tgt-yajC-secD-secF-queA



Position: 4267-4376, Conformation: #1







DMS reactivity > 1.0 0.0 0.4 0.7 G/U/No data
Position: 0 (position.label in template: 0.5')5' Position: 1 (position.label in template: 1.A) Reactivity: nanA Position: 2 (position.label in template: 2.G) Reactivity: nanG Position: 3 (position.label in template: 3.A) Reactivity: nanA Position: 4 (position.label in template: 4.A) Reactivity: nanA Position: 5 (position.label in template: 5.G) Reactivity: nanG Position: 6 (position.label in template: 6.A) Reactivity: nanA Position: 7 (position.label in template: 7.G) Reactivity: nanG Position: 8 (position.label in template: 8.U) Reactivity: nanU Position: 9 (position.label in template: 9.U) Reactivity: nanU Position: 10 (position.label in template: 10.G) Reactivity: nanG Position: 11 (position.label in template: 11.A) Reactivity: nanA Position: 12 (position.label in template: 12.G) Reactivity: nanG Position: 13 (position.label in template: 13.C) Reactivity: nanC Position: 14 (position.label in template: 14.A) Reactivity: nanA Position: 15 (position.label in template: 15.A) Reactivity: nanA Position: 16 (position.label in template: 16.C) Reactivity: nanC Position: 17 (position.label in template: 17.G) Reactivity: nanG Position: 18 (position.label in template: 18.G) Reactivity: nanG Position: 19 (position.label in template: 19.A) Reactivity: nanA Position: 20 (position.label in template: 20.C) Reactivity: nanC Position: 21 (position.label in template: 21.G) Reactivity: nanG Position: 22 (position.label in template: 22.U) Reactivity: nanU Position: 23 (position.label in template: 23.A) Reactivity: nanA Position: 24 (position.label in template: 24.C) Reactivity: nanC Position: 25 (position.label in template: 25.U) Reactivity: nanU Position: 26 (position.label in template: 26.G) Reactivity: nanG Position: 27 (position.label in template: 27.U) Reactivity: nanU Position: 28 (position.label in template: 28.U) Reactivity: nanU Position: 29 (position.label in template: 29.C) Reactivity: nanC Position: 30 (position.label in template: 30.A) Reactivity: nanA Position: 31 (position.label in template: 31.A) Reactivity: nanA Position: 32 (position.label in template: 32.C) Reactivity: 0C Position: 33 (position.label in template: 33.A) Reactivity: 0A Position: 34 (position.label in template: 34.G) Reactivity: nanG Position: 35 (position.label in template: 35.G) Reactivity: nanG Position: 36 (position.label in template: 36.C) Reactivity: 1C Position: 37 (position.label in template: 37.A) Reactivity: 0.5A Position: 38 (position.label in template: 38.A) Reactivity: 0.5A Position: 39 (position.label in template: 39.U) Reactivity: nanU Position: 40 (position.label in template: 40.U) Reactivity: nanU Position: 41 (position.label in template: 41.G) Reactivity: nanG Position: 42 (position.label in template: 42.A) Reactivity: 0A Position: 43 (position.label in template: 43.U) Reactivity: nanU Position: 44 (position.label in template: 44.G) Reactivity: nanG Position: 45 (position.label in template: 45.A) Reactivity: 0A Position: 46 (position.label in template: 46.A) Reactivity: 1A Position: 47 (position.label in template: 47.G) Reactivity: nanG Position: 48 (position.label in template: 48.G) Reactivity: nanG Position: 49 (position.label in template: 49.U) Reactivity: nanU Position: 50 (position.label in template: 50.U) Reactivity: nanU Position: 51 (position.label in template: 51.A) Reactivity: 0A Position: 52 (position.label in template: 52.U) Reactivity: nanU Position: 53 (position.label in template: 53.C) Reactivity: 0C Position: 54 (position.label in template: 54.G) Reactivity: nanG Position: 55 (position.label in template: 55.U) Reactivity: nanU Position: 56 (position.label in template: 56.G) Reactivity: nanG Position: 57 (position.label in template: 57.G) Reactivity: nanG Position: 58 (position.label in template: 58.C) Reactivity: 0C Position: 59 (position.label in template: 59.G) Reactivity: nanG Position: 60 (position.label in template: 60.C) Reactivity: 0.5C Position: 61 (position.label in template: 61.A) Reactivity: 0A Position: 62 (position.label in template: 62.U) Reactivity: nanU Position: 63 (position.label in template: 63.U) Reactivity: nanU Position: 64 (position.label in template: 64.C) Reactivity: 0.5C Position: 65 (position.label in template: 65.A) Reactivity: 0.5A Position: 66 (position.label in template: 66.G) Reactivity: nanG Position: 67 (position.label in template: 67.U) Reactivity: nanU Position: 68 (position.label in template: 68.U) Reactivity: nanU Position: 69 (position.label in template: 69.C) Reactivity: 0C Position: 70 (position.label in template: 70.U) Reactivity: nanU Position: 71 (position.label in template: 71.A) Reactivity: 1A Position: 72 (position.label in template: 72.U) Reactivity: nanU Position: 73 (position.label in template: 73.C) Reactivity: 0C Position: 74 (position.label in template: 74.U) Reactivity: nanU Position: 75 (position.label in template: 75.U) Reactivity: nanU Position: 76 (position.label in template: 76.C) Reactivity: 0.5C Position: 77 (position.label in template: 77.G) Reactivity: nanG Position: 78 (position.label in template: 78.A) Reactivity: 0A Position: 79 (position.label in template: 79.U) Reactivity: nanU Position: 80 (position.label in template: 80.G) Reactivity: nanG Position: 81 (position.label in template: 81.C) Reactivity: 0C Position: 82 (position.label in template: 82.G) Reactivity: nanG Position: 83 (position.label in template: 83.A) Reactivity: 0A Position: 84 (position.label in template: 84.A) Reactivity: 0A Position: 85 (position.label in template: 85.C) Reactivity: 0C Position: 86 (position.label in template: 86.A) Reactivity: 0.5A Position: 87 (position.label in template: 87.U) Reactivity: nanU Position: 88 (position.label in template: 88.C) Reactivity: 0C Position: 89 (position.label in template: 89.A) Reactivity: 0A Position: 90 (position.label in template: 90.C) Reactivity: 0C Position: 91 (position.label in template: 91.C) Reactivity: 0C Position: 92 (position.label in template: 92.A) Reactivity: 0A Position: 93 (position.label in template: 93.C) Reactivity: 0C Position: 94 (position.label in template: 94.G) Reactivity: nanG Position: 95 (position.label in template: 95.C) Reactivity: 0.5C Position: 96 (position.label in template: 96.U) Reactivity: nanU Position: 97 (position.label in template: 97.G) Reactivity: nanG Position: 98 (position.label in template: 98.A) Reactivity: 0A Position: 99 (position.label in template: 99.U) Reactivity: nanU Position: 100 (position.label in template: 100.U) Reactivity: nanU Position: 101 (position.label in template: 101.A) Reactivity: 0A Position: 102 (position.label in template: 102.A) Reactivity: 0.5A Position: 103 (position.label in template: 103.A) Reactivity: 0.5A Position: 104 (position.label in template: 104.G) Reactivity: nanG Position: 105 (position.label in template: 105.U) Reactivity: nanU Position: 106 (position.label in template: 106.C) Reactivity: 0C Position: 107 (position.label in template: 107.A) Reactivity: 0A Position: 108 (position.label in template: 108.U) Reactivity: nanU Position: 109 (position.label in template: 109.C) Reactivity: 0C Position: 110 (position.label in template: 110.A) Reactivity: 0A Position: 111 (position.label in template: 111.U) Reactivity: nanU Position: 112 (position.label in template: 112.C) Reactivity: 0C Position: 113 (position.label in template: 113.C) Reactivity: 0C Position: 114 (position.label in template: 114.U) Reactivity: nanU Position: 115 (position.label in template: 115.G) Reactivity: nanG Position: 116 (position.label in template: 116.U) Reactivity: nanU Position: 117 (position.label in template: 117.A) Reactivity: 1A Position: 118 (position.label in template: 118.C) Reactivity: 1C Position: 119 (position.label in template: 119.G) Reactivity: nanG Position: 120 (position.label in template: 120.C) Reactivity: nanC Position: 121 (position.label in template: 121.A) Reactivity: nanA Position: 122 (position.label in template: 122.G) Reactivity: nanG Position: 123 (position.label in template: 123.U) Reactivity: nanU Position: 124 (position.label in template: 124.G) Reactivity: nanG Position: 125 (position.label in template: 125.G) Reactivity: nanG Position: 126 (position.label in template: 126.G) Reactivity: nanG Position: 127 (position.label in template: 127.U) Reactivity: nanU Position: 128 (position.label in template: 128.A) Reactivity: nanA Position: 129 (position.label in template: 129.C) Reactivity: nanC Position: 130 (position.label in template: 130.C) Reactivity: nanC Position: 131 (position.label in template: 131.G) Reactivity: nanG Position: 132 (position.label in template: 132.G) Reactivity: nanG Position: 133 (position.label in template: 133.G) Reactivity: nanG Position: 134 (position.label in template: 134.G) Reactivity: nanG Position: 135 (position.label in template: 135.C) Reactivity: nanC Position: 136 (position.label in template: 136.A) Reactivity: nanA Position: 137 (position.label in template: 137.A) Reactivity: nanA Position: 138 (position.label in template: 138.U) Reactivity: nanU Position: 139 (position.label in template: 139.U) Reactivity: nanU Position: 140 (position.label in template: 140.A) Reactivity: nanA Position: 141 (position.label in template: 141.A) Reactivity: nanA Position: 142 (position.label in template: 142.A) Reactivity: nanA Position: 143 (position.label in template: 143.G) Reactivity: nanG Position: 144 (position.label in template: 144.G) Reactivity: nanG Position: 145 (position.label in template: 145.G) Reactivity: nanG Position: 146 (position.label in template: 146.U) Reactivity: nanU Position: 147 (position.label in template: 147.U) Reactivity: nanU Position: 148 (position.label in template: 148.C) Reactivity: nanC Position: 149 (position.label in template: 149.G) Reactivity: nanG Position: 150 (position.label in template: 150.C) Reactivity: nanC Position: 151 (position.label in template: 151.3')3' 10 20 30 50 100


