thrU-tyrU-glyT-thrT-tufB-secE-rplK-rplA-rplJ-rplL-rpoB-rpoC-nusG



Position: 12938-13037, Conformation: #0







DMS reactivity > 1.0 0.0 0.4 0.7 G/U/No data
Position: 0 (position.label in template: 0.5')5' Position: 1 (position.label in template: 1.U) Reactivity: nanU Position: 2 (position.label in template: 2.G) Reactivity: nanG Position: 3 (position.label in template: 3.A) Reactivity: nanA Position: 4 (position.label in template: 4.U) Reactivity: nanU Position: 5 (position.label in template: 5.C) Reactivity: nanC Position: 6 (position.label in template: 6.G) Reactivity: nanG Position: 7 (position.label in template: 7.A) Reactivity: nanA Position: 8 (position.label in template: 8.C) Reactivity: nanC Position: 9 (position.label in template: 9.G) Reactivity: nanG Position: 10 (position.label in template: 10.A) Reactivity: nanA Position: 11 (position.label in template: 11.A) Reactivity: nanA Position: 12 (position.label in template: 12.U) Reactivity: nanU Position: 13 (position.label in template: 13.U) Reactivity: nanU Position: 14 (position.label in template: 14.C) Reactivity: nanC Position: 15 (position.label in template: 15.G) Reactivity: nanG Position: 16 (position.label in template: 16.G) Reactivity: nanG Position: 17 (position.label in template: 17.U) Reactivity: nanU Position: 18 (position.label in template: 18.C) Reactivity: nanC Position: 19 (position.label in template: 19.G) Reactivity: nanG Position: 20 (position.label in template: 20.U) Reactivity: nanU Position: 21 (position.label in template: 21.A) Reactivity: nanA Position: 22 (position.label in template: 22.C) Reactivity: nanC Position: 23 (position.label in template: 23.U) Reactivity: nanU Position: 24 (position.label in template: 24.A) Reactivity: nanA Position: 25 (position.label in template: 25.A) Reactivity: nanA Position: 26 (position.label in template: 26.A) Reactivity: nanA Position: 27 (position.label in template: 27.G) Reactivity: nanG Position: 28 (position.label in template: 28.A) Reactivity: nanA Position: 29 (position.label in template: 29.A) Reactivity: nanA Position: 30 (position.label in template: 30.A) Reactivity: nanA Position: 31 (position.label in template: 31.G) Reactivity: nanG Position: 32 (position.label in template: 32.C) Reactivity: 0C Position: 33 (position.label in template: 33.U) Reactivity: nanU Position: 34 (position.label in template: 34.A) Reactivity: 0.5A Position: 35 (position.label in template: 35.C) Reactivity: 0C Position: 36 (position.label in template: 36.A) Reactivity: 0A Position: 37 (position.label in template: 37.A) Reactivity: 0.5A Position: 38 (position.label in template: 38.A) Reactivity: 0A Position: 39 (position.label in template: 39.G) Reactivity: nanG Position: 40 (position.label in template: 40.U) Reactivity: nanU Position: 41 (position.label in template: 41.A) Reactivity: 1A Position: 42 (position.label in template: 42.C) Reactivity: 0C Position: 43 (position.label in template: 43.C) Reactivity: 0C Position: 44 (position.label in template: 44.U) Reactivity: nanU Position: 45 (position.label in template: 45.U) Reactivity: nanU Position: 46 (position.label in template: 46.A) Reactivity: 0.5A Position: 47 (position.label in template: 47.C) Reactivity: 0C Position: 48 (position.label in template: 48.G) Reactivity: nanG Position: 49 (position.label in template: 49.G) Reactivity: nanG Position: 50 (position.label in template: 50.U) Reactivity: nanU Position: 51 (position.label in template: 51.G) Reactivity: nanG Position: 52 (position.label in template: 52.C) Reactivity: 0C Position: 53 (position.label in template: 53.G) Reactivity: nanG Position: 54 (position.label in template: 54.G) Reactivity: nanG Position: 55 (position.label in template: 55.U) Reactivity: nanU Position: 56 (position.label in template: 56.A) Reactivity: 0A Position: 57 (position.label in template: 57.C) Reactivity: 0C Position: 58 (position.label in template: 58.U) Reactivity: nanU Position: 59 (position.label in template: 59.G) Reactivity: nanG Position: 60 (position.label in template: 60.G) Reactivity: nanG Position: 61 (position.label in template: 61.C) Reactivity: 0C Position: 62 (position.label in template: 62.G) Reactivity: nanG Position: 63 (position.label in template: 63.A) Reactivity: 0A Position: 64 (position.label in template: 64.A) Reactivity: 0A Position: 65 (position.label in template: 65.A) Reactivity: 1A Position: 66 (position.label in template: 66.G) Reactivity: nanG Position: 67 (position.label in template: 67.G) Reactivity: nanG Position: 68 (position.label in template: 68.C) Reactivity: 0C Position: 69 (position.label in template: 69.G) Reactivity: nanG Position: 70 (position.label in template: 70.A) Reactivity: 0A Position: 71 (position.label in template: 71.U) Reactivity: nanU Position: 72 (position.label in template: 72.G) Reactivity: nanG Position: 73 (position.label in template: 73.G) Reactivity: nanG Position: 74 (position.label in template: 74.C) Reactivity: 0C Position: 75 (position.label in template: 75.G) Reactivity: nanG Position: 76 (position.label in template: 76.A) Reactivity: 1A Position: 77 (position.label in template: 77.A) Reactivity: 0.5A Position: 78 (position.label in template: 78.C) Reactivity: 0C Position: 79 (position.label in template: 79.A) Reactivity: 0A Position: 80 (position.label in template: 80.G) Reactivity: nanG Position: 81 (position.label in template: 81.G) Reactivity: nanG Position: 82 (position.label in template: 82.U) Reactivity: nanU Position: 83 (position.label in template: 83.U) Reactivity: nanU Position: 84 (position.label in template: 84.G) Reactivity: nanG Position: 85 (position.label in template: 85.C) Reactivity: 0C Position: 86 (position.label in template: 86.U) Reactivity: nanU Position: 87 (position.label in template: 87.G) Reactivity: nanG Position: 88 (position.label in template: 88.G) Reactivity: nanG Position: 89 (position.label in template: 89.C) Reactivity: 0C Position: 90 (position.label in template: 90.G) Reactivity: nanG Position: 91 (position.label in template: 91.G) Reactivity: nanG Position: 92 (position.label in template: 92.C) Reactivity: 0.5C Position: 93 (position.label in template: 93.G) Reactivity: nanG Position: 94 (position.label in template: 94.A) Reactivity: 0A Position: 95 (position.label in template: 95.A) Reactivity: 0.5A Position: 96 (position.label in template: 96.A) Reactivity: 1A Position: 97 (position.label in template: 97.C) Reactivity: 0C Position: 98 (position.label in template: 98.C) Reactivity: 0C Position: 99 (position.label in template: 99.G) Reactivity: nanG Position: 100 (position.label in template: 100.U) Reactivity: nanU Position: 101 (position.label in template: 101.U) Reactivity: nanU Position: 102 (position.label in template: 102.G) Reactivity: nanG Position: 103 (position.label in template: 103.C) Reactivity: 0C Position: 104 (position.label in template: 104.A) Reactivity: 0A Position: 105 (position.label in template: 105.A) Reactivity: 0A Position: 106 (position.label in template: 106.A) Reactivity: 0A Position: 107 (position.label in template: 107.C) Reactivity: 0C Position: 108 (position.label in template: 108.U) Reactivity: nanU Position: 109 (position.label in template: 109.G) Reactivity: nanG Position: 110 (position.label in template: 110.G) Reactivity: nanG Position: 111 (position.label in template: 111.G) Reactivity: nanG Position: 112 (position.label in template: 112.A) Reactivity: nanA Position: 113 (position.label in template: 113.C) Reactivity: nanC Position: 114 (position.label in template: 114.C) Reactivity: nanC Position: 115 (position.label in template: 115.C) Reactivity: nanC Position: 116 (position.label in template: 116.G) Reactivity: nanG Position: 117 (position.label in template: 117.C) Reactivity: nanC Position: 118 (position.label in template: 118.A) Reactivity: nanA Position: 119 (position.label in template: 119.C) Reactivity: nanC Position: 120 (position.label in template: 120.A) Reactivity: nanA Position: 121 (position.label in template: 121.C) Reactivity: nanC Position: 122 (position.label in template: 122.C) Reactivity: nanC Position: 123 (position.label in template: 123.A) Reactivity: nanA Position: 124 (position.label in template: 124.U) Reactivity: nanU Position: 125 (position.label in template: 125.G) Reactivity: nanG Position: 126 (position.label in template: 126.C) Reactivity: nanC Position: 127 (position.label in template: 127.C) Reactivity: nanC Position: 128 (position.label in template: 128.G) Reactivity: nanG Position: 129 (position.label in template: 129.G) Reactivity: nanG Position: 130 (position.label in template: 130.U) Reactivity: nanU Position: 131 (position.label in template: 131.U) Reactivity: nanU Position: 132 (position.label in template: 132.A) Reactivity: nanA Position: 133 (position.label in template: 133.U) Reactivity: nanU Position: 134 (position.label in template: 134.C) Reactivity: nanC Position: 135 (position.label in template: 135.A) Reactivity: nanA Position: 136 (position.label in template: 136.C) Reactivity: nanC Position: 137 (position.label in template: 137.C) Reactivity: nanC Position: 138 (position.label in template: 138.G) Reactivity: nanG Position: 139 (position.label in template: 139.A) Reactivity: nanA Position: 140 (position.label in template: 140.A) Reactivity: nanA Position: 141 (position.label in template: 141.3')3' 10 20 30 50 100


