thrU-tyrU-glyT-thrT-tufB-secE-rplK-rplA-rplJ-rplL-rpoB-rpoC-nusG



Position: 12018-12167, Conformation: #1







DMS reactivity > 1.0 0.0 0.4 0.7 G/U/No data
Position: 0 (position.label in template: 0.5')5' Position: 1 (position.label in template: 1.A) Reactivity: nanA Position: 2 (position.label in template: 2.C) Reactivity: nanC Position: 3 (position.label in template: 3.G) Reactivity: nanG Position: 4 (position.label in template: 4.C) Reactivity: nanC Position: 5 (position.label in template: 5.U) Reactivity: nanU Position: 6 (position.label in template: 6.A) Reactivity: nanA Position: 7 (position.label in template: 7.C) Reactivity: nanC Position: 8 (position.label in template: 8.A) Reactivity: nanA Position: 9 (position.label in template: 9.A) Reactivity: nanA Position: 10 (position.label in template: 10.C) Reactivity: nanC Position: 11 (position.label in template: 11.A) Reactivity: nanA Position: 12 (position.label in template: 12.A) Reactivity: nanA Position: 13 (position.label in template: 13.A) Reactivity: nanA Position: 14 (position.label in template: 14.G) Reactivity: nanG Position: 15 (position.label in template: 15.U) Reactivity: nanU Position: 16 (position.label in template: 16.U) Reactivity: nanU Position: 17 (position.label in template: 17.A) Reactivity: nanA Position: 18 (position.label in template: 18.U) Reactivity: nanU Position: 19 (position.label in template: 19.C) Reactivity: nanC Position: 20 (position.label in template: 20.G) Reactivity: nanG Position: 21 (position.label in template: 21.A) Reactivity: nanA Position: 22 (position.label in template: 22.U) Reactivity: nanU Position: 23 (position.label in template: 23.A) Reactivity: nanA Position: 24 (position.label in template: 24.U) Reactivity: nanU Position: 25 (position.label in template: 25.C) Reactivity: nanC Position: 26 (position.label in template: 26.U) Reactivity: nanU Position: 27 (position.label in template: 27.G) Reactivity: nanG Position: 28 (position.label in template: 28.G) Reactivity: nanG Position: 29 (position.label in template: 29.G) Reactivity: nanG Position: 30 (position.label in template: 30.C) Reactivity: nanC Position: 31 (position.label in template: 31.U) Reactivity: nanU Position: 32 (position.label in template: 32.G) Reactivity: nanG Position: 33 (position.label in template: 33.C) Reactivity: nanC Position: 34 (position.label in template: 34.G) Reactivity: nanG Position: 35 (position.label in template: 35.G) Reactivity: nanG Position: 36 (position.label in template: 36.C) Reactivity: 0.5C Position: 37 (position.label in template: 37.G) Reactivity: nanG Position: 38 (position.label in template: 38.A) Reactivity: 0A Position: 39 (position.label in template: 39.A) Reactivity: 0A Position: 40 (position.label in template: 40.C) Reactivity: 0C Position: 41 (position.label in template: 41.G) Reactivity: nanG Position: 42 (position.label in template: 42.A) Reactivity: 0A Position: 43 (position.label in template: 43.U) Reactivity: nanU Position: 44 (position.label in template: 44.C) Reactivity: 0C Position: 45 (position.label in template: 45.G) Reactivity: nanG Position: 46 (position.label in template: 46.U) Reactivity: nanU Position: 47 (position.label in template: 47.G) Reactivity: nanG Position: 48 (position.label in template: 48.U) Reactivity: nanU Position: 49 (position.label in template: 49.A) Reactivity: 0A Position: 50 (position.label in template: 