thiI



Position: 1215-1294, Conformation: #0







DMS reactivity > 1.0 0.0 0.4 0.7 G/U/No data
Position: 0 (position.label in template: 0.5')5' Position: 1 (position.label in template: 1.C) Reactivity: nanC Position: 2 (position.label in template: 2.G) Reactivity: nanG Position: 3 (position.label in template: 3.A) Reactivity: nanA Position: 4 (position.label in template: 4.U) Reactivity: nanU Position: 5 (position.label in template: 5.A) Reactivity: nanA Position: 6 (position.label in template: 6.A) Reactivity: nanA Position: 7 (position.label in template: 7.A) Reactivity: nanA Position: 8 (position.label in template: 8.G) Reactivity: nanG Position: 9 (position.label in template: 9.U) Reactivity: nanU Position: 10 (position.label in template: 10.G) Reactivity: nanG Position: 11 (position.label in template: 11.G) Reactivity: nanG Position: 12 (position.label in template: 12.U) Reactivity: nanU Position: 13 (position.label in template: 13.U) Reactivity: nanU Position: 14 (position.label in template: 14.G) Reactivity: nanG Position: 15 (position.label in template: 15.A) Reactivity: nanA Position: 16 (position.label in template: 16.G) Reactivity: nanG Position: 17 (position.label in template: 17.G) Reactivity: nanG Position: 18 (position.label in template: 18.A) Reactivity: nanA Position: 19 (position.label in template: 19.A) Reactivity: nanA Position: 20 (position.label in template: 20.G) Reactivity: nanG Position: 21 (position.label in template: 21.C) Reactivity: nanC Position: 22 (position.label in template: 22.G) Reactivity: nanG Position: 23 (position.label in template: 23.A) Reactivity: nanA Position: 24 (position.label in template: 24.A) Reactivity: nanA Position: 25 (position.label in template: 25.U) Reactivity: nanU Position: 26 (position.label in template: 26.A) Reactivity: nanA Position: 27 (position.label in template: 27.A) Reactivity: nanA Position: 28 (position.label in template: 28.C) Reactivity: nanC Position: 29 (position.label in template: 29.G) Reactivity: nanG Position: 30 (position.label in template: 30.U) Reactivity: nanU Position: 31 (position.label in template: 31.U) Reactivity: nanU Position: 32 (position.label in template: 32.G) Reactivity: nanG Position: 33 (position.label in template: 33.A) Reactivity: 0A Position: 34 (position.label in template: 34.U) Reactivity: nanU Position: 35 (position.label in template: 35.A) Reactivity: 0.5A Position: 36 (position.label in template: 36.U) Reactivity: nanU Position: 37 (position.label in template: 37.C) Reactivity: 0C Position: 38 (position.label in template: 38.C) Reactivity: 0C Position: 39 (position.label in template: 39.G) Reactivity: nanG Position: 40 (position.label in template: 40.C) Reactivity: 0C Position: 41 (position.label in template: 41.G) Reactivity: nanG Position: 42 (position.label in template: 42.A) Reactivity: 0.5A Position: 43 (position.label in template: 43.A) Reactivity: 1A Position: 44 (position.label in template: 44.A) Reactivity: 0.5A Position: 45 (position.label in template: 45.U) Reactivity: nanU Position: 46 (position.label in template: 46.C) Reactivity: 0C Position: 47 (position.label in template: 47.G) Reactivity: nanG Position: 48 (position.label in template: 48.C) Reactivity: 0C Position: 49 (position.label in template: 49.C) Reactivity: 0C Position: 50 (position.label in template: 50.C) Reactivity: 0C Position: 51 (position.label in template: 51.A) Reactivity: 0A Position: 52 (position.label in template: 52.G) Reactivity: nanG Position: 53 (position.label in template: 53.C) Reactivity: 0C Position: 54 (position.label in template: 54.A) Reactivity: 1A Position: 55 (position.label in template: 55.G) Reactivity: nanG Position: 56 (position.label in template: 56.A) Reactivity: 0.5A Position: 57 (position.label in template: 57.C) Reactivity: 0C Position: 58 (position.label in template: 58.C) Reactivity: 0C Position: 59 (position.label in template: 59.G) Reactivity: nanG Position: 60 (position.label in template: 60.A) Reactivity: 1A Position: 61 (position.label in template: 61.G) Reactivity: nanG Position: 62 (position.label in template: 62.C) Reactivity: 0C Position: 63 (position.label in template: 63.A) Reactivity: 1A Position: 64 (position.label in template: 64.G) Reactivity: nanG Position: 65 (position.label in template: 65.G) Reactivity: nanG Position: 66 (position.label in template: 66.A) Reactivity: 0.5A Position: 67 (position.label in template: 67.A) Reactivity: 0.5A Position: 68 (position.label in template: 68.G) Reactivity: nanG Position: 69 (position.label in template: 69.U) Reactivity: nanU Position: 70 (position.label in template: 70.G) Reactivity: nanG Position: 71 (position.label in template: 71.G) Reactivity: nanG Position: 72 (position.label in template: 72.U) Reactivity: nanU Position: 73 (position.label in template: 73.G) Reactivity: nanG Position: 74 (position.label in template: 74.G) Reactivity: nanG Position: 75 (position.label in template: 75.A) Reactivity: 0.5A Position: 76 (position.label in template: 76.A) Reactivity: 0.5A Position: 77 (position.label in template: 77.G) Reactivity: nanG Position: 78 (position.label in template: 78.U) Reactivity: nanU Position: 79 (position.label in template: 79.G) Reactivity: nanG Position: 80 (position.label in template: 80.G) Reactivity: nanG Position: 81 (position.label in template: 81.A) Reactivity: 0A Position: 82 (position.label in template: 82.A) Reactivity: 0.5A Position: 83 (position.label in template: 83.A) Reactivity: 1A Position: 84 (position.label in template: 84.C) Reactivity: 0.5C Position: 85 (position.label in template: 85.C) Reactivity: 0C Position: 86 (position.label in template: 86.G) Reactivity: nanG Position: 87 (position.label in template: 87.U) Reactivity: nanU Position: 88 (position.label in template: 88.C) Reactivity: 0C Position: 89 (position.label in template: 89.A) Reactivity: 0.5A Position: 90 (position.label in template: 90.A) Reactivity: 0.5A Position: 91 (position.label in template: 91.U) Reactivity: nanU Position: 92 (position.label in template: 92.G) Reactivity: nanG Position: 93 (position.label in template: 93.G) Reactivity: nanG Position: 94 (position.label in template: 94.C) Reactivity: nanC Position: 95 (position.label in template: 95.U) Reactivity: nanU Position: 96 (position.label in template: 96.U) Reactivity: nanU Position: 97 (position.label in template: 97.C) Reactivity: nanC Position: 98 (position.label in template: 98.G) Reactivity: nanG Position: 99 (position.label in template: 99.G) Reactivity: nanG Position: 100 (position.label in template: 100.C) Reactivity: nanC Position: 101 (position.label in template: 101.C) Reactivity: nanC Position: 102 (position.label in template: 102.C) Reactivity: nanC Position: 103 (position.label in template: 103.G) Reactivity: nanG Position: 104 (position.label in template: 104.A) Reactivity: nanA Position: 105 (position.label in template: 105.A) Reactivity: nanA Position: 106 (position.label in template: 106.C) Reactivity: nanC Position: 107 (position.label in template: 107.G) Reactivity: nanG Position: 108 (position.label in template: 108.A) Reactivity: nanA Position: 109 (position.label in template: 109.C) Reactivity: nanC Position: 110 (position.label in template: 110.G) Reactivity: nanG Position: 111 (position.label in template: 111.U) Reactivity: nanU Position: 112 (position.label in template: 112.G) Reactivity: nanG Position: 113 (position.label in template: 113.A) Reactivity: nanA Position: 114 (position.label in template: 114.U) Reactivity: nanU Position: 115 (position.label in template: 115.C) Reactivity: nanC Position: 116 (position.label in template: 116.C) Reactivity: nanC Position: 117 (position.label in template: 117.U) Reactivity: nanU Position: 118 (position.label in template: 118.C) Reactivity: nanC Position: 119 (position.label in template: 119.G) Reactivity: nanG Position: 120 (position.label in template: 120.A) Reactivity: nanA Position: 121 (position.label in template: 121.3')3' 10 20 30 50 100


thiI



Position: 1215-1294, Conformation: #0







Retained alignments:


   NC_005126.1       UC.AG.U.GA.AGCU...CAGAA.................UGU.U.GAUA..UUCGUCAGAUCGCAGAACAAAGC.A.GUGA.......GC.AA...GUGGUUG...AA.AUUGAAACAGUG....AC.A.GCG..UUCG...........................C.U.C.CAACG..GAUG..UG..-UUA..UUGG
   NC_006300.1       UA.CA.A.AA.UGCG...CAAUA.................UUU.A.GAUA..UUCGUCAAAUUGCGGAACAAACG.G.AAAA.......GG.AU...GUGGUUA...AA.GUGGAUACCGUU....UC.C.GUG..CUGU...........................C.G.G.CCAAU..GACG..UA..AUUU..UAGA
   NC_008781.1       CC.AG.C.GC.-GCA...AAUAA.................UGCuC.GCUC..UCGGUGA--UGCGCCGGG-CCGU.G.GCCA.......UC.AA...CAGCGCA...AA.GCCGAAAUCGGC....GG.U.GGU..UUCG...........................G.U.C.AGCAC..GUCG..GG..CGCG..UUGG
   NC_009792.1       UU.GA.G.GA.AGCG...AGCAA.................UGU.C.GAUA..UUCGCGAAAUCGCCCAACAGACC.G.GGCA.......GG.AC...GUGGUGG...AA.GUGGAAACCGUC....AG.C.GGC..UUUG...........................G.C.C.CGAAC..GACG..UG..AUUC..UGGA
   NC_010694.1       UU.GA.G.GA.AGCA...ACGAA.................CGU.A.GAUA..UUCGUGAAAUCGCCGAGAAGGCG.C.AAGA.......GG.AA...GUGGCUG...AA.GUCGAGACCGUA....GC.C.UCG..UUUU...........................C.U.C.AUAAU..GACG..UG..AUAC..UGGA
   NC_012691.1       CC.GG.G.CA.ACCA...AGG-G.................UGG.U.GAUA..UUGAAGAAACGGCUCUGCAAACC.A.AUCU.......GG.AA...GCAGCCG...AU.---GAAAUCGCCcgucAA.U.UGC..GUCU...........................G.C.G.CGAUUuaGGUG..GG..UUGA..UCGU
   NC_012880.1       UC.AG.C.GA.AGCG...CGCAA.................UAU.U.GAUA..UUCGUGAGAUUGCGGAGCAGACC.A.GCCA.......GA.AC...GUGGUUG...AA.GUGGAAACCGUC....GG.CgCGC..-UUG...........................G.U.G.CCAGC..GAUG..UA..-CUG..UUGG
   NC_012912.1       UG.GC.A.CA.AGCG...CGUAA.................CAU.C.GAUA..UCCGCGAGAUUGCUGAACAAACC.C.AGCA.......GA.CG...GUAACUG...AA.GUGGAAACCGUC....GA.U.GCC..UU-U...........................G.C.CgCAAGC..GAUA..U-..-UCU..GCUG
   NC_012962.1       UC.AG.U.GA.AGCU...CAGAA.................UAU.U.GAUA..UUCGCCAGAUCGCAGAACAAAGC.A.GUGA.......GC.AA...GUGGUUG...AA.GUUGAGACAGUA....AC.G.GAA..UUCG...........................C.U.C.CAACG..GAU-..GU..AUUG..CUGG
   NC_013961.1       UU.AC.G.GA.GGCA...ACCAA.................CGU.U.GAUA..UUCGUGAAAUCGCCGAGAAGACC.G.AAGA.......GG.AA...GUGGUAG...AA.GUCGAGACCGUU....GC.C.UCG..UUUU...........................C.A.G.ACCAG..GAUG..UG..AUAC..UGGA
