thrU-tyrU-glyT-thrT-tufB-secE-rplK-rplA-rplJ-rplL-rpoB-rpoC-nusG



Position: 13988-14202, Conformation: #0







DMS reactivity > 1.0 0.0 0.4 0.7 G/U/No data
Position: 0 (position.label in template: 0.5')5' Position: 1 (position.label in template: 1.A) Reactivity: nanA Position: 2 (position.label in template: 2.A) Reactivity: nanA Position: 3 (position.label in template: 3.G) Reactivity: nanG Position: 4 (position.label in template: 4.C) Reactivity: nanC Position: 5 (position.label in template: 5.A) Reactivity: nanA Position: 6 (position.label in template: 6.G) Reactivity: nanG Position: 7 (position.label in template: 7.C) Reactivity: nanC Position: 8 (position.label in template: 8.C) Reactivity: nanC Position: 9 (position.label in template: 9.G) Reactivity: nanG Position: 10 (position.label in template: 10.U) Reactivity: nanU Position: 11 (position.label in template: 11.U) Reactivity: nanU Position: 12 (position.label in template: 12.G) Reactivity: nanG Position: 13 (position.label in template: 13.C) Reactivity: nanC Position: 14 (position.label in template: 14.G) Reactivity: nanG Position: 15 (position.label in template: 15.G) Reactivity: nanG Position: 16 (position.label in template: 16.G) Reactivity: nanG Position: 17 (position.label in template: 17.C) Reactivity: nanC Position: 18 (position.label in template: 18.A) Reactivity: nanA Position: 19 (position.label in template: 19.A) Reactivity: nanA Position: 20 (position.label in template: 20.A) Reactivity: nanA Position: 21 (position.label in template: 21.C) Reactivity: nanC Position: 22 (position.label in template: 22.G) Reactivity: nanG Position: 23 (position.label in template: 23.C) Reactivity: nanC Position: 24 (position.label in template: 24.G) Reactivity: nanG Position: 25 (position.label in template: 25.A) Reactivity: nanA Position: 26 (position.label in template: 26.C) Reactivity: nanC Position: 27 (position.label in template: 27.G) Reactivity: nanG Position: 28 (position.label in template: 28.A) Reactivity: nanA Position: 29 (position.label in template: 29.A) Reactivity: nanA Position: 30 (position.label in template: 30.C) Reactivity: nanC Position: 31 (position.label in template: 31.U) Reactivity: nanU Position: 32 (position.label in template: 32.G) Reactivity: nanG Position: 33 (position.label in template: 33.C) Reactivity: nanC Position: 34 (position.label in template: 34.G) Reactivity: nanG Position: 35 (position.label in template: 35.C) Reactivity: nanC Position: 36 (position.label in template: 36.G) Reactivity: nanG Position: 37 (position.label in template: 37.G) Reactivity: nanG Position: 38 (position.label in template: 38.C) Reactivity: nanC Position: 39 (position.label in template: 39.C) Reactivity: nanC Position: 40 (position.label in template: 40.U) Reactivity: nanU Position: 41 (position.label in template: 41.G) Reactivity: nanG Position: 42 (position.label in template: 42.A) Reactivity: nanA Position: 43 (position.label in template: 43.A) Reactivity: 1A Position: 44 (position.label in template: 44.A) Reactivity: 1A Position: 45 (position.label in template: 45.G) Reactivity: nanG Position: 46 (position.label in template: 46.A) Reactivity: 0A Position: 47 (position.label in template: 47.G) Reactivity: nanG Position: 48 (position.label in template: 48.A) Reactivity: 1A Position: 49 (position.label in template: 49.A) Reactivity: 1A Position: 50 (position.label in template: 50.C) Reactivity: 0C Position: 51 (position.label in template: 51.G) Reactivity: nanG Position: 52 (position.label in template: 52.U) Reactivity: nanU Position: 53 (position.label in template: 53.U) Reactivity: nanU Position: 54 (position.label in template: 54.A) Reactivity: 0.5A Position: 55 (position.label in template: 55.U) Reactivity: nanU Position: 56 (position.label in template: 56.C) Reactivity: 1C Position: 57 (position.label in template: 57.G) Reactivity: nanG Position: 58 (position.label in template: 58.U) Reactivity: nanU Position: 59 (position.label in template: 59.G) Reactivity: nanG Position: 60 (position.label in template: 60.G) Reactivity: nanG Position: 61 (position.label in template: 61.G) Reactivity: nanG Position: 62 (position.label in template: 62.U) Reactivity: nanU Position: 63 (position.label in template: 63.C) Reactivity: 0.5C Position: 64 (position.label in template: 64.G) Reactivity: nanG Position: 65 (position.label in template: 65.U) Reactivity: nanU Position: 66 (position.label in template: 66.C) Reactivity: 0C Position: 67 (position.label in template: 67.U) Reactivity: nanU Position: 68 (position.label in template: 68.G) Reactivity: nanG Position: 69 (position.label in template: 69.A) Reactivity: 0A Position: 70 (position.label in template: 70.U) Reactivity: nanU Position: 71 (position.label in template: 71.C) Reactivity: 0C Position: 72 (position.label in template: 72.C) Reactivity: 0C Position: 73 (position.label in template: 73.C) Reactivity: 0C Position: 74 (position.label in template: 74.G) Reactivity: nanG Position: 75 (position.label in template: 75.G) Reactivity: nanG Position: 76 (position.label in template: 76.C) Reactivity: 0C Position: 77 (position.label in template: 77.A) Reactivity: 1A Position: 78 (position.label in template: 78.G) Reactivity: nanG Position: 79 (position.label in template: 79.G) Reactivity: nanG Position: 80 (position.label in template: 80.U) Reactivity: nanU Position: 81 (position.label in template: 81.A) Reactivity: 0A Position: 82 (position.label in template: 82.C) Reactivity: 0C Position: 83 (position.label in template: 83.C) Reactivity: 0C Position: 84 (position.label in template: 84.G) Reactivity: nanG Position: 85 (position.label in template: 85.G) Reactivity: nanG Position: 86 (position.label in template: 86.U) Reactivity: nanU Position: 87 (position.label in template: 87.U) Reactivity: nanU Position: 88 (position.label in template: 88.A) Reactivity: 1A Position: 