50.U) Reactivity: nanU Position: 51 (position.label in template: 51.C) Reactivity: 0C Position: 52 (position.label in template: 52.C) Reactivity: 0C Position: 53 (position.label in template: 53.A) Reactivity: 0.5A Position: 54 (position.label in template: 54.A) Reactivity: 0.5A Position: 55 (position.label in template: 55.A) Reactivity: 0.5A Position: 56 (position.label in template: 56.G) Reactivity: nanG Position: 57 (position.label in template: 57.C) Reactivity: 0C Position: 58 (position.label in template: 58.G) Reactivity: nanG Position: 59 (position.label in template: 59.A) Reactivity: 1A Position: 60 (position.label in template: 60.U) Reactivity: nanU Position: 61 (position.label in template: 61.G) Reactivity: nanG Position: 62 (position.label in template: 62.A) Reactivity: 0A Position: 63 (position.label in template: 63.U) Reactivity: nanU Position: 64 (position.label in template: 64.G) Reactivity: nanG Position: 65 (position.label in template: 65.G) Reactivity: nanG Position: 66 (position.label in template: 66.A) Reactivity: 0A Position: 67 (position.label in template: 67.U) Reactivity: nanU Position: 68 (position.label in template: 68.A) Reactivity: 0A Position: 69 (position.label in template: 69.A) Reactivity: 0A Position: 70 (position.label in template: 70.C) Reactivity: 0C Position: 71 (position.label in template: 71.C) Reactivity: 0C Position: 72 (position.label in template: 72.U) Reactivity: nanU Position: 73 (position.label in template: 73.G) Reactivity: nanG Position: 74 (position.label in template: 74.C) Reactivity: 0C Position: 75 (position.label in template: 75.A) Reactivity: 1A Position: 76 (position.label in template: 76.A) Reactivity: 1A Position: 77 (position.label in template: 77.A) Reactivity: 1A Position: 78 (position.label in template: 78.C) Reactivity: 0C Position: 79 (position.label in template: 79.U) Reactivity: nanU Position: 80 (position.label in template: 80.G) Reactivity: nanG Position: 81 (position.label in template: 81.A) Reactivity: 1A Position: 82 (position.label in template: 82.A) Reactivity: 0.5A Position: 83 (position.label in template: 83.A) Reactivity: 0A Position: 84 (position.label in template: 84.C) Reactivity: 0C Position: 85 (position.label in template: 85.C) Reactivity: 0C Position: 86 (position.label in template: 86.G) Reactivity: nanG Position: 87 (position.label in template: 87.U) Reactivity: nanU Position: 88 (position.label in template: 88.G) Reactivity: nanG Position: 89 (position.label in template: 89.A) Reactivity: 0.5A Position: 90 (position.label in template: 90.U) Reactivity: nanU Position: 91 (position.label in template: 91.U) Reactivity: nanU Position: 92 (position.label in template: 92.A) Reactivity: 0.5A Position: 93 (position.label in template: 93.A) Reactivity: 1A Position: 94 (position.label in template: 94.C) Reactivity: 1C Position: 95 (position.label in template: 95.C) Reactivity: 0.5C Position: 96 (position.label in template: 96.G) Reactivity: nanG Position: 97 (position.label in template: 97.U) Reactivity: nanU Position: 98 (position.label in template: 98.G) Reactivity: nanG Position: 99 (position.label in template: 99.A) Reactivity: 0A Position: 100 (position.label in template: 100.C) Reactivity: 0C Position: 101 (position.label in template: 101.G) Reactivity: nanG Position: 102 (position.label in template: 102.G) Reactivity: nanG Position: 103 (position.label in template: 103.U) Reactivity: nanU Position: 104 (position.label in template: 104.C) Reactivity: 0C Position: 105 (position.label in template: 105.A) Reactivity: 0A Position: 106 (position.label in template: 106.G) Reactivity: nanG Position: 107 (position.label in template: 107.G) Reactivity: nanG Position: 108 (position.label in template: 108.A) Reactivity: 1A Position: 109 (position.label in template: 109.A) Reactivity: 1A Position: 110 (position.label in template: 110.G) Reactivity: nanG Position: 111 (position.label in template: 111.A) Reactivity: 0A Position: 112 (position.label in template: 112.G) Reactivity: nanG Position: 113 (position.label in template: 113.A) Reactivity: 1A Position: 114 (position.label in template: 114.A) Reactivity: 1A Position: 115 (position.label in template: 115.G) Reactivity: nanG Position: 116 (position.label in template: 116.C) Reactivity: 0C Position: 117 (position.label in template: 117.A) Reactivity: 0A Position: 118 (position.label in template: 118.G) Reactivity: nanG Position: 119 (position.label in template: 119.G) Reactivity: nanG Position: 120 (position.label in template: 120.U) Reactivity: nanU Position: 121 (position.label in template: 121.U) Reactivity: nanU Position: 122 (position.label in template: 122.U) Reactivity: nanU Position: 123 (position.label in template: 123.C) Reactivity: 0C Position: 124 (position.label in template: 124.C) Reactivity: 0C Position: 125 (position.label in template: 125.U) Reactivity: nanU Position: 126 (position.label in template: 126.U) Reactivity: nanU Position: 127 (position.label in template: 127.C) Reactivity: 0C Position: 128 (position.label in template: 128.A) Reactivity: 0A Position: 129 (position.label in template: 129.A) Reactivity: 0.5A Position: 130 (position.label in template: 130.C) Reactivity: 0.5C Position: 131 (position.label in template: 131.A) Reactivity: 1A Position: 132 (position.label in template: 132.G) Reactivity: nanG Position: 133 (position.label in template: 133.C) Reactivity: 0C Position: 134 (position.label in template: 134.A) Reactivity: 0A Position: 135 (position.label in template: 135.U) Reactivity: nanU Position: 136 (position.label in template: 136.C) Reactivity: 0C Position: 137 (position.label in template: 137.U) Reactivity: nanU Position: 138 (position.label in template: 138.A) Reactivity: 0A Position: 139 (position.label in template: 139.C) Reactivity: 0.5C Position: 140 (position.label in template: 140.A) Reactivity: 0.5A Position: 141 (position.label in template: 141.U) Reactivity: nanU Position: 142 (position.label in template: 142.G) Reactivity: nanG Position: 143 (position.label in template: 143.A) Reactivity: 0A Position: 144 (position.label in template: 144.U) Reactivity: nanU Position: 145 (position.label in template: 145.G) Reactivity: nanG Position: 146 (position.label in template: 146.G) Reactivity: nanG Position: 147 (position.label in template: 147.C) Reactivity: 0C Position: 148 (position.label in template: 148.C) Reactivity: 0C Position: 149 (position.label in template: 149.G) Reactivity: nanG Position: 150 (position.label in template: 150.A) Reactivity: 1A Position: 151 (position.label in template: 151.C) Reactivity: 0C Position: 152 (position.label in template: 152.U) Reactivity: nanU Position: 153 (position.label in template: 153.C) Reactivity: 0C Position: 154 (position.label in template: 154.C) Reactivity: 0.5C Position: 155 (position.label in