   NC_015968.1       UG.GC.G.GA.AGCG...UCCAA.................CAU.C.GAUA..UCCGCGAGAUUGCCCAGCAGACC.C.AGCA.......GG.AA...GUGGUUG...AA.GUUGAAACCGUC....AG.C.GGU..UUUG...........................G.C.G.CCAAC..GAUG..CG..AUUC..UGGA
   NC_017168.1       UG.AG.C.GA.AGCU...AAAAA.................UGU.U.GAUA..UCCGUGAAAUCGCACAGCAAAGC.C.GUGA.......AC.AA...GUCGUUG...AA.GUUGAAACCGUU....GC.U.GAA..UUGG...........................C.C.G.AUACC..GAUG..UG..-UUG..CUAG
   NC_017910.1       UG.GA.A.GA.GGCG...GUGAA.................UGU.C.GAUA..UCCGCGAAAUUGGCAAGCAGACC.A.CAGA.......GA.GC...GUGGUUG...AG.GUCGAGACCGUA....AG.C.GGC..UUUG...........................G.G.C.CGGAU..GACG..UU..AUCC..UCGA
   NC_021870.1       UA.GA.A.GA.AGCG...AACAA.................CGU.C.GAUA..UUCGAGAAAUCGCCCAGCAGACU.C.AGCA.......GG.AA...GUCGUGG...AA.GUGGAAACCGUC....AG.C.GGC..UUUG...........................G.C.C.CCAAU..GACG..UG..AUUC..UCGA
   NZ_AP019007.1     UG.GC.G.GA.AGCG...UCCAA.................CAU.U.GAUA..UUCGCGAGAUUGCCCAGCAGACC.G.AGCA.......GG.AC...GUGGUCG...AA.GUUGAGACCGUC....AG.C.GGU..UUCG...........................G.U.G.CCAAC..GAUG..CG..AUUC..UGGA
   NZ_AP019630.1     UG.GA.G.GA.AGCA...UCCAA.................CAU.C.GACA..UCCGCGAGAUUGCCCAGCAGACC.G.AGCA.......GG.AA...GUCGUUG...AA.GUUGAAACCGUG....AG.C.GGU..UUCG...........................G.C.G.CUAAC..GAUG..CG..AUUC..UGGA
   NZ_AP022508.1     UGgCA.G.AA.-GCG...UCCAA.................CAU.C.GACA..UCCGCGAGAUUGCCCAGCAGACC.G.AGCA.......GG.AA...GUGGUUG...AA.GUGGAAACCGUG....AG.C.GGU..UUCG...........................G.U.G.CGAAC..GAUG..CG..AUUC..UGGA
   NZ_AP022547.1     UG.GC.G.GA.AGCG...AGCAA.................CAU.U.GAUA..UCCGCGAUAUCGCUCAGCAGACC.G.AGCA.......GG.AU...GUAGUGG...AA.GUGGAAACCGUC....AG.C.GGU..UUUG...........................G.C.C.CUGAC..GACG..CG..AUCC..UCGA
   NZ_AP023184.1     UU.GA.A.GA.AGCG...ACCAA.................CAU.C.GACA..UCCGUGAAAUUGCCAAUCAGA--.-.-GCA.......AAgAA...GUGGUAAcggAA.GUUGAAACCGUU....GA.U.GCA..UUUG...........................G.C.C.CGAAU..GACG..UG..CUGC..UGGA
   NZ_AP025465.1     UC.GA.G.AA.CGCU...CGUGU.................UAU.G.GAUA..UCCGUGAUAUUGAGAAAGAGAGC.C.AAGA.......GC.AA...GCUCCAG...AA.GUGGAAC-AGGU....UC.A.AGC..UGUG...........................G.C.UgAGCAC..GCUA..UC..GUUC..UUGA
   NZ_CP007230.1     UG.AG.C.GA.AGCC...AAAAA.................CGU.U.GAUA..UCCGUGAAAUCGCACAGCAAAGC.C.GCGA.......AC.AA...GUCGUUG...AA.GUUGAAACCGUU....GC.U.GAA..UUGG...........................C.C.G.AUACC..GAUG..UG..-UUG..CUAG
   NZ_CP009787.1     UC.AA.C.GA.AGCC...AAAAA.................CGU.U.GAUA..UCCGAGAAAUUGCCGAGCAAAGC.C.GUGA.......GC.AA...GUGGUCG...AA.GUCGAAACCGUU....GC.U.GAA..CUGG...........................C.U.G.AUACC..GACA..UA..UUGC..UAGA
   NZ_CP011104.1     UC.AG.U.GA.AGCU...CAGAA.................UAU.U.GAUA..UCCGUCAGAUCGCAGAACAAAGC.A.GUGA.......GC.GA...GUCGUUG...AA.GUUGAAACAGUC....AC.U.GAA..UUUG...........................C.U.U.CAACA..GAUG..-U..AUUA..CUGG
   NZ_CP011602.1     UG.GA.A.GA.GGCC...UCGAA.................UAU.C.GAUA..UUCGCGAAAUCGCUGCGCAGACC.A.GCGA.......AA.CG...GUUGUGG...AG.GUCGAAACGGUC....AG.C.GGA..UUUG...........................G.U.C.CGAAC..GAUG..UC..AUUC..UCGA
   NZ_CP012257.1     UG.GC.G.GA.AGCC...ACCAA.................UGU.G.GAUA..UCCGUGAAAUCGCCGAGCAGACC.G.AACA.......GC.AG...GUGGUGG...AA.GUGGAAACCGUU....AA.C.GGU..UUCG...........................G.C.C.CGAAC..GACG..CG..AUUC..UGGA
   NZ_CP012264.1     UG.GA.G.GA.AGCC...ACUAA.................CGU.G.GAUA..UCCGUGAAAUCGCCGAGCAGACC.G.AGCA.......GC.AA...GUCGUUG...AG.GUGGAAACCGUG....AA.C.GGU..UUUG...........................G.C.C.CGAAC..GACG..CG..AUCC..UCGA
   NZ_CP012266.1     UG.GC.U.GA.AGCC...ACCAA.................UGU.U.GAUA..UCCGCGAAAUCGCCGAGCAGACC.G.AGCA.......GC.AG...GUGGUGG...AA.GUGGAAACCGUC....AG.C.GGU..UUCG...........................G.C.C.CGAAC..GACG..CG..AUC-..-CUG
   NZ_CP012268.1     UG.GA.G.GA.AGCC...ACGAA.................CGU.C.GACA..UCCGCGAAAUUGCCGAGCAGACC.G.AACA.......GC.AG...GUGGUGG...AA.GUGGAAACUGUC....AG.C.GGU..UUCG...........................G.C.C.CGAAC..GACG..CG..AUUC..UGGA
   NZ_CP012871.1     UG.GC.A.GA.AGCG...ACCAA.................CGU.C.GAUA..UCCGCGAAAUCGCCCAGCAGGCC.G.GGCA.......GG.AG...GUGGUGG...AA.GUGGAAACCGUC....AG.C.GGC..UUCG...........................G.C.G.CCAAC..GACG..UU..AUCC..UUGA
   NZ_CP013990.1     UG.GC.C.GA.AGCC...UCUAA.................CAU.U.GAUA..UCCGCGAAAUCGCCCAGCAGACC.G.AGCA.......GG.AC...GUGGUGG...AA.GUUGAAACCGUA....AA.C.GGU..UUCG...........................G.U.C.CUGAC..GACG..UG..CU--..GCUG
   NZ_CP014007.2     UG.GA.G.GA.AGCC...AGCAA.................UAU.U.GAUA..UCCGCGAAAUCGCUCAGCAAACC.C.AGCA.......AG.AG...GUGGUGG...AA.GUUGAAACGGUU....AA.C.GGU..UUCG...........................G.C.C.CGAAC..GAUG..UG..GUGC..UGGA
   NZ_CP014035.2     GC.GA.G.UU.CGCU...UUUGA.................GUU.G.GAUC..UGCUCAAAAAUUUCCAGCAGAUC.G.AACA.......GA.GA...ACGGAAG...AA.UAGCUGAUGCUG....AA.U.---..AUCG...........................U.C.A.CGAAA..CUGC..-G..ACGC..UUGC
   NZ_CP014070.2     UC.GA.A.GA.AGCC...AGUAA.................UAU.C.GAUA..UUCGCGACAUCGCGCAGCAGACC.C.AGCA.......GG.AC...GUGGUGG...AA.GUUGAAACCGUC....AG.C.GGU..UUUG...........................G.C.C.CGAAC..GACG..UG..AUUC..UGGA