89 (position.label in template: 89.C) Reactivity: 0C Position: 90 (position.label in template: 90.G) Reactivity: nanG Position: 91 (position.label in template: 91.C) Reactivity: 0.5C Position: 92 (position.label in template: 92.G) Reactivity: nanG Position: 93 (position.label in template: 93.U) Reactivity: nanU Position: 94 (position.label in template: 94.A) Reactivity: 0A Position: 95 (position.label in template: 95.C) Reactivity: 0C Position: 96 (position.label in template: 96.C) Reactivity: 0C Position: 97 (position.label in template: 97.A) Reactivity: 1A Position: 98 (position.label in template: 98.C) Reactivity: 0C Position: 99 (position.label in template: 99.C) Reactivity: 0C Position: 100 (position.label in template: 100.A) Reactivity: 0A Position: 101 (position.label in template: 101.G) Reactivity: nanG Position: 102 (position.label in template: 102.G) Reactivity: nanG Position: 103 (position.label in template: 103.A) Reactivity: 0A Position: 104 (position.label in template: 104.U) Reactivity: nanU Position: 105 (position.label in template: 105.C) Reactivity: 0C Position: 106 (position.label in template: 106.G) Reactivity: nanG Position: 107 (position.label in template: 107.U) Reactivity: nanU Position: 108 (position.label in template: 108.A) Reactivity: 1A Position: 109 (position.label in template: 109.U) Reactivity: nanU Position: 110 (position.label in template: 110.G) Reactivity: nanG Position: 111 (position.label in template: 111.C) Reactivity: 0C Position: 112 (position.label in template: 112.G) Reactivity: nanG Position: 113 (position.label in template: 113.U) Reactivity: nanU Position: 114 (position.label in template: 114.C) Reactivity: 0C Position: 115 (position.label in template: 115.G) Reactivity: nanG Position: 116 (position.label in template: 116.C) Reactivity: 0C Position: 117 (position.label in template: 117.C) Reactivity: 0C Position: 118 (position.label in template: 118.G) Reactivity: nanG Position: 119 (position.label in template: 119.U) Reactivity: nanU Position: 120 (position.label in template: 120.G) Reactivity: nanG Position: 121 (position.label in template: 121.C) Reactivity: 1C Position: 122 (position.label in template: 122.U) Reactivity: nanU Position: 123 (position.label in template: 123.G) Reactivity: nanG Position: 124 (position.label in template: 124.C) Reactivity: 0C Position: 125 (position.label in template: 125.G) Reactivity: nanG Position: 126 (position.label in template: 126.G) Reactivity: nanG Position: 127 (position.label in template: 127.G) Reactivity: nanG Position: 128 (position.label in template: 128.U) Reactivity: nanU Position: 129 (position.label in template: 129.G) Reactivity: nanG Position: 130 (position.label in template: 130.A) Reactivity: 1A Position: 131 (position.label in template: 131.A) Reactivity: 0A Position: 132 (position.label in template: 132.G) Reactivity: nanG Position: 133 (position.label in template: 133.C) Reactivity: 0C Position: 134 (position.label in template: 134.U) Reactivity: nanU Position: 135 (position.label in template: 135.C) Reactivity: 1C Position: 136 (position.label in template: 136.C) Reactivity: 1C Position: 137 (position.label in template: 137.G) Reactivity: nanG Position: 138 (position.label in template: 138.G) Reactivity: nanG Position: 139 (position.label in template: 139.C) Reactivity: 0C Position: 140 (position.label in template: 140.U) Reactivity: nanU Position: 141 (position.label in template: 141.G) Reactivity: nanG Position: 142 (position.label in template: 142.C) Reactivity: 0C Position: 143 (position.label in template: 143.A) Reactivity: 0A Position: 144 (position.label in template: 144.C) Reactivity: 0C Position: 145 (position.label in template: 145.C) Reactivity: 0C Position: 146 (position.label in template: 146.G) Reactivity: nanG Position: 147 (position.label in template: 147.C) Reactivity: 0C Position: 148 (position.label in template: 148.A) Reactivity: 0.5A Position: 149 (position.label in template: 149.G) Reactivity: nanG Position: 150 (position.label in template: 150.G) Reactivity: nanG Position: 151 (position.label in template: 151.U) Reactivity: nanU Position: 152 (position.label in template: 152.G) Reactivity: nanG Position: 153 (position.label in template: 153.A) Reactivity: 0A Position: 154 (position.label in template: 154.C) Reactivity: 0C Position: 155 (position.label in template: 155.U) Reactivity: nanU Position: 156 (position.label in template: 156.G) Reactivity: nanG Position: 157 (position.label in template: 157.C) Reactivity: 0C Position: 158 (position.label in template: 158.A) Reactivity: 0A Position: 159 (position.label in template: 159.G) Reactivity: nanG Position: 160 (position.label in template: 160.A) Reactivity: 1A Position: 161 (position.label in template: 161.A) Reactivity: 0.5A Position: 162 (position.label in template: 162.G) Reactivity: nanG Position: 163 (position.label in template: 163.A) Reactivity: 0A Position: 164 (position.label in template: 164.C) Reactivity: 0C Position: 165 (position.label in template: 165.G) Reactivity: nanG Position: 166 (position.label in template: 166.C) Reactivity: 0.5C Position: 167 (position.label in template: 167.A) Reactivity: 0.5A Position: 168 (position.label in template: 168.U) Reactivity: nanU Position: 169 (position.label in template: 169.C) Reactivity: 0C Position: 170 (position.label in template: 170.U) Reactivity: nanU Position: 171 (position.label in template: 171.G) Reactivity: nanG Position: 172 (position.label in template: 172.C) Reactivity: 0C Position: 173 (position.label in template: 173.C) Reactivity: 0C Position: 174 (position.label in template: 174.A) Reactivity: 1A Position: 175 (position.label in template: 175.G) Reactivity: nanG Position: 176 (position.label in template: 176.C) Reactivity: 0C Position: 177 (position.label in template: 177.C) Reactivity: 0C Position: 178 (position.label