tgt-yajC-secD-secF-queA



Position: 4267-4376, Conformation: #1







Retained alignments:


   NC_002620.2       GA.A...U....A.U.UU..A.U..UG..A.....G.UA.G....AA.....G.-..U..U..U.A.U....C.......A.....-..-..G..A...G..U....C...U....G...UAGAG........G......CUG.GUU.A......U......AA..G.A.A....G......GCU..UU..UAGUGC.AAUUUUUGAUUC...............................UAAU...UUAAc.aaC.U...A...UUU...UG..GCUUCG...GCAU...UG..C...U..UCUC-.--............A.UGUU...G...G.AUACA...G.GA.......CC.AAUUA.A.AGGG...UUU
   NC_002977.6       GA.G...G....A.A.CU..G.C..GG..G.....-.CG.G....GC.....A.G..U..A..C.G.C...cC.......C.....A..U..G..C...C..G....C...C....A...UCCAU........G......CAG.GCU.A......U......GA..G.C.G....C......GCA..UU..CGCCAC.GAUUCUGGACUC...............................CAAC...GUCA....C.G...A...CCU...UC..GUCGCC...GGCG...UG..G...C..CCUGU.UC............C.UGCU...U...G.GGGCA...G.GC.......CC.CGUAC.G.GGGC...UUC
   NC_003910.7       GA.A...G....A.A.AU..A.C..GU..G.....A.AG.G....UA.....A.A..A..C..G.A.U....U.......C.....A..A..C..A...A..U....C...A....A...UUCAU........C......AAG.GUU.A......U......GA..U.G.C....A......GCA..UU..UUCAAC.GAUUAUUGAUGC...............................CAAC...AUCA....C.U...A...CCU...UA..AUUGCA...GCGU...UA..A...U..UCUGU.UU............G.CAAU...U...G.GUACU...G.GA.......CC.UGUGA.A.AGGU...UUU
   NC_003911.12      GA.A...G....A.G.CU..G.A..AG..-.....A.CU.G....CC.....A.-..A..G..G.G.C....C.......Cg...gC..A..C..G...G..G....C...C....A...UCGAA........C......UGG.GCU.A......U......GA..A.A.A....G......GCG..CU..GAGCGC.CAUUCUGGACGC...............................CAAC...AUCA....C.C...A...CCU...UC..AUCACG...GCGG...UG..A...U..CCUGU.UC............G.CCAU...G...G.GCUCG...G.GC.......CC.UGUCC.G.GGGC...UUU
   NC_004347.2       GA.U...G....A.G.AU..C.C..GC..G.....C.AG.G....AC.....G.U..A..G..U.G.U....G.......C.....A..G..C..A...G..G....C...G....A...UUCAA........G......AGG.GGU.A......U......GC..C.A.A....U......GCC..UU..UUCAUC.CAUUGCCGAUUC...............................GAAC...AUCA....C.C...A...CCU...UU..AUCACC...GCAU...UG..A...U..UCUCU.UU............G.CCGU...G...G.GUUCU...G.GC.......GC.AGUAA.A.AGGU...UUU
   NC_004556.1       GA.G...G....A.G.UU..G.C..GU..C.....A.CG.G....GA.....U.G..C..C..U.C.C....G.......A.....G..A..U..C...G..G....C...G....A...UUGUG........G......CCG.GUU.A......C......GA..C.A.A....G......GCG..GG..UAGCAC.GAUUCUUGAUGC...............................CAAU...UUGA....C.C...G...GAC...UG..AUUGUU...GGUG...UU..G...C..CUUGU.AU............G.CUUU...C...G.GAACC...G.GU.......CC.UUUGA.A.GGGC...UUU
   NC_004603.1       GA.A...G....A.G.CU..G.C..GA..G.....A.UG.G....AC.....G.C..A..G..U.C.C....A.......C.....A..A..C..A...A..G....C...G....A...UUCAC........C......AAG.GUU.A......-......CG..C.C.A...aC......GCA..UU..UAGUAC.CAUUGCCGAUGC...............................GAAC...AUCA....C.G...A...CGC...UU..AUCACU...GCAA...UC..A...U..UCUGU.UU............G.CUGU...U...G.GUACA...G.GU.......GC.AGUGA.A.AGGU...UUC
