thrU-tyrU-glyT-thrT-tufB-secE-rplK-rplA-rplJ-rplL-rpoB-rpoC-nusG



Position: 13988-14202, Conformation: #1







DMS reactivity > 1.0 0.0 0.4 0.7 G/U/No data
Position: 0 (position.label in template: 0.5')5' Position: 1 (position.label in template: 1.A) Reactivity: nanA Position: 2 (position.label in template: 2.A) Reactivity: nanA Position: 3 (position.label in template: 3.G) Reactivity: nanG Position: 4 (position.label in template: 4.C) Reactivity: nanC Position: 5 (position.label in template: 5.A) Reactivity: nanA Position: 6 (position.label in template: 6.G) Reactivity: nanG Position: 7 (position.label in template: 7.C) Reactivity: nanC Position: 8 (position.label in template: 8.C) Reactivity: nanC Position: 9 (position.label in template: 9.G) Reactivity: nanG Position: 10 (position.label in template: 10.U) Reactivity: nanU Position: 11 (position.label in template: 11.U) Reactivity: nanU Position: 12 (position.label in template: 12.G) Reactivity: nanG Position: 13 (position.label in template: 13.C) Reactivity: nanC Position: 14 (position.label in template: 14.G) Reactivity: nanG Position: 15 (position.label in template: 15.G) Reactivity: nanG Position: 16 (position.label in template: 16.G) Reactivity: nanG Position: 17 (position.label in template: 17.C) Reactivity: nanC Position: 18 (position.label in template: 18.A) Reactivity: nanA Position: 19 (position.label in template: 19.A) Reactivity: nanA Position: 20 (position.label in template: 20.A) Reactivity: nanA Position: 21 (position.label in template: 21.C) Reactivity: nanC Position: 22 (position.label in template: 22.G) Reactivity: nanG Position: 23 (position.label in template: 23.C) Reactivity: nanC Position: 24 (position.label in template: 24.G) Reactivity: nanG Position: 25 (position.label in template: 25.A) Reactivity: nanA Position: 26 (position.label in template: 26.C) Reactivity: nanC Position: 27 (position.label in template: 27.G) Reactivity: nanG Position: 28 (position.label in template: 28.A) Reactivity: nanA Position: 29 (position.label in template: 29.A) Reactivity: nanA Position: 30 (position.label in template: 30.C) Reactivity: nanC Position: 31 (position.label in template: 31.U) Reactivity: nanU Position: 32 (position.label in template: 32.G) Reactivity: nanG Position: 33 (position.label in template: 33.C) Reactivity: nanC Position: 34 (position.label in template: 34.G) Reactivity: nanG Position: 35 (position.label in template: 35.C) Reactivity: nanC Position: 36 (position.label in template: 36.G) Reactivity: nanG Position: 37 (position.label in template: 37.G) Reactivity: nanG Position: 38 (position.label in template: 38.C) Reactivity: nanC Position: 39 (position.label in template: 39.C) Reactivity: nanC Position: 40 (position.label in template: 40.U) Reactivity: nanU Position: 41 (position.label in template: 41.G) Reactivity: nanG Position: 42 (position.label in template: 42.A) Reactivity: nanA Position: 43 (position.label in template: 43.A) Reactivity: 0.5A Position: 44 (position.label in template: 44.A) Reactivity: 0.5A Position: 45 (position.label in template: 45.G) Reactivity: nanG Position: 46 (position.label in template: 46.A) Reactivity: 1A Position: 47 (position.label in template: 47.G) Reactivity: nanG Position: 48 (position.label in template: 48.A) Reactivity: 1A Position: 49 (position.label in template: 49.A) Reactivity: 0.5A Position: 50 (position.label in template: 50.C) Reactivity: 1C Position: 51 (position.label in template: 51.G) Reactivity: nanG Position: 52 (position.label in template: 52.U) Reactivity: nanU Position: 53 (position.label in template: 53.U) Reactivity: nanU Position: 54 (position.label in template: 54.A) Reactivity: 1A Position: 55 (position.label in template: 55.U) Reactivity: nanU Position: 56 (position.label in template: 56.C) Reactivity: 1C Position: 57 (position.label in template: 57.G) Reactivity: nanG Position: 58 (position.label in template: 58.U) Reactivity: nanU Position: 59 (position.label in template: 59.G) Reactivity: nanG Position: 60 (position.label in template: 60.G) Reactivity: nanG Position: 61 (position.label in template: 61.G) Reactivity: nanG Position: 62 (position.label in template: 62.U) Reactivity: nanU Position: 63 (position.label in template: 63.C) Reactivity: 0.5C Position: 64 (position.label in template: 64.G) Reactivity: nanG Position: 65 (position.label in template: 65.U) Reactivity: nanU Position: 66 (position.label in template: 66.C) Reactivity: 1C Position: 67 (position.label in template: 67.U) Reactivity: nanU Position: 68 (position.label in template: 68.G) Reactivity: nanG Position: 69 (position.label in template: 69.A) Reactivity: 0A Position: 70 (position.label in template: 70.U) Reactivity: nanU Position: 71 (position.label in template: 71.C) Reactivity: 0C Position: 72 (position.label in template: 72.C) Reactivity: 0C Position: 73 (position.label in template: 73.C) Reactivity: 0C Position: 74 (position.label in template: 74.G) Reactivity: nanG Position: 75 (position.label in template: 75.G) Reactivity: nanG Position: 76 (position.label in template: 76.C) Reactivity: 0.5C Position: 77 (position.label in template: 77.A) Reactivity: 0.5A Position: 78 (position.label