in template: 178.U) Reactivity: nanU Position: 179 (position.label in template: 179.G) Reactivity: nanG Position: 180 (position.label in template: 180.G) Reactivity: nanG Position: 181 (position.label in template: 181.C) Reactivity: 0C Position: 182 (position.label in template: 182.A) Reactivity: 0A Position: 183 (position.label in template: 183.G) Reactivity: nanG Position: 184 (position.label in template: 184.A) Reactivity: 0.5A Position: 185 (position.label in template: 185.A) Reactivity: 1A Position: 186 (position.label in template: 186.C) Reactivity: 0.5C Position: 187 (position.label in template: 187.U) Reactivity: nanU Position: 188 (position.label in template: 188.G) Reactivity: nanG Position: 189 (position.label in template: 189.C) Reactivity: 0C Position: 190 (position.label in template: 190.U) Reactivity: nanU Position: 191 (position.label in template: 191.G) Reactivity: nanG Position: 192 (position.label in template: 192.A) Reactivity: 1A Position: 193 (position.label in template: 193.A) Reactivity: 1A Position: 194 (position.label in template: 194.C) Reactivity: 0.5C Position: 195 (position.label in template: 195.G) Reactivity: nanG Position: 196 (position.label in template: 196.C) Reactivity: 0C Position: 197 (position.label in template: 197.A) Reactivity: 0A Position: 198 (position.label in template: 198.G) Reactivity: nanG Position: 199 (position.label in template: 199.G) Reactivity: nanG Position: 200 (position.label in template: 200.U) Reactivity: nanU Position: 201 (position.label in template: 201.C) Reactivity: 0C Position: 202 (position.label in template: 202.U) Reactivity: nanU Position: 203 (position.label in template: 203.G) Reactivity: nanG Position: 204 (position.label in template: 204.G) Reactivity: nanG Position: 205 (position.label in template: 205.G) Reactivity: nanG Position: 206 (position.label in template: 206.C) Reactivity: 0C Position: 207 (position.label in template: 207.G) Reactivity: nanG Position: 208 (position.label in template: 208.G) Reactivity: nanG Position: 209 (position.label in template: 209.U) Reactivity: nanU Position: 210 (position.label in template: 210.U) Reactivity: nanU Position: 211 (position.label in template: 211.C) Reactivity: 0.5C Position: 212 (position.label in template: 212.U) Reactivity: nanU Position: 213 (position.label in template: 213.G) Reactivity: nanG Position: 214 (position.label in template: 214.A) Reactivity: nanA Position: 215 (position.label in template: 215.U) Reactivity: nanU Position: 216 (position.label in template: 216.A) Reactivity: nanA Position: 217 (position.label in template: 217.A) Reactivity: nanA Position: 218 (position.label in template: 218.C) Reactivity: nanC Position: 219 (position.label in template: 219.G) Reactivity: nanG Position: 220 (position.label in template: 220.A) Reactivity: nanA Position: 221 (position.label in template: 221.G) Reactivity: nanG Position: 222 (position.label in template: 222.U) Reactivity: nanU Position: 223 (position.label in template: 223.A) Reactivity: nanA Position: 224 (position.label in template: 224.A) Reactivity: nanA Position: 225 (position.label in template: 225.U) Reactivity: nanU Position: 226 (position.label in template: 226.C) Reactivity: nanC Position: 227 (position.label in template: 227.G) Reactivity: nanG Position: 228 (position.label in template: 228.U) Reactivity: nanU Position: 229 (position.label in template: 229.U) Reactivity: nanU Position: 230 (position.label in template: 230.A) Reactivity: nanA Position: 231 (position.label in template: 231.A) Reactivity: nanA Position: 232 (position.label in template: 232.U) Reactivity: nanU Position: 233 (position.label in template: 233.C) Reactivity: nanC Position: 234 (position.label in template: 234.C) Reactivity: nanC Position: 235 (position.label in template: 235.G) Reactivity: nanG Position: 236 (position.label in template: 236.C) Reactivity: nanC Position: 237 (position.label in template: 237.A) Reactivity: nanA Position: 238 (position.label in template: 238.A) Reactivity: nanA Position: 239 (position.label in template: 239.A) Reactivity: nanA Position: 240 (position.label in template: 240.U) Reactivity: nanU Position: 241 (position.label in template: 241.A) Reactivity: nanA Position: 242 (position.label in template: 242.A) Reactivity: nanA Position: 243 (position.label in template: 243.C) Reactivity: nanC Position: 244 (position.label in template: 244.G) Reactivity: nanG Position: 245 (position.label in template: 245.U) Reactivity: nanU Position: 246 (position.label in template: 246.A) Reactivity: nanA Position: 247 (position.label in template: 247.A) Reactivity: nanA Position: 248 (position.label in template: 248.A) Reactivity: nanA Position: 249 (position.label in template: 249.A) Reactivity: nanA Position: 250 (position.label in template: 250.A) Reactivity: nanA Position: 251 (position.label in template: 251.C) Reactivity: nanC Position: 252 (position.label in template: 252.C) Reactivity: nanC Position: 253 (position.label in template: 253.C) Reactivity: nanC Position: 254 (position.label in template: 254.G) Reactivity: nanG Position: 255 (position.label in template: 255.C) Reactivity: nanC Position: 256 (position.label in template: 256.3')3' 10 20 30 50 100 150 200 250


thrU-tyrU-glyT-thrT-tufB-secE-rplK-rplA-rplJ-rplL-rpoB-rpoC-nusG



Position: 13988-14202, Conformation: #0







Retained alignments:


   NC_003910.7       GCUG.CU.G.U.U.GCA.GGUAAG..AAAGAU..GGU...CUAC.GUG...GCUUGAAAGAAAACGUUAUCGUUGGUCGUUUAAU.CCCAGC...AGGUAC.AG.GU.U...A...............................................................................UUC.GUA.C...CA......U.C.A.....AG..A..AC.G....A........-..-GC.-...-..--.--....-.-....--..AA.G...A.C...G..UA..AA.GC.U.G...C...U.....................................................................................................GCU..U......U..A......G-.-.-.-....-.-.-....-.--..--C...-..A.C..C..AGC..G.GUUG.A.A..U.C..U.A..-....CU..................................................................................GU.U.UC.A.G...C..U..GA..UG..A-.-ugcagaaaaagcauu..............................................................aacugaugccuuaaau....UC..A.GA...U...UU.A....C..U---....--...-..-.-..-..--.---.-..---.-................................................................................--.-.-....-.-..-.-....-..-..-...-..-...-......-.--.---..-...-..-.-.-...--..-.-..--
   NC_004603.1       GCUG.CG.G.U.U.UCU.GGUAAG..CGUGAU..GAC...CUAC.GUG...GUCUGAAAGAGAACGUAAUUGUUGGUCGUCUGAU.CCCAGC...UGGUAC.UG.GU.U...U...............................................................................CGC.AUA.C...CA......C.C.A.....AG..A..GC.G....U.......cA..AGC.-...-..--.--....-.-....--..--.-...-.-...-..--..--.--.-.-...-...-uaaacgugcugaagc......................................................................gcaagaagguccauc.---..-......-..-......--.-.-.-....-.-.-....-.--..UGC...U..G.A..A..CAA..G.CAAC.A.G..A.U..A.A..C....CU..................................................................................AG.C.AG.C.A...C..U..UC..UA..AA.C.................................................................................................GC..U.GG...C...UU.-....-..----....CU...C..U.U..C..UG.ACG.A..GUA.A................................................................................UC.G.U....U.A..A.G....A..G..C...U..U...A......A.AA.GAA..A...A..G.G.C...AC..C.U..UC
   NC_005126.1       GCUG.CG.G.U.U.GCG.GGUAAA..CGUGAU..GAA...CUGC.GUG...GCUUGAAAGAAAACGUCAUCGUUGGUCGUCUGAU.CCCUGC...UGGUAC.CG.GU.U...A...............................................................................UGC.UUA.C...CA......U.C.A.....GG..A..UC.G....C........A..UAC.G...U..CG.UC....G.C....CA..GU.U...G.A...A..UG..AG.CC.U.G...C...C.....................................................................................................GAG..G......C..A......CC.A.C.A....A.G.U....G.AG..UGU...C..G.A..U..GAG..G.CUAC.U.G..C.G..A.A..C....UU..................................................................................GG.C.AG.A.A...C..U..GU..UG..AA.U.................................................................................................GC..C.GG...U...UU.U....G..GUGG....--...-..U.G..A..UA.AGA.A..GUA.A................................................................................UU.C.U....U.A..G.A....A..C..A...C..G...C......U.AG.CU-..-...-..-.-.-...--..-.-..--
   NC_007712.1       GCCG.CU.G.U.G.GCC.GGGAAA..CGCGAU..GAA...CUGC.GCG...GCCUGAAGGAAAACGUCAUCGUCGGACGGUUAAU.CCCGGC...CGGUAC.CG.GU.U...A...............................................................................CGC.UUA.U...CA......U.C.A.....GG..A..AC.G....C........G..CUC.G...C..CA.UC....G.U....CA..-G.C..aG.G...G..CG..AA.GC.G.C...C...G.....................................................................................................GCC..G......C..G......CC.G.C.A....G.A.U....U.AC..CGC...C..G.A..U..GAA..G.CUUC.C.G..C.C..A.A..C....CU..................................................................................GG.C.UG.A.A...C..U..GU..UG..AA.U.................................................................................................GC..G.GG...U...CU.G....G..GCGG....--...-..C.A..A..CG.ACG.A..CUG.A................................................................................UU.G.U....C.G..A.U...aC..C..G...U..U...C......C.UC.GC-..-...-..-.-.C...GC..U.G..GC
   NC_007908.1       GCGG.CC.A.U.C.AUG.GGUAAG..CGCGAC..GAA...UUGC.GCG...GCUUGAAAGAAAACGUCAUUGUGGGUCGACUGAU.UCCUGC...CGGUAC.CG.GC.A...U...............................................................................GGC.UUA.U...CA......C.G.A.....AG..C..CC.G....C........A..AGG.U...U..CG.CG....A.G....AA..CA.U...G.G...A..CG..AC.--.-.-...-...-ac................................................................................................ug.--A..G......C..G......CC.-.-.G....G.G.C....C.AU..UGC...C..G.A..G..GCA..G.AAGC.C.G..C.C..G.A..A....CU..................................................................................GG.C.GG.G.U...C..A..--..--..--.-ggcagaggcaacggaagccaaugaaggagcagcagccga..............guaagaucggauugcuauguuaaacauagcgccucaagcc....--..C.GU...U...--.-....-..----....--...-..-.-..-..--.---.-..---.-................................................................................--.-.-....-.-..-.-....-..-..-...-..-...-......-.--.---..-...-..-.-.-...--..-.-..--
   NC_008027.1       GCGG.CG.G.U.A.ACC.GGCAAG..CGCGAU..UAC...CUGC.GCG...GCCUGAAAGAGAACGUGGUUGUGGGUCGUCUGAU.CCCGGC...CGGUAC.UG.GU.C...U...............................................................................GGC.CUA.C...CA......C.A.G.....CG..A..GC.G....C........A..AGC.G...U..CG.CC....G.U....GA..UG.C...C.G...A..CA..AG.CC.G.C...U...G.....................................................................................................CGU..G......U..Ga....gCG.C.C.-....A.G.U....G.AG..-GU...G..G.A..A..GCC..G.CAC-.-.-..-.-..-.-..-....--ugaccgaagcgcugaacuccagcgguaacua...............agugcagggcagggccccggcaccccucgcaa....--.-.--.G.A...C..C..CU..CG..--.-.................................................................................................--..-.--...-...--.-....-..----....--...-..-.-..-..--.---.-..---.-................................................................................--.-.-....-.-..-.-....-..-..-...-..-...-......-.--.---..-...-..-.-.-...--..-.-..--
   NC_008260.1       GCGG.CG.G.U.A.ACC.GGCAAG..GAAGAC..GAC...UUGC.GUG...GCUUGAAAGAAAACGUUGUUGUGGGUCGUUUGAU.CCCCGC...CGGUAC.CG.GC.U...A...............................................................................UGC.CUA.U...CA......C.A.U.....GG..A..GC.G....U........C..GUC.G...U..CA.GC....G.U....GC..--.-...-.-...-..--..--.--.-.-...-...-ggaugcgcgcgggccagaagc.........................................................gccaaccauggacgagguagaa.---..-......-..-......--.-.-.-....G.C.U....GcGC..UGU...C..A.G..A..AGC..U.C-UU.A.G..C.U..C.C..U....CA..................................................................................GG.C.GA.G.U...A..A..GC..UG..AG.C.................................................................................................GU..U.UU...C...UU.G....A..CCGA....UA...A..U.G..G..CC.UCC.G..CCA.G................................................................................CA.G.U....G.G..C.G....G..U..G...G..C...U......A.U-.---..-...-..-.G.A...GC..C.C..CC