thrU-tyrU-glyT-thrT-tufB-secE-rplK-rplA-rplJ-rplL-rpoB-rpoC-nusG



Position: 12938-13037, Conformation: #0







Retained alignments:


   NC_002977.6       GAUCG...A...CG...AAC...................ACGGCCGUGA...GCGU...GAGCGCUACAA......................................GAUCC..C.CUACGGA.G...C...G...G......U...U...C.U...G...--..-...-......U..C.....GG.U...G....C....G..GG.A...G...G...G.C.G...G...C.....G...C...G.G...U...C.A...A...G...G...C....-..---aggc......................caga..UCG.UG..GU.GA.A..CU.G.GGA..UC.CGCAUAC...CC...AUCCGGU.C.AU..CUCCG
   NC_003910.7       --UUG...A...UG...AAA...................UGGGCCGUGA...GAAA...GAACGUUAUAA......................................AGUUC..C.UUACGGU.U...C...U...G......U...A...C.U...U...UC..U...A......A..G.....AA.U...G....A....U..GG.C...G...A...AgC.A...G...U.....G...A...A.C...U...-.C...U...G...G...C....G..AUA................................CUA.UC..GC.UA.A..CU.G.GGA..CC.CACAUAC...GC...AUCCUAU.C.AU..CACGG
   NC_004347.2       CAUCG...A...CG...AGU...................UAGGUCGUGA...GAAA...GAGCGUUAUAA......................................AGUGC..C.UUACGGG.A...C...U...G......U...G...C.U...C...GA..G...A......A..G.....UU.A...G....A....A..GA.A...G..cA...U.C.A...Gu.aG.....A...A...G.C...G...G.G...-...-...-...C....G..AUA................................UUA.UC..GC.UA.A..CU.G.GGA..UC.CACAUAC...UC...ACCCAAU.C.AU..UACUG
   NC_004603.1       CAUCG...A...UG...AGU...................UCGGCCGUAC...GAAA...GAGAAACACAA......................................ACUGC..C.AUACGGC.U...C...G...C......U...A...C.U...A..aGC..A...-......A..G.....GG.C...G....A....C..AA.C...G...A..cG.C.A...G...-.....U...U...G.A...A...-.G...C...U...G..gU....G..AAA................................CAG.UA..GC.GA.A..CU.G.GGA..AG.CGCACAC...AC...UGCCAAU.C.AU..CACUG
   NC_005126.1       GAUCG...A...CG...AAU...................UUGGCCGUAC...UAAA...GAAAGCUAUAA......................................AGUGC..C.UUACGGU.G...C...A...G......U...A...C.U...G...GG..U...A......A..A.....GG.U...G....A....U..GG.C...G...A..aA.C.C...G...U.....U...A...A.C...-...G.G...C...G...G...U....G..AAA................................CCG.UU..GC.UA.A..CU.G.GGA..UC.CGCACAC...CA...UGCCAGU.G.GU..CAGUG
   NC_006300.1       UAUUG...A...UG...CUU...................UCGGUCGUAC...UAAA...GAGCAUUAUAA......................................AGUGC..C.UUACGGU.G...C...G...G......U...A...U.U...G...AA..C...A......A..A.....GG.C...G....A....C..GG.C...G...A...A.G.C...G...G.....U...A...A.C...A...-.G...C...G...G..gC....G..AAA................................CGG.UA..GC.AA.A..CU.G.GGA..UC.CGCAUAC...AA...UGCCGGU.U.GU..CUCUG
   NC_006512.1       GACUG...A...UG...AAU...................ACGGUCGUGA...GCGC...GAGCGUUACAA......................................AGUAC..C.UUAUGGU.G...C...G...G......U...C...U.U...G...AA..A...A......A..A.....GG.U...G....A....A..GG.C...G...A...CuC.A...G...-.....U...A...G.A...U...G.G...C...G...G...C....G..AAA................................CCG.UU..GC.UA.A..CU.G.GGA..CC.CGCACAC...UC...ACCCAAU.C.AU..UACCG
   NC_007204.1       GACCG...A...UG...AAC...................UUGGUCGUGA...GCGU...GAGCGUUAUAA......................................AGUAC..C.UUAUGGU.U...C...A...A......G...C...G.U...C...CU..C...A......U..A.....AA.A...G....A....C..GA.A...G...A...G.C.A...G...G.....U...U...G.A...A...G.G...C...G...G...U....C..AAA................................CCA.UC..GC.UA.A..GU.G.GGA..UC.CACACAC...GC...---AUCC.U.AU..UAUCA
   NC_007292.1       --UUG...A...UC...AAU...................UUUCUCGUAC...CAAA...GAAAGCUAUAA......................................AGUAC..C.GUAUGGA.G...C...U...G......U...A...A.U...A...AC..U...A......A..A.....AA.A...A....A....U..GA.A...G...A...A.A.A...A...G.....U...C...A.U...A...C.A...U...G...G...A....G..AAA................................UAG.UA..GC.UU.A..UU.G.GGA..UC.CACAUAC...UA...UGCCAGU.G.AU..UGCUG
   NC_007645.1       --CAG...A...CG...AAG...................CUGGUCGGGA...AAGG...GAGUGGUAUAA......................................GCUUC..C.AUACGGU.G...U...U...G......A...G...C.U...G...AG..U...G......U..U.....AA.G...C....A....A..GG.U...C...A...A.C.A...G...G.....U...U...G.C...C...G.C...A...G...G...U....G..AGA................................UCG.UC..GC.CA.A..AU.G.GGA..CC.CACAUAC...GC...ACCCGAU.U.AU..CACAG
   NC_007712.1       GGUUG...A...CG...AAU...................UCGGCCGUAC...CAAA...GAAAGCUAUAA......................................GGUGC..C.UUAUGGC.G...C...U...G......U...G...A.U...G...GC..C...A......A..A.....GG.C...G....A....C..GG.C...G...C...G.G.A...G...A.....U...C...A.U...G...G.G...C...G...G...C....G..AAA................................CCG.UU..GC.CA.A..CU.G.GGA..UC.CGCAUAC...CA...UGCCGGU.U.AU..CACCG
   NC_007951.1       CACCG...A...CG...ACC...................ACGGUCGCGA...GCGC...GAACGUCACAA......................................GGUGC..C.GUACGGC.G...C...G...A......C...G...C.U...G...UU..G...C......A..A.....CU.G...G....A....C..GG.C...G...C...G.C.A...G...A.....U...C...A.A...G...G.C...C...G...Gc.aC....G..CAA................................CUG.GC..--.CA.C..GU.G.GGA..CC.CGAUGAC...GC...GUCCGAU.C.AU..CACCG
   NC_007954.1       UAUCG...A...UG...AGC...................UAGGUCGUGA...GAAA...GAGCGUUACAA......................................GGUGC..C.UUACGGU.A...C...U...G......U...G...C.U...U...GA..G...A......A..A.....UU.G...G....A....A..GA.C...A...G...U.G.A...A...G.....U...U...A.C...A...G.C...A...G...G...C....G..AAA................................UCA.UC..GC.UA.A..CU.G.GGA..UC.CACAUAC..uCA...CCC-AAU.U.AU..CUCUG
   NC_007963.1       GGCCG...U...CG...---ccga........cgagc..AUGGUCGCGA...GCGC...GAGUACUACAA......................................GCUGC..C.GUACGGU.G...C...C...G......A...G...C.U...G...--..U...C......G..G.....UG.C...G....-....U..GA.C...G...G...U.G.A...C...A.....U...G...G.U...C...G.Aa.gC...G...G...G....A..ACG................................CCGgUC..GC.CA.A..GU.G.GGA..UC.CGCACAC...UC...AUCCGGU.C.GU..CGCCG
   NC_008027.1       UGCCG...A...CG...AAU...................UCGGCCGUGA...GCGU...GAGCGCUACAA......................................GCUGC..C.UUACGGU.G...C...G...G......Ug.aU...U.U...C...GG..U...C......A..A.....G-.-...G....A....A..GG.U...G...A...G.A.A...G...G.....U...C...G.A...A...G.C...U...G...G...C....G..CCA................................UCG.UC..GC.CA.A..GU.G.GGA..CC.CGCACAC...CC...ACCCGAU.C.GU..UACCG
   NC_008345.1       CAUCG...A...UG...AGC...................UAGGUCGUGA...GAAA...GAGCGUUAUAA......................................AGUGC..C.UUACGGU.A...C...A...G......U...A...U.U...A...GA..G...A......A..A.....UU.G...G....A....A..GA.C...A...G...U.G.A...A...G.....U...U...G.C...A...G.C...U...G...G...C....G..AAA................................UCA.UC..GC.UA.A..CU.G.GGA..UC.CACAUAC...UC...ACCCAAU.U.AU..UUCUG
   NC_008700.1       CAUCG...A...UG...AGC...................UGGGUCGUGA...GAAA...GAGCGCUACAA......................................GGUGC..C.UUACGGU.A...C...C...G......U...G...C.U...U...GA..C...A......C..C.....AA.A...G....A....A..GG.U...G...C...C.G.A...G...G.....U...G...A.A...U...G.C...U...G...G...C....C..AGA................................UCA.UU..GC.GA.A..CU.G.GGA..UC.CGCACAC...UC...ACCCAAU.C.AU..CACUG
   NC_008709.1       UAUUG...A...UA...AAU...................UAGGCCGUAC...UAAA...GAAAACCAUAG......................................ACUGC..C.UUACGGU.G...C...C...G......U...U...C.U...U...GA..G...A......A..A.....CA.A...G....A....U..GG.U...G...C...U.G.A...A...A.....U...C...A.C...C...U.C...U...G...G...U....G..AAA................................UCA.UC..GC.UA.A..CU.G.GGA..CC.CGCAUAC...AC...AUCCAAU.U.AU..UACGG
   NC_009092.1       UAUCG...A...UG...AGC...................UGGGUCGUGA...GAAA...GAGCGUUACAA......................................GGUGC..C.UUACGGU.A...C...U...G......U...C...C.U...A...GA..G...A......A..G.....CU.G...G....A....A..GA.C...G..cA...A.C.G...G...U.....Ua.aU...G.C...C...G.G...U...G...A...A....G..---................................UCA.UC..GC.UA.A..CA.G.GGA..UC.CGCACAC...UC...ACCCAAU.C.GU..UUCUG
   NC_009792.1       GAUCG...A...CG...AAU...................UCGGUCGUAC...CAAA...GAGAGCUAUAA......................................AGUGC..C.UUACGGU.U...C...U...G......U...U...A.U...G...GC..G...A......A..A.....GG.U...G....A....U..GG.C...G...A...G.C.A...G...G.....U...U...G.C...C...G.G...C...G...G...C....G..AAA................................CCG.UU..GC.AA.A..CU.G.GGA..CC.CGCACAC...CA...UGCCGGU.U.AU..CACCG
   NC_009831.1       UAUUG...A...CG...AAC...................UUGGUCGUGA...GAAA...GAGCGUUACAA......................................GGUGC..C.AUACGGU.A...C...U...A......U...U...C.U...G...GA..A...A......A..G.....CU.U...G....A....A..GA.A...G...C...G.U.C...U...G.....U...A...G.C...G...G.C...U...G...G...C....G..AAA................................UCA.UC..GC.UA.A..CU.G.GGA..UC.CACAUAC...UC...ACCCAAU.U.AU..UUCUG