in template: 78.G) Reactivity: nanG Position: 79 (position.label in template: 79.G) Reactivity: nanG Position: 80 (position.label in template: 80.U) Reactivity: nanU Position: 81 (position.label in template: 81.A) Reactivity: 0.5A Position: 82 (position.label in template: 82.C) Reactivity: 0.5C Position: 83 (position.label in template: 83.C) Reactivity: 0C Position: 84 (position.label in template: 84.G) Reactivity: nanG Position: 85 (position.label in template: 85.G) Reactivity: nanG Position: 86 (position.label in template: 86.U) Reactivity: nanU Position: 87 (position.label in template: 87.U) Reactivity: nanU Position: 88 (position.label in template: 88.A) Reactivity: 0A Position: 89 (position.label in template: 89.C) Reactivity: 1C Position: 90 (position.label in template: 90.G) Reactivity: nanG Position: 91 (position.label in template: 91.C) Reactivity: 0.5C Position: 92 (position.label in template: 92.G) Reactivity: nanG Position: 93 (position.label in template: 93.U) Reactivity: nanU Position: 94 (position.label in template: 94.A) Reactivity: 0A Position: 95 (position.label in template: 95.C) Reactivity: 0C Position: 96 (position.label in template: 96.C) Reactivity: 0C Position: 97 (position.label in template: 97.A) Reactivity: 1A Position: 98 (position.label in template: 98.C) Reactivity: 0C Position: 99 (position.label in template: 99.C) Reactivity: 0C Position: 100 (position.label in template: 100.A) Reactivity: 0A Position: 101 (position.label in template: 101.G) Reactivity: nanG Position: 102 (position.label in template: 102.G) Reactivity: nanG Position: 103 (position.label in template: 103.A) Reactivity: 0.5A Position: 104 (position.label in template: 104.U) Reactivity: nanU Position: 105 (position.label in template: 105.C) Reactivity: 0.5C Position: 106 (position.label in template: 106.G) Reactivity: nanG Position: 107 (position.label in template: 107.U) Reactivity: nanU Position: 108 (position.label in template: 108.A) Reactivity: 0A Position: 109 (position.label in template: 109.U) Reactivity: nanU Position: 110 (position.label in template: 110.G) Reactivity: nanG Position: 111 (position.label in template: 111.C) Reactivity: 0.5C Position: 112 (position.label in template: 112.G) Reactivity: nanG Position: 113 (position.label in template: 113.U) Reactivity: nanU Position: 114 (position.label in template: 114.C) Reactivity: 0C Position: 115 (position.label in template: 115.G) Reactivity: nanG Position: 116 (position.label in template: 116.C) Reactivity: 0.5C Position: 117 (position.label in template: 117.C) Reactivity: 0C Position: 118 (position.label in template: 118.G) Reactivity: nanG Position: 119 (position.label in template: 119.U) Reactivity: nanU Position: 120 (position.label in template: 120.G) Reactivity: nanG Position: 121 (position.label in template: 121.C) Reactivity: 0C Position: 122 (position.label in template: 122.U) Reactivity: nanU Position: 123 (position.label in template: 123.G) Reactivity: nanG Position: 124 (position.label in template: 124.C) Reactivity: 0.5C Position: 125 (position.label in template: 125.G) Reactivity: nanG Position: 126 (position.label in template: 126.G) Reactivity: nanG Position: 127 (position.label in template: 127.G) Reactivity: nanG Position: 128 (position.label in template: 128.U) Reactivity: nanU Position: 129 (position.label in template: 129.G) Reactivity: nanG Position: 130 (position.label in template: 130.A) Reactivity: 0.5A Position: 131 (position.label in template: 131.A) Reactivity: 0.5A Position: 132 (position.label in template: 132.G) Reactivity: nanG Position: 133 (position.label in template: 133.C) Reactivity: 0C Position: 134 (position.label in template: 134.U) Reactivity: nanU Position: 135 (position.label in template: 135.C) Reactivity: 1C Position: 136 (position.label in template: 136.C) Reactivity: 0C Position: 137 (position.label in template: 137.G) Reactivity: nanG Position: 138 (position.label in template: 138.G) Reactivity: nanG Position: 139 (position.label in template: 139.C) Reactivity: 0C Position: 140 (position.label in template: 140.U) Reactivity: nanU Position: 141 (position.label in template: 141.G) Reactivity: nanG Position: 142 (position.label in template: 142.C) Reactivity: 0C Position: 143 (position.label in template: 143.A) Reactivity: 0A Position: 144 (position.label in template: 144.C) Reactivity: 0C Position: 145 (position.label in template: 145.C) Reactivity: 0C Position: 146 (position.label in template: 146.G) Reactivity: nanG Position: 147 (position.label in template: 147.C) Reactivity: 0C Position: 148 (position.label in template: 148.A) Reactivity: 0A Position: 149 (position.label in template: 149.G) Reactivity: nanG Position: 150 (position.label in template: 150.G) Reactivity: nanG Position: 151 (position.label in template: 151.U) Reactivity: nanU Position: 152 (position.label in template: 152.G) Reactivity: nanG Position: 153 (position.label in template: 153.A) Reactivity: 1A Position: 154 (position.label in template: 154.C) Reactivity: 0C Position: 155 (position.label in template: 155.U) Reactivity: nanU Position: 156 (position.label in template: 156.G) Reactivity: nanG Position: 157 (position.label