   NC_008700.1       GCGG.CU.G.U.U.GGC.GGUAAG..UCCGAC..AAC...CUGC.GCG...GUCUGAAAGAGAACGUUAUUGUGGGUCGUCUGAU.CCCUGC...CGGUAC.CG.GU.U...U...............................................................................UGC.UUA.C...CA......C.A.A.....GA..A..UC.GcgccA........A..GGC.G...C..--.--....G.U....GC..UU.C...U.G...G..UG..AA.GA.A.A...C...U.....................................................................................................GCG..G......C..U......CC.G.A.C....C.A.U....U.AC..UGC...C..A.G..C..GAA..G.CU--.-.-..-.-..-.-..-....--gagcagaaccu.......................................................ggcggaucugcu....--.-.--.-.-...-..-..--..--..--.-.................................................................................................--..G.AA...U...CU.G....G..CCGG....UA..gC..C.A..A..GA.GUA.A..GUU.A................................................................................CC.A.C....U.-..-.-....-..-..-...-..-...-......-.--.---..-...-..-.-.-...--..-.-..--
   NC_008709.1       GCUG.CU.G.U.U.GCC.GGCAAG..UGUGAU..CAA...UUAC.ACG...GCCUGAAAGAGAAUGUUAUCGUUGGUCGUCUGAU.UCCUGC...CGGUAC.UG.GU.U...U...............................................................................CGC.UCA.U...CA......U.A.-.....GA..-..--.G....C........A..AGG.G...C..CG.CU....G.C....GA..--.-...-.-...-..--..AA.GC.U.-...-...-.....................................................................................................GCU..G......-..-......--.-.-.A....A.C.U....G.GC..ACC...A..A.A..A..GUU..G.AA--.-.-..-.-..-.-..-....--gaaacaauuguagauacggguacagc.........................ugaacaaaacuuagcugacuugcuaaa....--.-.--.-.-...-..-..--..--..--.U.................................................................................................G-..-.--...-...CU.G....U..UGA-....--...-..U.U..U..UG.GUG.A..UUA.A................................................................................UC.A.C....U.A..A.U....U..U..C...A..U...C......G.UC.UAU..A...A..A.A.A...AG..G.U..GC
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   NZ_LR134327.1     GCGG.CA.G.U.A.GCA.GGUAAA..CGCGAU..GAA...UUAC.GCG...GCUUGAAAGAAAACGUCAUUGUGGGUCGUUUGAU.CCCGGC...GGGUAC.CG.GU.U...U...............................................................................UGC.GUA.U...CA......C.C.A.....AA..A..UC.G....U........C..---.-...-..--.--....-.-....--..--.-...-.-...-..--..--.--.-.-...-...-auaaaaauccaaccgugauuuccgaagaagaggugccgguaagauua.....ucggcagcggaugaagaagagauugcuuccgaauucgucaugacuucu.---..-......-..-......--.-.-.-....-.-.-....-.--..---...-..G.A..U..GAA..G.CAUC.G.G..C.A..A.A..U....UU..................................................................................GG.C.UG.A.A...A..U..GC..UG..AA.U.................................................................................................AU..G.GU...A...GA.A....G..ACGA....CG...A..U.C..A..CG.CAG.A..AUA.A................................................................................UU.U.A....U.U..-.C....U..C..G...U..C...A......C.--.---..U...U..A.A.A...AC..C.C..GG
   NZ_LR134376.1     GCGG.CC.G.U.U.GGC.GGCAAG..CGUGAC..GAA...CUGC.GUG...GCCUGAAAGAGAACGUGAUCGUGGGUCGUCUGAU.CCCGGC...UGGUAC.CG.GC.U...U...............................................................................UGC.CUA.C...CA......C.C.AugcccGG..A..UC.A....A........C.cAGC.G...UgcCG.CC....G.-....--..--.C...A.G...-..--..--.--.-.-...-...-cccgugcu...................................................................................gucggugua.---..-......-..-......CC.G.C.A....G.G.U....G.AC..UGC...C..G.A..U..GAG..G.C-UC.A.G..C.A..A.A.aC....CU..................................................................................GG.C.GG.A.U...C..U..GC..UC..AA.C.................................................................................................GC..A.GC...C...--.-....G..GCAG....CU...U..U.G..A..CG.AAG.A..GUA.A................................................................................UC.U.U....C.A..G.C....CguU..G...U..G...A......U.UA.AAG..-...-..A.G.G...GC..C.C..CU
   NZ_LR134485.1     GCCG.CU.G.U.U.GCA.GGUAAA..CGUGAU..GAA...CUGC.GCG...GUCUGAAAGAGAACGUAAUCGUGGGUCGUCUGAU.CCCGGC...UGGUAC.CG.GU.U...A...............................................................................CGC.GUA.C...CA......C.C.A.....GG..A..UC.G....U........A..UGC.G...C..CG.UC....G.C....GC..AG.C...G.G...G..CG..AA.CU.G.C...C...A.....................................................................................................GCU..G......C..A......CC.G.C.A....G.G.U....G.AC..UGC...U..G.A..A..GAU..G.CGUC.U.G..C.C..A.G..C....CU..................................................................................GG.C.AG.A.A...C..U..GC..UG..AA.C.................................................................................................GC..A.GG...U...CU.G....G..GCGG....UU...C..U.G..A..CA.ACG.A..UUA.A................................................................................UC.G.U....U.G..-.-....C..C..G...A..C...C......A.UA.AUA..-...A..A.A.A...AC..C.C..GC