   NC_004757.1       GA.U...G....A.A.UU..A.C..GG..C.....A.UG.-....GC.....G.C..C..A..C.A.C...cC.......C.....A..G..G..C...U..G....C...U....A...UCCAU........G......CCG.GGU.A......U......GA..G.C.G....U......GCA..UG..GGAUGC.AAUUAUCGAUAC...............................GAAC...CUCA....C.C...A...CAU...UA..CUCGCC...--GG...UC..-...U..CGGUC.UGa.........ugA.UGUU...U...G.GUAGU...G.GG.......CC.GAUAA.A.AGGC...UUC
   NC_005027.1       GA.A...G....A.A.CU..G.A..GC..A.....A.GG.G....CG.....C.G..A..A..G.G.C....U.......C.....G..C..A..U...G..G....C...G....A...UUCGC........A......ACG.GUU.U......C......GC..U.C.G....A......GCG..AC..CACGAC.GAUCAUCGAUGC...............................CAAC...CUGA....C.C...A...CAC...UG..AUCACC...GCCA...UC..G...U..UCUCU.AU............G.CGAU...C...G.GUACC...G.AC.......CA.AAUCC.G.UGGC...UUU
   NC_005090.1       GA.G...U....G.C.CU..G.A..GG..G.....A.GG.G....CA.....A.A..G..G..A.G.U....C.......G.....U..C..A..A...G..G....C...U....A...UUAGC........G......AGG.GUU.A......U......GC..U.A.A....U......GCU..UC..ACGAGC.CAUUUUCGACUC...............................CAAC...CUCA....C.C...A...CGC...UA..AUCACA...UCAG...UG..C...U..GCUUU.AU............G.CCUA...U...G.GCACA...G.GU.......CC.UAUCA.A.AGGC...UUU
   NC_005125.1       GA.G...G....A.G.CU..G.C..GC..G.....-.CC.G....GCa...aG.C..A..G..C.U.U....U.......U.....U..A..C..C...G..C....-...G....G...UCGAG........G......CCG.GUU.U......C......UC..G.C.G....A......GCC..UU..CACAAG.CAUCUUCGAUAG...............................CCAC...GCCA....C.U...U...CGC...UC..AUCUCC...UGUG...CG..G...U..GCUUU.UC............U.GGCU...G...G.GCACG...G.GG.......CU.GGUCA.A.GGGC...UUC
   NC_005126.1       GA.A...G....A.G.UU..G.C..GU..A.....A.UG.G....CC.....G.G..A..C..A.G.U....C.......C.....A..A..C..A...A..G....C...G....A...UACAU........G......AAG.GUU.A......U......AA..A.G.G....C......GCU..UU..CUCCAG.UAUUAUUGAUGC...............................UAAC...UUGA....C.C...A...CGU...UG..AUUACG...GCGG...UC..A...U..UCUUU.AU............G.CUGU...U...G.GUACC...G.GG.......UC.AAUUA.A.AGGC...UUU
   NC_005861.2       GA.G...G....A.G.UUuaA.A..GU..G.....A.CU.G....GU.....C.G..G..A..U.U.G....-.......-.....C..U..U..C...C..G....C...A....A...UUCAA........G......CAG.GUU.A......C......CG..C.A.A....A......GCU..UU..UAGUGC.UAUCAUUGACUC...............................AAAU...AUUA....C.G...A...CAA...UU..AUUGCA...GCUA...UU..A...U..CUUAA.UU............C.AGUU...C...G.AUUCU...G.GA.......CC.AAUUA.A.GGGC...UUU
   NC_006300.1       GA.A...G....A.A.CU..G.C..GC..A.....A.CG.G....CC.....G.U..C..C..U.A.U....C.......C.....A..A..C..A...A..G....C...C....A...UUAAC........G......AAG.GUU.A......U......AA..U.G.G....A......GCC..UG..GACAUC.CAUUUUCGAUGC...............................CAAC...CUCA....C.U...A...CCA...UU..UUAACC...UCUA...UC..G...U..CCUUU.AU............G.CGGU...A...G.GUACC...G.GC.......CC.GGUUA.A.AGGC...UUU
   NC_006510.1       GA.G...G....A.G.CU..G.A..AG..C.....U.CG.G....CA.....A.G..U..C..G.A.U....G.......C.....U..G..U..C...G..G....C...G....U...UCCGU........G......CUG.GCA.A......C......CG..C.G.G....G......UCG..UU..UGCGAC.GAUUUUUGACGC...............................CAAC...CUUA....C.G...A...CGA...UC..AUCGCC...GGCG...CU..G...U..UCUUU.UU............A.UUUA...C...G.GGACA...A.GC.......UC.GGUGA.A.AGGG...UUU
   NC_006512.1       GA.A...G....A.A.AU..A.A..AA..G.....C.CA.A....AC.....G.A..A..G..C.C.C....U.......C.....A..A..C..A...G..G....C...A....A...UUCAU........C......ACG.GCU.A......U......GA..C.A.G....U......GCC..UU..GUCGAC.CAUUGCCGAUGC...............................GAAC...GUAA....C.C...A...CGC...UG..AUUGCG...GCGC...UU..A...U..CUUGU.UU............G.CUAU...U...G.GUAAU...G.GC.......CC.UAUUA.A.AGGC...UUU