   NC_009901.1       CAUUG...A...UG...AGC...................UAGGUCGUGA...GAAA...GAGCGUUAUAA......................................GGUUC..C.UUACGGU.A...C...U...G......U...C...C.U...A...GA..G...A......A..A.....UU.G...G....A....A..GA.U...G...A...C.G.G...U...G.....U...A...U.C...U...G.C...U...G...G...C....G..AAA................................UUA.UC..GC.UA.A..GU.G.GGA..UC.CGCAUAC...UC...ACCCAAU.U.AU..UUCUG
   NC_010334.1       UAUUG...A...UG...AGC...................UAGGUCGUGA...GAAA...GAGCGUUAUAA......................................GGUUC..C.UUACGGU.A...C...U...G......U...A...C.U...U...GA..G...A......A..G.....UU.G...G....A....A..GA.U...G...A...C.G.G...C...G.....U...A...G.C...U...G.C...U...G...G...C....G..AGA................................UUA.UC..GC.UA.A..GU.G.GGA..UC.CGCAUAC..uCA...CCC-AAU.U.AU..CACAG
   NC_010506.1       UAUCG...A...UG...AGC...................UUGGUCGUGA...GAAA...GAGCGUUAUAA......................................GGUUC..C.UUACGGU.A...C...U...G......U...A...C.U...U...GA..G...A......A..G.....UU.G...G....A....A..GA.U...G...A...UgC.U...G...-.....U...U...G.C...A...G.C...U...G...G...C....G..AAA................................UUA.UC..GC.UA.A..CU.G.GGA..UC.CGCAUAC...UC...ACCCAAU.C.GU..UUCUG
   NC_010519.1       UAUUG...A...UA...CAU...................UCGGAAGAAC...AAAA...GAGCAUUAUAA......................................AGUAC..C.UUAUGGU.G...C...G...G......U...A...U.-...-...-U..A...A......A..U.....CA.U...G....C....U..GA.U...G...G...U.G.A...A...G.....A...A...G.U...-...U.A...C...G...G...CagguG..AAA................................CCG.UG..GC.UA.A..UU.G.GGA..UC.CUCAUAC...AA...UGCCUGU.U.AU..UUCUG
   NC_010554.1       GAUUG...A...CG...AAU...................UCGGUCGUAC...GAAA...GAAAGCUAUAA......................................AGUAC..C.UUACGGU.G...C...U...C......A...A...U.U...A...UC..G...A......A..A.....GG.U...G....A....U..GG.C...G...A...AgC.U...G...U.....C...A...A.C...-...G.G...U...G...G...C....G..AAA................................CAG.UU..GC.UA.A..CU.G.GGA..UC.CACAUAC...CA...UGCCUGU.G.GU..GAGUG
   NC_010694.1       GAUCG...A...CG...AAU...................UUGGUCGUAC...CAAA...GAGAGCUACAA......................................AGUUC..C.UUACGGU.U...C...U...A......C...C...A.U...G...GC..G...A......A..A.....GG.U...G....A....C..GG.C...G...A...G.C.A...G...G.....U...U...G.C...A...G.C...G...G...G...C....G..AAA................................CCG.UC..GC.AA.A..CU.G.GGA..CC.CGCACAC...CA...UGCCGGU.U.AU..CACCG
   NC_010814.1       CCUGG...C...CG...AUG...................GCCGGAAUAAcggUAUC...GCACUCAAUAA......................................UGAACuc-aGAGCCGG.G...C...-...-......-...A...C.C...G...GU..U...C......A..G.....GG.C...G....A....C..GG.C...G...A...-.C.C...G...G.....A...G...G.C...A...U.C...C...G...G...C....U..CAC................................CCA.GG..GC.CA.U..CC.G.---..CA.CGCACUC...AA...CACCGGU.A.A-..CCUGG
   NC_011144.1       -----...-...-C...AGG...................UCGACGGCAA...GGACcggGAAUCCUACAA......................................GGUUC..C.GUACGGC.G...C...C...C......-...G...C.C...U...GC..G...G......G.uG.....AA.G...G....A....C..GG.C...G...A...A.G.G...C...G.....U...C...-.-...A...A.G...C...G...C...G....G..CCA................................GCG.CCugGC.GG.A..GU.G.GGA..CC.CCUACAC...CA...CGCCGAU.C.AU..CACCG
   NC_011566.1       CAUCG...A...UG...AGU...................UAGGUCGUGA...AAAA...GAGCGUUAUAA......................................GGUUC..C.UUACGGU.A...C...G...G......U...U...C.U...A...GA..A...A......A..A.....CU.A...G....A....A..GA.C...G...C...A.C.C...U...G.....U...A...G.C...U...G.C...U...G...G...U....G..AGA................................UUA.UC..GC.UA.A..CU.G.GGA..UC.CUCAUAC...UC...ACCCGAU.U.AU..CACUG
   NC_011753.2       UAUUG...A...UG...AAU...................UCGGCCGCAC...UAAA...GAGAAGCACAA......................................ACUUC..C.UUACGGU.U...C...G...A......U...G...C.U...A...AC..C...A......A..A.....GG.C...G....A....C..AA.C...G..cA...G.C.A...G...U.....U...A...-.C...U...G.C...U...G...G...U....G..AAG................................UUG.UA..GC.UA.A..CU.G.GGA..AG.CGCAUAC...CA...UGCCAAU.C.AU..CACUG
   NC_012560.1       GGCCG...A...CG...AUU...................UCGGUCGCGA...GCGC...GAGCGCUACAA......................................GCUGC..C.GUACGGU.G...C...G...G......U...-...-.-...-...GA..U...C......U..C.....GG.U...G....A....A..GG.A...G...G...G.CgA...C...A.....A...G...G.U...C...A.G...C...-...-...-....-..---ccgggg..................gccauc..--G.UU..GC.CA.A..GU.G.GGA..CC.CGCACAC...UC...ACCCGAU.C.GU..GACCG
   NC_012691.1       -AUGG...A...CG...AAC...................UGGGACGGAC...GAAA...GAAAGUCACAA......................................ACUGC..C.AUACGGU.U...C...G...G......U...A...C.U...G...G-..-...-......-..A.....AG.U...G....A....A.aGA.U...G...G...U.C.A...G...G.....C...A...G.U...U...A.AagcC...G...G...U....G..AAA................................UCG.UG..GC.UA.A..CU.G.GGA..UC.CGCACAC...UC...ACCCAAU.C.AU..UACUG
   NC_012880.1       GAUCG...A...CG...AAU...................UCGGUCGUAC...CAAA...GAAAGCUACAA......................................AGUGC..C.UUACGGU.G...C...G...G......U...G...A.U...G...GC..G...A......A..A.....GG.C...G....A....C..GG.C...G...A...U.C.A...G...G.....U...C...A.G...C...G.G...C...G...G...C....G..AAA................................CCG.UG..GC.GA.A..CU.G.GGA..UC.CGCAUAC...CA...UGCCGGU.G.AU..UACCG
   NC_012912.1       GAUCG...A...CG...AAU...................UCGGCCGUAC...CAAA...GAAAGCUAUAA......................................AGUGC..C.UUACGGU.G...C...G...G......U...G...A.U...G...GC..G...A......A..A.....GG.U...A....A....C..GG.U...G...A...C.G.A...U...G.....U...C...G.C...G...G.G...C...G...G...U....G..AAA................................CCG.UC..GC.GA.A..CU.G.GGA..UC.CGCAUAC...CA...UGCCGGU.U.AU..CACCG
   NC_012962.1       GAUUG...A...CG...AAU...................UUGGCCGUAC...UAAA...GAAAGUUAUAA......................................AGUAC..C.UUAUGGU.G...C...G...G......U...A...C.U...C...GG..U...A......A..G.....GG.U...G....A....U..GG.U...G...A..gG.C.A...G...U.....U...A...A.C...-...G.G...U...G...G...C....G..AAA................................CCG.UU..GC.UA.A..CU.G.GGA..CC.CACAUAC...CA...UGCCAGU.U.GU..CAGUG
   NC_013422.1       GAUCG...A...UG...AUC...................AAGGCCGUGA...GCGU...GAGCGUUACAA......................................AAUUC..C.UUACGGC.G...C...G...G......Uc.aU...C.C...G...GG..U...C......A..A.....G-.-...G....A....A..GG.C...G...A...A.A.A...A...G.....U...U...G.C...C...G.G...U...G...G...U....A..CCA................................CCC.UG..GC.UA.C..UU.G.GGA..UC.CGCACAC...GC...AUCCCGU.U.GU..CAGUG
   NC_013456.1       CAUUG...A...UG...AGU...................UUGGUCGUAC...GAAA...GAGAAACACAA......................................ACUGC..C.UUACGGU.A...C...G...C......U...A...C.U...A...AG..C...A......A..A.....GG.A...G....A....U..GG.C...G...A..uA.C.A...G...-.....-...U...U.C...A...A.G...C...U...G..gC....G..AAA................................CAG.UU..GC.AA.A..CU.G.GGAagCA.CACACAC...UA...CCU--AU.C.AU..UACUG
   NC_013592.1       GAUCG...A...CG...AAU...................UCGGCCGUAC...CAAA...GAAAGCUAUAA......................................AGUGC..C.UUACGGU.G...C...G...G......U...C...A.U...G...GC..G...A......A..A.....GG.U...A....A....C..GG.U...G...A...C.G.A...U...G.....U...C...G.C...A...G.G...C...G...G...U....G..AAA................................CUG.UC..GC.GA.A..CU.G.GGA..UC.CGCACAC...CA...UGCCGGU.U.AU..CACCG
   NC_013851.1       GGUCG...A...CG...AGC...................GCGGCAUGGA...GAAG...GAGCGCUACAA......................................GGUGC..C.CUAUGGC.G...C...G...A......C...C...C.U...G...CG..C...G......U..C.....GG.C...G....A....C..GG.C...G...A...C.-.-...-...G.....C...C...GuC...A...A.G...C...C...G...G....G..---cg.........................acg..UGG.UU..GC.GA.C..CU.G.GGA..UC.CGCACAC...CC...ACCCCGU.G.GU..CACCG
   NC_013959.1       GACCG...A...CG...ACC...................AUGGCCGUGA...GCGC...GAGCGUCACAA......................................GGUGC..C.GUACGGU.G...C...C...A......A...C...C.U...G...AC..C...G......A..A.....CG.C...G....A....A..GG.C...A...A..gA.C.U...G...U.....G...C...G.U...G...C.A...G...G...-...C....G..AGA................................UCC.UG..GC.GA.C..CU.G.GGA..UC.CGCAUAC...CC...GUCCGAU.C.AU..UACCG
   NC_013961.1       GAUCG...A...UG...AAU...................UUGGUCGUAC...CAAA...GAGAGCUACAA......................................AGUUC..C.UUAUGGU.U...C...U...A......C...C...A.U...G...GC..G...A......A..A.....GG.U...G....A....C..GG.C...G...A...G.C.A...G...G.....U...U...G.C...A...G.C...G...G...G...C....G..AAA................................CCG.UC..GC.AA.A..CU.G.GGA..UC.CACACAC...CA...UGCCGGU.U.AU..CACCG
   NC_014008.1       CAUCG...UugaCG...AAG...................ACGAUCGCGA...GAUC...GAAAACUACAA......................................GAUCG..U.GGUUGGC.U...C...C...G......U...G...C.U...G...AC..A...C......G..U.....AA.C...G....A....C..GG.U...G...A...G.C.A...G...A.....U...C...G.A...G...A.A...G...G...G...C....G..AAG................................UCC.UC..GC.AA.U..GU.G.GGA..CC.CGCAUAA...CA...UUCCGAU.U.CU..UUCCG