in template: 157.C) Reactivity: 0C Position: 158 (position.label in template: 158.A) Reactivity: 1A Position: 159 (position.label in template: 159.G) Reactivity: nanG Position: 160 (position.label in template: 160.A) Reactivity: 0.5A Position: 161 (position.label in template: 161.A) Reactivity: 0A Position: 162 (position.label in template: 162.G) Reactivity: nanG Position: 163 (position.label in template: 163.A) Reactivity: 1A Position: 164 (position.label in template: 164.C) Reactivity: 1C Position: 165 (position.label in template: 165.G) Reactivity: nanG Position: 166 (position.label in template: 166.C) Reactivity: 0C Position: 167 (position.label in template: 167.A) Reactivity: 1A Position: 168 (position.label in template: 168.U) Reactivity: nanU Position: 169 (position.label in template: 169.C) Reactivity: 0C Position: 170 (position.label in template: 170.U) Reactivity: nanU Position: 171 (position.label in template: 171.G) Reactivity: nanG Position: 172 (position.label in template: 172.C) Reactivity: 0C Position: 173 (position.label in template: 173.C) Reactivity: 0C Position: 174 (position.label in template: 174.A) Reactivity: 1A Position: 175 (position.label in template: 175.G) Reactivity: nanG Position: 176 (position.label in template: 176.C) Reactivity: 1C Position: 177 (position.label in template: 177.C) Reactivity: 0.5C Position: 178 (position.label in template: 178.U) Reactivity: nanU Position: 179 (position.label in template: 179.G) Reactivity: nanG Position: 180 (position.label in template: 180.G) Reactivity: nanG Position: 181 (position.label in template: 181.C) Reactivity: 0C Position: 182 (position.label in template: 182.A) Reactivity: 0A Position: 183 (position.label in template: 183.G) Reactivity: nanG Position: 184 (position.label in template: 184.A) Reactivity: 0.5A Position: 185 (position.label in template: 185.A) Reactivity: 1A Position: 186 (position.label in template: 186.C) Reactivity: 1C Position: 187 (position.label in template: 187.U) Reactivity: nanU Position: 188 (position.label in template: 188.G) Reactivity: nanG Position: 189 (position.label in template: 189.C) Reactivity: 0C Position: 190 (position.label in template: 190.U) Reactivity: nanU Position: 191 (position.label in template: 191.G) Reactivity: nanG Position: 192 (position.label in template: 192.A) Reactivity: 1A Position: 193 (position.label in template: 193.A) Reactivity: 1A Position: 194 (position.label in template: 194.C) Reactivity: 1C Position: 195 (position.label in template: 195.G) Reactivity: nanG Position: 196 (position.label in template: 196.C) Reactivity: 0C Position: 197 (position.label in template: 197.A) Reactivity: 0A Position: 198 (position.label in template: 198.G) Reactivity: nanG Position: 199 (position.label in template: 199.G) Reactivity: nanG Position: 200 (position.label in template: 200.U) Reactivity: nanU Position: 201 (position.label in template: 201.C) Reactivity: 0.5C Position: 202 (position.label in template: 202.U) Reactivity: nanU Position: 203 (position.label in template: 203.G) Reactivity: nanG Position: 204 (position.label in template: 204.G) Reactivity: nanG Position: 205 (position.label in template: 205.G) Reactivity: nanG Position: 206 (position.label in template: 206.C) Reactivity: 0C Position: 207 (position.label in template: 207.G) Reactivity: nanG Position: 208 (position.label in template: 208.G) Reactivity: nanG Position: 209 (position.label in template: 209.U) Reactivity: nanU Position: 210 (position.label in template: 210.U) Reactivity: nanU Position: 211 (position.label in template: 211.C) Reactivity: 0.5C Position: 212 (position.label in template: 212.U) Reactivity: nanU Position: 213 (position.label in template: 213.G) Reactivity: nanG Position: 214 (position.label in template: 214.A) Reactivity: nanA Position: 215 (position.label in template: 215.U) Reactivity: nanU Position: 216 (position.label in template: 216.A) Reactivity: nanA Position: 217 (position.label in template: 217.A) Reactivity: nanA Position: 218 (position.label in template: 218.C) Reactivity: nanC Position: 219 (position.label in template: 219.G) Reactivity: nanG Position: 220 (position.label in template: 220.A) Reactivity: nanA Position: 221 (position.label in template: 221.G) Reactivity: nanG Position: 222 (position.label in template: 222.U) Reactivity: nanU Position: 223 (position.label in template: 223.A) Reactivity: nanA Position: 224 (position.label in template: 224.A) Reactivity: nanA Position: 225 (position.label in template: 225.U) Reactivity: nanU Position: 226 (position.label in template: 226.C) Reactivity: nanC Position: 227 (position.label in template: 227.G) Reactivity: nanG Position: 228 (position.label in template: 228.U) Reactivity: nanU Position: 229 (position.label in template: 229.U) Reactivity: nanU Position: 230 (position.label in template: 230.A) Reactivity: nanA Position: 231 (position.label in template: 231.A) Reactivity: nanA Position: 232 (position.label in template: 232.U) Reactivity: nanU Position: 233 (position.label in template: 233.C) Reactivity: nanC Position: 234 (position.label in template: 234.C) Reactivity: nanC Position: 235 (position.label in template: 