tff-rpsB-tsf



Position: 356-525, Conformation: #1







DMS reactivity > 1.0 0.0 0.4 0.7 G/U/No data
Position: 0 (position.label in template: 0.5')5' Position: 1 (position.label in template: 1.A) Reactivity: nanA Position: 2 (position.label in template: 2.A) Reactivity: nanA Position: 3 (position.label in template: 3.G) Reactivity: nanG Position: 4 (position.label in template: 4.A) Reactivity: nanA Position: 5 (position.label in template: 5.U) Reactivity: nanU Position: 6 (position.label in template: 6.U) Reactivity: nanU Position: 7 (position.label in template: 7.G) Reactivity: nanG Position: 8 (position.label in template: 8.C) Reactivity: nanC Position: 9 (position.label in template: 9.U) Reactivity: nanU Position: 10 (position.label in template: 10.U) Reactivity: nanU Position: 11 (position.label in template: 11.C) Reactivity: nanC Position: 12 (position.label in template: 12.U) Reactivity: nanU Position: 13 (position.label in template: 13.C) Reactivity: nanC Position: 14 (position.label in template: 14.G) Reactivity: nanG Position: 15 (position.label in template: 15.C) Reactivity: nanC Position: 16 (position.label in template: 16.A) Reactivity: nanA Position: 17 (position.label in template: 17.A) Reactivity: nanA Position: 18 (position.label in template: 18.A) Reactivity: nanA Position: 19 (position.label in template: 19.G) Reactivity: nanG Position: 20 (position.label in template: 20.G) Reactivity: nanG Position: 21 (position.label in template: 21.U) Reactivity: nanU Position: 22 (position.label in template: 22.A) Reactivity: nanA Position: 23 (position.label in template: 23.A) Reactivity: nanA Position: 24 (position.label in template: 24.A) Reactivity: nanA Position: 25 (position.label in template: 25.A) Reactivity: nanA Position: 26 (position.label in template: 26.U) Reactivity: nanU Position: 27 (position.label in template: 27.C) Reactivity: nanC Position: 28 (position.label in template: 28.C) Reactivity: nanC Position: 29 (position.label in template: 29.U) Reactivity: nanU Position: 30 (position.label in template: 30.U) Reactivity: nanU Position: 31 (position.label in template: 31.U) Reactivity: nanU Position: 32 (position.label in template: 32.U) Reactivity: nanU Position: 33 (position.label in template: 33.C) Reactivity: nanC Position: 34 (position.label in template: 34.G) Reactivity: nanG Position: 35 (position.label in template: 35.U) Reactivity: nanU Position: 36 (position.label in template: 36.U) Reactivity: nanU Position: 37 (position.label in template: 37.G) Reactivity: nanG Position: 38 (position.label in template: 38.G) Reactivity: nanG Position: 39 (position.label in template: 39.U) Reactivity: nanU Position: 40 (position.label in template: 40.A) Reactivity: 0.5A Position: 41 (position.label in template: 41.C) Reactivity: 0.5C Position: 42 (position.label in template: 42.U) Reactivity: nanU Position: 43 (position.label in template: 43.A) Reactivity: 0.5A Position: 44 (position.label in template: 44.A) Reactivity: 0.5A Position: 45 (position.label in template: 45.A) Reactivity: 1A Position: 46 (position.label in template: 46.C) Reactivity: 1C Position: 47 (position.label in template: 47.G) Reactivity: nanG Position: 48 (position.label in template: 48.C) Reactivity: 0C Position: 49 (position.label in template: 49.G) Reactivity: nanG Position: 50 (position.label in template: 50.C) Reactivity: 0C Position: 51 (position.label in template: 51.U) Reactivity: nanU Position: 52 (position.label in template: 52.G) Reactivity: nanG Position: 53 (position.label in template: 53.C) Reactivity: 1C Position: 54 (position.label in template: 54.A) Reactivity: 0.5A Position: 55 (position.label in template: 55.A) Reactivity: 0.5A Position: 56 (position.label in template: 56.G) Reactivity: nanG Position: 57 (position.label in template: 57.C) Reactivity: 0.5C Position: 58 (position.label in template: 58.G) Reactivity: nanG Position: 59 (position.label in template: 59.A) Reactivity: 0.5A Position: 60 (position.label in template: 60.A) Reactivity: 0.5A Position: 61 (position.label in template: 61.G) Reactivity: nanG Position: 62 (position.label in template: 62.C) Reactivity: 0C Position: 63 (position.label in template: 