   NZ_LR134494.1     GCGG.CU.G.U.U.GCC.GGUAAG..CGUGAU..GAA...CUGC.GUG...GCCUGAAAGAGAACGUCAUCGUGGGCCGUCUGAU.CCCAGC...CGGUAC.CG.GU.U...A...............................................................................CGC.UUA.U...CA......U.C.A.....GG..A..CC.G....C........A..UGC.-...-..-G.CC....G.U....AA..AG.CacaG.G...G..UG..AA.AC.G.C...C...A.....................................................................................................GUU..G......U..U......CC.G.C.A....G.G.U....G.AG..CGC...G..G.A..A..GAA..G.CAAC.G.G..C.U..A.A..C....CU..................................................................................GG.C.UG.A.A...C..U..GC..UC..AA.U.................................................................................................GC..A.GG...CaacCU.G....G..GUGG....CG...G..C.A..A..CA.ACG.A..UUA.A................................................................................UC.G.U....U.G..A.AugcgC..C..U...U..G...G......G.GU.UCG..G...C..A.-.-...--..-.-..--
   NZ_LR134510.1     GCAG.CG.G.U.U.GCG.GGUAAA..CGUGAU..GAA...UUAC.GCG...GUCUUAAAGAAAACGUUAUCGUGGGUCGUUUAAU.UCCAGC...AGGUAC.UG.GU.U...U...............................................................................UGC.GUA.U...CA......C.A.A.....AA..A..U-.A....A........A..CGU.-...-..--.--....-.-....--..--.-...-.-...-..--..--.--.-.-...-...-uuagaucgugaagcagugaaugcagaaaucgaugcagcuauc................auggaaaauccagugguagaagaagcugaaauuaucagcccu.---..-......-..-......--.-.-.-....-.-.-....-.--..-GC...G..G.A..U..GAA..G.CAAC.U.G..C.G..G.A..U....CU..................................................................................CG.C.AA.A.A...A..U..GC..UA..A-.-.................................................................................................AC..A.UG...G...CA.-....-..----....--...-..-.-..-..--.---.-..---.-gacuaau..............................................................cuagucu....--.-.-....-.-..-.-....-..-..-...-..A...A......A.UA.AAG..C...C..C.C.U...GC..C.C..GA
   NZ_LR134531.1     GCUG.CC.G.U.U.GCA.GGUAAA..CGUGAU..GAG...UUAC.GUG...GUCUGAAAGAGAACGUUAUCGUUGGUCGCCUGAU.UCCGGC...GGGUAC.CG.GU.U...A...............................................................................CGC.UUA.U...CA......C.C.A.....GG..C..UC.G....U........G..CAC.G...U..CG.UC....G.C....CA..CG.U...U.G...A..AG..AA.A-.-.-...-...-ucucca........................................................................................gugcua.-GU..G......C..U......CC.A.C.A....G.G.U....C.AG..CGC...A..G.A..A..GAA..G.CAAC.A.G..C.U..A.A..C....UU..................................................................................GG.C.UG.A.A...U..U..GC..UG..AA.U.................................................................................................GC..C.GG...U...CU.G....G..GUCA....CA...G..U.G..A..--.-CG.A..GUA.A................................................................................UC.A.A....C.G..C.Ua..cU..G..A...C..-...-......-.--.-UU..A...A..U.A.A...AC..C.G..CC
   NZ_LR699007.1     GCGG.CC.G.U.U.GCG.GGUAAA..CGCGAC..GAA...CUGC.GCG...GUCUGAAAGAGAACGUCAUUGUGGGUCGCCUGAU.CCCGGC...CGGUAC.CG.GU.U...U...............................................................................CGC.GUA.C...CA......C.C.A.....GG..A..UC.G....U........A..UCC.G...C..CG.CC....G.U....C-..--.-...-.-...-..--..--.--.-.-...-...-accuggcagaaacugcc.................................................................gaggcagcaccacagcag.---..-......-..-......--.-.-.-....G.U.C....A.GC..-GC...U..G.A..U..GAA..G.CAAC.A.G..C.U..A.A..C....UU..................................................................................AG.C.UG.A.G...C..U..UC..UG..AA.C.................................................................................................GC..C.GG...C...UU.C....G..----....--...-..-.-..-..--.---.-..---.-guggcagcaaagagua............................................agugauacagcaaugu....--.-.-....-.-..-.-....-..-..-...-..A...A......C.UG.ACU..G...A..A.C.A...GC..C.C..UC
   NZ_LR890047.1     GCCG.CC.G.U.U.GGA.GGCAAG..GAAGAU..GAA...UUGC.GUG...GUCUAAAAGAAAAUGUAAUUGUAGGGCGCCUGAU.ACCGGC...UGGAAC.UG.GU.U...A...............................................................................CGC.UUA.U...CA......UaC.A.....G-..C..UC.G....U........G..CAC.U...G..CG.UA....A.A....GC..UG.C...A.G...G..--..-A.GA.A.A...C...G.....................................................................................................UCU..G......C..A......CU.UcC.A....C.A.A....G.UA..AGC...GcuG.A..A..GAA..G.CAAC.U.G..C.U..A.A..U....CU..................................................................................AG.C.AG.A.A...U..U..GC..UA..AA.U.................................................................................................GC..A.AG...U...AU.A....A..ACAG....UG...A..U.G..A..AC.---.A..GUA.A................................................................................UA.C.A....G.U..U.U...gC..U..-...-..-...-......-.--.---..-...-..-.-.-...--..-.-..--
   NZ_LS398110.1     GCGG.CG.G.U.C.AAC.GGCAAG..AU---C..GAU...CCGC.UCGaagGCCUCAAGGAGAACGUCAUCGUCGGCCGGCUGAU.CCCGGC...GGGUAC.CG.G-.-...-...............................................................................CGC.CU-.C...CAu...ggC.C.A.....AG..A..UC.C....G........C..GAA.G...U..CG.CC....A.U....GA..AG.C...-.-...-..--..--.--.-.-...-...-gcgacaagcugaucc.....................................................................uggaugagcgcgagaa.---..-......-..-......--.G.C.A....G.G.C....G.GC..CGU...C..G.U..-..GUC..G.CCCG.C.G..C.C..G.G..-....--aagcgg.................................................................agccgau....GG.C.GC.U.G...C..C..GC..C-..--.U.................................................................................................GC..G.GA...A...UG.-....-..----....--...-..-.-..-..--.---.-..---.-augauucauccg....................................................uaggaauacugg....--.-.-....-.-..-.-....-..-..-...-..G...G......A.CA.AUG..A...A..A.A.G...GC..C.G..GC