template: 155.G) Reactivity: nanG Position: 156 (position.label in template: 156.G) Reactivity: nanG Position: 157 (position.label in template: 157.U) Reactivity: nanU Position: 158 (position.label in template: 158.G) Reactivity: nanG Position: 159 (position.label in template: 159.C) Reactivity: nanC Position: 160 (position.label in template: 160.G) Reactivity: nanG Position: 161 (position.label in template: 161.C) Reactivity: nanC Position: 162 (position.label in template: 162.G) Reactivity: nanG Position: 163 (position.label in template: 163.U) Reactivity: nanU Position: 164 (position.label in template: 164.G) Reactivity: nanG Position: 165 (position.label in template: 165.G) Reactivity: nanG Position: 166 (position.label in template: 166.U) Reactivity: nanU Position: 167 (position.label in template: 167.U) Reactivity: nanU Position: 168 (position.label in template: 168.C) Reactivity: nanC Position: 169 (position.label in template: 169.U) Reactivity: nanU Position: 170 (position.label in template: 170.G) Reactivity: nanG Position: 171 (position.label in template: 171.C) Reactivity: nanC Position: 172 (position.label in template: 172.G) Reactivity: nanG Position: 173 (position.label in template: 173.G) Reactivity: nanG Position: 174 (position.label in template: 174.C) Reactivity: nanC Position: 175 (position.label in template: 175.A) Reactivity: nanA Position: 176 (position.label in template: 176.C) Reactivity: nanC Position: 177 (position.label in template: 177.A) Reactivity: nanA Position: 178 (position.label in template: 178.G) Reactivity: nanG Position: 179 (position.label in template: 179.A) Reactivity: nanA Position: 180 (position.label in template: 180.U) Reactivity: nanU Position: 181 (position.label in template: 181.U) Reactivity: nanU Position: 182 (position.label in template: 182.C) Reactivity: nanC Position: 183 (position.label in template: 183.G) Reactivity: nanG Position: 184 (position.label in template: 184.U) Reactivity: nanU Position: 185 (position.label in template: 185.C) Reactivity: nanC Position: 186 (position.label in template: 186.A) Reactivity: nanA Position: 187 (position.label in template: 187.G) Reactivity: nanG Position: 188 (position.label in template: 188.C) Reactivity: nanC Position: 189 (position.label in template: 189.U) Reactivity: nanU Position: 190 (position.label in template: 190.U) Reactivity: nanU Position: 191 (position.label in template: 191.3')3' 10 20 30 50 100 150


thrU-tyrU-glyT-thrT-tufB-secE-rplK-rplA-rplJ-rplL-rpoB-rpoC-nusG



Position: 12018-12167, Conformation: #1







Retained alignments:


   NC_002939.5       AGGUUAUCGACAUCUG......G....G.C...G...A...A.A.....G....-C.C...AC..G.G.....A..G.G...aG....A..U..U..G.C...C...A.A......GG...AG....AUGC...U...C...G...A....C..-..-..-....-..-..--..-.-.----.....-...-..-.-.-.-...-.---..--..---aaccucuccaaggacacggucguuucc.....ccggaggggcaggagaucaagauuccg...--...-.....--.-.--....-.-.-..-.-.-.-...-...-...--...-.-.---...--.........UCC.U....UCAACUCC.AUCCACAU.............GAUGGCCGAUUCG....GGUGC.CCGG-..--.G.G...U.U.CG.G..C...Cc..agCAGAU........UCGCCAGCUU
   NC_002977.6       AGGUCGUCGACAUCUG......-....G.U...C...G...C.A....uG....CC.A...AC..G.A.....C..C.A....G....G..U..G..G.C...C...A.A......AG...UG....AUGA...U...G...G...A....-..-..-..-....-..-..--..-.-.----.....-...-..-.-.-.-...-.---..--..---aggacucggcguggacgaggugaccgu....uggaaacggcgagaccaucaagcagaag...--...-.....--.-.--....-.-.-..-.-.-.-...-...-...--...-.-.---...--.........UCG.U....UCAAUUCU.AUCUUCAU.............GAUGGCCGACUCC....GGUGC.CCGCG..GC.U.C...G.G.CG.G..C...G.....CAGAU........CCGCCAGCUG
