thrU-tyrU-glyT-thrT-tufB-secE-rplK-rplA-rplJ-rplL-rpoB-rpoC-nusG



Position: 5481-5565, Conformation: #0







DMS reactivity > 1.0 0.0 0.4 0.7 G/U/No data
Position: 0 (position.label in template: 0.5')5' Position: 1 (position.label in template: 1.U) Reactivity: nanU Position: 2 (position.label in template: 2.G) Reactivity: nanG Position: 3 (position.label in template: 3.A) Reactivity: nanA Position: 4 (position.label in template: 4.A) Reactivity: nanA Position: 5 (position.label in template: 5.A) Reactivity: nanA Position: 6 (position.label in template: 6.G) Reactivity: nanG Position: 7 (position.label in template: 7.A) Reactivity: nanA Position: 8 (position.label in template: 8.A) Reactivity: nanA Position: 9 (position.label in template: 9.G) Reactivity: nanG Position: 10 (position.label in template: 10.G) Reactivity: nanG Position: 11 (position.label in template: 11.C) Reactivity: nanC Position: 12 (position.label in template: 12.G) Reactivity: nanG Position: 13 (position.label in template: 13.U) Reactivity: nanU Position: 14 (position.label in template: 14.G) Reactivity: nanG Position: 15 (position.label in template: 15.A) Reactivity: nanA Position: 16 (position.label in template: 16.G) Reactivity: nanG Position: 17 (position.label in template: 17.C) Reactivity: nanC Position: 18 (position.label in template: 18.A) Reactivity: nanA Position: 19 (position.label in template: 19.A) Reactivity: nanA Position: 20 (position.label in template: 20.A) Reactivity: nanA Position: 21 (position.label in template: 21.G) Reactivity: nanG Position: 22 (position.label in template: 22.A) Reactivity: nanA Position: 23 (position.label in template: 23.C) Reactivity: nanC Position: 24 (position.label in template: 24.G) Reactivity: nanG Position: 25 (position.label in template: 25.A) Reactivity: nanA Position: 26 (position.label in template: 26.C) Reactivity: nanC Position: 27 (position.label in template: 27.G) Reactivity: nanG Position: 28 (position.label in template: 28.C) Reactivity: nanC Position: 29 (position.label in template: 29.A) Reactivity: nanA Position: 30 (position.label in template: 30.G) Reactivity: nanG Position: 31 (position.label in template: 31.A) Reactivity: 1A Position: 32 (position.label in template: 32.A) Reactivity: 0.5A Position: 33 (position.label in template: 33.G) Reactivity: nanG Position: 34 (position.label in template: 34.C) Reactivity: 0C Position: 35 (position.label in template: 35.A) Reactivity: 1A Position: 36 (position.label in template: 36.C) Reactivity: 1C Position: 37 (position.label in template: 37.U) Reactivity: nanU Position: 38 (position.label in template: 38.G) Reactivity: nanG Position: 39 (position.label in template: 39.A) Reactivity: 0A Position: 40 (position.label in template: 40.A) Reactivity: 0A Position: 41 (position.label in template: 41.A) Reactivity: 0.5A Position: 42 (position.label in template: 42.A) Reactivity: 1A Position: 43 (position.label in template: 43.A) Reactivity: 0.5A Position: 44 (position.label in template: 44.A) Reactivity: 0A Position: 45 (position.label in template: 45.G) Reactivity: nanG Position: 46 (position.label in template: 46.C) Reactivity: 0.5C Position: 47 (position.label in template: 47.U) Reactivity: nanU Position: 48 (position.label in template: 48.C) Reactivity: 0C Position: 49 (position.label in template: 49.U) Reactivity: nanU Position: 50 (position.label in template: 50.G) Reactivity: nanG Position: 51 (position.label in template: 51.G) Reactivity: nanG Position: 52 (position.label in template: 52.A) Reactivity: 0A Position: 53 (position.label in template: 53.A) Reactivity: 0.5A Position: 54 (position.label in template: 54.G) Reactivity: nanG Position: 55 (position.label in template: 55.A) Reactivity: 0A Position: 56 (position.label in template: 56.A) Reactivity: 0A Position: 57 (position.label in template: 57.G) Reactivity: nanG Position: 58 (position.label in template: 58.C) Reactivity: 0.5C Position: 59 (position.label in template: 59.U) Reactivity: nanU Position: 60 (position.label in template: 60.G) Reactivity: nanG Position: 61 (position.label in template: 61.G) Reactivity: nanG Position: 62 (position.label in template: 62.C) Reactivity: 0C Position: 63 (position.label in template: 63.G) Reactivity: nanG Position: 64 (position.label in template: 64.C) Reactivity: 0C Position: 65 (position.label in template: 65.U) Reactivity: nanU Position: 66 (position.label