235.G) Reactivity: nanG Position: 236 (position.label in template: 236.C) Reactivity: nanC Position: 237 (position.label in template: 237.A) Reactivity: nanA Position: 238 (position.label in template: 238.A) Reactivity: nanA Position: 239 (position.label in template: 239.A) Reactivity: nanA Position: 240 (position.label in template: 240.U) Reactivity: nanU Position: 241 (position.label in template: 241.A) Reactivity: nanA Position: 242 (position.label in template: 242.A) Reactivity: nanA Position: 243 (position.label in template: 243.C) Reactivity: nanC Position: 244 (position.label in template: 244.G) Reactivity: nanG Position: 245 (position.label in template: 245.U) Reactivity: nanU Position: 246 (position.label in template: 246.A) Reactivity: nanA Position: 247 (position.label in template: 247.A) Reactivity: nanA Position: 248 (position.label in template: 248.A) Reactivity: nanA Position: 249 (position.label in template: 249.A) Reactivity: nanA Position: 250 (position.label in template: 250.A) Reactivity: nanA Position: 251 (position.label in template: 251.C) Reactivity: nanC Position: 252 (position.label in template: 252.C) Reactivity: nanC Position: 253 (position.label in template: 253.C) Reactivity: nanC Position: 254 (position.label in template: 254.G) Reactivity: nanG Position: 255 (position.label in template: 255.C) Reactivity: nanC Position: 256 (position.label in template: 256.3')3' 10 20 30 50 100 150 200 250


thrU-tyrU-glyT-thrT-tufB-secE-rplK-rplA-rplJ-rplL-rpoB-rpoC-nusG



Position: 13988-14202, Conformation: #1







Retained alignments:


   NC_003317.1       GCUGCGG.UU.GC.C.GGUAAGAU.GGACACGUUGCAG...GGUCUCAAGGAAAACGUCAUCGUCGGCCGUCUCAUCCCGGCCGGUAC.UGG..C.G...G.....................................................................................CA.UG.-AC...C.A.....A.CC.....A...GA.UC...CGUCG...CA...U..C.G-caacc............................................................gcgcg....C.GA...C...G.AA.C...U.G...AU.--....-....--.-.-.--............................................................................u...----...-.A..UC.G..ACG....-.-..AA...........................................................................CGU...C...G...C..AAGA..CUU..C..CGG.U..U.C..G..G..C.C.-...............................................G.A.A.GC.AAA.UGCGA.UG.Cu.gG..........................................................................U.UGA...U...AUG.ACC.AA...C...A.A..C.GC.U..G.CC.GA....AUAA..................................................................a..aUC.G..G....C.A...AA....-..C.G...G..U..A......A...A..C.U..GAA...A.A..AG....GC..C.G..C.C
   NC_005126.1       GCUGCGG.UU.GC.G.GGUAAACG.UGAUGAACUGCGU...GGCUUGAAAGAAAACGUCAUCGUUGGUCGUCUGAUCCCUGCUGGUAC.CGG..U.U...A.....................................................................................UG.CU.UAC...C.A.....U.CA.....G...GA.UC...GCAUA...CG...U..C.GU..........................................................................C.GC...-...C.AGuU...G.A...AU.GA....G....CC.U.G.CC................................................................................GAGG...C.A..CC.A..CAA....G.U..GA...........................................................................GUG...U...C...G..AUGA..GGC..U..ACU.G..C.G..A..A..C.U.U...............................................G.G.C.AG.AAC.UGUUG.AA.U...G..........................................................................C.CGG...U...UUU.GGU.GG...-...-.-..U.GA.U..A.AG.AA....GUAA......................................................................UU.C..U....U.A...GA....A..C.A...C..G.cU......A...G..C.U..AAU...A.A..AU....GC..C.C..U.C
   NC_007481.1       GCAGCAG.UG.AA.U.GGUAAGAG.CGAUGAGUUACGC...GGUCUGAAAGAAAACGUAAUAGUGGGUCGUUUGAUCCCAGCCGGUAC.CGG..C.U...U.....................................................................................UU.CG.UAU...C.A.....U.CA.....A...GA.AC...GUAUG...GC...U..C.GC..........................................................................C.GU...A...A.--.-...-.-...--.--....-....--.-.-.--gca......................................................................aaga...----...-.-..--.-..---....-.-..--aaug.................................................................uagu..---...-...A...G..AAGA..GCA..G..ACU.G..U.A..A..G..-.-.-...............................................U.G.C.AG.AAG.AGGCA.A-.-...-cuc.................................................................aag...C.GCU...A...ACU.GAU.GC...U...U.U..A.AA.U..G.CG.GA....UUUA......................................................................UC.U..G....G.A...AA....U..C.A..aU..A..A......A...C..C.A..AAC...C.A..AA....U-..-.-..-.-
   NC_007510.1       GCGGCGA.UC.AU.G.GGCAAGCG.CGACGAUCUGCGU...GGCCUGAAGGAAAACGUGAUCGUCGGCCGUCUGAUUCCGGCCGGUAC.GGG..U.C...U.....................................................................................CG.CG.UUC...C.A.....C.AA.....G...GC.AC...G----...--...-..-.--caagg...........................................................cgaagg....-.--...-...A.AU.C...G.U...CG.GA....U....CG.C.G.AG................................................................................CGUU...U.C..GA.C..CAG....A.U..CG...........................................................................CAG...C...G...G..AAGA..GGC..A..U--.-..-.-..-..-..-.-.-u............................................c.-.-.-.--.GAC.UUCGG.CA.C...G..........................................................................C.CGA...G...CGC.GCC.GG...C...A.-..-.--.-..-.--.--....----gaagagccg................................................cagcaacac....--.-..-....-.-...--....C..C.G...G..C..A......-...-..-.-..---...-.-..--....--..-.-..-.-