   NC_006513.1       GA.G...G....A.A.CU..G.C..GC..A.....A.CG.G....-C.....G.U..G..U..C.G.C...cG.......C.....A..G..G..C...G..G....C...G....A...UCCAC........A......CCG.GCU.A......C......GA..U.C.G....C......GCG..UU..CGACAC.CAUCCUCGACUC...............................GAAC...AUCA....C.G...A...CGC...UG..AUCGCC...GGCA...UC..G...C..GCUGC.UG............G.UGUU...C...G.GCUCC...G.GC.......CC.GGUGC.G.CGGC...UUC
   NC_006526.2       GA.A...G....A.A.AU..U.G..GC..C.....G.UG.G....GC.....G.C..A..C..C.C.C....C.......G.....U..U..C..A...U..G....C...G....G...UUGAU........A......UGG.GCU.A......U......AA..A.G.A....A......GCU..AG..CCGGAC.GAUUUUUGAUGC...............................CAAU...GUGA...cU.C...A...UGC...UA..-UUUCG...GCGU...UG..A...U..UAUGA.UC............U.GUUU...C...G.GUUCG...G.GG.......CC.UGUUA.A.GGGC...UUU
   NC_006833.1       GA.A...G....A.A.AU..A.A..GA..U.....C.CG.G....AA.....A.A..A..G..A.A.U....A.......G.....U..U..C..G...C..G....C...C....A...UUGAA........G......AAG.GAU.U......U......AA..G.A.A....U......GCA..AU..AAAGAC.AAUCCUUGAUUC...............................AAAU...AUCA....C.U...A...CGU...UA..AUUGCU...GCUG...GG..A...U..AAUGU.UC............G.UUAU...U...G.GCAGC...G.GA.......AC.AAUCA.G.AGGC...UUU
   NC_007204.1       GA.A...G....A.G.CU..G.G..CU..A.....A.UG.G....AG.....U.G..A..G..A.C.C....G.......A.....A..A..U..C...G..G....C...U....A...UCGUA........G......CAG.GUU.U......U......GA..U.C.G....U......GCU..UA..UAGUAG.UAUUUUCGAUGC...............................CAAU...AUCA....C.A...A...CAU...UA..CUCGUC...GCUU...UU..A...U..CUUAU.UU............U.CGAU...U...G.GUACG...G.GU.......CC.GAUUA.A.AGGC...UUU
   NC_007205.1       GA.A...G....A.A.UG..C.A..AG..A.....A.-A.G....AA.....A.A..A..A..A.U.A....A.......U.....A..U..U..A..uA..G....C...U....U...UUGAU........A......CAG.GUU.A......-......UG..U.G.A...aA......UCA..AA..AACUGC.AAUUAUAGACGC...............................AAAC...AUAA....C.C...A...CAU...UA..AUUGCA...GCAG...UA..A...U..CUUAU.UC............U.UUAU...G...G.GCUCU...G.GA.......CC.UGUUA.A.AGGU...UUC
   NC_007481.1       GA.A...G....A.G.CU..G.G..CC..G.....A.UG.G....CC.....G.U..A..G..C.C.C....U.......C.....A..A..C..A...A..G....C...C....G...UUCAU........U......UUG.GUU.A......U......GA..C.A.G....U......GCA..UU..UAGCAC.UAUUUUCGAUGC...............................CAAU...AUUA....C.C...A...CCU...UA..AUUGCU...GCCG...UU..A...U..UUUGU.UU............G.CUGU...G...G.GCACU...G.GC.......CC.AAUUG.C.AGGC...UUU
   NC_007484.1       GA.G...G....A.A.CU..U.C..GA..A.....A.UG.G....CA.....G.C..A..G..C.C.C....U.......C.....A..G..G..C...G..A....G...U....A...UCGAG........G......CAG.GUU.A......U......GC..C.A.A....U......GCC..UU..AUCCAC.UAUUGUGGACGC...............................UAAU...AUCA....C.U...A...CCU...UA..AUAACC...GCGG...UU..G...U..CCUGU.UU............G.GGUU...U...G.GGACG...G.GC.......CC.UAUCA.A.GGGG...UUU
   NC_007498.2       GA.G...G....A.G.UU..G.C..GG..C.....U.CG.G....-C.....A.A..G..A..G.U.G....C.......C.....C..G..C..A...A..U...gC...C....C...UGGAG........G......CCG.GCU.A......C......AG..U.A.A....A......GCC..UU..UUUGAC.CAUUAUGGAUGC...............................CAAU...AUCA....C.G...A...CCC...UG..AUCGCU...GCUU...UG..G...U..GCUCU.UU............C.AGUU...C...G.GCACC...G.GU.......CC.GGUCA.A.AGGC...UUU