   NZ_CP014136.1     UG.CG.C.GA.GGCG...AAAAA.................CAU.C.GAUA..UCCGCACUAUCG-CCAGCGAAGUuC.AGGA.......AC.AG...GUGACGG...AA.GUCGAGACCGUG....GC.G.GCG..UUCG...........................C.U.G.CCAGC..GAUG..UG..GUUC..UGGA
   NZ_CP015030.1     UG.CA.A.AA.UGCG...AGCUA.................UUU.G.GAUA..UUCGCGAAAUUGCUCAGCAAACG.G.AGAA.......AG.AG...GUUGUUU...CG.GUUGAAAC-GAC....GA.-.---..----cagaauu.............gggcagu-.-.-.--AAU..GAUG..UG..AUUU..UGGA
   NZ_CP015031.1     UA.CA.A.AA.UGCG...CAAUA.................UUU.A.GAUA..UUCGUCAAAUUGCAGAACAAACG.G.AAAA.......GG.AU...GUGGUUA...AA.GUGGAUACCGUU....UC.C.GUG..CUGU...........................C.G.G.CCAAU..GACG..UA..AUUU..UAGA
   NZ_CP015425.1     UC.CA.A.AA.UGCA...ACAUA.................UUU.A.GAUA..UUCGCGAGAUUGCUUUACAGACA.G.AAAA.......AG.AC...GUGGUGG...CG.GUUGAAGC----....--.-.---..----aaccucagcauug.acugaaaaagaca-.-.-.-----..----..UC..AUUU..UAGA
   NZ_CP015581.1     UC.CA.G.GA.AGCC...AGCAA.................UCU.C.GAUA..UUCGUGAAAUUGCUGAGCAGGCA.A.CCCG.......UG.AU...GUCGUGG...AA.GUCGAGACAGUG....GC.A.GCC..UUUG...........................G.C.G.AAAAU..GACA..GC..AUUC..UGGA
   NZ_CP016176.1     UC.AG.U.GA.AGCU...CAGAA.................UGU.G.GAUA..UUCGCCAAAUUGCAGAGCAGACC.A.GCGA.......GC.AG...GUUGUUG...AA.GUGGAAACCGUG....AC.U.GAG..UUUU...........................C.U.U.CUGAU..GAUG..UG..CUGU..UGGA
   NZ_CP016337.1     UU.GC.U.GA.AGCG...AGUAA.................UAU.C.GAUA..UCCGCGAAAUCGCCCAGCAGACC.-.--CA.......GG.AAacgGUGGUCG...AA.GUCGAAACGGUA....AC.C.GGU..UUUG...........................G.C.C.CGAAC..GAUG..UG..AUCC..UGGA
   NZ_CP016948.1     UG.AG.C.GA.GGCC...AAGAA.................CGU.C.GAUA..UUCGCUCUAUCGCCGAGCAG-GC.GcAGGA.......GC.AG...GUGACCG...AG.GUGGAAACCGUC....GC.G.GCC..UUUG...........................G.U.G.CCGAC..GAGG..UG..AUCC..UGGA
   NZ_CP017184.1     UG.GA.A.GA.AGCG...UCCAA.................CAU.U.GAUA..UCCGCGAGAUCGCCCAGCAGACC.G.AGCA.......GG.AA...GUGGUAG...AA.GUGGAGACCGUG....AG.C.GGU..UUCG...........................G.C.G.CGAAC..GACG..CG..AUUC..UGGA
   NZ_CP017279.1     UG.GC.G.GA.AGCG...ACCAA.................CAU.C.GAUA..UCCGCGAGAUUGCCCAGCAGACC.G.AGCA.......GG.AA...GUGGUUG...AA.GUUGAAACCGUC....AG.C.GGU..UUCG...........................G.U.G.CCAAC..GACG..CG..AUUC..UGGA
   NZ_CP017454.1     UG.GC.G.GA.AGCG...CGCAA.................CAU.C.GACA..UCCGUGAGAUUGCCGAGCAGACU.C.AGCA.......GG.AU...GUGGCCG...AA.GUGGAAACGGUC....GG.U.GCG..UUUG...........................C.C.G.CGAGC..GAUA..U-..-UCU..GCUG
   NZ_CP017482.1     UG.AG.U.GA.AGCA...CGGAA.................UAU.U.GAUA..UCCGUGAGAUCGCCGAGCAGACU.A.AGCA.......AG.AU...GUGGUUG...AA.GUCGAAACGGUC....GC.G.UCG..UUUG...........................C.G.C.CAACU..GACG..UG..CUGU..UGGA
   NZ_CP019706.1     UG.CA.G.GA.AGCG...ACCAA.................UGU.U.GAUA..UUCGAACCAUCGCUGAACAGUCA.C.AGGA.......AG.AG...GUGGUGG...AAgUCGAAACCGUUG....CU.U.CUG..UUU-...........................C.A.G.CGAAC..GAAG..CG..CUGC..UGGA
   NZ_CP020388.1     UU.GC.C.GA.GGCG...AACAA.................CAU.U.GAUA..UCCGCGAUAUCGCCCAGCAGACG.C.AGCA.......GG.AU...GUGGUGG...AA.GUUGAGACCGUC....AG.C.GGC..UUUG...........................G.C.G.CCAAC..GACG..CC..GUCC..UCGA
   NZ_CP020405.2     UG.CA.A.AA.UGCA...CAAUA.................UUU.A.GAUA..UUCGUCAGAUUGCCGAACAGACU.G.AAAA.......AG.AA...GUAGUUG...CA.GUAGAUACAGUC....GC.U.GUU..UUGA...........................G.U.G.CGCAA..GAUG..UA..AUUU..UGGA
   NZ_CP023009.1     CC.CG.C.AA.U---...-----c...............u---.G.GAUA..UCCGUGAGAUCGCCGAACAGACC.A.CGCA.......GG.AC...GUGGUGG...AA.GUCGAAACGGUA....GA.U.GCA..UUCG...........................C.C.G.CUAAC..GACA..UC..-UUG..CUGG
   NZ_CP023525.1     UU.GC.G.GA.AGCG...ACCAA.................UAU.C.GAUA..UUCGCGAUAUUGCGACCCAGACC.C.AGCA.......GG.AA...GUGGUGG...AA.GUCGAAACGGUU....AA.A.GCG..UUUG...........................G.G.C.CAAAC..GA--..AG..UGCU..GCUG
   NZ_CP023567.1     UU.GA.G.GA.AGCG...ACUAA.................CGU.U.GAUA..UUCGUGAAAUCGCCGAGAAGACC.G.AAGA.......GG.AA...GUGGUUG...AA.GUGGAGACCGUU....GC.C.UCA..UUU-u.........................cU.G.-.ACAAU..GAUG..UG..AUAC..UGGA
   NZ_CP025003.1     UG.GA.G.GA.AGCG...CGUAA.................CAU.C.GAUA..UCCGCGAUAUUGCCGAACAGACC.C.GGCA.......GG.AU...GUGACCG...AA.GUGGAAACGGUC....GG.C.-GC..CUUU...........................G.CcG.CGAGC..GAUA..UU..CUGC..UGGA
   NZ_CP025799.1     UG.UC.G.CA.GGCG...CGUAA.................CAU.C.GACA..UCCGCGAGAUUGCUGAACAAACC.C.AGCA.......GA.CA...GUAACCG...AA.GUAGAAACCGUC....GA.U.-GC..CUUU...........................G.C.CgCAAGC..GAUA..UU..CUGC..UGGA
   NZ_CP027107.1     UG.GC.G.GA.AGCC...ACCAA.................CGU.G.GAUA..UCCGUGAAAUCGCCGAGCAGACC.G.AACA.......GC.AG...GUGGUGG...AA.GUGGAAACCGUU....AA.C.GGU..UUCG...........................G.C.C.CGAAC..GACG..CG..AUUC..UGGA
   NZ_CP027986.1     UG.GC.G.GA.AGCG...UCCAA.................CAU.U.GAUA..UCCGCGAAAUUGCCCAGCAGACC.G.AACA.......GG.AC...GUGGUUG...AA.GUGGAAACCGUG....AG.C.GGU..UUCG...........................G.U.G.CGAAC..GAUG..CG..AUUC..UGGA
   NZ_CP028271.1     UG.CA.G.GA.AGCG...ACCAA.................CGU.G.GAUA..UUCGCACUAUCGCUGAGCAGACA.C.AGGA.......AG.AU...GUCGCCG...AA.GUGGAAACCGUA....GC.C.UCU..UUUU...........................C.U.G.CUAAC..GAUG..CU..CUGC..UGGA