   NC_014012.1       UAUCG...A...UG...AGC...................UUGGACGUGA...GAAA...GAGCGUUAUAA......................................GGUUC..C.UUACGGU.A...C...G...A......U...U...C.U...A...GA..G...A......A..A.....CU.A...G....A....A..GA.A...U...C...U.A.U...U...G.....U...A...A.C...A...G.C...U...G...G...C....G..AAA................................UCA.UC..GC.UA.A..CU.G.GGA..UC.CUCACAC...UC...ACCCAAU.U.AU..CUCUG
   NC_014034.1       CGUCU...C...GG...AAC...................AGGGCGAGGA...ACGG...GCGAGCCACAA......................................GCUGU..C.CUACGGC.U...C...G...A.....aG...A...U.C...U...UC..G...U......C..A.....-A.G...G....A....U..GG.C...G...A...C.G.C...G...G.....U...C...A.A...A...C.G...C...G...G...C....AccAAA................................CUG.U-..UC.GA.A..UG.-.GGA..CC.CCUACAC...CC...UGCCGAU.C.AU..CGCCG
   NC_014306.1       GAUCG...A...CG...AAU...................UUGGUCGUAC...CAAA...GAGAGCUAUAA......................................AGUUC..C.UUACGGU.U...C...A...A......C...C...A.U...G...GC..G...A......A..A.....GG.C...G....A....C..GG.C...G...A...G.C.A...G...G.....U...U...G.C...A...-.G...C...G...G..gC....G..AGA................................CCG.UA..GC.AA.A..CU.G.GGA..UC.CGCACAC...CA...UGCCAGU.G.AU..CACCG
   NC_014365.1       GAUGG...G...CG...AGG...................GCGGCCGCGA...GCGC...GAGCGCCACAA......................................GGUGC..C.CUACGGC.G...C...G...C......G...G...U.U...G...AC..U...U......U..U.....GC.C...G....A....G..GG.C...G...A...C.A.A...G...G.....UccaG...G.C...C...G.G...C...G...A...C....A..---................................UCA.UC..GC.CC.A..CU.G.GGA..UC.CCUACAC...CU...CGCCGAU.U.CU..CACCG
   NC_014500.1       GAUCG...A...CG...AAU...................UCGGUCGUAC...CAAA...GAAAGCUAUAA......................................AGUGC..C.UUACGGU.G...C...G...G......U...U...A.U...G...GG..U...A......A..A.....GG.C...G....A....U..GG.U...U...C...C.G.A...A...G.....U...U...A.A...C...G.G...U...G...G...C....G..AUA................................CCG.UA..GC.GA.A..CU.G.GGA..UC.CGCAUAC...CA...UGCCGGU.U.AU..CACCG
   NC_014541.1       UAUUG...A...CG...ACC...................UGGGUCGCGA...GAAG...GAGCGUUACAA......................................GCUGC..C.UUACGGU.G...C...U...G......U...U...C.U...G...GA..C...A......A..G.....AG.C...G....A....A..GG.C...G...C...U.G.C...G...G.....U...U...G.C...C...G.C...U...G...G...C....G..ACA................................UCG.UU..GC.CA.A..CU.G.GGA..CC.CGCACAC...UC...ACCCGAU.C.AU..CACCG
   NC_014909.2       UGUAG...A...UA...AGU...................UUGAUAGAAC...UAAA...GAAAGUUAUAA......................................GAUUC..C.GUAUGGA.U...C...U...A......C...G...G.U...A...AU..A...A......A..A.....CA.A...G....A....U..GG.A...G...A...G.C.U...A...G.....U...A...A.U...U...A.G...C...G...G...A....G..AAG................................UAG.UA..GC.UU.A..UU.G.GGA..UC.CUCAUAC...UA...U---GCC.A.GU..AAUUG
   NC_015554.1       UAUCG...A...UG...AAC...................AAGGUCGUGA...GAAA...GAGCGCUAUAA......................................AGUAC..C.UUACGGU.G...C...U...G......U...A...C.U...U...AG..C...G......U..G.....GA.U...G....A....C..GG.U...G..cA...A.C.U...Au.uG.....C...A...G.C...U...G.G...C...G...A...C....G..---................................UUG.UU..GC.UA.A..CU.G.GGA..UC.CGCAUAG...UC...ACCCAAU.C.GU..AACUG
   NC_015559.1       --CUG...A...UG...AAG...................CUGGUCGUGA...GAAA...GAGCGUUACAA......................................GCUAC..C.UUAUGGU.G...C...G...G......U...A...U.U...G...AG..U...G......U..U.....CG.U...G....A....A..GG.U...G...A..uG.C.U...Gu.uG.....A...A...G.C...U...G.G...C...C...-...-....-..AGA................................UCG.UU..GC.UA.A..CU.G.GGA..UC.CACACAC...UC...ACCCAAU.C.GU..UUCUG
   NC_015567.1       GAUCG...A...CG...AAU...................UCGGCCGUAC...CAAA...GAACGCUAUAA......................................AGUGC..C.UUACGGU.U...C...U...G......U..cA...U.G...G...GC..A...-......A..A.....GG.U...G....A....C..GG.U...G...C...AgA.A...G...U.....U...A...A.C...-...G.G...C...G...G...C....G..AGA................................CCG.UU..GC.UA.A..CU.G.GGA..UC.CGCACAC...CA...UGCCAGU.U.AU..CACCG
   NC_015572.1       -AUGG...A...UG...AUU...................ACGGACGCGA...AAGA...GAGCGUUAUAA......................................AAUUC..C.UUACGGG.G...C...U...G......U...G...U.U...Gu.cGA..U..cG......A..A.....GA.C...G....G....U..AG.U...G...-...-.C.G...G...U.....Ua.aA...G.C...C...G.G...U...G...A...-....-..-UA................................UCA.UC..GU.UA.A..UU.G.GGA..CC.CGCAUAC...AC...AUCCGGU.C.AU..CACCG
   NC_015581.1       ----A...Gg.aUG...CAG...................CGGGUCGUGA...GAAA...GAGCGUUAUAA......................................AAUUC..C.UUACGGU.G...C...A...A......U...A...C.U...A...G-..-...-......-..U.....GG.U...G....A....C.aGA.A...G...G...U.C.A...G...-.....-...-...-.-...-...-.-...C...-...-...-....-..---aacuaagcuc..........uggugagauu..--A.UU..GC.AA.C..CU.G.GGA..UC.CACAUAC...UC...ACCCAGU.U.AU..UUCAG
   NC_015968.1       GAUCG...A...CG...AAU...................UCGGUCGUAC...CAAA...GAGAGCUAUAA......................................AGUGC..C.UUACGGU.G...C...U...G......U...U...A.U...G...GC..G...A......A..A.....GG.U...G....A....U..GG.C...G...A...G.C.A...G...G.....U...U...G.C...U...G.G...C...G...G...C....G..AAA................................CCG.UA..GC.AA.A..CU.G.GGA..UC.CACACAC...CA...UGCCGGU.U.AU..CACCG
   NC_017554.1       GAUCG...A...CG...AAU...................UUGGCCGUAC...UAAA...GAGAGCUAUAA......................................AGUUC..C.UUACGGU.G...C...G...A......C...C...A.U...G...GC..G...A......A..A.....GG.U...G....A....U..GG.U...G...A...G.C.A...G...G.....U...U...G.C...U...G.C...G...G...G...C....G..AAA................................CCG.UU..GC.AA.A..CU.G.GGA..UC.CGCAUAC...CA...UGCCGGU.U.AU..CACUG
   NC_017857.3       GAUUG...A...UG...AAA...................AUGGCCGUGA...GCGU...GAACGUUACAA......................................GAUUC..C.AUAUGGU.G...C...U...G......A...A...A.U...U...GC..U...G......U..A.....GC.A...G....A....U..GA.U...G...A..uG.C.A...Gu.uG.....A...U...G.C...A...-.-...-...G...G...A....C..AAA................................UCG.UA..GC.AA.C..CU.G.GGA..UC.CACAUAC...UC...AUCCGGU.U.GU..AACGG
   NC_017910.1       GAUCG...A...CG...AAU...................UCGGCCGUAC...CAAA...GAAAGCUAUAA......................................AGUGC..C.UUACGGU.U...C...C...G......U...A...C.U...G...UC..U...A......A..A.....GG.U...G....A....U..GG.C...G...A...G.C.A...G...G.....U...U...G.C...C...G.G...C...G...G...U....G..AAA................................CCG.UU..GC.AA.A..CU.G.GGA..UC.CGCACAC...CA...UGCCGGU.U.AU..CACCG
   NC_017956.1       -CUUG...C...CG...AGG...................ACGGCCGCGA...GAAG...GCGCGGCACAA......................................GGUGC..C.CUAUGGU.G...G...U...C......G...U...C.U...G...UU..C...G......U..G.....GA.C...G....A....G..GG.C...C...A...G.A.U...G...G.....U...C...A.C...C...G.C...C...G...G...C....C..A--gc..........................gu..CUG.GC..G-.-G.A..CU.G.GGA..CC.CGUAUAC...GG...UGCCGAU.C.AU..CACCG
   NC_018419.1       GAUUG...A...UG...AAU...................UUGGCCGUAC...CAAA...GAAAGCUAUAA......................................AGUGC..C.UUAUGGC.G...C...A...G......U...C...A.U...G...GC..C...A......A..A.....GG.U...G....A....U..GG.U...G...C...A.G.A...A...A.....U...C...A.U...G...G.G...G...G...G...C....G..AAA................................CUG.UU..GC.UA.A..UU.G.GGA..UC.CGCAUAC...UA...UGCCGGU.U.AU..CACUG
   NC_018420.1       AAUUG...A...CG...AAU...................ACGGACGUAC...AAAA...GAAAACUAUAA......................................AAUAC..C.UUAUGGU.G...C...G...G......U...G...A.U...G...GC..C...A......A..A.....GG.A...A....A....C..GG.U...G...U...A.C.A...A...G.....U...U...A.U...G...G.G...U...G...G...A....G..AUA................................CAG.UU..GC.AA.A..CU.G.GGA..UC.CGCAUAC...CA...UGCCAGU.A.AU..AACUG
   NC_018691.1       GGCCG...A...UG...AUC...................UGGGCCGCGA...GCGC...GAGCGCUACAA......................................AGUGC..C.CUACGGU.G...C...U...C......U...-...-.-...-...GG..U...U......A..C.....GG.U...G....A....A.uGA.A...G...G...G.A.A...U...U.....C...C...G.U...G...G.A...C...G...G...-....-..---uggu......................cagg..UCG.UG..GC.GA.C..CU.G.GGA..CC.CGCACAC...UC...ACCCGAU.C.AU..CGCCG
   NC_018695.1       CACCG...A...CG...ACC...................ACGGUCGCGA...GCGC...GAACGUCACAA......................................GGUGC..C.GUACGGC.G...C...G...Ac...gcU...A...U.U...G...--..-...C......A..A.....CU.G...G....A....C..GG.C...G...C...G.C.A...G...A.....U...C...A.A...G...G.C...C...G...Gc.aC....G..CAA................................CUG.GC..--.GA.C..GU.G.GGA..CC.CGAUGAC...GC...GUCCGAU.C.AU..CACCG
   NC_019940.1       GUCCG...A...CG...AG-aag..........ggcc..UCGAGC----...--GC...GAGCGUUACAA......................................GGUGC..C.CUACGGU.G...C...C...A......C...G...C.U...G...CG..C...G......U..C.....GA.C...A....G....C..GG.C...G...A...U.C.A...G...G.....U...C...A.C...C...G.G...C...G...G...G....C..AGG................................UGG.UC..GC.GA.C..CU.G.GGA..CC.CGCAUAC...CC...ACCCGGU.C.AU..CACCG