   NC_003910.7       AAGUAAUCGAUAUUUG......G....U.C...A...U...C.U.....G....CU.A...AC..G.A.....A..A.A....A....G..U..U..U.C...G...A.A......AG...CG....AUGA...U...G...G...A....U..A..A..C....C..U..UU..C.G.AAAG.....A...A..A.U.G.G...U.U--..--..---augaacagag.......................................auggcgaaau...--...-.....--.-.--....-.-.G..G.A.A.G...-...-...-A...A.C.AAG...AU.........UCU.U....UCAACUCA.AUCUUUAU.............GAUGGCUGACUCG....GGUGC.UCGUG..GU.A.G...U.G.CU.G..C...A.....CAGAU........UCGUCAAUUA
   NC_004347.2       AAGUAAUCGACAUCUG......G....G.C...A...A...G.U.....G....CG.A...AC..G.A.....A..A.A....A....G..U..U..U.C...U...A.A......GG...CG....AUGA...U...G...G...A....A..A..A..C....C..U..GU..C.A.ACUG.....A...G..A.C.A.G...U.GAU..UA..ACC..............................................................GU...G.....AU.G.GC....G.U.U..G.A.A.G...A...A...AA...A.C.AAG...CU.........UCG.U....UCAACAGC.AUUUACAU.............GAUGGCCGACUCG....GGCGC.UCGUG..GU.A.G...U.G.CC.G..C...A.....CAGAU........CCGUCAGUUA
   NC_004578.1       AGGUGAUCGACCUUUG......G....U.C...C...A...A.G.....G....CG.A...AC..G.A.....C..G.A....A....G..U..C..U.C...G...A.A......AG...CG....AUGA...U...G...U...C....G..A..A..C....C..U..GU..C.C.AAAG.....A...A..C.G.C.G...U.UAU..CG..ACC..............................................................GU...C.....AC.G.GC....G.U.C..G.A.A.G...U...U...GA...U.C.AGG...AA.........UCC.U....UCAACUCG.AUGUACAU.............GAUGGCUGACUCC....GGGGC.GCGUG..GU.U.C...U.G.CU.G..C...C.....CAGAU........UCGUCAGCUG
   NC_004603.1       AAGUGAUCGAUAUCUG......G....G.C...A...U...C.G.....A....CC.A...AC..G.A.....C..C.G....C....G..U..U..G.C...G...A.A......AG...CA....AUGA...U...G...G...A....A..A..A..C....C..U..UU..C.A.UCUG.....A...A..A.C.G.G...U.AGU..UA..ACC..............................................................GU...G.....AA.G.GU....G.A.A..G.A.G.G...A...A...CA...G.C.AAG...AG.........UCA.U....UCAACAGC.AUCUACAU.............GAUGGCGGACUCG....GGCGC.UCGUG..GU.U.C...U.G.CA.G..C...A.....CAGAU........UCGUCAGCUU
   NC_005027.1       AAGUUCUCGAUGCUUG......G....-.-...-...-...-.-.....A....CC.C...AC..G.C.....U..C.G....C....G..A..A..G.C...C...A.UcacggcAG...AC....AUGA...U...G...U...-....-..-..-..-....-..-..--..-.-.----.....-...-..-.-.-.-...-.---..--..---cggcgauggaaaacgaca.......................uccggcccggcgguuggu...--...-.....--.-.--....-.-.-..-.-.-.-...-...-...--...-.-.---...--.........-AC.A....UCAACCCC.GUUUUCUU.............GAUGUCGCACUCG....GGUGC.ACGGG..GU.G.G...U.A.UU.G..A...G.....CAAAU........UCGUCAGCUC
   NC_005126.1       AGGUUAUCGAUAUCUG......G....G.C...U...G...C.G.....G....CA.A...AC..G.A.....G..C.G....U....G..U..U..G.C...U...A.A......GG...CA....AUGA...U...G...G...A....A..A..A..C....U..U..GU..C.G.ACUG.....A...A..A.C.A.G...U.CAC..UA..AUC..............................................................GU...G.....AU.G.GU....G.A.A..G.A.A.G...A...G...CA...A.C.AAG...UU.........UCC.U....UCAACAGC.AUCUUUAU.............GAUGGCUGACUCC....GGUGC.GCGUG..GU.U.C...U.G.CC.G..C...U.....CAGAU........CCGUCAGUUG
   NC_005966.1       AAGUGGUCGAUAUCUG......G....G.C...-...G...C.G....uA....CC.A...AC..G.A.....C..C.A....A....G..U..U..G.C...A...A.A......AG...CG....AUGA...U...G...G...A....C..A..A..C....U..U..GU..C.U.U---.....-...-..-.-.-.-...-.U--..--..---caccaauguga.....................................aaaacaagcaa...--...-.....--.G.GU....C.A.A..G.A.C.G...A...G...AA...A.C.AAA...AA.........UCG.U....UUAACAGC.AUCUAUAU.............GAUGUCUGACUCG....GGUGC.CCGUG..GU.A.G...U.G.CG.G..C...G.....CAGAU........UCGUCAGUUG