   NC_007614.1       GCGGCUA.UC.AU.G.GGCAAGAA.GGAUGAUCUGCGC...GGGCUGAAAGAAAACGUUAUUGUGGGACGCCUUAUUCCCGCAGGUAC.GGG..U.U...-.....................................................................................UG.--.-AC...C.U....uU.CA.....C...AA.UA..cGCGCA...AG...A..G.GC..........................................................................A.GC...G...C.CU.C...A.U...GC.UG....G....AU.A.C.CG................................................................................GGGA...A.G..CA.C..C--....-.-..--...........................................................................---...-...-...-..----..---..-..---.-..-.-..-..-..-.-.-uccuuugagugagg.................aagagacaggagaaa.-.-.-.--.---.-----.--.-...-uuagaaacagugg............................................auacgcugucugaa...-.--A...A...CAG.GCG.GG...G...A.A..A.GG.G..A.AG.CU....UGCG......................................................................AG.C..C....U.C...AU....C..C.U...G..C..U......-...-..-.-..---...-.-..--....--..-.-..-.-
   NC_007712.1       GCCGCUG.UG.GC.C.GGGAAACG.CGAUGAACUGCGC...GGCCUGAAGGAAAACGUCAUCGUCGGACGGUUAAUCCCGGCCGGUAC.CGG..U.U...A.....................................................................................CG.CU.UAU...C.A.....U.CA.....G...GA.AC...GCGCU...CG...C..C.AU..........................................................................C.GU...C...A.GC.A...G.G...GC.GA....A....GC.G.C.CG................................................................................GCCG...C.G..CC.G..CAG....A.U..UA...........................................................................CCG...C...C...G..AUGA..AGC..U..UCC.G..C.C..A..A..C.C.U...............................................G.G.C.UG.AAC.UGUUG.AA.U...G..........................................................................C.GGG...U...CUG.GGC.GG...-...-.-..C.AA.C..G.AC.GA....CUGA......................................................................UU.G..U....C.G...AU...aC..C.G...U..U..-......-...-..-.-..CCU...C.G..CC....GC..U.G..G.C
   NC_007908.1       GCGGCCA.UC.AU.G.GGUAAGCG.CGACGAAUUGCGC...GGCUUGAAAGAAAACGUCAUUGUGGGUCGACUGAUUCCUGCCGGUAC.CGG..C.A...U.....................................................................................GG.CU.UAU...C.A.....C.--.....G...AA.GC...CC---...--...-..-.--gc..................................................................aa....-.--...G...G.UU.C...G.C...--.--....-....--.-.-.--gagaacaugga.......................................................cgacacugagc...----...-.-..-G.C..CGG....G.C..CA...........................................................................UUG...C...C...G..AGGC..AGA..A..GCC.G..C.C..G..A..A.C.U...............................................G.G.C.GG.GUC.AGGC-.--.-...-agaggcaacggaagccaaugaaggagcagcagc.....cgaguaagaucggauugcuauguuaaacauagc...-.GCC...U...CAA.GCC.CG...U...U.-..-.--.-..-.--.--....----......................................................................--.-..-....-.-...--....-..-.-...-..-..-......-...-..-.-..---...-.-..--....--..-.-..-.-
   NC_008700.1       GCGGCUG.UU.GG.C.GGUAAGUC.CGACAACCUGCGC...GGUCUGAAAGAGAACGUUAUUGUGGGUCGUCUGAUCCCUGCCGGUAC.CGG..U.U...U.....................................................................................UG.CU.UAC...C.A.....C.AA.....G...AA.UC...GCGCC..aAG...G..C.GC..........................................................................-.GU...G...C.UU.C...U.G...GU.GA....A....GA.A.A.CU................................................................................GCGG...C.U..CC.G..---....-.-..--acc..................................................................auua..---...C...-...-..----..---..-..--U.G..C.C..A..G..-.-.-cgaagcuga............................gcagaaccu.G.G.C.GG.AUC.UGCUG.AA.U...-..........................................................................C.UGG...C...C--.GGU.AG...-...-.C..C.AA.G..A.GU.AA....GUUA......................................................................CC.A..C....U.-...--....-..-.-...-..-..-......-...-..-.-..---...-.-..--....--..-.-..-.-
   NC_008709.1       GCUGCUG.UU.GC.C.GGCAAGUG.UGAUCAAUUACAC...GGCCUGAAAGAGAAUGUUAUCGUUGGUCGUCUGAUUCCUGCCGGUAC.UGG..U.U...U.....................................................................................CG.CU.CAU...C.AuagagC.AA.....G...GG.CC...GCUGC...--...-..-.--ga..................................................................aa....G.CU...G...C.U-.-...-.-...--.--....-....--.-.-.--gaac.....................................................................uggc...----...-.-..--.-..---....-.-..--acca................................................................aaagu..---...-...U...G..AAGA..AAC..A..AUU.G..U.-..-..-..-.-.-agauacggguacag..................cugaacaaaacuua.-.G.C.UG.ACU.UGCUA.AA.U...G..........................................................................-.---...-...CUG.UUG.--...-...-.A..U.UU.U..G.GU.GA....UUAA......................................................................UC.A..C....U.A...AU....U..U.C...A..U..C......G...U..C.U..AUA...A.A..AA....AG..G.U..G.C