   NC_020813.1       UAUCG...A...CG...AAA...................CAGGUCGUGA...GCGU...GAGAACUUUAA......................................AUUAG..U.UUACGGU.A...C...U...G......U...A...U.U...A...AG..C...U......A..C.....AA.C...G....A....A..GG.C...G...A...C.A.A...A...G.....U...G...G.C...U...A.A...A...G...G...C....G..CAA................................CUG.UU..GC.UG.A..GU.G.GGA..UC.CAUAUUC...UA...AUCCGAU.U.AU..CUCUG
   NC_021057.1       AAUUG...A...CG...AAU...................UCAGCCGUAC...UAAA...GAAAGUUAUAA......................................AGUGC..C.UUAUGGU.G...C...C...G......U...G...A.U...G...GC..C...A......A..A.....GG.C...G....A....C..GG.U...G...C...C.G.A...G...A.....U...A...A.U...U...G.G...U...G...G...A....G..AAA................................CAG.UG..GC.CA.A..UU.G.GGA..UC.CACAUAC...CA...UGCCAGU.A.AU..CACGG
   NC_021291.1       CAUGG...A...UG...AGG...................CCGGUCGUGA...GCGU...GAGCGCUACAA......................................GGUGC..C.CUACGGU.G...C..cA...C......C...A...U.C...G...C-..-...C......G..C.....GG.C...G....-....-..GA.C...G...A...A.G.A...G...G.....C...C...G.U...G...G.AggcC...G...G...U....C..AGA................................UCG.UG..GC.GA.C..CU.G.GGA..UC.CGCACAC...CC...ACCCGAU.C.AU..CACCG
   NC_021505.1       UGCCG...A...CG...AAU...................UCGGUCGUGA...GCGU...GAGCGUUACAA......................................GCUGC..C.UUACGGU.G...C...G...G......Ug.aU...U.U...C...GG..U...C......A..A.....G-.-...G....A....A..GG.U...G...A...A.A.A...G...G.....U...C...G.A...A...G.C...U...G...G...C....G..CCA................................UCG.UC..GC.CA.A..GU.G.GGA..CC.CGCACAC...CC...ACCCGAU.C.GU..UACCG
   NC_021870.1       GAUCG...A...CG...AAU...................UUGGCCGUAC...CAAA...GAAAGUUAUAA......................................AGUGC..C.UUACGGU.G...C...C...G......U...U...A.U...G...GC..A...A......A..A.....GG.U...G....A....U..GG.C...G...A...A.C.A...G...G.....U...U...G.C...C...G.G...C...G...G...U....G..AAA................................CCG.UU..GC.AA.A..CU.G.GGA..UC.CGCACAC...CA...UGCCGGU.U.AU..UACUG
   NZ_AP010872.1     AAUUG...A...UA...AUU...................UUGGUCGUAU...ACAA...GAAAACCAUAA......................................AGUUC..C.UUAUGGG.G...C...U...A......U...U...C.U...A...GC..U...A......A..A.....AG.U...G....A....C..AA.U...G...A...A.C.A...A...G.....UaaaU...G.C...U...G.G...-...-...-...A....G..AAG................................UAG.UA..GC.AC.A..UU.G.GGA..UC.CCCAUAC...UA...UACCUAU.A.AU..AACUG
   NZ_AP012978.1     CGUCG...A...CG...AGA...................UCGGCCGCGA...GCGC...GAGCGUUACAA......................................GCUGC..C.CUAUGGC.G...C...C...G......A...G...U.U...G...CA..G...G......U..G.....CG.C...G....A....G..GG.C...G...A...A.A.A...G...G.....U...C...G.A...G...G.G...U...G...G...C....C..AGA................................CCG.UG..GC.UA.C..CU.G.GGA..CC.CGCACAC...CC...ACCCCAU.C.AU..UACCG
   NZ_AP014521.1     UGUUA..gA...UG...AUU...................UUGGUAGAAC...AAAA...GAAAGUUAUAA......................................ACUUC..C.AUAUGGU.G...C...U...A......U...U...A.U...G...GA..A...A......A..A.....GG.U...G....A....U..GG.A...A...U...G.C.A...Ua.gU....uA...U...G.C...A...G.G...U...G...A...-....-..-AA................................UUA.UU..GC.UA.A..UU.G.GGA..UC.CUCAUAC...UA...UGCCAGU.G.AU..UAAUG
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   NZ_CP054043.1     GAUCG...A...CG...AAU...................UCGGUCGUAC...UAAA...GAGAGCUACAA......................................AGUGC..C.UUACGGU.G...C...C...G......U...A...A.U...G...GG..C...A......A..A.....GG.C...G....A....U..GG.C...G...C...A.G.A...A...G.....U...G...G.U...U...G.G...C...G...G...C....G..AAA................................CCG.UU..GC.UA.A..CU.G.GGA..UC.CGCACAU...CA...UGCCAGU.U.GU..GACCG
   NZ_CP054058.1     GAUCG...A...CG...AAU...................UCGGUCGUAC...CAAA...GAAAGCUAUAA......................................AGUGC..C.UUACGGU.G...C...U...G......U...A...A.U...G...GC..G...A......A..A.....GG.U...G....A....U..GG.U...G...A...G.C.A...G...G.....U...U...G.C...U...G.G...C...G...G...C....G..AGA................................CCG.UA..GC.AA.A..CU.G.GGA..UC.CGCACAC...CA...UGCCGGU.U.AU..CACUG
   NZ_CP054150.1     GGUGC...C...GA...AAA...................GGCGCUUCAC...GCCG...GGAAAAGCC-U......................................CUUAC..C.CGCCGGU.G...U...G...A......C...G...C.U...G...GU..G...A......A..A.....GG.C...A....A....U..UU.C...G...G...A.C.G...C...G.....G...-...-.-...-...-.-...-...-...-...-....-..---ugaugcgguugccaucaugggcgcacaggc..---.--..--.--.-..GC.G.CGA..AAuUGCCCGUgggCU...UGCCGGU.U.ACgaCGCCG
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   NZ_CP054599.1     CCUCG...A...CG...AAA...................ACGGUGAAGA...ACGU...GCCAGCCACAA......................................GGUGG..G.UUACGGC.U...C...G...A......A...A...C.U...G...UU..C...G......U..C.....AA.G...G....A....C..GG.C...G...Ac.aC.C.A...U...U.....G...C...G.C...G...G.U...C...G...G...C....C..AAG................................CUG.UU..-C.GA.-..AU.G.GGA..CC.CCUACAC...CC...UGCCGAU.C.AU..CGCCG
   NZ_CP055055.1     GAUCG...A...CG...AAU...................UCGGUCGUAC...CAAA...GAAAGCUACAA......................................AGUAC..C.UUACGGU.G...C...G...G......U...A...C.U...G...GC..A...A......A..A.....GG.C...G....A....U..GG.C...G...A...A.C.A...G...G.....U...U...G.C...U...G.G...C...G...G...C....G..AAA................................CCG.UU..GC.AA.A..CU.G.GGA..CC.CGCACAC...CA...UGCCGGU.U.AU..CACCG
   NZ_CP055302.1     UAUCG...A...CA...CCU...................UUGGUCGUAC...CAAA...GAGAACUACAA......................................GGUGC..C.UUACGGU.G...C...A...G......U...G...U.U...A...UC..G...A......A..A.....AA.U...G....A....U..GG.U...G...-...-.C.A...G...AaguaaA...U...G.C...A...G.G...U...-...-...-....G..AAG................................UAG.UA..GC.AA.A..CU.G.GGA..UC.CGCAUAC...AA...UGCCAGU.U.AU..CUCAG
   NZ_CP056030.1     CGCCG...A...CG...ACU...................UCGGUCGUGA...GCGC...GAGCGCUACAA......................................GCUGC..C.GUACGGU.G...C...U...G......U...-...-.-...-...GA..U...C......U..C.....GG.U...G....A....A..GG.A...A...G...G.CgA...C...A.....A...G...G.U...C...G.A...C...G...C...-....-..---uggu......................gcca..UCG.UG..GC.CA.A..GU.G.GGA..CC.CGCACAC...CC...ACCCGAU.C.GU..UACCG
   NZ_CP059560.1     CGCCG...A...CG...ACA...................UGGGCCGCGA...GCGC...GAGCGUCACAA......................................GCUGC..C.GUACGGU.G...C...GacgU......U...G...U.U...G...GU..C...G......A..C.....GA.C...G....G....U..GC.Cg.cG...A...U.C.A...A...-.....-...G...G.C...C...G.G...C...G...U...C....A..UGC................................UCG.CC..AC.C-.-..-U.G.GGA..UC.CGCAUAC...CC...GACCGAU.C.GU..CACGG
   NZ_CP059563.1     GAUUC...A...CG...A--cc............aga..UGGGACGUGA...GCGC...GAACGCCACAA......................................AGUGC..C.UUACGGU.G...C...G...A......C...U...U.U...G...AA..A...G......U..G.....UA.U...G....A....C..GG.C...G...A...A.G.A...A...-.....U...U...G.C...A...G.G...C...A...G...G....C..GCA................................CUG.UU.gGC.GA.C..UU.G.GGA..CC.CGCAUAC...CC...ACCCGAU.U.AU..CACCG
   NZ_CP059690.1     AAUUG...A...CG...AAU...................UCGGUCGUAC...GAAA...GAGAGCUACAA......................................AGUGC..C.UUACGGU.G...C...U...C......A...A...U.U...A...GC..G...A......A..A.....GG.U...G....A....U..GG.U...G...A...AgC.G...G...U.....U...A...A.C...-...G.G...U...G...G...C....G..AAA................................CUG.UU..GC.UA.A..CU.G.GGA..UC.CACAUAC...AA...UGCCAGU.U.GU..GAGUG
   NZ_CP060009.1     GGCUG...A...CG...AGU...................UCGGUCGUGA...GCGU...GAGCGCUACAA......................................GCUGC..C.GUACGGU.G...C...C...G......U...-...-.-...-...GA..U...U......U..C.....CG.U...G....A....A..GG.A..aG...G...U.G.A...C...A.....A...G...G.U...C...G.A...C...G...C...-....-..---uggc......................gcca..UCG.UC..GC.CA.A..GU.G.GGA..CC.CGCACAC...CC...ACCCGAU.C.GU..GACCG
   NZ_CP060401.1     GAUCG...A...CG...AUU...................UCGGUCGUAC...UAAA...GAAAGCUAUAA......................................AGUGC..C.UUACGGC.U...C...G...G......U...A...U.U...G...GC..A...A......A..A.....GG.U...G....A....U..GG.U...G...A...G.A.A...A...G.....U...G...A.C...C...G.G...C...G...G...U....G..AAA................................CCG.UU..GC.GA.A..CU.G.GGA..UC.CACAUAC...CA...UGCCAGU.U.GU..GAGUG
   NZ_CP061079.1     UGCUG...A...CG...ACU...................UCGGUCGUGA...GCGC...GAGCGUUACAA......................................GCUGC..C.GUACGGU.G...C...U...Gu...gaU...U...U.C...G...GU..U...A......A..A.....GA.G...G....G....U..GA.C...A...A...G.G.U...C...G.....A...C...G.C...U...-.-...-...G...G...C....U..CUA................................UCG.UG..GC.CA.A..GU.G.GGA..UC.CGCACAC...CC...ACCCAAU.C.GU..UACCG
   NZ_CP061081.1     --CUG...A...CG...AAG...................CGGGUCGUGA...GAAA...GAACGUUAUAA......................................ACUUC..C.UUAUGGU.G...C...G...G......U...A...U.U...G...AG..U...G......U..A.....CG.U...G....A....A..GG.C...G...A...U.C.A...A...G.....U...A...A.C...-...G.G...C...G...G..gU....C..AAA................................UCG.UC..GC.UA.A..CU.G.GGA..UC.CACAUAC...AC...ACCCAAU.C.GU..-AUCU