   NZ_CP029206.1     UA.CA.A.AA.CGCC...CAUUA.................UUU.A.GAUA..UUCGUGAAAUUGCUCAACAAACG.G.AAAA.......AG.AG...GUGGUAU...CC.GUCGAAACCACU....UC.G.GAA..UUAG...........................G.C.G.AAAAC..GAUG..UG..AUUU..UGGA
   NZ_CP031560.1     UU.GA.G.CA.GGUG...-----guggcgcaagcgcgcaaCAU.C.GACA..UCCGUGAGAUUGCCGAGCAGACC.C.AGCA.......GG.AU...GUGGCCG...AA.GUGGAAACGGUC....GG.C.GCG..UUUG...........................C.C.G.CGAGC..GAUA..UC..CUGC..UGGA
   NZ_CP033744.1     UU.GA.A.GA.AGCG...AAUAA.................UAU.U.GAUA..UUCGCGAUAUCGCCCAGCAGACG.C.AGCA.......AA.CC...GUGGUAG...AA.GUGGAAACCGUG....AG.C.GGU..UUCG...........................G.C.C.CGAAC..GAUG..UG..AUCC..UGGA
   NZ_CP033844.1     UA.GC.G.GA.AGCG...ACGAA.................UAU.C.GAUA..UCCGCGAUAUUGCUCAGCAGACA.G.AACA.......GG.AC...GUGGUGG...AG.GUGGAAACCGUC....AG.C.GGC..UUUG...........................G.C.C.CGAAC..GACG..UA..AUCC..UCGA
   NZ_CP034035.1     UC.AG.C.GA.AGCC...CGCAA.................UAU.C.GAUA..UUCGUGAAAUUGCCGAGCAGACC.C.GGCA.......GG.AU...GUGAUUG...AA.GUGGAAACCGUG....GU.G.GCG..UUUG...........................C.G.C.CAACG..GACG..UG..CUAC..UUGA
   NZ_CP034752.1     UU.GA.G.CA.GGCG...GUGAA.................UAU.U.GAUA..UUCGCCAAAUAGCAGAACAGACC.C.AACA.......GC.AA...AUCACUG...AA.GUAGAAA-CGGU....AG.C.CGC.gUUUG...........................G.C.A.GUAAU..GAUG..UG..AUUA..UCGA
   NZ_CP034938.1     U-.GA.G.UG.A---...-A---gccc.........ggaaUAU.U.GAUA..UCCGUGAGAUCGCCGAGCAGACC.A.AACA.......AG.AC...GUGGUUG...AA.GUCGAAACGGUC....GC.G.UCG..UUUG...........................C.G.C.CAACC..GACG..UG..CUGC..UGGA
   NZ_CP036175.1     UG.GC.G.GA.AGCG...AAUAA.................CAU.U.GAUA..UUCGCGAUAUUGCCCAGCAGACC.G.AGCA.......GG.AC...GUGGUGG...AA.GUGGAAACCGUC....AG.C.GGU..UUUG...........................G.C.U.CUAAC..GACG..UU..AUCC..UCGA
   NZ_CP037864.1     UU.GA.A.GA.AGCC...AACAA.................UAU.C.GAUA..UUCGCGAUAUCGCUCAGCAGACG.C.AGCA.......GA.CC...GUGGUGG...AA.GUUGAAACCGUG....AG.C.GGC..UUUG...........................G.C.C.CGAAC..GAUG..UA..AUUC..UGGA
   NZ_CP038469.1     UC.GA.A.GA.AGCG...AACAA.................UAU.C.GAUA..UUCGUGAUAUCGCCCAACAGACG.C.AGCA.......GA.CU...GUGGUGG...AA.GUGGAAACCGUA....AG.U.GGU..UUUG...........................G.C.C.CGAAC..GAUG..UG..AUUC..UGGA
   NZ_CP038662.1     UG.AG.C.GA.AGCG...AAGAA.................CGU.C.GAUA..UUCGCUCCAUCGCCGAGCAG-GC.GcAGGA.......GC.AG...GUGACUG...AA.GUGGAAACCGUU....GC.G.GCC..UUCG...........................G.C.G.CCGAC..GAGG..UG..AUCC..UGGA
   NZ_CP038853.1     UC.GA.A.GA.AGCG...ACCAA.................UGU.C.GAUA..UCCGUACUAUUGCUGAGCAAACG.G.AAGA.......GG.AG...GUGGUGG...AA.GUUGAGACCGUC....GC.G.CUU..CUGA...........................G.U.G.ACAAC..GAUG..UG..GUGC..UGGA
   NZ_CP040392.1     UG.GC.G.GA.AGCC...AGCAA.................UAU.U.GAUA..UCCGUGAAAUCGCUCAGCAAACC.C.AGCA.......AG.AG...GUAGUGG...AA.GUUGAAACGGUU....AA.C.GGU..UUCG...........................G.C.C.CGAAC..GAUG..UG..GUGC..UGGA
   NZ_CP040428.1     UG.GA.A.AC.AGCG...ACCAA.................UAU.G.GAUA..UCCGCGAUAUCGCCGAGCAGGCU.C.AGCA.......GG.AG...GUGGUUG...AA.GUCGAGACCGUU....AC.C.AGC..UUCG...........................G.C.C.CGAAC..GACG..C-..-GGU..ACUG
   NZ_CP041247.1     UG.GC.G.GA.AGCG...AAUAA.................CGU.G.GAUA..UUCGCGAUAUCGCCCAGCAGACU.C.AGCA.......GG.AC...GUGGUGG...AA.GUAGAAACCGUA....AC.C.GGC..UUUA...........................G.C.C.CGAAU..GACG..UC..AUUC..UGGA
   NZ_CP041925.1     UU.GA.G.GA.AGCG...AAUAA.................CAU.C.GACA..UUCGCGAUAUCGCCCAGCAAACA.C.AGCA.......GG.AC...GUGGUAG...AA.GUGGAAACCGUC....AG.C.GGC..UUCA...........................G.C.G.CGAAU..GACG..UG..AUAC..UCGA
   NZ_CP042220.2     UG.GC.G.CA.AGCG...CGCAA.................CAU.C.GAUA..UCCGUGAGAUUGCUGAGCAAACC.C.AGCA.......GA.GC...GUAACCG...AA.GUGGAAACGGUU....GA.U.-GC..CUUU...........................G.C.CgCGAGC..GAUA..UU..CUGC..UGGA
   NZ_CP042382.1     CC.GCcC.GA.GC--...-----caccc......guggca--G.C.GAUA..UCGAGGAAACCGCCCUGCAGACC.A.ACUC.......GG.AA...GCGGCGG...AA.---GAGAUCGCA....--.-.---..----cgccaa..............cugcgcc-.-.-.-----..UGCG..GGauAUCG..GCGG
   NZ_CP043318.1     UG.GC.G.GA.AGCG...UCCAA.................CAU.U.GAUA..UCCGCGAGAUUGCCCAGCAGACC.G.AGCA.......GG.AC...GUGGUUG...AA.GUGGAAACCGUG....AG.C.GGU..UUCG...........................G.C.C.CUAAC..GAUG..CG..AUUC..UGGA
   NZ_CP043342.1     UG.GC.G.GA.AGCG...UCAAA.................CAU.C.GAUA..UCCGCGAGAUUGCCCAGCAGACC.G.AGCA.......GG.AC...GUGGUUG...AA.GUGGAAACCGUC....AG.C.GGU..UUUA...........................G.C.G.CUAAU..GACG..UG..AUUG..UAGA
   NZ_CP043727.1     UC.AG.U.GA.AGCU...AAAAA.................UGU.C.GACA..UCCGUGAAAUCGCCGAGCAAAGU.C.GUGA.......GC.AA...GUGGUUG...AA.GUUGAAACCGUU....GC.-.---..----agaacugg...........cggauagc-.-.-.-----..GAUG..UG..-UUG..UUGG
   NZ_CP044098.1     UU.GA.A.GA.AGCG...AACAA.................UAU.C.GAUA..UUCGCGAUAUCGCCCAGCAGACG.C.AGCA.......GA.CC...GUGGUAG...AA.GUGGAAACCGUG....AG.C.GGU..UUCG...........................G.C.C.CGAAU..GACG..UA..AUCC..UUGA
   NZ_CP044101.1     UC.GA.A.GA.AGCG...AACAA.................UAU.C.GAUA..UUCGCGAUAUCGCCCAGCAGACU.C.AGCA.......GA.CC...GUGGUGG...AA.GUGGAAACCGUG....AG.U.GGU..UUCG...........................G.C.U.CAAAC..GACG..UG..AUUC..UGGA