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   NZ_LR699007.1     GCGGCCG.UU.GC.G.GGUAAACG.CGACGAACUGCGC...GGUCUGAAAGAGAACGUCAUUGUGGGUCGCCUGAUCCCGGCCGGUAC.CGG..U.U...U.....................................................................................CG.CG.UAC...C.A.....C.CA.....G...GA.UC...GUAUC...CG...C..C.G-ccguca.........................................................ccuggca....G.AA...A...C.UG.C...C.-...--.GA....G....GC.-.-.--............................................................................a...GCAC...C.A..CA.G..CAG....G.U..CA...........................................................................GCG...C...U...G..AUGA..AGC..A..ACA.G..C.U..A..A..C.U.U...............................................A.G.C.UG.AGC.UUCUG.AA.C...G..........................................................................C.CGG...C...UUC.G--.--...-...-.-..-.--.-..-.--.--....----guggcagcaaagagua..................................agugauacagcaaugu....--.-..-....-.-...--....-..-.-...-..A..A......C...U..G.A..CUG...A.A..CA....GC..C.C..U.C
   NZ_LR890047.1     GCCGCCG.UU.GG.A.GGCAAGGA.AGAUGAAUUGCGU...GGUCUAAAAGAAAAUGUAAUUGUAGGGCGCCUGAUACCGGCUGGAAC.UGG..U.U...A.....................................................................................CG.CU.UAU...C.A.....UaCA.....G...-C.UC...GUGCA...CU...G..C.GU..........................................................................A.AA...G...C.UG.C...A.G...GA.GA....A....AC.G.U.CU................................................................................GCAC...U.U..CC.A..CAA....G.U..AA...........................................................................GCG...C...U...G..AAGA..AGC..A..ACU.G..C.U..A..A..U.C.U...............................................A.G.C.AG.AAU.UGCUA.AA.U...G..........................................................................C.AAG...U...AUA.AAC.AG...U...G.A..U.GA.A..C.--.-A....GUAA......................................................................UA.C..A....G.U...UU...gC..U.-...-..-..-......-...-..-.-..---...-.-..--....--..-.-..-.-
   NZ_LS483422.1     GCUGCAG.UA.GC.A.GGUAAACG.UGAUGAACUGCGC...GGUCUGAAAGAGAACGUUAUUGUUGGACGUCUGAUCCCUGCGGGUAC.UGG..U.U...U.....................................................................................UG.CG.UAU...C.A.....U.CA.....G...GA.AC...GUAUC...CG...U..C.GU..........................................................................C.GU...C...A.UC.U...G.A...AU.GA....U....GU.A.G.UG................................................................................GAAG...C.G..CC.A..CAA....G.U..CA...........................................................................GCG...C...A...G..AUGA..AGC..A..ACA.G..C.G..A..A..C.U.U...............................................G.G.C.UG.AAC.UGUUA.AA.U...G..........................................................................C.AGG...C...UUU.UCU.AG...C...A.A..G.UA.G..A.AC.GC....AUAC......................................................................UG.A..U....U.U...AG....C..U.-...-..-..-......-...-..-.-..---...-.-..--....--..-.-..-.-
   NZ_LS483429.1     GCAGCAG.UG.GC.A.GGUAAACG.UGAUGAAUUGCGU...GGCUUGAAAGAGAACGUAAUCGUAGGUCGUUUAAUCCCAGCAGGUAC.AGG..U.U...U.....................................................................................UG.CG.UAU...C.A.....U.CA.....A...AA.UCgucACAAA...CA...U..C.GU..........................................................................U.UA...G...U.UG.A...U.G...AU.G-....-....--.-.-.--ucguagcgaaauuaucu...........................................gaagaagaugaagcugc...----...U.A..UC.G..CUG....A.U..--gaauuu............................................................guuauga..CUG...C...A...G..AUGA..UGC..A..AGU.G..C.G..A..A..C.U.U...............................................A.G.C.UG.AAA.UGCUU.AA.C...A..........................................................................U.GGC...A...---.---.--...-...-.-..-.--.-..-.--.--....----gaugaugcgga...........................................auaauuaauucc....--.-..-....-.-...CU....-..-.G...U..A..-......-...-..-.-..---...-.-..--....--..-.-..-.-
   NZ_LS483443.1     GCAGCAG.UA.GC.A.GGUAAACG.CGAUGAAUUACGC...GGCUUGAAAGAAAACGUCAUCGUGGGUCGUCUGAUCCCGGCUGGUAC.CGG..U.U...U.....................................................................................UG.CG.UAU...C.A.....C.CA.....A...AA.UC...GUC--...--...-..-.--acaaaaacccggcaguuaucgcug.....................augaagaggugccgguaagauuauc....-.-G...G...C.UG.C...G.G...AU.GA....A....GA.A.G.AA................................................................................AUUG...C.U..UC.-..---....-.-..--ugaauucgu.......................................................uaugaccuc..---...-...U...G..AAGA..UGC..U..UCC.G..C.C..A..G..C.U.U...............................................A.A.C.UG.AAA.UGUUA.AA.CaugG..........................................................................U.AGA...A...GAU.GAC.GA...G...C.A..C.GC.G..G.AA.UA....---A......................................................................UA.U..U....C.C...-C....U..C.G...U..A..-......-...-..-.-..--U...A.A..AA....AC..C.C..G.A