in template: 66.G) Reactivity: nanG Position: 67 (position.label in template: 67.A) Reactivity: 1A Position: 68 (position.label in template: 68.A) Reactivity: 0A Position: 69 (position.label in template: 69.G) Reactivity: nanG Position: 70 (position.label in template: 70.U) Reactivity: nanU Position: 71 (position.label in template: 71.U) Reactivity: nanU Position: 72 (position.label in template: 72.G) Reactivity: nanG Position: 73 (position.label in template: 73.A) Reactivity: 0.5A Position: 74 (position.label in template: 74.A) Reactivity: 0.5A Position: 75 (position.label in template: 75.G) Reactivity: nanG Position: 76 (position.label in template: 76.U) Reactivity: nanU Position: 77 (position.label in template: 77.U) Reactivity: nanU Position: 78 (position.label in template: 78.A) Reactivity: 0A Position: 79 (position.label in template: 79.A) Reactivity: 1A Position: 80 (position.label in template: 80.A) Reactivity: 1A Position: 81 (position.label in template: 81.U) Reactivity: nanU Position: 82 (position.label in template: 82.A) Reactivity: 0A Position: 83 (position.label in template: 83.A) Reactivity: 0A Position: 84 (position.label in template: 84.G) Reactivity: nanG Position: 85 (position.label in template: 85.C) Reactivity: 0C Position: 86 (position.label in template: 86.C) Reactivity: 0C Position: 87 (position.label in template: 87.A) Reactivity: 0A Position: 88 (position.label in template: 88.A) Reactivity: 0A Position: 89 (position.label in template: 89.C) Reactivity: 0C Position: 90 (position.label in template: 90.C) Reactivity: 0C Position: 91 (position.label in template: 91.C) Reactivity: 0C Position: 92 (position.label in template: 92.U) Reactivity: nanU Position: 93 (position.label in template: 93.U) Reactivity: nanU Position: 94 (position.label in template: 94.C) Reactivity: 0.5C Position: 95 (position.label in template: 95.C) Reactivity: 0.5C Position: 96 (position.label in template: 96.G) Reactivity: nanG Position: 97 (position.label in template: 97.G) Reactivity: nanG Position: 98 (position.label in template: 98.U) Reactivity: nanU Position: 99 (position.label in template: 99.U) Reactivity: nanU Position: 100 (position.label in template: 100.G) Reactivity: nanG Position: 101 (position.label in template: 101.C) Reactivity: nanC Position: 102 (position.label in template: 102.A) Reactivity: nanA Position: 103 (position.label in template: 103.G) Reactivity: nanG Position: 104 (position.label in template: 104.C) Reactivity: nanC Position: 105 (position.label in template: 105.C) Reactivity: nanC Position: 106 (position.label in template: 106.U) Reactivity: nanU Position: 107 (position.label in template: 107.G) Reactivity: nanG Position: 108 (position.label in template: 108.A) Reactivity: nanA Position: 109 (position.label in template: 109.G) Reactivity: nanG Position: 110 (position.label in template: 110.A) Reactivity: nanA Position: 111 (position.label in template: 111.A) Reactivity: nanA Position: 112 (position.label in template: 112.A) Reactivity: nanA Position: 113 (position.label in template: 113.U) Reactivity: nanU Position: 114 (position.label in template: 114.C) Reactivity: nanC Position: 115 (position.label in template: 115.A) Reactivity: nanA Position: 116 (position.label in template: 116.G) Reactivity: nanG Position: 117 (position.label in template: 117.G) Reactivity: nanG Position: 118 (position.label in template: 118.C) Reactivity: nanC Position: 119 (position.label in template: 119.U) Reactivity: nanU Position: 120 (position.label in template: 120.G) Reactivity: nanG Position: 121 (position.label in template: 121.A) Reactivity: nanA Position: 122 (position.label in template: 122.U) Reactivity: nanU Position: 123 (position.label in template: 123.G) Reactivity: nanG Position: 124 (position.label in template: 124.G) Reactivity: nanG Position: 125 (position.label in template: 125.C) Reactivity: nanC Position: 126 (position.label in template: 126.3')3' 10 20 30 50 100


thrU-tyrU-glyT-thrT-tufB-secE-rplK-rplA-rplJ-rplL-rpoB-rpoC-nusG



Position: 5481-5565, Conformation: #0







Retained alignments:


   NC_003910.7       GGC...G..U.....AGAG.A.A...A....G....C...U.GA...A....G..C...U..G...A.A.G.A...A...CUU.A...A..G..A..A...A.......................A..C..U...CUU...GAA...GAA...GCUG...GUGCUUCU...G.....UUGAGAU....CAAAUA......A......U....C.U....G..U..U..U...U.U..-..-.-........................................A..A.A..C.A...G.A..U.UG.U.UU....G....C..C.U...........................GA.A..A.A..G..G..C