   NZ_LS483422.1     GCUG.CA.G.U.A.GCA.GGUAAA..CGUGAU..GAA...CUGC.GCG...GUCUGAAAGAGAACGUUAUUGUUGGACGUCUGAU.CCCUGC...GGGUAC.UG.GU.U...U...............................................................................UGC.GUA.U...CA......U.C.A.....GG..A..AC.G....U........A..UCC.G...U..CG.UC....G.U....CA..UC.U...G.A...A..UG..AU.GU.A.G...U...G.....................................................................................................GAA..G......C..G......CC.A.C.A....A.G.U....C.AG..CGC...A..G.A..U..GAA..G.CAAC.A.G..C.G..A.A..C....UU..................................................................................GG.C.UG.A.A...C..U..GU..UA..AA.U.................................................................................................GC..A.GG...C...UU.U....U..CUAG....CA...A..G.U..A..GA.ACG.C..AUA.C................................................................................UG.A.U....U.U..A.G....C..U..-...-..-...-......-.--.---..-...-..-.-.-...--..-.-..--
   NZ_LS483443.1     GCAG.CA.G.U.A.GCA.GGUAAA..CGCGAU..GAA...UUAC.GCG...GCUUGAAAGAAAACGUCAUCGUGGGUCGUCUGAU.CCCGGC...UGGUAC.CG.GU.U...U...............................................................................UGC.GUA.U...CA......C.C.A.....AA..A..UC.G....U........C..---.-...-..--.--....-.-....--..--.-...-.-...-..--..--.--.-.-...-...-acaaaaacccggcaguuaucgcugaugaagaggugccgguaagauua.....ucggcugcggaugaagaagaaauugcuucugaauucguuaugaccucu.---..-......-..-......--.-.-.-....-.-.-....-.--..---...-..G.A..A..GAU..G.CUUC.C.G..C.C..A.G..C....UU..................................................................................AA.C.UG.A.A...A..U..GU..UA..A-.-.................................................................................................AC..A.UG...G...UA.G....A..----....--...-..-.-..-..--.---.-..---.-agaugacgagcac..................................................gcggaauaauauu....--.-.-....-.-..-.-....-..-..-...-..C...C......C.UC.GUA..U...A..A.A.A...AC..C.C..GA
   NZ_LS483470.1     GCGG.CC.G.U.U.GCU.GGCAAG..CGCGAC..GAA...CUGC.GCG...GCUUGAAAGAGAACGUCAUCGUGGGUCGUCUGAU.UCCGGC...AGGUAC.CG.GC.U...A...............................................................................UGC.CUA.C...CA......C.C.A.....GG..A..UC.G....C........A..UGC.G...C..CG.UC....G.C....CA..UA.U...A.G...A..AG..AU.AU.C.G...C...U.....................................................................................................UCA..G......C..A......CC.G.C.A....G.G.U....A.AG..UGC...A..G.A..A..GAG..G.CAUC.A.G..C.U..A.A..U....CU..................................................................................GG.C.GG.A.A...C..U..GC..UA..AA.C.................................................................................................GC..C.GG...U...CU.G....G..GCAA....UA...G..C.G..A..CG.ACG.A..AUA.A................................................................................UC.G.A....C.G..C.A....-..-..G...C..C...U......C.UA.GGC..G...A..A.C.G...UU..C.U..--
   NZ_LS999205.1     GCGG.CG.G.U.A.ACU.GGCAAG..CGCGAC..UAC...CUGC.GUG...GUCUGAAAGAAAACGUGGUCGUGGGUCGUCUGAU.CCCGGC...CGGUAC.UG.GC.C...U...............................................................................GGC.GUA.C...CA......C.A.G.....CG..A..GC.G....U........A..AGC.G...U..CG.UC....G.U....GA..UG.C...A.G...A..--..--.--.-.-...-...-caagccgcugcgcguaagcgcaagcgaagucgaagcag........................cacugacugaagcgcugaacuccagcgguaauugaggu.---..-......-..-......CU.G.C.A....G.U.A....G.AU..UG-...-..-.-..A..GAC..G.GGGC.C.-..-.-..-.-..-....--c............................................................................c....--.-.GG.C.U...U..U..UU..CG..AU.U.................................................................................................GA..G.AA...U...CA.A....G..ACAC....U-...-..-.-..-..--.---.-..---.-................................................................................--.-.-....-.-..-.-....-..-..-...-..-...-......-.--.---..-...-..-.-.-...--..-.-..--
   NZ_LT615367.1     GCCG.CG.G.U.U.GCC.GGUAAA..CGUGAU..GAA...CUGC.GUG...GCCUGAAAGAGAACGUCAUCGUCGGUCGUCUGAU.CCCGGC...CGGUAC.GG.GC.U...A...............................................................................UGC.GUA.U...CA......U.C.A.....GG..A..UC.G....C........A..UGC.G...U..CG.CC....G.U....CA..GG.C...A.G...G..CG..AA.GU.U.C...A...G.....................................................................................................CCG..A......C..A......CC.G.C.A....G.G.U....G.AG..UGC...U..G.A..A..GAA..G.CCUC.C.G..C.C..A.A..C....CU..................................................................................GG.C.AG.A.A...C..U..GU..UG..AA.U.................................................................................................GC..C.GG...U...CU.G....G..GUGG....UA...G..C.G..A..CG.ACG.A..GUA.A................................................................................UC.G.U...uC.G..U.C....U..C..A...U..G...U......C.UG.CUA..C...A..G.G.C...A-..-.-..--
   NZ_LT855380.1     GCAG.CU.G.U.G.ACU.GGCAAG..CGCGAC..UAC...CUGC.GCG...GCCUGAAGGAGAACGUGGUCGUGGGUCGUCUGAU.CCCGGC...CGGUAC.CG.GU.C...U...............................................................................GGC.UUA.U...CA......C.A.G.....CG..A..GC.G....C........A..AGC.G...U..CG.CC....G.U....GA..AA.U...G.G...A..CA..AA.C-.-.-...-...-cg................................................................................................au.-GC..G......U..G......UC.A.G.U....-.G.C....G.AG..CGA...G..G.U..A..GAA..G.CCGC.U.-..-.C..U.G..A....CU..................................................................................GA.-.AG.C.-...-..-..GU..UG..AA.-cu........................................................................................cca....--..-.--...-...--.-....-..GCGG....UA...-..-.A..C..UG.AGA.C..UAA.A................................................................................GC.C.U....C.G..-.-....-..-..-...-..-...-......-.--.---..-...-..-.-.-...--..-.-..--
