG.AA..AAA...ACUC..A..UC......GA.C....A...UC...CG..UAA...UGGUCGUGG.UGAAGUAGAUGAUAUCGACCAC.UUGGGU
   NZ_LT906479.1     GCCGCAUG..AAG.....UU.....C....A...A..C..C...GU..U..C..UCU...G...CU.G..CG.U...GA................................................................C.G.A.GA.U..CG..A.A...GG.U..U.......C.....G....GG..C..A..U.C......CU.G.A.G..C..AAA.GA..C.GAC.A.UCAUC...................................................................GAA..G...U...G.AUG.AA..GAA...GCUC..A..UC......GA.U....A...UC...CG..UAA...CGGUAAAGG.UGAAGUGGACGAUAUCGACCAC.UUGGGC
   NZ_LT906482.1     --------..---.....--.....-....-...G..C..C...GC..C..U..GUU...G...--.-..--.-...--aaugaaacucuggc.................................cggugcggcugaaa...-.-.-.--.-..--..A.A...GG.C..G.......G.....G....UU..U..A..U.C......CU.C.A.G..C..ACC.GA..A.G--.-.-----acauug....................................................uugccuc..---..-...-...C.AUU.GC..CAC...GCUG..G..UU......GA.A....U...UG...CG..CAA...CGGCCAUGG.CGAAGUGGAUGAUAUUGACCAC.CUAGGU
   NZ_LT907988.1     GCCGCAUG..AAG.....GU.....C....A...A..C..A...GC..C..G..CCU...GgguCG.C..GG.C...GA................................................................C.G.A.CA.U..CA..C.C...GG.U..C.......C.....G....CU..G..A..C.G......CU.G.A.C..C..AAC.GA..A.GAC.A.UCGUC...................................................................GAG..A...C...C.AUC.AA..GGU...GCUG..G..UC......GA.G....C...UG...CG..UAA...CGGCCGUGG.CCAGAUCGAUGACAUCGAUCAC.CUGGGC
   NZ_LT960614.1     GUCGCGUC..AAG.....AU.....G....-...-..-..-...--..-..-..---...-...--.-..--.-...--aacaugcgccuugaucu...........................caagugcgaggacacgg...-.-.-.--.-..--..-.-...--.-..-.......U.....C....CG..C..A..U.C......CU.G.C.G..C..AAG.GA..G.GAC.A.UCCUU...................................................................UCG..G...U...C.AUC.CA..GAC...GCUG..G..UC......GA.A....C...UG...CG..UGA...CGGCAAGGG.CGAGAUCGACGACAUCGACAAU.CUCGGC
   NZ_OU015521.1     GUCGAAUG..AAA.....UU.....C....A...A..C..C...GU..C..G..--A...G...UC.G..GA.C..gGA................................................................G.A.G.AA.U..UG..AcA...GG.A..U.......C.....A....GG..A..A..U.U......CU.A.U.C..U..AAA.GA..A.GAU.A.UUAUA...................................................................GAU..G...C...G.UUG.CG..CGU...UCUU..G..UU......GA.C....A...UU...CG..AGA...UGGUAAAGG.CGAAGUAGAUGAUAUUGACCAU.UUAGGA
   NZ_OU343031.1     GUCGAAUG..AAG.....UU.....U....A...A..C..C...GU..C..G..AGU...C...GG.U..CG.U...GA................................................................U.G.A.GA.U..UC..A.U...GG.U..C.......C.....G....AU..G..A..C.-......--.-.-.-..-..---.--..-.---.-.-----cuugaccgaugaugaucuac........................uugcggcaauuaagauuuuag..---..-...-...-.---.--..---...----..-..UU......GG.G....C...UG...CG..CAA...CGGUAAAGG.AGAGGCCGAUGAUAUCGACCAU.CUUGGU
   NZ_OU594967.1     GUCGGAUG..AAA.....UU.....U....A...A..C..-...--..-..-..--A...G...CC.G..U-.-...--gucagcc..............................................gugaagau...G.G.U.AA.U..GA..A.G...--.-..-.......C.....A....GG..U..A..U.U......U-.U.G.G..A.uAAA.AC..C.GAU.A.UCCUG...................................................................UCU..G...U...C.AUG.AA..AAC...UCUG..A..UC......GA.C....A...UU...CG..UAA...CGGUCAUGG.UGAAGUCGAUGAUAUCGACCAC.UUGGGU
   NZ_OU907312.1     GUCGUAUG..AAG.....UU.....U....A...A..C..C...GC..U..C..CUU...A...GG.A..CG.U...GA................................................................C.A.C.GA.U..UG..A.A...GG.C..C.......C.....U....GG..G..G..U.G......UU.A.A.G..C..CAU.CA..A.GAU.A.UCAUU...................................................................GAG..G...U...C.AUG.AA..GAA...GUUG..A..UU......GA.G....A...UU...CG..UAA...UGGACGAGG.GGAGAUCGACGACAUUGACCAU.CUGGGU
   NZ_OU912926.1     GGCGUAUG..AAA.....UU.....C....A...A..C..C...GU..C..G..UAU...C...GG.G..UC.G...GA................................................................U.G.A.GU.U..GA..C.A...GG.U..U.......C.....A....-G..U..C..A.C......GC.U.A.U..C.uAAU.GA..A.GAU.A.UCGUG...................................................................GCG..G...U...A.AUC.AA..GAU...UAUG..G..UC......GA.G....U...UG...CG..CAA...UGGUCGUGG.CGAAAUUGACGAUAUUGAUCAU.CUCGGC


   Structure         ((((..........................(...(..(..(.......................((.............................................................................).)...................)).)..)..................((..(..(..(.(.......(.(.(.(..(............(((.(.((......................................................................)))..)...)...)...............))))..)..........)).)....)...))..............(((...((.(((.(((...))).))).)))).).))))


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thrU-tyrU-glyT-thrT-tufB-secE-rplK-rplA-rplJ-rplL-rpoB-rpoC-nusG



Position: 7082-7191, Conformation: #0







97% 90% 75% 50% Nucleotide present N N N Nucleotide identify E < 0.1 Base-pair covariation E < 0.05 Helix-level covariation 97% 90% 75%

G Y C G A U G A A R Y U Y A A Y R R G R R Y Y U Y R A G A G A Y A U Y U R G U U A A R R Y U R U Y G A U C G Y A A Y G G Y R G G Y G A R R U G A Y G A Y A U Y G A Y C A C Y U G G Y 5'