   NC_004347.2       GGC...G..U.....UUCU.A.A...A....G....A...A.GA...A....G..C...U..G...A.A.G.C...U...CUG.A...A..G..A..A...A.......................G..A..A...CUA...GUU...GAA...GCUG...GUGCUUCA...G.....UAGAAAU....CAAGUA......A......G....C.U....A..U..-..-...-.-..-..-.-uaucu...........................agcuu...-..-.G..C.U...C.A..C.CC.A.AG....C....C..-.A...........................CU.U..G.G..G..U..G
   NC_005126.1       GGC...A..U.....CAGC.A.A...A....G....A...U.GA...C....G..C...U..G...A.A.G.C...A...CUG.A...A..A..A..A...A.......................U..C..U...CUG...GAA...GAA...GCAG...GCGCUUCU...G.....UUGAGAU....UAAGUA......A......G....U.U....U..A..G..C...U.U..U..A.A........................................G..U.U..A.G...C.A..G.CC.U.GA....C....U..U.G...........................AA.A..G.G..C..U..G
   NC_005966.1       GGC...A..U.....UUCU.A.A...A....G....A...A.GAaggC....G..A...A..G...A.G.C.U...U...AAG.A...A..G..A..A...A.......................-..-..-...CUU...GAA...GAA...GCUG...GUGCUACA...G.....UUACUCU....UAAGUA......A......U....U.-....-..-..-..-...-.-..-..-.-ucuuagggagucg...........auuauuugauaau...-..-.-..-.-...C.G..G.CU.C.CA...aA....A..A.A...........................U-.-..G.G..C..U..G
   NC_006512.1       GGU...G..U.....AAGC.A.A...A....G....A...C.GA...A....G..C...U..G...A.A.G.A...G...CUG.A...A..A..A..A...G.......................C..A..G...CUU...GAA...GAA...GCUG...GUGCGGAA...G.....UUGAAGU....UAAGUA......A......U....U.U....A..-..-..-...-.-..-..-.-acuuuug.......................uacgaca...-..-.-..U.A...U.G..G.CC.U.--....-....-..-.-u....................uu....--.A..G.G..C..C..U
   NC_006526.2       GGC...G..U.....UGCU.A.A...A....G....A...C.GA...A....G..C...U..G...A.A.A.A...G...CUG.A...A..A..A..A...G.......................-..-..-...CAGcuuGAA...GCA...GCCG...GUGCAACG...G.....UUGAACU....GAAGUA......A......G....C.U....U..U..U..U...U.U..-..-.-........................................A..A.A..A.G...U.U..U.CU.U.UG....G....-..-.-...........................UA.A..A.G..A..A..G
   NC_007503.1       AAA...G..U.....CAGC.A.A...A....G....C...U.GA...U....G..C...C..G...A.A.G.C...U...AUC.A...A..GgcC..A...A.......................G..C..U...U--...GAA...GAA...GUUG...GCGCUACU...G.....UUGAAAU....UAAAUAg....uA......A....C.U....U..-..-..-...U.U..C..C.A........................................A..A.A..A.A...C.C..C.CC.G.GC....A....A.aA.A...........................GC.C..G.G..G..G..G
   NC_007575.1       GGU...G..U.....AGAU.A.A...A....G....Ag.aC.UG...C....U..A...U..G...A.A.-.U...G...CUA.A...A..A..A..A...G.......................-..A..G...CUU...GAA...GAA...GCUG...GCGCAAAA...G.....UAGAAGU....UAAAUA......A......U....U.U....-..-..-..-...-.-..-..-.-uacuaccu....................acucgcaac...-..-.-..-.A...C.A..G.GA.G.AA....G....A..C.A..........................uUU.U..U.C..C..U..G
   NC_007604.1       GGU...G..U.....GUCC.A.A...A....G....A...C.GA...C....G..C...C..G...A.A.G.C...A...GCC.A...A..G..A..A...A.......................G..A..G...CUG...GAA...GAA...GCCG...GCGCCAAA...G.....UCAGCGU....CAAGUA......G......U....U.C....G..A..G..U...A.-..-..-.-........................................G..C.U..U.G...A.A..G.GC.A.GG....A....C..U.C...........................UC.U..G.U..C..U..U
   NC_007626.1       GGC...G..U.....CAGC.A.A...G....G....A...C.GA...A....G..C...C..G...A.G.A.A...G...AUC.A...A..G..A..A...G.......................G..U..U...CUG...GAA...GAG...GCCG...GCGCCAAG...G.....UGCAGGU....CAAGUA......A......G....A.-....A..C..G..C...C.U..U..C.U.......................................gG..U.G..U.U...U.A..U.CC.A.GG....G....G..-.-...........................CC.G..G.G..A..U..G
   NC_007712.1       GGC...G..U.....GAGC.A.A...A....G....A...U.GA...C....G..C...C..G...A.A.A.C...A...CUG.A...A..G..A..A...A.......................G..A..C...CUG...GAA...CAA...GCGG...GUGCUUCU...G.....UUGAGGU....UAAAUA......A......G....U.U....A..A..C..C...U.U..C..C.A........................................G..G.U..U.G...C.A..G.CC.U.GA....-....-..-.A...........................UU.A..G.G..C..U..G
   NC_007912.1       GGC...G..U.....UUCU.A.A...A....G....A...C.GA...C....G..C...A..G...A.A.G.A...A...GCU.A...A..G..A..A...A.......................U..U..A...CUU...GAA...GAA...GCUG...GCGCAUCU...G.....UCGAGCU....UAAGUA......A......G....U.U....G..-..-..-...-.U..U..U.-........................................-..-.-..C.A...A.A..G.CG.A.GG....G....-..-.-cuu.................ugc....CC.U..C.G..U..U..U