   NC_006300.1       AAGUGAUCGAUAUUUG......G....G.C...G...A...C.G.....G....CA.A...AC..G.A.....A..C.G....C....G..U..U..G.C...U...A.A......AG...CG....AUGA...U...G...G...A....A..A..A..U....C..U..UU..C.U.ACGG.....A...A..G.A.A.G...U.GGU..UA..ACC..............................................................GU...G.....AA.G.GU....A.A.U..C.U.U.G...A...G...AA...A.C.AAU...CU.........UCU.U....UCAACAGC.AUCUUUAU.............GAUGGCGGAUUCC....GGUGC.CCGUG..GU.U.C...C.G.CG.G..C...A.....CAGAU........UCGUCAGUUA
   NC_006512.1       AAGUUAUCGAUAUUUG......G....U.C...A...A...C.C.....G....CU.A...AC..G.A.....G..A.A....A....G..U..C..U.C...G...A.A......AG...CG....AUGA...U...G...G...A....U..A..A..C....U..U..GU..C.G.AAAG.....A...G..A.U.C.G...U.UAA..AA..ACA..............................................................AA...G.....AC.G.GU....G.A.A..G.A.C.G...A...A...GA...G.C.AAG...CA.........UCA.U....UUAACUCA.GUCUUUAU.............GAUGGCGGAUUCA....GGCGC.UCGUG..GU.A.G...C.C.CC.G..C...A.....CAGAU........UCGUCAGUUG
   NC_006513.1       AAGUGGUCGAUAUCUG......G....G.G...U...C...G.C.....G....CC.G...GU..G.A.....C..C.A....G....G..U..C..G.C...G...A.A......GG...CG....AUGA...U...G...G...Ac..cA..A..C..U....C..G..GC..C.A.GG--.....A...A..G.A.C.G...U.CGU..CA..AUC..............................................................GU...C.....AC.G.GC....G.A.C..A.C.C.G...U...G...AA...G.C.AGG...AA.........UCC.U....UCAACUCG.AUCUACAU.............GAUGGCGGACUCG....GGCGC.ACGCG..GU.U.C...G.G.CG.G..C...G.....CAGAU........CCGUCAGCUC
   NC_007204.1       AAGUGGUUGAUAUCUG......-....G.U...C...A...C.G....uA....CC.A...AU..G.A.....C..A.A....A....G..U..C..G.C...C...A.A......AG...CG....AUGA...U...G...G...A....-..-..-..-....-..-..-C..A.A.CUU-.....-...-..-.-.-.-...-.---..--..---agcgacugauaaaauua........................ucaacgcuaagggugaag...--...-.....--.-.--....-.A.-..-.-.A.G...A...A...GA...G.C.AGA...AG.........UCA.U....UUAACUCU.AUCUUUAU.............CAUGUCAGAUUCU....GGUGC.UCGUG..GU.A.G...U.G.CC.G..C...A.....CAGAU........UCGUCAGCUC
   NC_007292.1       AGGUUAUUGAUAUUUG......G....G.C...U...G...C.G.....G....CU.A...AU..G.A.....A..C.G....U....G..U..U..G.C...A...C.A......AG...CA....AUGA...U...G...G...A....U..A..A..U....U..U..AG..C.U.ACUG.....A...G..A.C.U.G...U.GAU..GA..AUC..............................................................GU...A.....AU.G.GA....C.A.A..C.U.A.G...A...A...AA...U.C.AAG...CU.........UCA.U....UUAAUAAU.AUUUUUAU.............GAUGGCAGAUUCU....GGGGC.UCGCG..GA.U.C...A.G.CG.G..C...A.....CAAAU........UCGUCAACUU
   NC_007484.1       AAGUUGUGGACAUUUG......G....U.C...C...C...A.U.....A....CU.A...AU..G.A.....U..C.A....A....G..U..U..G.C...C...A.A......GG...CG....AUGA...U...G...G...A....G..-..-..-....-..-..--..-.-.----.....-...-..-.-.-.-...-.---..--..---cgccuaggaagugaagagguauaugau.....gcaaaaggcaauguugucaagcagcag...--...-.....--.-.--....-.-.-..-.-.-.-...-...-...--...-.-.---...--.........ACU.U....UUAAUUCU.AUCUAUAU.............GAUGGCUGAUUCU....GGAGC.CCGUG..GA.U.C...G.G.CC.G..C...C.....CAAAU........UCGCCAGCUU