   NZ_LS483458.1     GCAGCAG.UG.GC.A.GGUAAACG.UGAUGAAUUACGU...GGCUUGAAAGAGAACGUAAUUGUGGGCCGAUUAAUCCCUGCGGGUAC.AGG..U.U...U.....................................................................................UG.CG.UAU...C.A.....U.CA.....A...AA.UCgucACAAA...CA...U..C.GU..........................................................................U.UA...G...U.UG.A...U.G...AU.G-....-....--.-.-.--ucguagcgaaauuaucu...........................................gaagaagaugaagcugc...----...U.A..UC.G..CUG....A.U..--gaauuu............................................................gucauga..CUG...C...A...G..AUGA..UGC..A..AGU.G..C.A..A..A..C.U.U...............................................A.G.C.CG.AAA.UGCUU.AA.C...A..........................................................................U.GGC...A...---.---.--...-...-.-..-.GA.U..G.AU.GC....GGAA......................................................................UA.A..U....U.A...AU....U..CcC...U..A..U......A...U..A.A..---...G.A..AA....AC..C.C..G.A
   NZ_LS483470.1     GCGGCCG.UU.GC.U.GGCAAGCG.CGACGAACUGCGC...GGCUUGAAAGAGAACGUCAUCGUGGGUCGUCUGAUUCCGGCAGGUAC.CGG..C.U...A.....................................................................................UG.CC.UAC...C.A.....C.CA.....G...GA.UC...GCAUG...CGccgU..C.GC..........................................................................C.AU...A...U.AG.A...A.G...AU.AU....C....GC.U.U.CA................................................................................GCAC...-.-..-C.G..CAG....G.U..AA...........................................................................GUG...C...A...G..AAGA..GGC..A..UCA.G..C.U..A..A..U.C.U...............................................G.G.C.GG.AAC.UGCUA.AA.C...G..........................................................................C.CGG...U...CUG.GGC.AA...U...A.G..C.GA.C..G.AC.GA....AUAA......................................................................UC.G..A....C.G...CA....-..-.G...C..C..U......C...U..A.G..GCG...A.A..CG....UU..C.U..-.-
   NZ_LT605585.1     GCUGCGG.UU.GC.C.GGCAAGAU.GGAUACGUUGCAG...GGUCUCAAGGAAAACGUCAUCGUCGGUCGUCUCAUCCCGGCCGGUAC.UGG..C.G...G.....................................................................................CA.UG.-AC...C.A.....A.CC.....A...GA.UU...CGCCG...CA...U..C.GC......................................................................a..aC.CG...C...G.CG.C...G.-...--.--....-....--.-.-.--acgaacugauu......................................................aucgacgagcgc...----...-.-..--.-..---....-.-..--...........................................................................---...C...G...C..AAGA..CUU..C..CGG.U..U.C..G..G..C.C.G...............................................A.A.G.CC.AAU.GCGAU.GC.U...G..........................................................................G.UUG...A...UAU.GAC.CA..aC...A.A..C.GC.U..G.CC.GA....AUAA..................................................................a..aUC.G..G....C.A...AA....C..G.G...U..A..A......A...U..U.-..GAA...A.A..AG....GC..C.G..C.C
   NZ_LT615367.1     GCCGCGG.UU.GC.C.GGUAAACG.UGAUGAACUGCGU...GGCCUGAAAGAGAACGUCAUCGUCGGUCGUCUGAUCCCGGCCGGUAC.GGG..C.U...A.....................................................................................UG.CG.UAU...C.A.....U.CA.....G...GA.UC...GCAUG...CG...U..C.GC..........................................................................C.GU...C...A.GG.C...A.G...GC.GA....A....GU.U.C.AG................................................................................CCGA...C.A..CC.G..CAG....G.U..GA...........................................................................GUG...C...U...G..AAGA..AGC..C..UCC.G..C.C..A..A..C.C.U...............................................G.G.C.AG.AAC.UGUUG.AA.U...G..........................................................................C.CGG...U...CUG.GGU.GG...U...A.G..C.GA.C..G.AC.GA....GUAA......................................................................UC.G..U...uC.G...UC....U..C.A...U..G..U......C...U..G.C..UAC...A.G..GC....A-..-.-..-.-
   NZ_LT855380.1     GCAGCUG.UG.AC.U.GGCAAGCG.CGACUACCUGCGC...GGCCUGAAGGAGAACGUGGUCGUGGGUCGUCUGAUCCCGGCCGGUAC.CGG..U.C...U.....................................................................................GG.CU.UAU...C.A.....C.AG.....C...GA.GC...GCAAG...CG...U..C.GC..........................................................................C.GU...G...A.AA.U...G.G...AC.AA....A....--.-.-.--c..........................................................................cg...----...-.-..AU.G..CGU....G.U..CA...........................................................................GUG...C...G...A..GCGA..GGU..A..GAA.G..C.C..G..C..U.C.U...............................................G.A.C.UG.AAG.CGUUG.AA.C...U..........................................................................C.CAG...C..gGUA.AC-.--...-...-.-..-.--.U..G.AG.AC....UAAA......................................................................GC.C..U....C.G...--....-..-.-...-..-..-......-...-..-.-..---...-.-..--....--..-.-..-.-