   NC_007947.1       GGC...G..U.....UUCC.A.A...G....G....C...U.GA...U....G..C...C..G...AaG.C.U...G...CUG.C...C..A..A..G...A.......................A..G..C...U-G...GAA...GAA...GCUG...GCGCCAAG...G.....CUGAAAU....CAAAUA......A......U....A.C....C..G..C..-...-.-..-..-.-uucaacac.....................aaggguau...-..G.C..A.G...G.C..U.GG.C.AG....G....A..A.A...........................CU.G..C.C..A..G..C
   NC_007954.1       GGC...G..U.....UUCU.A.A...A....G....A...A.GA...A....G..C...U..G...A.A.G.C...A...CUU.A...A..G..A..A...A.......................G..A..U...UUA...GAA...GCA...GCUG...GUGCUGUU...G.....UUGAAAU....CAAGUA......A......G....C.U....U..U..A..G...C.U..U..A.U........................................U..U.G..A.U...C.A..-.CC.C.AA....G....C..A.A...........................UU.G..G.G..-..U..G
   NC_008027.1       GGC...G..U.....UUCG.A.A...A....G....A...A.GC...C....G..C...U..G...A.A.G.A...C...GCG.A...A..G..A..A...G.......................A..A..G...CUG...GAA...GAA...GCAG...GCGCUAAA...G.....UCGAGCU....GAAGUA......A......U....U.U....C..G..A..C...U.U..U..G.C........................................G..A.C..U.C...C.A..G.UC.C.--....-....-..-.-gagcguu.........aagcgaa....--.G..G.G..C..U..G
   NC_008345.1       GCU...G..U.....GUCU.A.A...A....G....A...A.GA...A....G..C...U..G...C.A.A.C...U...CUU.A...A..A..G..C...U.......................G..A..U...CUA...GAA...GCC...GCUG...GUGCUUCU...G.....UUGAAGU....UAAGUA......A......G....C.U....A..U..A..A...U.U..U..AgC........................................U..U.G..C.A...U.C..A.CC.C.AA....G....U..G.A...........................UU.G..G.G..U..G..A
   NC_008700.1       GCU...G..U.....UUCU.A.A...A....G....A...A.GA...A....G..C...C..G...A.A.G.C...U...CUG.A...A..G..A..A...A.......................G..A..G...CUG...GAA...GAA...GCUG...GCGCUCAA...G.....UAGAGAU....CAAGUA......A......G....C.U....-..-..-..-...-.-..-..-.-auucuuu......................agcuuaca...-..-.-..-.A...C.A..U.UC.G.GG....U....U..A.-g.....................u...gCC.C..G.G..A..U..G
   NC_008709.1       GGU...A..U.....CUCU.A.A...A....G....C...A.GA...U....G..C...U..G...A.A.G.C...U...CUU.A...A..A..G..C...U.......................G..U..G...UUA...GAA...GAA...AUCG...GCGCAACU...G.....UUGAACU....UAAAUA......A......G....C.U....A..U..A..U...U.U..U.aU.A........................................A..C.U..U.A...U.U..A.GC.C.AU....G....U..A.A...........................AU.G..G.C..-..-..A
   NC_009092.1       GGC...A..U.....CUCU.A.A...A....G....A...A.GA...A....G..C...U..G...A.A.G.C...A...CUG.A...A..G..A..A...A.......................G..A..G...CUU...GAA...GAA...GCUG...GUGCUCAA...G.....UAGAGAU....CAAGUA......A......G....U.U....-..A..-..-...-.-..-..-.-uacucu.........................aacuua...-..-.C..A.A...C.C..U.CC.C.GA....G....U..G.A...........................UC.G..G.G..C..G..G
   NC_009379.1       GCU...G..U.....UGAU.A.A...-....G....A...A.GA...CagcuG..A...A..G...A.A.G.C...U...AAG.A...A..G..A..-...A.......................G..-..-...CUU...GAA...GAA...GCUG...GCGCUAAA...G.....CAGAACU....CAAGUA......A......U....A.C....A..A..G..C...A.-..-..C.U........................................G..C.U..G.G...C.G..C.CU.C.UC....A....C..-.A...........................AA.G..G.G..G..C..G
   NC_009441.1       GGU...G..U.....UUCU.A.A...A....G....A...A.GA...G....G..C...U..G...A.A.G.G...U...CUU.A...A..A..A..A...A.......................U..C..U...UUA...GAA...GAG...GCUG...GAGCUACU...G.....UUGAGCU....UAAAUA......A......U....U.A....A..A..C..U...C.-..-..-.-........................................A..G.U..U.U...A.A..G.AA.C.UA....G....G..U.U...........................UA.G..G.U..C..U..U
   NC_009446.1       GCU...G..C.....AAGC.A.A...A....G....A...A.GA...A....G..C...U..G...A.A.A.A...A...AUC.A...A..A..A..A...A.......................G..A..U...CUU...GAA...GAA...GCUG...GUGCAAAA...G.....CUGAACU....CAAAUA......A......U....C.U....U..U..U..G...A.A..U..G.C........................................G..A.U..G.A...A.A..G.UA.C.UG....G....-..-.-cauuu............aggugu....CA.G..U.A..C..U..U
   NC_009792.1       GGC...G..U.....GAGC.A.A...A....G....A...U.GA...C....G..C...U..G...A.A.G.C...U...CUG.A...A..A..A..A...A.......................U..C..U...CUG...GAA...GAA...GCUG...GCGCUGAA...G.....UUGAAGU....UAAAUA......A......G....C.C....A..A..C..C...C.U..U..C.C........................................G..G.U..U.G...C.A..G.CC.U.AA....G....A..A.A...........................UU.A..G.G..C..U..G