   NC_007510.1       ACGUGGUCGACAUCUG......G....U.C...G...G...C.A.....A....CG.U...CG..GaA.....G..C.G....G....U..C..G..G.C...-...A.A......GG...CG....AUGA...U...G...G...A....G..C..A..G....C..U..GU..C.G.ACGG.....A...-..G.C.CgG...U.GAC..GG..ACC..............................................................GC...G.....AC.G.GC....A.A.G..G.A.A.A...C...G...CG...C.C.AGG...AA.........UCG.U....UCAACUCG.AUCUACAU.............GAUGGCCGACUCG....GGCGC.CCGGG..GU.U.C...G.G.CG.G..U...U.....CAGAU........UCGUCAGCUG
   NC_007517.1       AAGUUAUCGACAUCUG......G....G.C...C...A...A.G.....G....CU.A...CG..G.A.....A..G.A....C....A..U..C..G.C...C...A.A......GC...AG....AUGC...U...C...G...A....-..-..-..-....-..-..-C..A.A.CCU-.....-...-..-.-.-.-...-.---..--..---uuccaaggacacgauc...........................cucuccccugacggcc...--...-.....--.-.--....-.A.G..G.A.A.G...U...G...AA...G.A.UUC...CU.........UCC.U....UCAACGCA.AUUCACAU.............GAUGGCCGACUCG....GGCGC.GCGGG..--.-.G...C.U.CU.G..C...Uc..agCAGAU........UCGUCAGCUG
   NC_007645.1       AGGUUAUUGAUAUUUG......G....U.C..aC...G...C.G.....-....CC.A...AC..G.A.....U..A.A....A....G..U..U..U.C...C...A.A......AG...CG....AUGA...U...G...G...A....U.cG..U..C....U..U..GG..A.A.AAG-.....A...A..A.A.G.G...U.CGU..GA..AUA..............................................................AA...G.....AC.G.GU....A.A.A..G.A.A.G...U...C...GA...U.C.AGG...AU.........UCC.U....UUAACUCU.GUUUACAU.............CAUGGCUGACUCU....GGUGC.ACGGG..GG.U.C...U.G.CG.G..C...U.....CAGAU........ACGUCAGUUG
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   NZ_LT906463.1     AAGUGAUCGAUAUUUG......G....G.C...U...G...C.A.....G....CA.A...AU..G.A.....A..C.G....U....G..U..A..G.C...A...A.A......AG...CG....AUGA...U...G...G...A....A..A..A..C....U..U..GU..C.U.CAAG.....A...A..G.A.A.G...U.CAU..CA..AUC..............................................................GU...G.....AA.G.GU....A.A.C..U.C.G.G...A...A...AA...A.C.AAG...CG.........UCU.U....UCAACAGU.AUCUUUAU.............GAUGGCGGAUUCU....GGUGC.GCGGG..GU.U.C...U.G.CA.G..C...A.....CAGAU........UCGUCAGUUA
   NZ_LT906479.1     AAGUGAUCGAUAUCUG......G....G.C...U...G...C.G.....G....CG.A...AC..G.A.....A..C.G....C....G..U..U..G.C...C...A.A......AG...CG....AUGA...U...G...G...A....A..A..A..C....C..U..GU..C.G.GUAG.....A...A..G.A.C.G...U.GGU..UA..ACC..............................................................GU...G.....AC.G.GC....G.A.A..G.U.G.G...A...A...CA...G.C.AAG...UU.........UCC.U....UCAACAGC.AUCUUCAU.............GAUGGCCGACUCC....GGUGC.GCGUG..GU.U.C...C.G.CC.G..C...U.....CAGAU........UCGUCAGCUG
   NZ_LT906482.1     AAGUGGUGGAUAUUUG.....gG....G.C...C...G...U.G.....C....CG.-...GC..G.A.....U..A.A....A....A..U..U..G.C...C...A.A......GG...CG....AUGA...U...G...G...A....C..A..A..C....C..U..UU..-.-.----.....-...-..-.-.-.-...-.---..--..---ccaaacagaaagucau...........................cgaccgcgaaggcaaa...--...-.....--.-.--....-.-.-..G.A.A.G...U...G...GA...U.C.AGG...AG.........UCG.U....UCAACUCG.AUCUACAU.............GAUGGCCGACUCC....GGUGC.GCGUG..GU.U.C...U.G.CC.G..C...U.....CAGAU........UAAACAGCUU
   NZ_LT907975.1     AGGUUGUUGACGUCUG......G....A.C...C...A...A.G.....G....-U.C...AC..C.A.....A..U.G....A....G.aU..C..U.C...C...A.A......UG...AG....AUGA...U...G...C...A....G..G..A..A....G..U..GU..C.U.A---.....-...-..-.-.-.-...-.---..--..---ccgacauccuuaccgauccca.................aaaccgguaagacggaaguca...--...-.....--.-.--....-.-.-..-.-.-.-...-...-...--...-.-.ACU...CC.........AGC.U....UUAACCCG.AUCUACAU.............GAUGGCCACUUCC....GGCGC.UCGUG..GU.A.A...C.C.AG.G..A...U.....CAGAU........GCGCCAGCUU