   NC_007512.1       GA.G...G....A.G.AU..C.G..CU..G.....A.UG.G....CC.....G.A..A..C..G.G.U...uA.......C.....G..G..C..C...G..C....C...G....U...UACGC........-......AGG.GCU.A......U......GA..C.A.G....G......GCA..UU..UUCCUC.CAUCCUGGAUUC...............................CCAU...GUCA....C.C...A...CGC...UC..GCCGCA...GCUU...UC..C...U..GCUCU.AU............A.CUUA...C...G.GCAUC...G.GU.......CC.GAUUC.A.GGGU...UUC
   NC_007517.1       GA.G...G....A.G.AU..G.C..GG..C.....U.CG.G....-C.....A.A..A..C..C.U.C....C.......C....aA..A..G..C...G..G....C...A....U...UGGAU........G......CCG.GCU.A......U......GA..C.A.A....G......GCG..UU..CCUGAC.CAUCAUGGACUC...............................CCAC...GUGA....C.G...A...CGC...UC..AUCACG...GCCG...CC..G...U..CCUCU.UC............C.AGUU...C...G.GCACC...G.GA.......CC.GGUCA.A.GGGA...UUU
   NC_007530.2       GA.A...G....A.G.CU..A.A..AA..A.....U.UG.G....UA.....A.G..U..C..A.A.U....G.......A.....U..G..U..C...A..G....C...A....U...UCCGU........G......CUG.GUA.A......C......CA..U.C.G....U......UCA..UU..AGCAAC.AAUUUUAGAUGC...............................GAAC...AUUA....C.A...A...CAC...UU..GCAGCA...GCUG...GU..G...U..AUUAU.UC............G.UUUA...C...G.GUAAU...A.GC.......UC.UGUAA.A.AGGA...UUC
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   NZ_OX366356.1     GA.G...G....A.A.AU..C.A..AA..U.....C.UG.-....GC.....A.A.gA..G..A.G.U....G.......G.....A..A..C..G...U..G....C...U....A...UUGAA........G......AAG.GGU.U......U......AA..A.A.A....C......GCU..AU..AAAGAC.AAUACUGGAUUC...............................AAAU...AUCA....C.U...A...CAU...UA..AUUGCU...GCAG...GA..A...U..AAUGU.UC............A.UUAU...U...G.GCAGU...G.GA.......GC.AAUUA.G.AGGC...UUU
   NZ_OX366357.1     GA.G...G....A.A.AU..C.A..AA..U.....C.UG.-....GC.....A.A.gA..G..A.G.U....G.......G.....A..A..C..G...U..G....C...U....A...UUGAA........G......AAG.GGU.U......U......AA..A.A.A....C......GCU..AU..AAAAAC.AAUACUGGAUUC...............................AAAU...AUCA....C.A...A...CAC...UC..AUUACU...GCAG...GA..A...U..AAUGU.UC............A.UUAU...U...G.GCAGU...G.GA.......GC.AAUUA.G.AGGC...UUU
   NZ_OX366362.1     GA.G...G....A.A.AU..C.A..AA..U.....C.UG.-....GC.....A.A.gA..G..A.G.U....G.......G.....A..A..C..G...U..G....C...U....A...UUGAA........G......AAG.GGU.U......U......AA..A.A.A....C......GCC..AU..AAAGAC.AAUACUGGAUUC...............................AAAU...AUCA....C.U...A...CAU...UA..AUUGCU...GCAG...GA..A...U..AAUGU.UU............A.UUAU...U...G.GCAGU...G.GA.......GC.AAUUA.G.AGGC...UUU
   NZ_OX366364.1     GA.G...G....A.A.AU..C.A..AA..U.....C.UG.G....CA.....A.G..A..G..A.G.U....G.......G.....A..A..C..G...U..G....C...U....A...UUGAA........G......AAG.GGU.U......U......AA..A.A.A....C......GCU..AU..AAAGAC.AAUACUGGAUUC...............................AAAU...AUCA....C.U...A...CAU...UA..AUUGCU...GCAG...GA..A...U..AAUGU.UC............A.UUAU...U...G.GCAGC...G.GA.......GC.AAUUA.G.AGGC...UUU
   NZ_OX366369.1     GA.G...G....A.A.AU..A.A..AA..U.....C.UG.G....CA.....A.G..A..G..A.G.U....G.......G.....A..A..C..G...U..G....C...U....A...UUGAA........G......AAG.GGU.U......U......AA..A.A.A....C......GCU..AU..AAAGAC.AAUACUGGAUUC...............................AAAU...AUCA....C.U...A...CAU...UA..AUUGCU...GCAG...GA..A...U..AAUGU.UC............A.UUAU...U...G.GCAGC...G.GA.......GC.AAUUA.G.AGGC...UUU