   NZ_LT897836.1     GCCG.CC.G.U.U.GCC.GGUAAA..CGAGAU..GAA...CUAC.GCG...GCUUGAAAGAAAACGUGAUUGUUGGACGAUUAAU.UCCCGC...UGGUAC.UG.GU.U...A...............................................................................UGC.UUA.U...CA......U.C.A.....AA..A..AC.G....C........U..UAC.G...U..CA.UC....G.U....CA..GC.A...U.G...A..UG..GG.GA.A.C...U...A.....................................................................................................GCC..A......C..A......CC.A.C.A....G.A.U....U.AC..CGC...C..G.A..U..GAA..G.CUUC.C.G..C.A..A.A..U....UU..................................................................................GG.C.UG.A.U...C..U..GC..UG..AA.C.................................................................................................GC..A.GG...U...UU.G....G..GUGC....UA...A..U.A..A..CG.A--.-..---.-uugauuaucg........................................................guacuugcuu....--.-.U....C.G..C.U....G..CuaU...C..U...A......A.UA.---..-...-..-.-.-...--..-.-..--
   NZ_LT906435.1     GCCG.CC.A.U.C.AUG.GGCAAG..AAGGAC..GAC...CUGC.GUG...GCCUGAAGGAAAACGUCAUCGUUGGCCGUCUGAU.CCCGGC...AGGUAC.GG.GU.C...U...............................................................................GGC.GUA.U...CA......C.A.A.....GG..C..CC.G....C........A..AGG.C...C..CG.CG....A.A....UC..GU.C...G.G...A..UC..GC.GA.-.-...-...-g.................................................................................................cg.UCA..C......G..A......CCaG.A.U....C.G.C....-.--..UCU...G..G.A..A..GAG..G.CGUU.U.G..C.C..-.-..-....--ccgaucc................................................................ccacuuc....GG.U.GG.A.A...G..A..GC..CG..AC.G.................................................................................................--..-.--...-...--.-....-..----....--...-..-.-..-..--.---.-..---.-................................................................................--.-.-....-.-..-.-....-..-..-...-..-...-......-.--.---..-...-..-.-.-...--..-.-..--
   NZ_LT906479.1     GCUG.CC.G.U.A.GCC.GGCAAG..CGCGAU..GAA...CUGC.GUG...GCCUGAAAGAGAACGUCAUCGUGGGCCGUCUGAU.CCCAGC...CGGUAC.CG.GU.U...A...............................................................................CGC.UUA.U...CA......U.C.A.....GG..A..CC.G....C........A..UGC.G...C..CG.UC....G.U....GC..AC.A...G.G...G..CG..AA.GC.G.C...C...G.....................................................................................................GUU..G......U..U......CC.G.C.A....G.G.U....G.AG..CGC...G..G.A..A..GAA..G.CGAC.A.G..C.C..A.A..C....CU..................................................................................GG.C.CG.A.A...C..U..GC..UC..AA.U.................................................................................................GC..A.GG...CaacCU.G....G..GCGG....CA...G..C.G..A..CG.ACG.A..GUA.A................................................................................UC.G.U....U.G..A.AcgcgC..C..G...C..G...G......G.UC.CGG..C...-..-.U.U...GC..C.-..--
   NZ_LT907988.1     GCCG.CC.A.U.C.AUG.GGCAAG..CGCGAC..GAC...CUGC.GUG...GCCUGAAGGAAAACGUCAUCGUCGGCCGUCUGAU.CCCGGC...AGGUAC.CG.GU.-...-auguccuaccacggugcccgcaagg..........................acaaggaagcgcuggaagucgccgaa..CGC.GAAgC...CG......C.C.C.....GC..G..CC.C....A........A..GCC.A...A..CC.CC....U.U....CG..--.-...-.-...A..GG..AC.AC.G.C...C...G.....................................................................................................GUG..G......C..C......GU.-.-.-....G.G.G....-.--..UGG...C..G.A..G..GAC..G.ACGC.G.G..C.C..G.A..A....CC..................................................................................GG.A.UG.C.A...C..C..GG..UG..--.-.................................................................................................UC..G.AA...C...GA.A....G..GCGG....CA...G..C.G..A..CG.CCG.A..GUA.A................................................................................GC.G.U....C.A..C.U....G..U..C...C..U...U......U.CA.CCA..G...G..C.C.A...GC..C.-..--
   NZ_OU594967.1     GCGG.CC.G.U.C.AGC.GGCAAA..CAGGAC..GAA...UUAC.GCG...GCCUGAAAGAAAACGUUAUUGUAGGUCGACUGAU.UCCUGC...CGGUAC.UG.GC.U...U...............................................................................UGC.UUA.U...CA......C.C.A.....GC..A..AC.G....U........C..GUA.G...C..CG.UA....A.U....G-..--.-...-.-...-..--..--.--.-.-...-...-aaccagca....................................................................................ccacagau.---..-......-..-......--.-.-.-....U.A.C....U.GC..UGA...U..G.A..A..GCA..G.AA--.-.-..-.C..-.-..-....--aga.......................................................................aucu....GG.C.AG.A.U...U..U..GC..UU..AA.C.................................................................................................GC..A.GC...U...GA.U....C..AC--....GG...C..G.A..A..UA.AAG.C..GCA.A................................................................................UC.U.U....U.A..C.U....G..-..G...U..U...U......U.AA.GUG..C...U..U.A.A...GG..C.G..GC


   Structure         ((((..(.(.(.(.(((.........))))))..).....)))).(((.....((.....))..)))....((((((((((((((.((.((.....(((((.((........................................................................................))..))).)...).......).).......))..)..)).)................(((.(...(..((.((...............((.(...(.(......((...(.((.................................................................................................................))).........)..)......)).).).)....).).)....).))...))...)..........)))..)...((.(.(..(.(................................................................................................)).).)).).....(..(..((...........................................................................................................))..).)...................((((....................((.(((.(.......................................................................................)).).)....).).........)..)..)...)......................................))..).)..))


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thrU-tyrU-glyT-thrT-tufB-secE-rplK-rplA-rplJ-rplL-rpoB-rpoC-nusG



Position: 13988-14202, Conformation: #0







97% 90% 75% 50% Nucleotide present N N N Nucleotide identify E < 0.1 Base-pair covariation E < 0.05 Helix-level covariation 97% 90% 75%

G C G C R U R Y G G Y A A R R Y G A Y R A C U R C G Y G G Y C U G A A R G A R A A C G U A U Y G U G G Y C G Y Y U G A U Y C C G C G G U A C G G Y Y G C U A Y C A Y R R R R C G Y G G R G Y R 5'