   NZ_CP061280.1     UAUCG...A...CA...CUU...................UCGGUCGUAC...CAAA...GAGAACUAUAA......................................AGUGC..C.UUACGGU.G...C...A...G......U...G...U.U...A...UC..G...A......A..A.....AA.U...G....A....C..GG.U...G...C...A.G.A...A...G.....UgaaU...G.C...A...G.G...U...-...-...-....G..AAG................................UAG.UU..GC.GA.A..UU.G.GGA..UC.CGCACAC...AA...UGCCGGU.U.AU..CUCAG
   NZ_CP061941.1     -----...A...UG...AUG...................CGGGUCGUGA...GAAA...GAGCGUUACAA......................................GUUAC..C.AUACGGU.G...C...U...G......U...A...U.U...G...AA..C...G......U..U.....AA.A...G....A....A..GG.U...G...A...U.G.A...G...G.....U...U...G.U...U...G.C...U...G...G...U....C..AAG................................UAA.UU..GC.UA.A..CU.G.GGA..CC.CUCAUAC...AC...ACCCAAU.C.GU..UUCUG
   NZ_CP062006.1     UGUGG...U...CG...UGG...................ACGGCAAGGA...CCGC...GAAACCCACAA......................................GGUCC..C.GUACGGCgC...U...C...G......C...A...U.C...C...GC..G...U......C..A.....-A.G...G....A....A..GG.C...G...C...C.G.A...C...A.....U...C...G.C...C...A.A...G...G...G...C....C..AAC................................GUC.UG..GC.GG.A..GU.G.GGA..CC.CCUACAC...CA...CGCCGAU.C.CU..GACCG
   NZ_CP062158.2     CGCUG...A...UG...ACU...................UCGGUCGUGA...GCGU...GAGCGCUACAA......................................GCUGC..C.GUACGGU.G...C...U...Gu...uaU...C...U.C...G...GU..U...A......A..A.....GA.G...G....G....U..GA.C...A...A...G.G.U...C...G.....A...U...G.C...U...-.-...-...G...G...C....U..CAA................................UCG.UA..GC.CA.A..GU.G.GGA..UC.CGCACAC...UC...ACCCAAU.C.GU..UACCG
   NZ_CP062252.1     CGCUG...A...UG...ACU...................UCGGUCGUGA...GCGC...GAGCGUUACAA......................................GCUGC..C.GUACGGU.G...CuguG...A......U...U...U.C...G...GU..U...A......A..A.....GA.A...G....G....U..GA.C...A...A...G.G.U...C...G.....A...C...G.C...U...G.G...C...G...-...-....-..CAA................................UCG.UG..GC.CA.A..GU.G.GGA..UC.CGCACAC...UC...ACCCGAU.C.GU..UACCG
   NZ_CP062253.1     CGCUG...A...UG...ACU...................UCGGUCGUGA...GCGC...GAGCGUUACAA......................................GCUGC..C.GUACGGU.G...CcguG...A......U...U...U.C...G...GU..U...A......A..A.....GA.G...G....G....U..GA.C...A...A...G.G.U...C...G.....A...C...G.C...-...-.-...C...G...G...C....G..CUA................................UCG.UG..GC.CA.A..GU.G.GGA..UC.CGCACAC...UC...ACCCGAU.C.GU..UACCG
   NZ_CP062500.1     UAUUG...A...UG...AAU...................UCGGCCGUAC...GAAA...GAGAAGCACAA......................................ACUUC..C.UUACGGU.U...C...G...A......U...G...C.U...A...AC..C...A......A..A.....GG.C...G....A....C..AA.C...G..cA...G.C.A...Gu.aA.....C...G...G.C...U...G.G...U...-...-...-....G..AAG................................UUG.UU..GC.UA.A..CU.G.GGA..AG.CGCAUAC...CA...UGCCAAU.C.AU..CACUG
   NZ_CP063056.1     UACAG...A...UG...CAU...................UCGGUCGUAC...CAAA...GAACAUUAUAA......................................AGUGC..C.UUACGGU.G...C...G...G......U...A...U.U...G...A-..A...U......A..A.....GG.C...-....-....U..GA.C...G...G...C.C.A...A...G.....A...A...G.U...A...A.A...UgcaG...G...C....G..AAA................................CCG.UU..GC.GA.A..CU.G.GGA..UC.CGCAUAC...CA...UGCCGGU.U.GU..CUCCG
   NZ_CP063425.1     GAUCG...A...CG...AAU...................UCGGUCGUAC...CAAA...GAAAGCUAUAA......................................AGUGC..C.UUACGGU.G...C...G...G......U...C...A.U...G...GC..G...A......A..A.....GG.U...G....A....U..GG.C...G...A...G.C.A...G...G.....U...U...G.C...U...G.G...C...G...G...U....G..AAA................................CCG.UU..GC.AA.A..CU.G.GGA..UC.CGCACAC...CA...UGCCGGU.U.AU..CACUG
   NZ_CP063456.1     UGCCG...A...CG...AGU...................UCGGUCGUGA...GCGU...GAGCGCUACAA......................................GCUGC..C.UUAUGGU.G...C...G...G......U...Aa.uU.U...C...GG..U...C......A..A.....G-.-...G....A....A..GG.U...G...A...A.A.A...G...G.....U...C...G.A...A...G.C...U...G...G...C....G..CUA................................UCG.UC..GC.CA.A..GU.G.GGA..CC.CGCACAC...CC...ACCCGAU.C.GU..UACCG
   NZ_CP063663.1     CAUUG...A...UA...GCU...................UCGGUCGUGA...GAAA...GAGCGUUAUAA......................................AGUAC..C.UUACGGU.G...C...G...G......U...G...U.U...A...AC..A...G......U..A.....CA.A...G....A....U..AA.U...G...C...A.G.A...A...G.....U...U...C.A...A...G.G...U...A...A...C....G..AUA................................UCG.UU..GC.AA.C..UU.G.GGA..UC.CGCAU--...--...AGUCACC.C.AA..U----
   NZ_CP064781.1     CACCG...A...CG...ACA...................ACGGCCGCGA...GCGC...GAGCGCCACAA......................................GGUGC..C.GUACGGC.G...C...C...A......C...G...C.U...G...CA..G...G......U..G.....GG.C...G....A....C..GG.C...C...A...G.C.A...G...G.....U...C...A.A...G...G.C...C...G...G...C....GccAAG................................CUG.GC..--.GA.C..CU.G.GGA..CC.CGCACAC...CC...GCCCGAU.C.AU..CAGCG
   NZ_CP064795.1     UACCG...A...UA...CUC...................ACGGUCGUGA...GAAA...GAGCGCUACAA......................................GGUAC..C.UUAUGGU.G...C...G...G......U...G...C.U...G...UC..G...G......U..A.....GA.U...G....A....A..GG.U...G...C...A.C.A...A...G.....U...AaacG.C...U...G.G...C...G...A...C....-..--A................................UCG.UU..GC.UA.C..CU.G.GGA..CC.CGCAUAG...UC...ACCCGAU.U.AU..UGUUG
   NZ_CP065044.1     GAUCG...A...CG...AAU...................UCGGACGUAC...UAAA...GAAAGCUAUAA......................................AGUGC..C.UUACGGU.G...C...G...G......C...A...A.U...G...GC..G...A......A..A.....GG.U...G....A....U..GG.U...G..cA...G.A.A...G...U.....U...A...G.C...-...G.G...U...G...G...C....G..AAA................................CCG.UA..GC.UA.A..CU.G.GGA..UC.CACAUAC...CA...UGCCAGU.U.AU..CACCG
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   NZ_CP065534.1     GAUCG...A...CG...AAU...................UUGGUCGUAC...UAAA...GAAAGCUAUAA......................................AGUGC..C.UUACGGU.G...C...U...G......U...G...A.U...G...GC..G...A......A..A.....GG.C...G....A....C..GG.C...G...A...A.G.C...C...G.....U...A...G.C...G...G.G...U...G...G...U....G..AAA................................CUG.UA..GC.AA.A..CU.G.GGA..UC.CGCACAC...CA...UGCCGGU.C.AU..CACGG
   NZ_CP065626.1     GAUCG...A...CG...AGU...................UUGGUCGUAC...CAAG...GAAAGCUAUAA......................................GGUGC..C.UUAUGGU.G...C...U...A......C...G...C.U...G...GC..C...A......A..G.....GG.U...G....A....C..GG.C...G...C...C.G.A...G...G.....U...G...A.A...C...G.G...U...G...G...U....G..AAA................................CGG.UC..GC.UA.A..CU.G.GGA..UC.CGCAUAC...CA...UGCCGGU.U.AU..CUCUG
   NZ_CP065640.1     GAUCG...A...CG...AAU...................UCGGCCGUAC...CAAA...GAGAGCUACAA......................................GGUGC..C.UUACGGC.G...C...C...G......U...G...A.U...G...GC..G...A......A..A.....GG.C...G....A....C..AA.C...G...C...G.G.A...A...G.....U...G...A.C...C...G.G...C...G...G...U....G..AAA................................CCG.UU..GC.GA.A..CU.G.GGA..UC.CGCACAC...CA...UGCCGGU.U.GU..CAGUG
   NZ_CP065651.1     GG---...A...CG...AGA...................UGGGCCGUAC...CAAG...GAAAGCCACAA......................................GCUGC..C.UUACGGU.U...C...C...G......U...G...C.U...G...G-..-...-......-..A.....AG.U...G....A....A.aGA.U...G...G...C.C.A...G...G.....C...C...G.UgaaC...G.C...C...G...G...U....G..AAA................................CCG.UC..GC.CA.A..CU.G.GGA..UC.CGCACAC...UC...ACCCGAU.C.AU..CACCG
   NZ_CP065670.1     GAUCG...G...CG...AAA.................ccCCGGUCAUGA...U---...----GCGGCUU......................................CGCGA..-.-GACGGU.G...C...G...G......C...A...GgU...G...GC..A...C......A..G.....GC.C...G....A....U..GU.C...G...A...U.G.U...G...C.....U...G...G.U...C...G.A...G...G...G...C....G..AGA................................CGG.GC..AC.CG.G..CA.A.GGA..AC.UGGUCGC...AC...UGCUUCU.-.-U..CACCG
   NZ_CP065745.1     GGACG...A...--...-CA...................UGGGCCGUAC...CAAG...GAAAGCCACAA......................................GCUGC..C.UUACGGU.U...C...C...G......U...G...C.U...G...G-..-...-......-..A.....AG.U...G....A....A.gGA.C...G...G...C.C.A...G...G.....C...U...G.U...G...A.A...C...GcugG...C....G..AGA................................CCG.UU..GC.CA.A..CU.G.GGA..UC.CGCACAC...CC...ACCCGAU.C.AU..CACCG
   NZ_CP065838.1     GAUCG...A...CG...AAU...................UCGGUCGUAC...CAAA...GAGAGCUAUAA......................................AGUGC..C.UUACGGU.G...C...G...G......U...U...A.U...G...GC..G...A......A..A.....GG.C...G....A....C..GG.U...G...A...G.C.A...G...G.....U...U...G.C...C...G.G...C...G...G...U....G..AAA................................CCG.UC..GC.AA.A..CU.G.GGA..UC.CGCACAC...CA...UGCCGGU.U.AU..CACCG
   NZ_CP066075.1     CACCG...A...CG...ACC...................ACGGUCGCGA...GCGC...GAACGUCACAA......................................GGUGC..C.GUACGGC.G...C...G...A......C...G...C.U...G...UU..G...C......A..A.....CU.G...G....A....C..GG.C...G...C...G.C.A...G...A.....U...C...A.A...G...G.C...C...G...Gc.aC....G..CAA................................UUG.GC..--.GA.C..GU.G.GGA..CC.CGAUGAC...GC...GUCCGAU.C.AU..CACCG