   NC_009831.1       GCU...A..U.....CACU.A.A...A....G....A...A.GA...A....G..C...U..G...A.A.G.C...U...CUU.A...A..G..A..C...U.......................G..A..C...CUU...GAA...GAA...GCUG...GUGCUUCU...G.....UAGAGAU....CAAGUA......A......G....U.U....A..U..A..A...U.U..U..AaC........................................U..U.A..C.U...A.A..G.CC.C.GA....G....U..A.A...........................UC.G..G.G..U..-..G
   NC_009901.1       GCU...A..U.....CUCU.A.A...A....G....A...A.GA...A....G..C...U..G...A.A.G.C...U...CUU.A...A..A..G..C...U.......................G..A..U...CUA...GAA...GCG...GCUG...GUGCUGCA...G.....UAGAGAU....CAAGUA......A......G....U.U....-..A..-..-...-.-..-..-.-uacuau.........................aacuua...-..-.C..A.A...C.C..U.CC.C.GA....G....U..A.A...........................UC.G..G.G..U..G..G
   NC_010002.1       GGC...G..U.....UGCC.A.A...G....G....C...U.GA...C....G..C...U..G...A.A.G.C..cG...CUG.U...G..A..A..G...A......................aG..C..U...--G...GUG...GAA...GCCG...GUGCCAAG...G.....CUGAACU....GAAGUA......A......U....U.C....A..G..U..C..cC.C..U..C.A.....................................a.gG..G.C..U.G...G.A..G.GC.U.CC....G....A..AaA...........................AG.G..G.C..C..U..C
   NC_010161.1       GGC...G..C.....UUCU.A.A...A....G....A...A.GA...G....G..C...G..G...A.A.A.A...A...AUU.A...A..A..U..C...U.......................C..A..A...CUU...GAA...GCA...GCUG...GUGCUAAA...G.....UUGAACU....UAAAUA......A......A....U.U....U..A..A..U...-.-..-..-.-........................................U..U.U..A.U...C.G..G.CG.A.AC....A....UugA.U...........................GU.U..C.G..C..C..G
   NC_010170.1       GGC...A..U.....CGCC.A.A...G....G....C...U.GA...C....G..C...C..G...A.A.G.C..cG..cCAA.G...A..A..G..A...A.......................G..C..U...--G...GAA...GAA...GCUG...GCGCCAAG...G.....UCGAAGU....CAAGUA......A......G....A.-....-..-..-..C...C.U..U..G.C........................................G..U.C..A.A...C.U..G.CC.C.GG....G....-..G.A...........................CA.G..C.G..C..A..G
   NC_010334.1       GCU...A..U.....CUCU.A.A...A....G....A...A.GA...A....G..C...U..G...A.U.G.C...U...CUU.A...A..A..G..C...U.......................G..A..U...CUU...GAA...GCA...GCUG...GUGCUGAA...G.....UAGAGAU....CAAGUA......A......G....U.U....-..-..-..-...-.-..-..-.-auacuaua.....................acuuacaa...-..-.-..-.A...C.C..U.CC.C.GA....G....U..A.A...........................UC.G..G.G..U..G..G
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   NZ_LR134386.1     GGU...G..U.....UUCU.A.A...A....G....A...C.GA...A....G..C...U..G...A.A.G.C...U...CUU.A...A..G..-..A...A.......................G..CaaU...UAG...-AA...GAA...GCUG...GUGCUGAA...G.....UAGAAUU....GAAAUA......A......U....U.U....U..-..-..-...-.-..-..-.-caauuuuau..................uauaaauaua...-..-.-..A.G...A.A..G.CC.U.GA....G....C..A.-auu.................agc....UC.A..G.G..C..U..U
   NZ_LR134441.1     GGU...A..U.....CUCU.A.A...A....G....A...C.GA...A....G..C...U..G...A.A.G.C...U...UUG.A...A..A..A..A...A......................cA..A..U...UAG...-AA...GAA...GCUG...GUGCUGAA...G.....UAGAAGU....UAAAUA......A......U....U.C....U..-..-..-...-.-..-..-.-acucgacc....................uuuuaauua...-..-.-..A.G...C.C..G.GU.U.CC....U....U..U.G...........................GG.A..A.G..C..G..G
   NZ_LR134494.1     GGC...A..U.....CAGC.A.A...A....G....A...C.GA...C....G..C...U..G...A.A.G.C...A...CUG.A...A..A..A..A...A.......................G..C..U...CUG...GAA...GAA...GCUG...GCGCUGAA...G.....UUGAAGU....UAAAUA......A......G....C.C....A..C..U.gC...U.U..U..C.U........................................G..A.G..U.G...C.A..G.UC.U.GU....U....-..-.-uua................acua....AC.A..G.A..C..U..G
   NZ_LR134503.1     GGU...A..U.....UUCU.A.A...A....G....A...C.GA...A....G..C...U..G...A.A.G.C...U...UUG.A...A..A..A..A...A......................cA..A..U...UAG...-AA...GAU...GCAG...GUGCAGAA...G.....UAGAAGU....AAAAUA......A......U....U.C....U..-..-..-...-.-..-..-.-cccacaacc...................uuauuauaa...-..-.-..A.G...C.C..G.UU.U.CC....U....G..A.A...........................GG.A..A.G..C..G..G
   NZ_LR134506.1     GGU...G..U.....AGAC.A.A...G....G....C...U.AC...A....G..C...U..G...A.U.G.C...U...CUC.A...A..G..G..C...A.......................G..C..U...CUA...GAA...GAA...GCAG...GCGCAGAG...G.....UUGAACU....UAAGUA......A......A....C.C....-..-..-..-...-.-..-..-.-gcc..............................cuuu...-..-.-..-.A...G.C..C.CU.G.UU....U....G..C.U...........................AA.C..A.G..G..A..U