   NZ_CP045300.1     UG.GC.G.GA.AGCC...AGCAA.................UAU.U.GAUA..UCCGUGAAAUCGCUCAGCAAACC.C.AGCA.......AG.AG...GUGGUGG...AA.GUUGAAACGGUU....AA.C.GGU..UUUA...........................G.C.C.CGAAC..GAUG..UG..GUAC..UGGA
   NZ_CP045720.1     UC.GA.A.GA.AGCG...ACCAA.................CGU.C.GAUA..UCCGCACCAUCGCUGAGCAGACA.G.AAGA.......GG.AG...GUGGUGG...AA.GUUGAGACCGUC....GCcU.UGC..-UGA...........................G.U.G.AGAAC..GAUG..UG..GUGC..UGGA
   NZ_CP045771.1     UU.GA.A.GA.AGCG...AACAA.................UAU.C.GAUA..UUCGUGAUAUCGCCCAGCAGACG.C.AGCA.......GA.CC...GUGGUGG...AA.GUGGAAACCGUG....AG.C.GGC..UUCG...........................G.C.C.CGAAC..GAUG..UG..AUUC..UGGA
   NZ_CP045783.1     UG.GA.A.GA.GGCG...AGCAA.................UAU.C.GACA..UUCGCGAUAUUGCCCAGCAGACG.G.AAGC.......CG.CC...GUGGUUG...AA.GUGGAAACCGUG....AC.C.GGC..UUUG...........................G.C.G.CUAAC..GACG..CG..AUCC..UCGA
   NZ_CP045845.1     UU.AC.C.GA.AGCG...AAUAA.................CGU.C.GAUA..UCCGUGAUAUCGCUCAGCAGACC.G.AGCA.......GG.AA...GUGGUAG...AA.GUUGAAACCGUU....AG.U.GGU..UUC-...........................A.C.UgAGAAC..GACG..UG..AUCC..UGGA
   NZ_CP047495.1     UG.UG.G.UG.AGUG...AA---gccc.........ggaaUAU.U.GAUA..UCCGUGAGAUCGCCGAGCAGACC.A.AGCA.......AG.AC...GUGGUCG...AG.GUCGAAACGGUC....GC.G.UCA..UUUG...........................C.G.C.CAACC..GACG..UG..CUGC..UGGA
   NZ_CP049608.1     UG.GA.A.GC.CGCG...ACUAA.................CGU.G.GAUA..UCCGUGAAAUCGCCAGCCAAACC.G.AGCA.......GG.AA...GUGGUUG...AA.GUGGAAACCGUC....AC.C.GGG..UUUG...........................G.C.C.CGAAU..GACG..CC..AUCC..UGGA
   NZ_CP050316.1     UG.CA.A.AA.UGCA...CAGUA.................UUU.A.GACA..UUCGACAAAUCGCUGAGCAAACC.G.AAAA.......AG.AG...GUAGUGG...AA.GUGGAUACGGUU....UC.C.AUU..UUAG...........................G.C.G.AGAAC..GAUG..--..-UGG..UGCU
   NZ_CP050508.1     UG.GC.G.GA.AGCC...AACAA.................CGU.C.GAUA..UUCGCGAUAUCGCUCAGCAGACU.C.AGCA.......GG.AA...GUGGUGG...AA.GUUGAAACCGUC....AG.C.GGU..UUUG...........................G.C.C.CCAAC..GACG..UG..AUUC..UGGA
   NZ_CP050854.1     UC.AG.C.GA.AGCG...CGUAA.................CAU.C.GAUA..UCCGCGAAAUCGCCGAGCAAGCC.A.GUCA.......GG.AA...GUGGCUG...AG.GUGGAAACUGUG....GC.G.GCG..UUUG...........................C.G.C.CAACG..GAUG..UC..-UUA..CUGG
   NZ_CP051548.1     UU.GC.G.GA.AGCC...UCGAA.................UAU.C.GAUA..UUCGUGAUAUCGCCGCGCAGACC.A.----gcgaaacGG.--...-UCGUUG...AG.GUCGAAACGGUC....AG.C.GGA..UUUG...........................G.C.C.CGAAC..GAUG..UG..AUUC..UCGA
   NZ_CP051652.1     U-.GA.G.UG.A---...-A---gccc.........ggaaUAU.U.GAUA..UCCGUGAGAUCGCCGAGCAGACC.A.AACA.......AG.AC...GUGGUUG...AA.GUCGAAACGGUC....GC.G.UCG..UUUG...........................C.G.C.CAACG..GACG..UG..CUGC..UGGA
   NZ_CP054043.1     UC.AG.C.GA.AGCC...AAAAA.................CGU.C.GAUA..UCCGUGAGAUUGCAGAGCAAAGU.C.GCGA.......GC.AG...GUGGUGG...AA.GUUGAAACCGUA....GC.U.CAG..CUAA...........................C.U.G.AUAGC..GAUA..UA..UUGC..UUGA
   NZ_CP054058.1     UG.GC.G.GA.AGCC...AACAA.................CGU.C.GAUA..UUCGCGAGAUUGCGCAGCAGACU.C.AGCA.......GG.AA...GUGGUUG...AA.GUUGAAACCGUC....AC.U.GAG..UUUG...........................C.C.G.CCACC..GACG..UG..GUGC..UCGA
   NZ_CP055055.1     UU.GA.G.GA.AGCG...AAUAA.................CGU.U.GAUA..UCCGCGAAAUCGCCCAGCAGACC.G.AGCA.......GG.AA...GUGGUGG...AA.GUGGAAACCGUC....AA.U.GGC..UUUG...........................G.C.C.CGAAC..GACG..UG..AUCC..UCGA
   NZ_CP055292.1     UU.GA.A.GA.AGCG...AAUAA.................CGU.U.GAUA..UCCGCGAAAUCGCCCAGCAGACC.G.AGCA.......GG.AA...GUGGUGG...AA.GUGGAAACCGUC....AA.U.GGC..UUCG...........................G.C.C.CGAAC..GACG..UG..AUCC..UCGA
   NZ_CP060401.1     UC.AG.U.GA.AGCG...CAAAA.................CGU.G.GAUA..UCCGCCAGAUUGCGGAGCAGAGC.A.GUGA.......GC.AG...GUUGUUG...AA.GUAGAAAUGGU-....AA.C.GGA..AUUC...........................U.C.U.-----..-ACCaaUG..AU--..----
   NZ_CP062008.1     UC.UC.G.GG.ACCG...AACAA.................CGG.U.GCCAcgUACGCCAAGCUGCCCAACAUCCC.G.AGCA.......G-.UA...GUGGCGG...AA.GUG-ACAACGCC....GA.C.CAG..AACG...........................C.C.G.CCUGC..GCCG..A-..CUCC..GAGA
   NZ_CP063056.1     UC.GA.A.AA.UGCG...CAAUA.................UUU.A.GAUA..UUCGCCAAAUUGCUGAAGAAACG.G.AAAA.......AG.AA...GUGGUCG...CA.GUGGAUACGAUU....UC.C.ACA..UUGG...........................G.G.G.AAAAU..GAUG..UG..AUUC..UGGA
   NZ_CP063425.1     UU.GC.U.GA.AGCG...AGCAA.................UAU.C.GAUA..UCCGGGAAAUCGCCCAGCAGACG.C.AGGA.......AA.CG...GUGGUCG...AA.GUUGAAACGGUU....AA.C.GGU..UUUG...........................G.C.C.CGAAC..GAUG..UG..AUCC..UGGA
   NZ_CP065044.1     UA.AG.C.GA.AGCG...CGGAA.................UAU.U.GAUA..UCCGUCAGAUCGCCGAGCAGACC.A.AGCA.......AG.AA...GUGGUUG...AA.GUCGAAACGGUC....-G.C.GUC..AUUU...........................G.C.C.CCAAC.uGACG..U-..ACUG..CUGG
   NZ_CP065178.1     UG.-A.G.UGaAGCU...CGGAA.................UAU.U.GAUA..UCCGUGAGAUCGCCGAGCAGACC.A.AGCA.......AG.AC...GUGGUUG...AA.GUGGAAACGGUC....GC.G.UCG..UUUG...........................C.G.C.CAACC..GACG..UG..CUGC..UGGA
   NZ_CP065534.1     UG.AG.C.GA.AGCC...CGUAA.................UCU.G.GAUA..UUCGCGAAAUUGCCGAGCAGACC.A.CGCA.......GG.AA...GUGGUGG...CG.GUCGAAACGGUG....GA.U.GCA..U---ucgccgcuaacgauauccugcuggaca-.-.-.-----..--U-..--..-UCG..CU--