   NZ_OX366370.1     GA.G...G....A.A.AU..C.A..AA..U.....C.UG.G....CA.....A.G..A..G..A.G.U....G.......G.....A..A..C..G...U..G....C...U....A...UUGAA........G......AAG.GGU.U......U......AA..A.A.A....C......GCU..AU..AAAGAC.AAUACUGGAUUC...............................AAAU...AUCA....C.U...A...CAU...UA..AUUGCU...GCAG...GA..A...U..AAUGU.UC............A.UUAU...U...G.GCAGC...G.GA.......GC.AAUUA.G.AGGC...UUU
   NZ_OX366380.1     GA.G...G....A.A.AU..C.A..AA..U.....C.UG.-....GC.....A.A.gA..G..A.G.U....G.......G.....A..A..C..G...U..G....C...U....A...UUGAA........G......AAG.GGU.U......U......AA..A.A.A....C......GCU..AU..AAAGAC.AAUACUGGAUUC...............................AAAU...AUCA....C.A...A...CAC...UC..AUUGCU...GCAG...GA..A...U..AAUGU.UC............A.UUAU...U...G.GCAGU...G.GA.......GC.AAUUA.G.AGGC...UUU
   NZ_OX366383.1     GA.A...G....A.A.AU..A.A..GA..G.....C.AG.G....AA.....A.A..A..G..A.A.C....A.......G.....C..U..C..G...U..G....C...C....A...UUGAA........G......AAG.GAU.U......U......AA..A.A.A....C......GCA..AU..AAAAAC.AAUUCUUGAUUC...............................AAAU...CUCA....C.U...A...CAC...UG..AUUGCU...GCAG...GA..A...U..AAUGU.UC............A.UUAU...U...G.GUAGC...G.GA.......GC.AAUUA.G.AGGG...UUU
   NZ_OX366391.1     GA.A...G....A.A.AU..A.A..GA..G.....C.AG.G....AA.....A.A..A..G..A.A.C....A.......G.....C..U..C..G...U..G....C...A....A...UUGAA........G......AAG.GAU.U......U......AA..A.A.A....C......GCA..AU..AAAAAC.AAUCCUUGAUUC...............................AAAC...CUCA....C.U...A...CAC...UA..AUUGCU...UCAG...GA..A...U..AAUGU.UC............A.UUAU...U...G.GUAGC...G.GA.......GC.AAUUA.G.AGGA...UUU
   NZ_OX366397.1     GA.G...G....A.A.AU..A.A..AA..U.....C.UG.-....GC.....A.A.gA..G..A.G.U....G.......G.....A..A..C..G...U..G....C...U....A...UUGAA........G......AAG.GGU.U......U......AA..A.A.A....C......GCU..AU..AAAGAC.AAUACUGGAUUC...............................AAAU...AUCA....C.U...A...CAU...UA..AUUGCU...GCAG...GA..A...U..AAUGU.UC............A.UUAU...U...G.GCAGU...G.GA.......GC.AAUUA.G.AGGC...UUU
   NZ_OX366399.1     GA.G...G....A.A.AU..C.A..AA..U.....-.CU.G....GC.....A.A.gA..G..A.G.U....G.......G.....A..A..C..G...U..G....C...U....A...UUGAA........G......AAG.GGU.U......U......AA..A.A.A....C......GCU..AU..AAAGAC.AAUACUGGAUUC...............................AAAU...AUCA....C.U...A...CAU...UA..AUUGCU...GCAG...GA..A...C..AAUGU.UC............A.UUAU...U...G.GCAGU...G.GA.......GC.AAUAA.G.AGGC...UUU


   Structure         ((.(............((..(.(..((..........((.(....((.......(..(..(..(.(.(.....................(..(..(...(..(..................((((.................(.(((.(.............((..(.(.(......................((((............................................))))...........).)...)...))....))..)))......))))..............)))))...............).))))...).....)).))...)..........))...))).)........)))


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tgt-yajC-secD-secF-queA



Position: 4267-4376, Conformation: #1







97% 90% 75% 50% Nucleotide present N N N Nucleotide identify E < 0.1 Base-pair covariation E < 0.05 Helix-level covariation 97% 90% 75%

G A R G A R Y U R R G G R Y R G C R U Y A R G G Y U Y R R R G C Y U R C A U Y U G A Y C A A Y U A C A C U U Y R C G U R U Y U U Y Y U G G C G G Y C R U R R G G Y U U Y 5'