   NZ_LR134510.1     GGU...A..U.....CUCU.A.A...A....G....C...U.GA...A....G..C...U..G...A.A.G.A...A...UUA.C...A..A..A..A...A.......................G..C..A...UUA...GAA...GAA...GCUG...GUGCUAAA...G.....UAGAAAU....CAAAUA......A......U....U.U....U..-..-..-...A.A..U..U.U........................................G..A.U..U.U...U.U..G.CC.U.GA....C....-..U.-...........................UU.A..G.G.cC..A..A
   NZ_LR134516.1     GGU...G..U.....UUCU.A.A...A....G....C...U.GA...A....G..C...U..G...A.A.GaU...A...UCC.A...A..A..-..A...A.......................C..A..A...UUG...GAA...GAA...GCUG...GCGCUAAA...G.....UCGAAAU....CAAAUA......A......U....U.U....U..A..U..U...C.U..G..U.U........................................G..U.U..A.A...A.G..G.CU.G.GC...aG....U..A.A.......................a.cuGC.C..A.G..C..C..U
   NZ_LR134518.1     GGU...G..C.....UAGC.A.A...A....G....A...U.GA...U....G..C...U..G...A.G.G.C...A...AUG.A...A..G..A..A...A.......................A..A..A...CUU...GAA...GAA...GCUG...GUGCUAAA...G.....UAGAAAU....CAAGUA......A......U....U.C....U..U..-..-...-.-..-..-.-guuuaaaau..................aaucuaaaaa...-..-.A..U.G...C.U..C.CU.A.GA....A....A..A.C...........................UC.U..A.G..G..G..G
   NZ_LR134523.1     GGC...G..C.....AAGC.A.A...G....G....A...A.GA...A....G..C...C..G...A.A.G.A...A...AUU.A...A..G..G..C...A.......................A..A..A...CUG...GAA...GAA...GUCG...GCGCUACC...G.....UCGAAGU....AAAGUA......A.....aG....C.G....A..-..-..-...-.-..-..-.-uaa..............................accg...-..-.-..U.C...C.C..G.CC.U.C-....-....-..-.-...........................-G.G..G.G..C..G..G
   NZ_LR134529.1     GGU...G..C.....UUCU.A.A...A....G....A...U.GA...A....G..C...A..G...A.A.A.A...A...---.A...U..U..A..A...A.......................U..C..UcagCUU...GAA...GCU...GCUG...GUGCUAAA...G.....UUGAACU....UAAAUA......A......A....U.-....-..-..U..U...G.U..U..U.U........................................A..A.-..-.U...C.G..G.CG.G.GC....A....-..-.-uu..................uau....GU.U..C.G..C..C..G
   NZ_LR134531.1     GGC...G..U.....UAGC.A.A...A....G....A...U.GA...C....G..C...U..G...A.A.G.C...U...CUG.A...A..G..A..A...A.......................G..C..U...CUG...GAA...GAA...GCAG...GCGCUUCU...G.....UUGAGGU....UAAGUA......A......G....A.C....C..U..C..U...U.U..C..C.A........................................G..U.U..U.G...C.A..G.CC.U.GA....C....U..U.A...........................-C.A..G.G..C..U..G
   NZ_LR134533.1     GGU...G..U.....UUCA.A.A...A....G....C...U.GA...A....G..C...U..G...A.A.GaU...A...UCC.A...A..A..A..-...A.......................C..A..A...UUG...GAA...GAA...GCUG...GCGCUAAA...G.....UUGAGAU....CAAAUA......A......U....U.G....G..A..A..Au.uA.U..U..C.C........................................-..-.A..U.C...A.A..G.GC.U.GG....C....-..-.-aguu..............uucug....CC.A..G.C..C..U..U
   NZ_LR215729.2     GGC...G..C.....UUCG.A.A...A....G....A...A.GA...A....G..C...U..G...A.A.G.C...C...GCU.A...A..G..A..A...G.......................G..U..U...CUG...GAA...GAA...GCUG...GCGCCAAA...G.....UCGAGCU....UAAGUA......A......G....CgA....A..G..A..C...C.U..U..G.C........................................G..U.C..U.A...C.A..G.CC.-.--....-....-..-.-cgagcgac.......ucgcguaa....--.-..G.G..C..U..G
   NZ_LR699007.1     GGU...G..U.....GAGC.A.A...A....G....A...U.GA...A....G..C...U..G...A.A.A.C...U...CUG.A...A..A..A..A...A.......................U..C..U...CUG...GAA...GAA...GCUG...GCGCGGAA...G.....UUGAAGU....UAAAUA......A......G....C.C....A..C..U..U...U.U..U..G.C........................................A..G.U..A.G...C.A..G.CC.U.--....G....A..A.A...........................A-.U..G.G..C..U..G
   NZ_LR890047.1     GGU...A..U.....UAGU.A.A...A....G....A...A.GA...U....G..C...U..G...A.A.A.A...U...AUG.A...A..A..A..A...A.......................U..C..U...CUA...GAA...GAA...GCGG...GGGCUGAA...G.....UUGAAAU....UAAAUA......A......U....A.U....A..G..C..U...A.U..U..C.U........................................A..G.C..U.G...C.A..U.CU.U.AA....A....C..A.A...........................CU.A..A.-..C..U..G
   NZ_LS483369.1     GGU...G..U.....UUCU.A.A...A....G....C...U.GA...A....G..C...U..G...A.A.G.A...C...AUC.C...A..A..A..A...A.......................C..A..A...CUG...GAA...GAA...GCCG...GCGCUAAA...G.....UCGAAAU....CAAAUA......A......U....U.U....G..A..U..G...C.U..U..C.C........................................U..A.U..G.A...A.G..G.CU.G.GC....-....-..-.-aguu...............uucu....GC.C..A.G..C..C..U
   NZ_LS483422.1     GCU...G..C.....AAGC.A.A...A....G....A...C.GA...A....G..C...U..G...A.G.U.C...A...CUG.A...A..G..A..A...A.......................C..U..U...CUU...GAA...GAA...GCAG...GCGCUACU...G.....CUGAACU....UAAAUA......A......G....U.U....C..A..A..A...U.U..C..A.A........................................G..U.U..A.G...C.A..G.CC.U.AA...cU....U..A.A...........................UU.A..G.G..C..U..G