   NZ_LT907988.1     ACGUCGUGGACAUCUG......G....G.G...C...A...A.G.....G....CU.G...GC..G.A.....U..C.G....C....G..U..C..G.G...C...A.A......GG...CC....AUGA...U...G...G...A....G..C..A..G....C..U..GG..C.C.ACCG.....A...G..C.C.G.G...U.CGU..GA..ACC..............................................................GC...C.....AC.-.GG....C.GaG..A.A.C.G...U...C...CG...C.C.AGG...AA.........UCG.U....UCAACUCG.AUCUACAU.............GAUGGCCGACUCG....GGCGC.CCGCG..GU.U.C...G.G.CC.G..C...C.....CAGAU........CCGCCAGCUG
   NZ_OU015430.1     AGGUGGUCGACAUCUG......G....U.C...G...C...G.C.....A....CC.A...AC..G.A.....G..C.G....C....G..U..G..G.C...C...A.A......GG...CG....AUGA...U...G...G...A....-..-..-..-....-..-..--..-.-.----.....-...-..-.-.-.-...-.---..--..---cgcgaucggcaccgagacggugaccaa....ugccgagggcaagcaggucgcgcagaag...--...-.....--.-.--....-.-.-..-.-.-.-...-...-...--...-.-.---...--.........UCG.A....UGAACUCG.GUUUACAU.............CAUGGCCGACUCC....GGCGC.GCGUG..GU.U.C...G.C.AG.G..C...G.....CAGAU........CCGCCAGCUG
   NZ_OU015521.1     AAGUAAUUGAUAUCUG......-....G.U...C...A...C.G....aA....CU.A...AU..G.A.....U..C.A....A....G..U..C..G.C...U...A.A......AG...CA....AUGC...U...G...G...G....A..-..-..-....-..-..--..-.-.----.....-...-..-.-.-.-...-.---..--..---aaaaucgcuauggaaaaaguaaa.............agacgcucaaggaaaagaaguga...--...-.....--.-.--....-.-.-..-.-.-.-...-...-...-U...A.C.AAA...GC.........UCU.U....UUAAUUCC.AUCUACAU.............GAUGUCUGAUUCU....GGAGC.GCGUG..GU.U.C...U.G.CA.G..C...G.....CAAAU........CCGUCAGUUA
   NZ_OU594967.1     AAGCGAUCGAUAUCUG......G....G.C...G...A...C.U.....G....CC.A...AC..G.A.....C..A.A....A....C..U..G..U.C...U...A.A......AG...CG....AUGA...U...G...G...C....U..A..A..C....C..U..UU..C.A.ACUG.....A...A..A.C.G.G...U.UAU..UA..ACC..............................................................GU...G.....AU.G.GU....G.A.A..G.A.A.G...A...A...UC...G.C.AGG...AU.........UCG.U....UUAACAGU.AUUUAUAU.............GAUGGCCGAUUCA....GGGGC.GCGUG..GU.A.G...U.G.CC.G..C...U.....CAGAU........CCGUCAGCUC
   NZ_OU907312.1     AGGUGAUUGAUAUCUG......G....G.C...U...G...C.G.....G....CC.A...AU..G.A.....G..C.G....A....G..U..C..G.C...C...A.A......AG...CG....AUGA...U...G...G...A....A..A..A..C....C..U..CU..C.U.ACGG.....A...A..A.U.G.G...U.GCU..GA..AUC..............................................................GU...C.....AU.C.AA....G.A.A..C.U.A.G...A...G...CA...A.C.AGG...CC.........UCG.U....UUAAUAGU.GUCUUUAU.............GAUGGCUGAUUCA....GGUGC.UCGGG..GA.U.C...G.G.CA.C..C...A.....CAGAU........CCGCCAGCUG


   Structure         (((((..(((.(((((...........(.(...(...(...(.(...........(.(...((.............(.(....(....(..(..(..(.(.....................((.....(((.......(...(...(.......(..(..(....(..(..((.......(((............(.(.(.(...(..((.......................................................................)).........)).).))....).).).........................).).)))...)).........)))......)))....(.(((..................))))..)).........))))).)))....)).).)...).).)).)..).........)))))........)))..)))))


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thrU-tyrU-glyT-thrT-tufB-secE-rplK-rplA-rplJ-rplL-rpoB-rpoC-nusG



Position: 12018-12167, Conformation: #1







97% 90% 75% 50% Nucleotide present N N N Nucleotide identify E < 0.1 Base-pair covariation E < 0.05 Helix-level covariation 97% 90% 75%

A R G U R U Y G A Y A U Y U G G Y R C R R Y G A R G U C A A R G C R A U G A U G G A A R R U C U U Y A A C A U Y U Y A U G A U G G C Y G A Y U C G G Y G C C G G G U G C G C C A G A U Y C G Y C A G Y U 5'