   NZ_CP066092.1     GGACG...A...--...-CA...................UGGGCCGUAC...CAAG...GAAAGCCACAA......................................GCUGC..C.UUACGGU.U...C...C...G......U...G...C.U...G...G-..-...-......-..A.....AG.U...G....A....A.gGA.C...G...G...C.C.A...G...G.....C...A...G.U...G...A.AcgcC...G...G...C....G..AAA................................CCG.UU..GC.UA.A..CU.G.GGA..UC.CGCACAC...UC...ACCCGAU.C.AU..CACUG
   NZ_CP066126.1     GAUCC...A...CG...A--cg............aua..UGGGCCGUGA...GCGC...GAGCGUCACAA......................................AGUGC..C.GUACGGC.G...C...G...Ac...ccU...G...A.U...G...GU..C...A......C..C.....GA.C...G....Gu..cU..GG.U...G...A...U.C.A...A...-.....-...G...G.C...G...G.G...C...G...C...-....-..---.............................g..GUG.UU.gGC.CA.C..UU.G.GGA..CC.CGCACAC...CC...GUCCGAU.C.AU..CACCG
   NZ_CP066167.1     GACUG...A...UA...GCA...................GUGGUCGUGA...GCGG...GAGCGCUAUAA......................................ACUGC..C.CUACGGU.G...C...C...A......U..cA...U.-...-...--..U...A......A..Ag..ucGC.C...G....A....C..CG.C...G...A...U.A.C...G...G.....U...U...G.C...C...G.C...C...G...G...U....G..AUA................................UCG.UU..GC.UA.A..CU.G.GGA..CG.CGCACAC...CC...ACCCCAU.C.GU..CACCG
   NZ_CP068551.1     GGCCG...A...CG...AGU...................UCGGUCGUGA...GCGC...GAGCGCUACAA......................................GCUGC..C.GUACGGU.G...C...C...G......U...-...-.-...-...GA..U...U......U..C.....CG.U...G....A....A..GG.A...A...G...G.CgA...C...A.....A...G...G.U...C...G.A...C...G...C...-....-..---uggc......................gcca..UCG.UC..GC.CA.A..GU.G.GGA..CC.CGCACAC...CC...ACCCGAU.C.GU..GACCG
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   NZ_CP080627.1     GACCA...-...--...---...................-UGGUCGUGA...GCGU...GAGUACUAUAA......................................ACUGC..C.CUACGGU.G...C...C...G......A...G...C.U...G...UC..U...G......U..U.....CG.U...G....A....C..GG.U...G...A...-.C.G...U..gG.....U...U...G.A...U...G.G...U...G...G...U....G..CGA................................UUG.UC..GC.GA.A..GU.G.GGA..UC.CGCACAC...CC...AUCCGAU.U.AU..UGCUG
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   NZ_CP081860.1     AAUCG...A...UG...AGC...................ACGGUCGUGA...GAAA...GAGCGUUAUAA......................................AGUUC..C.UUACGGU.G...C...A...G......U...A...U.U...A...AC..U...GuacaagA..U.....GG.U...G....C....U..GA.C...G...U...-.U.A...A...-.....-...A...G.G...U...A.A...C...G...A...-....-..-UA................................UCG.UU..GC.UA.C..UU.G.GGA..UC.CGCAUAG...CC...ACCCAAU.C.AU..CAUUG
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   NZ_CP084521.1     GAUCG...A...CG...AAU...................UCGGUCGUAC...CAAG...GAAAGCUACAA......................................AGUGC..C.UUACGGU.G...C...C...A......C...G...C.U...G...GC..C...A......A..G.....GG.U...G....A....C..AG.U...G...C...C.G.A...G...G.....U...G...A.A...C...G.G...C...G...G...U....G..AGA................................CAG.UG..GC.UA.A..CU.G.GGA..UC.CGCAUAC...CA...UGCCGGU.U.AU..CACUG
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   NZ_CP086111.1     GGUAG...A...CG...ACC...................AGGGCCGCGA...GAAG...GCGCGUCACCG......................................UAUUC..C.CUACGGU.G...CcaaG...C......U...G...C.U...G...GC..G...G......C..C.....GA.G...G....A....-..GG.A...G...A...A.G.G...U...C.....G...A...G.C...G...C.G...-...G...C...C....G..CAA................................GC-.UG..GC.CG.A..GU.G.GGA..CC.CGUACAC...CC...UGCCGAU.C.AU..CACCG
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   NZ_LN999832.1     AGUUG...A...UG...AAU...................UCGGUCGUAC...UAAA...GAAAGCUAUAA......................................AGUAC..C.UUAUGGU.G...C...U...A......U...A...A.U...G...GA..C...A......A..A.....GG.U...G....A....U..AG.C...G...A...A.A.A...A...G.....U...U...A.U...G...A.G...U...G...G...A....G..AAA................................UUG.UU..GC.UA.A..AU.G.GGA..UC.CGCAUAC...UA...UGCCAGU.U.AU..UGCUG
   NZ_LN999833.1     GAUUG...A...CG...AAU...................UCGGCCGUAC...UAAG...GAAACGUAUAA......................................AGUGC..C.UUAUGGC.G...C...C...G......U...G...A.U...G...GC..C...A......A..A.....GG.U...G....A....U..AA.U...G...C...G.G.A...G...A.....U...U...A.U...G...G.G...C...G...G...A....G..AAA................................CUG.UU..GC.CA.A..CU.G.GGA..UC.CGCAUAC...CA...UGCCGGU.U.AU..UACCG
   NZ_LN999835.1     UGUCG...A...UG...AAU...................UUAGCCGUAC...UAAG...GAAAGCUAUAG......................................GGUGC..C.CUACGGG.G...C...C...A......U...C...A.U...G...GA..C...A......A..A.....GG.U...G....A....C..GG.U...G...C...G.G.A...G...A.....C...C...A.U...A...G.G...A...G...G...G....G..AAA................................UAG.UU..GC.CA.A..CU.G.GGA..UC.CACACAC...CA...UGCCGGU.U.AU..UACCG
   NZ_LR025108.1     GGUAG...A...UG...AAU...................UUGGUAGAAC...UAAA...GAAAAUUAUAA......................................AGUUC..C.UUAUGGA.G...C...G...C......A...C...C.U...U...AA..U...A......A..G.....GG.U...G....A....U..GG.U...G...A...U.G.G...A...G.....U...U...A.A...U...G.G...U...G...G...U....G..AAA................................CGG.UU..GC.UA.A..CU.G.GGA..UC.CACAUAC...AA...UGCCGGU.U.AU..CAGUG
   NZ_LR134167.1     UAUUG...A...CG...CAU...................UUGGUCGUAC...CAAA...GAGCAUUAUAA......................................AGUGC..C.UUACGGU.G...C...A...G......U...G...U.U...A..aAC..A...A......AgcA.....GA.U...G....G....C..GA.U...G...A...A.G.U...G...A.....A...C...G.C...A...G.G...C...G...A...-....-..-AA................................UCG.UA..GC.GA.A..CU.G.GGA..UC.CACAUAC...AA...UGCCAGU.G.GU..UUCUG
   NZ_LR134327.1     -AUUG...U...GG...A--ua............ccu..UCGGUCGUAC...CAAA...GAACACUAUAA......................................AGUGC..C.UUACGGU.G...C...G...A......U...C...U.U...A...AA..C...A......A..A.....GG.C...G....A....U..CA.G...C...A...A.G.A...U...G.....U...G...A.A...U...G.C...C...G...G...C....G..AAA................................CUA.UC..GC.UA.A..CU.G.GGA..UC.CGCAUAC...CA...UGCCGGU.U.AU..CUCUG
   NZ_LR134376.1     GG---...A...CG...AGA...................UGGGCCGUAC...CAAG...GAAAGCCACAA......................................GCUGC..C.UUACGGU.U...C...C...G......U...C...C.U...G...G-..-...-......-..A.....AG.U...G....A....A.aGA.U...G...G...C.C.A...G...G.....C...C...G.UgagU...G.C...C...G...G...U....G..ACA................................CCG.UC..GC.CA.A..CU.G.GGA..UC.CGCACAC...CC...ACCCGAU.C.AU..CACUG
   NZ_LR134485.1     GAUCG...A...CG...AAU...................UCGGCCGUAC...CAAA...GAAAGCUAUAA......................................AGUGC..C.UUACGGC.U...C...C...G......U...U...A.U...G...GC..G...A......A..A.....GG.U...G....A....U..GG.C...G...A...A.C.A...G...G.....U...U...G.C...U...G.G...C...G...G...C....G..AGA................................CCG.UA..GC.AA.A..CU.G.GGA..UC.CGCACAC...CA...UGCCGGU.U.AU..CACCG
   NZ_LR134494.1     GAUCG...A...CG...AAU...................UCGGCCGUAC...UAAA...GAACGCUACAA......................................AGUGC..C.UUACGGU.U...C...C...G......U...G...A.U...G...GG..C...A......A..A.....GG.C...G....A....C..GG.U...A...U..gG.A.A...G...U.....U...A...A.C...-...G.G...C...G...G...C....G..AAA................................CCG.UU..GC.UA.A..CU.G.GGA..UC.CGCACAC...CA...UGCCAGU.U.AU..UACCG
   NZ_LR134510.1     AGUUG...A...UA...CUU...................UUGGUCGUAC...AAAA...GAACACUAUAA......................................ACUUC..C.AUACGGU.G...C...U...A......U...C...U.U...A...AG..U...A......A..A.....GG.U...G....A....C..GC.U...G...C...G.G.A...A...G.....U...U...G.A...A...G.C...A...G...G...U....G..AAA................................UCG.UA..GC.AA.A..CU.G.GGA..UC.CGCAUAC...AA...UGCCGGU.U.AU..CUCUG
   NZ_LR134515.1     UAUCG...A...CA...CAU...................UCGGUCGUAC...CAAA...GAAAACUAUAA......................................AGUAC..C.UUACGGU.G...C...A...G......U...G...C.U...U...UC..U...A......A..A.....AA.C...G....A....C..GG.U...G...C...A.G.A...A...G.....U...U...G.C...A...G.U...A...G...G...U....G..AAG................................UCG.UU..GC.GA.A..CU.G.GGA..UC.CGCAUAC...AA...UGCCGGU.C.AU..CUCAG
   NZ_LR134531.1     GAUCG...A...UG...AGU...................UCGGUCGUAC...UAAA...GAGAGCUAUAA......................................AGUAC..C.UUACGGU.G...C...G...G......U...U...A.U...G...GC..G...A......A..A.....GG.C...G....A....U..GG.C...G...U...U.G.G...C...G.....U...U...A.C...C...G.G...U...G...G...C....G..AAA................................CUG.UC..GC.UA.A..CU.G.GGA..UC.CGCAUAC...CA...UGCCAGU.U.AU..CUCUG
   NZ_LR215729.2     GGCUG...A...CG...AGU...................UCGGUCGUGA...GCGU...GAGCGUUACAA......................................GCUGC..C.UUACGGU.G...C...U...Gu...gaU...C...U.C...G...GU..U...A......A..G.....GA.A...G....G....U..GA.C...A...A...A.G.U...U...G.....A...U...C.C...G...G.G...C...G...C...C....-..--A................................UCG.UC..GC.CA.A..GU.G.GGA..UC.CGCACAC...UC...ACCCAAU.C.GU..UACCG
   NZ_LR217713.1     AAUUG...A...CA...UCU...................UUGGGCGAAC...CAAA...GAAAGCUAUAA......................................AAUUC..C.UUAUGGC.G...C...U...A......C...U...A.U...G...AU..U...A......A..G.....GG.U...G....C....C..GG.A...G...A...A.A.A...C...G.....U...C...A.C...-...U.G...C...A...G..gA....G..AAA................................UAG.UA..GC.CA.A..CU.G.GGA..UC.CGCACAC...CA...UGCCGGU.A.AU..CACCG