   NZ_LS483429.1     GGC...G..U.....UUCU.A.A...A....G....A...A.GA...A....G..C...U..G...A.A.G.C...A...CUU.A...A..G..A..A...A.......................G..A..A...UUA...GAA...GAA...GCGG...GUGCAGAA...G.....UAGAAGU....UAAAUA......A......U....U.U....-..-..-..-...-.-..-..-.-cuauuuuaaccacu.........uuaaaauucaaaaa...-..-.-..-.A...A.C..C.GA.U.GG....G....A..A.A...........................CC.A..U.C..G..G..U
   NZ_LS483447.1     GGU...G..U.....AGAC.A.A...G....G....C...U.AC...A....G..C...U..G...A.G.G.C...U...CUC.A...A..G..A..A...A.......................G..C..U...CUC...GAA...GAA...GCCG...GCGCAGAA...G.....UUGAGCU....UAA---......-......G....U.A....A..A..A..G...C.U..-..-.C........................................C..U.U..U.U...G.G..G.CC.U.GA....-....A..U.A...........................UC.A..G.G..CuuC..C
   NZ_LS483458.1     GGU...G..U.....UUCU.A.A...A....G....A...A.GA...A....G..C...U..G...A.A.G.C...A...CUU.A...A..G..A..A...A.......................G..A..A...UUA...GAA...GAA...GCUG...GUGCACAA...G.....UAGAAGU....UAAAUA......A......U....U.U....C..U..C..U...U.-..-..-.-uuaaccacu...................uuaaaauuc...A..G.A..A.A...A.C..C.GA.U.GG....G....A..A.A...........................CC.A..U.C..G..G..U
   NZ_LS483470.1     GGC...A..U.....CAGC.A.A...A....G....A...U.GA...C....G..C...U..G...A.A.G.C...U...CUU.A...A..G..A..A...G.......................U..C..A...CUG...GAA...GAA...GCUG...GCGCGACC...G.....UUGAGGU....CAAGUA......A......G....A.C....U..U..U..U...U.U..C..C.A........................................G..U.U..U.G...C.A..G.CC.U.GA....C....U..U.A...........................AA.A..G.G..C..U..G
   NZ_LS483476.1     GGC...G..C.....GUCU.A.A...A....G....A...C.GA...A....G..C...U..G...A.A.G.A...A...AUC.A...A..A..GcgA...A.......................A..C..U...U--...GAA...GAA...GUUG...GCGCUGGU...G.....UAGAAGU....UAAGUA......A......U....U.A....U..G..A..U...G.U..G..-.A........................................A..U.U..A.A...A.A..G.CU.C.GC....-....-..-.-uguuu.............aucag....GC.G..G.G..C..U..U
   NZ_LT604074.1     GGC...G..U.....UGCU.A.A...G....G....A...C.GA...A....G..C...A..G...A.A.G.A...A...UUG.A...A..G..G..C...U.......................A..A..A...CUU...GAA...GAA...GUUG...GCGCAAAG...G.....UAACAUU....GAAAU-......-......-....-.A....A..U..U..U...A.U..U..U.U........................................A..A.U..U.U...U.A..C.UU.U.UA....G....A..G.A...........................UC.A..G.U..U..U..A
   NZ_LT615228.1     GGC...G..U.....UGAC.A.Ag.aA....G....A...CuGC...U....G..A...A..G...A.A.G.C...U...AAG.A...A..G..A..-...A.......................G..-..-...CUU...GAA...GAA...GCUG...GCGCUAAA...G.....CAGAACU....CAAGUA......A......U....A.C....A..A..A..C...A.C..-..-.U........................................G..C.U..G.G...C.G..C.CU.C.UC....A....C..A.-...........................AA.G..G.G..G..C..G
   NZ_LT615367.1     GCA...G..U.....GAGC.A.A...A....G....A...U.GA...C....G..C...U..G...A.A.G.C...U...CUG.A...A..A..A..A...A.......................U..C..U...CUG...GAA...GAA...GCUG...GCGCUGAA...G.....UUGAAGU....UAAAUA......A......G....C.C....A..A..C..C...C.U..U..C.U........................................G..G.U..U.G...C.A..G.CC.U.GA....U....U..C.G...........................UU.A..G.G..C..U..G
   NZ_LT897836.1     GGC...A..U.....GAGC.A.A...A....G....A...U.GA...U....G..C...U..G...A.U.G.U...A...CUU.A...A..G..A..A...A.......................G..U..U...UUG...GAA...GAA...GCGG...GGGCUUCU...A.....UUGAAGU....UAAAUA......A......Gu..gC.U....G.cA..C..C...U.U..G..C.A........................................G..G.U.uU.G...U.A..G.CC.U.UA....-....-..-.A...........................UU.A..G.G..C..U..G
   NZ_LT899436.1     GGA...G..U.....AUCU.A.A...A....G....A...U.GA...G....G..C...U..G...A.A.G.G...U...CUU.A...A..G..A..A...G.......................U..C..U...UUA...GAA...GAA...GCAG...GAGCUGAA...G.....UAGAGUU....AAAGUA......A......G....C.U....U..A..-..-...C.U..C..C.C........................................C..A.C..A.A...U.A..A.AG.U.GG....G....A..A.A...........................AC.A..A.A..A..U..A
   NZ_LT906434.1     GGU...G..U.....UUCU.A.A...A....G....C...U.GA...A....G..C...U..G...A.A.GaU...A...UCC.A...A..A..-..A...A.......................C..A..A...UUG...GAA...GAA...GCCG...GCGCUAAA...G.....UCGAAAU....CAAAUA......A......U...uC.C....A..U..U..U...U.A..A..A.G........................................A..A.A..A.G...G.C..U.GG.C.AG....U....U..U.U...........................CU.G..C.C..A..G..C