   NZ_CP065838.1     UG.GA.A.GA.GGCG...AGCAA.................UAU.C.GAUA..UCCGCGAAAUCGCCCAGCAGACG.G.AAGA.......GA.CG...GUGGUGG...AA.GUGGAAACCGUG....AA.C.GGC..UUUG...........................G.C.G.CCAAC..GACG..CG..AUCC..UCGA
   NZ_CP067977.1     UC.GA.G.UG.GGCA...UAGAA.................GGC.C.GUG-..UAGCCCUGCUCGACGAUGCGACC.G.AGCA.......GG.AG...CAGCAGG...AA.GG--CAA-CAGC....CA.C.GCC..AACG...........................G.C.C.AGUAU..GCCG..UA..AAGC..UUGA
   NZ_CP070290.1     UU.GA.G.GA.AGCG...AAUAA.................CGU.C.GAUA..UCCGCGAAAUCGCCCAGCAGACC.G.AGCA.......GG.AA...GUGGUGG...AA.GUGGAAACCGUC....AA.C.GGC..UUCG...........................G.U.C.CGAAU..GACG..UA..AUCC..UCGA
   NZ_CP071070.1     UG.GC.G.GA.AGCC...AGCAA.................CGU.C.GAUA..UCCGCGAGAUCGCCCAACAGACC.G.AGCA.......GG.AG...GUGGUUG...AA.GUGGAGACCGUC....AG.C.GGC..UUCG...........................G.C.C.CGAAC..GACG..CG..AUCC..UCGA
   NZ_CP071320.1     UG.AG.C.GA.GGCG...AAGAA.................CGU.C.GAUA..UUCGCUCCAUCGCCGAGCAG-GC.GcAGGA.......GC.AG...GUGACCG...AA.GUGGAAACCGUC....GC.G.GCC..UUCG...........................G.C.G.CCGAC..GAGG..UG..AUCC..UGGA
   NZ_CP071383.1     UC.GC.C.GA.AGCG...UCCAA.................UAU.C.GAUA..UUCGCGAAAUUGCUCAGCAGACC.G.AGCA.......GG.AC...GUUGUGG...AA.GUGGAAACCGUG....AA.A.GGU..UUUA...........................G.C.G.CUAAC..GAUG..CG..AUUC..UGGA
   NZ_CP071405.1     UG.GA.A.GA.GGCG...ACCAA.................CGU.C.GAUA..UCCGUACCAUCGCUGAGCAGACC.G.AAGA.......GG.AA...GUGGUAG...AG.GUGGAAACCGUC....GC.C.CUG..CUGA...........................G.U.G.AAAAC..GAUG..UG..GUGC..UGGA
   NZ_CP071487.1     UA.CA.A.AA.CGCC...CAUUA.................UUU.A.GAUA..UUCGUGAGAUCGCUCAACAGACC.G.AAAA.......AG.AA...GUAGUGU...CC.GUUGAAACUACU....UC.U.GAA..UUAG...........................G.C.G.AAAAC..GAUG..UG..AUCU..UAGA
   NZ_CP071802.1     UC.AG.U.GA.AGCA...ACCAA.................UGU.G.GAUA..UUCGCCAAAUUGCCGAACAAAGC.C.GCGA.......AC.AA...UUGGUGG...AA.GUUGAAACCGUU....--.-.GCC.gAACU...........................G.G.C.UGA-C..AGCG..AU..AUCGugCUGG
   NZ_CP072652.1     -U.GA.GcGA.AGCG...AAAAA.................CGU.C.GAUA..UCCGCACCAUCGCCGAGCA-AGC.GcAGGA.......GC.AG...GUUGCCG...AA.GUAGAAACCGUC....GU.G.GAC..UUUG...........................G.C.G.CGGAU..GAUG..UG..AUCC..UCGA
   NZ_CP072931.1     CC.GC.C.GG.CCGG...U---A.................CCG.G.GACG..UCACUGUCACUGCCCGGUACGCC.G.CUUC.......GG.AA...GUGGUGC...CA.GGCGUAUCCGGU....GA.U.CGC..UCCG...........................G.C.G.--GAG..GCC-..AG..ACCG..GCGG
   NZ_CP073236.1     UG.GC.G.GA.AGCG...AGCAA.................UAU.U.GAUA..UCCGCGAUAUCGCUCAGCAGACC.G.AGCA.......GG.AC...GUGGUGG...AA.GUGGAAACCGUU....AG.C.GGU..UUUG...........................G.C.C.CUAAC..GAUG..UG..AUCC..UCGA
   NZ_CP073262.1     UG.CA.G.GA.AGCC...ACUAA.................CGU.U.GAUA..UCCGCGAGAUUGCCGAGCAGACG.G.AAGA.......AG.AA...GUGAUCG...AA.GUGGAAACCGUG....GC.U.UCA..UUCG...........................G.U.G.ACAGC..GAUG..CG..GUGC..UGGA
   NZ_CP074352.1     UG.CA.G.AG.CGCG...ACAAA.................UGU.C.GAUA..UUCGCGAAAUCGCGCAGCAGACC.C.AGCA.......GG.AA...GUAGUGG...AA.GUCGAGACCGUG....AC.C.GGC..UUUG...........................G.C.C.CGAAU..GAGG..UG..AUCC..UCGA
   NZ_CP077262.1     UU.GA.A.GA.AGCG...AACAA.................UAU.C.GAUA..UUCGUGAUAUCGCCCAGCAGACG.C.AGCA.......GA.CU...GUGGUGG...AA.GUGGAAACCGUG....AG.C.GGC..UUCG...........................G.C.C.CGAAC..GAUG..UG..AUUC..UGGA
   NZ_CP077366.1     UU.GA.A.GA.GGCG...ACCAA.................CGU.C.GAUA..UCCGUACCAUCGCUGAGCAGACA.G.AAGA.......GG.AG...GUGGUUG...AA.GUUGAGACCGUC....GC.CcUGC..U-GA...........................G.C.G.AGAAC..GACG..UG..GUGC..UGGA
   NZ_CP077392.1     UG.GC.G.GA.AGCG...UCGAA.................CAU.C.GAUA..UCCGUGAGAUCGCCCAGCAGACC.G.AGCA.......GG.AC...GUGGUUG...AG.GUGGAGACGGUC....AG.C.GGC..UUCG...........................G.U.G.CUAAC..GAUA..CG..AUUC..UGGA
   NZ_CP082141.1     UC.GA.U.GA.AGCG...ACGAA.................CGU.C.GACA..UCCGUGAAAUCGCAGAAAAGACC.G.AAGA.......AG.AA...GUGGUAG...AA.GUGGAAACCGUG....GA.U.UCG..UUCG...........................C.U.G.AAAAC..GAUG..UG..AUCC..UGGA
   NZ_CP082346.1     UG.CA.G.GA.AGCC...AGCAA.................CGU.C.GAUA..UCCGUGAAAUCGCGGAGCAGACG.G.AAGA.......AG.AA...GUGGUGG...AA.GUGGAAACCGUG....G-.-.CGUcaUUCA...........................G.C.G.GCAAC..GAUG..UG..GUGC..UGGA
   NZ_CP082787.1     UC.AG.C.GA.AGCG...AAGAA.................CGU.C.GACA..UCCGCACCAUCGCCGAACAG-GC.GcAGGA.......GC.AG...GUGGCCG...AA.GUGGAAACCGUG....G-.-.CGCagUUUG...........................G.C.G.CCGAC..GAAG..UG..AUCC..UCGA
   NZ_CP082833.1     UG.GA.A.GA.GGCG...ACCAA.................CGU.C.GAUA..UCCGUGAUAUCGCGCAGCAGACC.G.CGCA.......GG.AG...GUGGUUG...AA.GUCGAGACGGUC....AG.C.GGC..UUUG...........................G.C.C.CGAAC..GACG..UG..AUUC..UGGA
   NZ_CP083448.1     UG.GU.G.CA.GGAAgcgACUAA.................UCU.C.GAUA..UCCGCGAGAUUGCUGAACAGACC.G.AAGA.......AG.AA...GUGGUGG...AA.GUAGAGACCGUG....GA.C.UCU..UUUG...........................G.C.A.CUAAC..GAUG..UG..GUGC..UCGA
   NZ_CP083638.1     UU.GA.G.GA.AGCG...AAUAA.................CGU.U.GAUA..UCCGCGAAAUCGCUCAGCAGACC.G.AGCA.......GG.AA...GUGGUGG...AA.GUGGAAACCGUC....AA.C.GGC..UUCG...........................G.C.C.CGAAC..GAUG..UG..AUCC..UCGA