   NZ_LT897836.1     GCCGCCG.UU.GC.C.GGUAAACG.AGAUGAACUACGC...GGCUUGAAAGAAAACGUGAUUGUUGGACGAUUAAUUCCCGCUGGUAC.UGG..U.U...A.....................................................................................UG.CU.UAU...C.A.....U.CA.....A...AA.AC...GCUUA...CG...U..C.AU......................................................................c..gU.CA...G...C.A-.-...U.G...AU.GG....G....GA.A.C.UA................................................................................GCCA...C.A..CC.A..CAG....A.U..UA...........................................................................CCG...C...C...G..AUGA..AGC..U..UCC.G..C.A..A..A..U.U.U...............................................G.G.C.UG.AUC.UGCUG.AA.C...G..........................................................................C.AGG...U...UUG.GGU.GC...U...A.A..U.AA.-..-.-C.GA....----uugauuaucg..............................................guacuugcuu....UC.G..C....U.G...CU....-..A.U...C..U..A......A...U..A.-..---...-.-..--....--..-.-..-.-
   NZ_LT906448.1     GCUGCAG.UU.GC.G.GGUAAACG.UGAUGAAUUGCGU...GGCUUGAAAGAGAAUGUAAUCGUCGGUCGCUUAAUCCCUGCUGGUAC.AGG..U.U...U.....................................................................................CG.CA.UAU...C.A.....C.CA.....A...AA.UC...GU---...--...-..-.--cagaagaaagugaugaugagag.........................augaaaugccaguuaaauuauca....-.--...G...C.AG.C...A.G...AU.GA....A....G-.-.-.--aag.......................................................................aaa...-UUG...C.A..--.G..CAG....-.-..--aauuua.............................................................cuguua..CUG...C...A...G..AAGA..UGC..A..ACA.G..C.A..A..G..U.U.U...............................................A.G.C.AG.AAA.UGUUA.AA.U...A..........................................................................U.--G...G...CUG.---.--...-...-.A..U.GA.U..G.CA.GA....AUAA......................................................................UC.U..A....C.A...UU....-..-.-...-..A..A......A...C..A.-..--A...A.A..AA....AC..C.C..G.A
   NZ_LT906463.1     GCCGCUG.UG.GC.A.GGUAAACG.CGAUGAAUUGCGU...GGUUUGAAAGAGAACGUUAUCGUUGGUCGUUUAAUUCCAGCCGGUAC.CGG..U.U...U.....................................................................................UG.CG.UAU...C.A.....C.CA.....A...AA.UC...GUC--...--...-..-.--..........................................................................-.--...-...-.--.-...-.-...--.--....-....--.-.-.--acaaaaaccguuugg...............................................uugacgauguugucg...----...-.-..--.-..---....-.-..--ugaaauuau......................................................cggaagauga..---...-...U...G..AACA..GGC..A..AUU.G..C.C..-..-..-.-.-gaugaguucgugaugagugc.....cgaugaugccaccagcaauuu.G.G.C.AG.AAA.UGCUG.AA.U...A..........................................................................U.GGC...-...---.---.GG...-...-.A..U.GA.U..G.CG.GA....AUAA......................................................................UC.-..G....C.A...AU....C..C.U...-..A..A......U...C..A.A..C--...A.A..AC....CC..C.-..-.-
   NZ_LT906479.1     GCUGCCG.UA.GC.C.GGCAAGCG.CGAUGAACUGCGU...GGCCUGAAAGAGAACGUCAUCGUGGGCCGUCUGAUCCCAGCCGGUAC.CGG..U.U...A.....................................................................................CG.CU.UAU...C.A.....U.CA.....G...GA.CC...GCAUG...CG...C..C.GU..........................................................................C.GU...G...C.AC.A...G.G...GC.GA....A....GC.G.C.CG................................................................................GUUG...U.U..CC.G..CAG....G.U..GA...........................................................................GCG...C...G...G..AAGA..AGC..G..ACA.G..C.C..A..A..C.C.U...............................................G.G.C.CG.AAC.UGCUC.AA.U...G..........................................................................C.AGG...CaacCUG.GGC.GG...C...A.G..C.GA.C..G.AC.GA....GUAA......................................................................UC.G..U....U.G...AAcgcgC..C.G...C..G..G......G...U..C.C..GG-...-.C..UU....GC..C.-..-.-


   Structure         ((((.((.((.((.(.......)).)))))..))))..........................((((((.....(((((.((..(((((.((...............................................................................................))..).)))...).......).)......)...)).))...(((((.........................................................................................).))...)...)..........(...((.(..........((.......................................................................................)).....).)..)).(..(((......................................................................................)))...).........................((.(..(.(............................................................).).).)).......(((...................................................................................).)).............((.((.................(..(.((.((..............................................................................)).)..)....).).........)..).)...).........................................))..).)..).)


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thrU-tyrU-glyT-thrT-tufB-secE-rplK-rplA-rplJ-rplL-rpoB-rpoC-nusG



Position: 13988-14202, Conformation: #1







97% 90% 75% 50% Nucleotide present N N N Nucleotide identify E < 0.1 Base-pair covariation E < 0.05 Helix-level covariation 97% 90% 75%

G C G C G U R G G Y A A R R Y G A Y R A Y U R C G Y G G Y C U G A A R G A R A A C G U A U Y G U G G Y C G Y Y U G A U Y C C G C G G U A C G G Y Y Y G C U A Y C A Y A R R A C G G A R R G Y R Y G Y Y Y R 5'