   NZ_LT906435.1     GGC...G..U.....CGAC.A.A...G....G....C...U.GC...U....G..C...U..G...A.A.G.A...A...GCC.A...A..G..A..A...G.......................A..A..G...CUG...GAA...GAA...GCCG...GCGCCAAG...G.....UCGAAGU....UAAGUA......A......U....U.C....G..G..C..U...C.U..-..-.-gcgcgu.........................agggaa...G..G.C..U.G...G.C..G.AC.G.--....-....A..A.A...........................--.C..G.U..C..G..U
   NZ_LT906442.1     GGU...G..U.....AUCU.A.A...A....G....A...U.GA...A....G..C...U..G..cU.A.G.C...A...UUA.A..gA..A..A..G...A.......................G..C..U...--U...GAA...GAA...GCUG...GCGCUACA...G.....UAGAAGU....UAAAUA......A......U....U.-....-..-..-..-...-.-..-..-.-aagacaucgcag.............uauauuuaaacc...-..-.-..-.-...C.A..G.CC.A.UG....U....U..U.U...........................CA.U..G.G..C..U..-
   NZ_LT906444.1     GGC...G..U.....UGCU.A.A...A....G....A...A.GA...A....G..C...U..G...A.A.G.A...A...AUC.A...A..A..GcuA...A.......................A..-..-...CUU...GAA...GAA...GUUG...GCGCUAAC...G.....UAGAAGU....UAAGUA......A......U....U.U....U..-..-..-...-.-..-..-.-g...................................u...-..-.-..U.A...A.G..A.CC.U.UA....G....A..-.-uacua............gcuauc....UA.A..G.G..U..C..U
   NZ_LT906470.1     GGC...G..U.....-AGCuG.C...U....G....A...U.GC...U....G..C...U..G...A.A.G.C...U...UUG.A...A..-..-..-...A.......................G..C..U...CAGuugGAA...GAA...GCUG...GCGCAACU...G.....UAGAAUU....GAAAUA......A......U....U.U....-..C..G..G...C.C..A..U.A........................................C..U.A..A.A...A.G..G.CG.U.AC....-....-..-.-cca.................ugg....GU.A..C.G..C..C..U
   NZ_LT906479.1     GGC...A..U.....CAGC.A.A...A....G....A...C.GA...C....G..C...U..G...A.A.G.C...U...CUG.A...A..A..A..A...A.......................U..C..U...CUG...GAA...GAA...GCUG...GUGCUUCU...G.....UUGAAGU....UAAAUA......A......G....U.U...uA..A..C..U...U.C..U..C.A........................................G..A.G..U.A...C.A..G.UC.U.GG....C....U..U.A...........................AC.A..G.A..C..U..G
   NZ_LT906482.1     GGC...G..U.....UACU.C.C...U....G....C...U.GA...A....G..C...U..G...A.A.G.A...A...AUC.A...A..G..A..A...A.......................C..A..G...CUG...GAA...GAA...GCUG...GCGCCAAA...G.....UGGAAAU....CAAAUA......A......G....U.A....U..U..U..U...C.U..C.gC.U........................................A..A.C..A.G...G.C..U.GG.C.AG....G....U..A.U...........................CU.G..C.C..A..G..C
   NZ_OU015321.1     GGU...G..C.....AUCU.A.A...A....G....A...U.GA...A....G..C...U..G...A.A.G.C...U...CUU.A...A..G..-..A...A.......................G..CaaU...UAG...-AA...GAA...GCUG...GUGCAGAA...G.....UAGAAUU....AAAAUA......A......U....C.U....A..U..U..U...A.C..A..C.C........................................G..U.A..U.A...A.G..A.CU.U.A-....-....-..-.-gaccuuccc.....aaaauuggg....-U.A..G.G..U..C..U
   NZ_OU594967.1     GCC...G..U.....UUCU.A.A...A....G....A...A.GA...A....G..C...U..G...A.A.-.-...-...CAG.C...U..U..A..A...A.......................G..C..U...CAGcuuGAA...GAA...GCUG...GUGCUGAA...G.....UUGAAGU....UAAGUA......A......U....C.U....G..-..-..-...-.-..-..-.-cguuau........................aguagau...-..-.-..U.A...C.A..G.CC.U.--....-....-..-.-gaaua............aggcau....--.U..G.G..C..U..G
   NZ_OU701459.1     GGU...G..U.....UGCU.A.A...A....G....C...A.GA...U....G..C...C..G...A.A.G.A...A...GCU.A...A..A..A..A...A....................c.aA..C..U...C--...GAA...GAA...GCUG...GUGCUAAG...G.....UCGAGUU....AAAA--......-......-....-.U....A..A..A..C...U.U..U.gA.A........................................G..U.U..U.A...A.G..G.GA.A.UU....G....U..A.A...........................AA.U..U.C..C..C..U


   Structure         (((...(..(......(((....................................(...(..(.....(.(.(....................................................)..)..)...)))...............)))....))))).................................................(....(..(..(..(......................................................)..).)..).)...(.(..(.((.(.((..........................................)).)..).)..)..)..)


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thrU-tyrU-glyT-thrT-tufB-secE-rplK-rplA-rplJ-rplL-rpoB-rpoC-nusG



Position: 5481-5565, Conformation: #0







97% 90% 75% 50% Nucleotide present N N N Nucleotide identify E < 0.1 Base-pair covariation E < 0.05 Helix-level covariation 97% 90% 75%

G G Y G U Y A A A G G A G C G A R G Y A A R R R Y U G A A G A A G C Y G G Y G C R G U G A R U Y A A R U A A Y 5'