   NZ_CP084032.1     UG.AG.C.GA.AGCG...CGGAA.................UAU.U.GAUA..UCCGUGAGAUCGCAGAACAGACC.A.AGCA.......AG.AA...GUGGUUG...AA.GUCGAAACGGUC....GC.G.UCG..UUUG...........................C.A.C.CGACU..GACG..UG..-UUG..CUUG
   NZ_CP084874.1     UG.GA.A.GA.GGCG...AGCAA.................UAU.C.GAUA..UCCGUGAAAUCGCCCAGCAGACG.G.AAGA.......GA.CG...GUGGUGG...AA.GUGGAAACCGUG....AC.C.GGC..UUUG...........................G.C.G.CCAAC..GACG..CG..AUCC..UCGA
   NZ_CP085871.1     UA.CA.A.CA.UGCA...CAAUA.................UUU.G.GAUA..UUCGUCAAAUUGCAGAGCAAACU.G.AAAA.......AG.AA...GUAGUAG...AG.GUCAAUACUGUU....UC.U.GUG..UUGG...........................A.G.G.CGCAG..GAUA..UU..AUUU..UAGA
   NZ_CP087392.1     UG.AG.U.GA.AGCA...CGGAA.................UAU.U.GAUA..UCCGUGAGAUCGCCGAGCAGACG.A.AGCA.......AG.AU...GUGGUUG...AA.GUCGAAACGGUC....GC.G.UCG..UUUG...........................C.G.C.CAACU..GACG..UG..CUGU..UGGA
   NZ_CP087711.1     UC.GA.A.AA.CGCG...CAGUA.................CAU.G.GAUA..UCCGCGAUAUUGCUGAGCAAGCC.A.AAGA.......GC.AA...AUUCCAG...AA.GUGGAAACUGUG....GC.G.GAG..UUCG...........................G.U.G.CUAAC..GAAG..UG..AUCU..UGGA
   NZ_CP087880.1     UG.GC.G.AA.CGCC...AACAA.................CCU.C.GAUA..UCCGUGAAAUUGCGCAGCAGACC.G.AGCA.......GG.CA...GUGGUGG...AA.GUCGAAACCGUC....AG.C.GGU..UUUG...........................G.C.G.ACAAC..GAUG..UG..AUUC..UGGA
   NZ_CP089919.1     UC.AG.C.GA.AGCG...CGAAA.................CGU.C.GAUA..UCCGUGAAAUUGCCACCCAGGCG.G.CAGA.......AG.UG...GUGCCGG...AA.GUGGAAACUGUC....GC.G.GAG..UUCA...........................C.U.U.CAACU..GACA..UC..GUUC..UGGA
   NZ_CP091779.1     UG.GC.G.GA.AGCG...UCCAA.................CAU.U.GAUA..UCCGCGAGAUUGCCCAGCAGACC.G.AGCA.......GG.AC...GUGGUUG...AA.GUGGAAACCGUG....AG.C.GGU..UUCG...........................G.U.G.CUAAC..GAUG..CG..AUUC..UGGA
   NZ_CP093328.1     UC.AG.C.GA.AGCG...CGCAA.................UGU.C.GAUA..UUCGCGAAAUUGCUACACAGGCG.G.CGGA.......AG.UG...GUACCGG...AA.GUGGAAACUGUG....GC.U.GAG..UUCG...........................U.G.U.CAACA..GACG..UC..GUUC..UGGA
   NZ_CP093334.1     UG.GC.G.GA.AGCG...AAUAA.................CGU.G.GAUA..UUCGCGAUAUCGCCCAGCAGACU.C.AGCA.......GG.AA...GUGGUGG...AA.GUUGAAACCGUG....AC.C.GGC..UUUA...........................G.C.C.CGAAC..GACG..UC..AUUC..UGGA
   NZ_CP096201.1     UU.GC.C.GA.AGCG...AACAA.................CGU.C.GACA..UCCGCGAAAUCGCGCAGCAGACG.C.AGCA.......AG.AG...GUGGUUG...AA.GUUGAAACCGUC....AG.C.GGC..UUUA...........................A.C.G.ACAAC..GACG..UG..AUUC..UGGA
   NZ_CP100494.1     UG.GA.A.GC.GGCG...ACCAA.................CGU.G.GAUA..UCCGCGACAUCGCCACCCAAACC.C.AGCA.......GG.AC...GUGGUGG...AA.GUGGAAACCGUU....AC.C.GGG..UUUG...........................G.C.C.CGAAU..GACG..UG..AUCC..UGGA
   NZ_CP107077.1     UC.GC.G.GA.AGCG...AGCAA.................UAU.C.GAUA..UUCGUGAAAUCGCGCAGCAGACC.U.CGGA.......AG.AG...GUGGUGG...AA.GUCGAAACGGUA....AC.C.GGC..UUCG...........................G.C.G.AGAAU..GACG..CG..AUCC..UCGA
   NZ_FO704551.1     AU.CA.G.UG.AGGC...UCAAA.................AUC.UgGAUA..UCCGCCAAAUUGCCGAACAGGCC.A.GUGA.......GC.AA...GUCGUGG...AA.GUGGAAAUGGUU....UC.U.GCG..UUUU...........................C.C.C.CUGAU..GAUG..UG..UUGC..UGGA
   NZ_LR134167.1     UG.CA.A.AA.UGCG...CAAUA.................UUU.A.GACA..UUCGCCAAAUUGCAGAACAAACG.G.AAAA.......AG.AA...GUGGUGG...AA.GUGGACACCAUU....U-.C.CGU.aUUAG...........................G.C.G.AAAAC..GACA..UU..GUUA..U---
   NZ_LR134201.1     UU.GC.C.GA.AGCG...ACCAA.................UAU.C.GAUA..UCCGUGAUAUUGCGACCCAGACC.C.AGCA.......GG.AA...GUGGUGG...AA.GUCGAAACGGUU....AA.A.GCG..UUUG...........................G.G.C.CAAAU..GA--..AG..UGCU..GCUG
   NZ_LR134485.1     UU.GA.A.GA.AGCG...AACAA.................UAU.U.GAUA..UUCGCGAUAUCGCCCAGCAGACG.C.AGCA.......AA.CC...GUGGUAG...AA.GUGGAAACCGUG....AG.C.GAC..UUCG...........................G.C.C.CGAAC..GAUG..UG..AUUC..UGGA
   NZ_LT615367.1     UU.GA.G.CA.GGCG...CGCAA.................UAU.C.GACA..UCCGUGAGAUUGCUGAACAGACC.A.AACA.......GG.AU...GUGGCAG...AA.GUUGAAACGGUU....GG.U.GAA..UUUG...........................U.C.G.UCAGU..GAUG..UG..CUGC..UUGA
   NZ_LT906448.1     UA.CA.A.AA.UGCG...CAAUA.................UUU.A.GAUA..UUCGUCAAAUUGCAGAGCAAACC.G.AAAG.......AG.AA...GUGGUUG...AA.GUCGAUACUGUU....UC.U.GUA..UUCG...........................C.A.U.CGCAG..GAUG..UG..AUUC..UGGA
   NZ_LT906479.1     -U.GA.GcGA.AGCG...AAGAA.................CGU.C.GACA..UCCGCACCAUCGCCGAGCAG-GC.GcAGGA.......GC.AG...GUGGCCG...AA.GUGGAAACCGUC....GC.G.GCC..UUCG...........................GcG.-.CCGAU..GAGG..UG..AUCC..UCGA


   Structure         ((.((.(.((.((((.........................))).).......(((((....(((((..((...((..............))......)))))))......)))))...((((.........(((.................................).).)........)))).......)))..))))


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thiI



Position: 1215-1294, Conformation: #0







97% 90% 75% 50% Nucleotide present N N N Nucleotide identify E < 0.1 Base-pair covariation E < 0.05 Helix-level covariation 97% 90% 75%

U R R A R G C A A Y R U G A U A U Y C G Y R A A U Y G C Y A R C A R A C Y R R A R R A G U R G Y G A A G U G A R A C G U R Y U U Y R Y R R Y G A Y G Y U Y U G R 5'