   NZ_LR699007.1     GAUCG...A...CG...AAU...................UCGGCCGUAC...CAAA...GAGAGCUACAA......................................AGUAC..C.UUACGGU.G...C...C...C......A...G...C.U...C...UC..C...A......A..A.....GG.U...G....A....C..GG.U...G...A...AgC.C...G...U.....C...A...A.C...-...G.G...C...G...G...U....G..AAA................................CUG.UC..GC.UA.A..CU.G.GGA..UC.CGCAUAC...CA...UGCCGGU.U.GU..CAGUG
   NZ_LR699553.1     CACCG...A...CG...ACC...................ACGGUCGCGA...GCGC...GAACGUCACAA......................................GGUGC..C.GUACGGC.G...C...G...A......C...G...C.U...G...UU..G...C......A..A.....CU.G...G....A....C..GG.C...G...C...G.C.A...G...A.....U...C...A.A...G...G.C...C...G...Gc.aC....G..CAA................................CUG.GC..--.GA.C..GU.G.GGA..UC.CGAUGAC...GC...GUCCGAU.C.AU..CACCG
   NZ_LR884459.1     --CUG...A...UG...AUU...................UAGGUCGUGA...GCGU...GAGCGCUAUAA......................................AGUAC..C.UUACGGU.U...C...UagcG......U...C...U.U...G...GU..U...A......A..A.....GA.C...G....A....U..GA.G...A...A...A.-.-...-...G.....U...C...G.A...A...G.G...U...G...G...U....C..AAA................................CUA.UC..GC.UA.A..AU.G.GGA..UC.CGCAUAC...GC...AUCCAAU.C.AU..CACUG
   NZ_LR890047.1     AAUAG...A...UA...AAU...................UUGGCCGCAC...UAAA...GAAAGUUAUAA......................................AAUUC..C.CUACGGA.U...C...U...G......U...U...A.U...G...GC..U...A......A..A.....GG.C...A....A....U..GG.A...G...C...A.G.A...A...G.....U...U...G.A...U...G.C...U...G...G...A....G..AUA................................UCG.UA..GC.UA.A..CU.G.GGA..CC.CGCAUAC...UA...UGCCCGU.U.GU..CUCAG
   NZ_LS483250.1     GAUUA...U...UGaugAAA...................AUGGUCGUAC...UAAA...GAAAGCCAUAA......................................AUUAC..C.UUACGGU.U...C...U...G.....uU...G...U.U...G...AA..U...A......U..A.....-A.A...G....A....C..GG.C...G...-...-.C.A...Gc.uG.....U...U...G.U...A...U.C...U...G...G...U....G..ACA................................UUA.UU..GC.UA.A..CU.G.GGA..CC.CGCAUAC...UC...ACCCAAU.C.AU..CACCG
   NZ_LS483422.1     GAUUG...A...CG...AAU...................UCGGUCGUAC...GAAA...GAAAGCUAUAA......................................AGUAC..C.UUACGGU.G...C...G...C......A...C...C.U...A...AC..U...A......A..A.....GG.U...G....A....U..GG.C...G...C..gG.C.A...G...U.....U...A...A.U...-...G.G...C...G...G...C....G..AAA................................CCG.UU..GC.UA.A..CU.G.GGA..UC.CGCAUAC...AA...UGCCAGU.U.GU..CAGUG
   NZ_LS483429.1     UACUG...A...UG...CAU...................UUGGUCGUAC...UAAA...GAACAUUAUAA......................................AGUGC..C.UUAUGGU.G...C...G...G......U...A...U.U...A..aGC..A...-......A..A.....GG.U...A....A....C..GG.U...C...A...A.G.A...A...G.....U...C...A.C...U...G.C...A...G...G...C....G..AAA................................CUA.UC..GC.AA.A..UU.G.GGA..UC.CACAUAC...CA...UGCCAGU.U.GU..CUCUG
   NZ_LS483443.1     -----...-...UU...A--accguugu.ggauaccu..UCGGUCGUAC...CAAA...GAGCACUAUAA......................................AGUGC..C.UUACGGU.G...C...U...A......U...U...U.U...G...AA..C...A......A..A.....GG.C...G....A....U..CA.G...C...A...A.G.A...G...G.....U...G...A.A...U...G.C...C...G...G...U....G..AAA................................CCA.UU..GC.GA.A..CU.G.GGA..UC.CGCAUAC...UA...UGCCGGU.U.AU..CUCUG
   NZ_LS483458.1     UACCG...A...UG...CAU...................UUGGUCGUAC...UAAA...GAACACUAUAA......................................AGUGC..C.UUACGGU.G...C...G...G......U...G...U.U...A..aGC..A...-......A..A.....GG.U...G....A....C..GG.G...-...-...-.C.A...G...G.....A...U...G.UaacA...G.C...A...G...G...C....G..AAA................................CUA.UC..GC.AA.A..UU.G.GGA..UC.CACAUAC...AA...UGCCAGU.U.GU..AUCUG
   NZ_LS483470.1     GAUCG...A...CG...AGU...................UCGGUCGUAC...CAAG...GAAAGCUAUAA......................................AGUGC..C.UUACGGC.G...C...A...A......C...G...C.U...U...GC..C...A......A..G.....GG.C...G....A....C..GG.U...G...C...C.A.A...C...G.....U...C...A.C...U...G.G...C...G...G...U....G..AAA................................UGG.UC..GC.UA.A..CU.G.GGA..UC.CGCAUAC...CA...UGCCGGU.U.GU..CUCAG
   NZ_LS999205.1     CGCUG...A...UG...ACU...................UCGGUCGUGA...GCGC...GAGCGUUACAA......................................GCUGC..C.GUACGGU.G...CuguG...A......U...U...U.C...G...GU..U...A......A..A.....GA.A...G....G....U..GA.C...A...A...G.G.U...C...G.....A...C...G.C...U...G.G...C...G...-...-....-..CUA................................UCG.UG..GC.CA.A..GU.G.GGA..UC.CGCACAC...UC...ACCCGAU.C.GU..UACCG
   NZ_LT594522.1     AAUUG...A...UA...AAU...................UUGGUAGAAC...UAAA...GAAAUAUAUAA......................................AGUUC..C.UUAUGGA.G...C...U...G......U...A...A.U...G...GA..U...-......A..A.....AG.U...A....A....-..-A.U...U...U...A.U.C...A...G.....A...A...G.U...UaaaA.G...U...G...G...U....G..AAA................................UAG.UU..GC.UA.A..UU.G.GGA..UC.CGCAUAC...UA...UGCCUAU.U.AU..UGCUG
   NZ_LT615367.1     GAUCG...A...CG...AAU...................UCGGUCGUAC...CAAA...GAAAGCUAUAA......................................AGUGC..C.UUACGGU.G...C...G...G......U...G...A.U...G...GC..G...A......A..A.....GG.U...A....A....C..GG.U...G...A...C.G.A...U...G.....U...C...G.C...G...G.G...C...G...G...U....G..AAA................................CUG.UC..GC.GA.A..CU.G.GGA..UC.CGCAUAC...CA...UGCCGGU.U.AU..CACCG
   NZ_LT855380.1     CGCCG...A...UG...ACU...................UCGGUCGUGA...GCGU...GAGCGUUACAA......................................GCUGC..C.AUACGGU.G...C...A...G......U...-...-.-...-...GA..U...U......U..C.....GG.U...G....A....A..GG.A...G...G...G.CgA...C...A.....A...G...G.U...C...G.A...C...G...C...-....-..---uggc......................ucua..UCG.UU..GC.CA.A..GU.G.GGA..UC.CGCACAC...UC...ACCCAAU.C.GU..CACCG
   NZ_LT897836.1     UAUUG...A...CG...AAU...................UCGGCCGUAC...CAAA...GAAAGCUAUAA......................................AGUGC..C.UUAUGGA.U...C...C...G......U...U...A.U...G...GC..A...A......G..A.....GG.C...G....A....U..GG.C...G...C...G.G.A...A...A.....U...A...C.U...A...G.G...G...G...G...C....G..AAA................................UUG.UU..GC.UA.A..UU.G.GGA..UC.CGCAUAC...UA...UGCCAAU.U.AU..CACUG
   NZ_LT906448.1     UAUUG...A...UG...CAU...................UCGGUCGUAC...UAAA...GAACACUAUAA......................................AGUGC..C.UUACGGU.G...C...A...G......U...C...U.U..aA...GC..A...-......A..A.....GC.U...G....A....U..GG.U...C...A...A.G.A...U...G.....U...U...A.C...G...G.C...A...G...G...U....G..AGA................................CCG.UU..GC.AA.A..CU.G.GGA..UC.CACAUAC...AA...UGCCAGU.U.GU..AUCUG
   NZ_LT906463.1     UACUG...A...UG...CGU...................UUGGUCGUAC...GAAA...GAACACUAUAA......................................AGUGC..C.UUAUGGU.A...C...G...G......U...G...U.U...A...AA..U...A......A..A.....GC.U...G....A....C..GG.U...C...A...A.G.A...A...G.....U...G...G.C...-...A.G...C...A...G..gU....G..AAA................................CUG.UU..GC.AA.A..CU.G.GGA..UC.CACAUAC...CA...UGCCGGU.A.GU..CUCUG
   NZ_LT906479.1     GAUCG...A...CG...AAU...................UCGGCCGUAC...CAAA...GAAAGCUACAA......................................AGUGC..C.UUACGGC.G...C...C...G......U...G...A.U...G...GG..C...A......A..A.....GG.U...G....A....C..GG.U...G...C..gG.A.A...G...U.....U...A...A.C...-...G.G...C...G...G...C....G..AAA................................CCG.UG..GC.UA.A..CU.G.GGA..UC.CGCACAC...CA...UGCCGGU.C.AU..CACCG
   NZ_OU594967.1     --UUG...A...UG...AAA...................UGGGGCGUAC...UAAA...GAAAGUCAUAA......................................ACUGA..C.UUACGGUaG...U...A...U......C...C...U.U...Ga.aGC..G...C......A..A.....GA.U...G....G....C..GG.A...G...A...A.G.U...G...A.....A...A...G.C...G...G.G...C...G...A...U....-..--A................................UCG.UU..GC.CA.A..CU.G.GGA..CC.CACAUAC...UC...ACCCAAU.U.AU..CACCG
   NZ_OU907312.1     ACUCG...A...UA...GCC...................UGGGGCGUAC...UAAA...GAGAAGCAUAA......................................AAUUC..C.UUAUGGU.G...C...C...G......U...C...A.U...G...AC..C...C......A..U.....CA.G...G....A....U..GG.U...C...A...C.G.A...A...G.....U...A...G.A...A...G.C...U...G...G...U....G..AGA................................UUG.UC..GC.CA.A..UU.G.GGA..UC.CGCACAC...CA...UGCCGGU.G.AU..CUCUG


   Structure         (((((...(..............................)))))).........((...(...(((..........................................)))....).)).((((.(......................(...(.(...(...((..(....................(.(...(............((...............(.(...(.............(...(.(.......(.(...(...(...(..............................................))).))..)).).....)).)......)).)))............))))))).......)))))


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thrU-tyrU-glyT-thrT-tufB-secE-rplK-rplA-rplJ-rplL-rpoB-rpoC-nusG



Position: 12938-13037, Conformation: #0







97% 90% 75% 50% Nucleotide present N N N Nucleotide identify E < 0.1 Base-pair covariation E < 0.05 Helix-level covariation 97% 90% 75%

R Y Y G A Y G A G G Y C G Y R R G A R R Y Y A Y A A R U C C U A C G G Y R C R Y Y U R R R R G A G R Y G R R Y R R Y G R R Y R U G C A A Y U G G G A Y C C R C A Y A C C C R R U Y R U Y R C Y G 5'