63.G) Reactivity: nanG Position: 64 (position.label in template: 64.G) Reactivity: nanG Position: 65 (position.label in template: 65.U) Reactivity: nanU Position: 66 (position.label in template: 66.G) Reactivity: nanG Position: 67 (position.label in template: 67.A) Reactivity: 1A Position: 68 (position.label in template: 68.A) Reactivity: 1A Position: 69 (position.label in template: 69.A) Reactivity: 1A Position: 70 (position.label in template: 70.G) Reactivity: nanG Position: 71 (position.label in template: 71.A) Reactivity: 1A Position: 72 (position.label in template: 72.C) Reactivity: 0.5C Position: 73 (position.label in template: 73.G) Reactivity: nanG Position: 74 (position.label in template: 74.C) Reactivity: 0C Position: 75 (position.label in template: 75.U) Reactivity: nanU Position: 76 (position.label in template: 76.G) Reactivity: nanG Position: 77 (position.label in template: 77.C) Reactivity: 0C Position: 78 (position.label in template: 78.U) Reactivity: nanU Position: 79 (position.label in template: 79.C) Reactivity: 1C Position: 80 (position.label in template: 80.U) Reactivity: nanU Position: 81 (position.label in template: 81.G) Reactivity: nanG Position: 82 (position.label in template: 82.A) Reactivity: 0A Position: 83 (position.label in template: 83.G) Reactivity: nanG Position: 84 (position.label in template: 84.C) Reactivity: 0.5C Position: 85 (position.label in template: 85.U) Reactivity: nanU Position: 86 (position.label in template: 86.G) Reactivity: nanG Position: 87 (position.label in template: 87.C) Reactivity: 0C Position: 88 (position.label in template: 88.G) Reactivity: nanG Position: 89 (position.label in template: 89.A) Reactivity: 1A Position: 90 (position.label in template: 90.C) Reactivity: 1C Position: 91 (position.label in template: 91.C) Reactivity: 0.5C Position: 92 (position.label in template: 92.A) Reactivity: 0A Position: 93 (position.label in template: 93.G) Reactivity: nanG Position: 94 (position.label in template: 94.U) Reactivity: nanU Position: 95 (position.label in template: 95.U) Reactivity: nanU Position: 96 (position.label in template: 96.C) Reactivity: 0.5C Position: 97 (position.label in template: 97.U) Reactivity: nanU Position: 98 (position.label in template: 98.U) Reactivity: nanU Position: 99 (position.label in template: 99.C) Reactivity: 0.5C Position: 100 (position.label in template: 100.G) Reactivity: nanG Position: 101 (position.label in template: 101.U) Reactivity: nanU Position: 102 (position.label in template: 102.G) Reactivity: nanG Position: 103 (position.label in template: 103.A) Reactivity: 0A Position: 104 (position.label in template: 104.A) Reactivity: 0.5A Position: 105 (position.label in template: 105.C) Reactivity: 0.5C Position: 106 (position.label in template: 106.C) Reactivity: 0C Position: 107 (position.label in template: 107.A) Reactivity: 0A Position: 108 (position.label in template: 108.U) Reactivity: nanU Position: 109 (position.label in template: 109.C) Reactivity: 0.5C Position: 110 (position.label in template: 110.G) Reactivity: nanG Position: 111 (position.label in template: 111.C) Reactivity: 0C Position: 112 (position.label in template: 112.U) Reactivity: nanU Position: 113 (position.label in template: 113.G) Reactivity: nanG Position: 114 (position.label in template: 114.G) Reactivity: nanG Position: 115 (position.label in template: 115.C) Reactivity: 0.5C Position: 116 (position.label in template: 116.U) Reactivity: nanU Position: 117 (position.label in template: 117.G) Reactivity: nanG Position: 118 (position.label in template: 118.G) Reactivity: nanG Position: 119 (position.label in template: 119.G) Reactivity: nanG Position: 120 (position.label in template: 120.C) Reactivity: 0C Position: 121 (position.label in template: 121.G) Reactivity: nanG Position: 122 (position.label in template: 122.G) Reactivity: nanG Position: 123 (position.label in template: 123.U) Reactivity: nanU Position: 124 (position.label in template: 124.A) Reactivity: 0A Position: 125 (position.label in template: 125.U) Reactivity: nanU Position: 126 (position.label in template: 126.G) Reactivity: nanG Position: 127 (position.label in template: 127.C) Reactivity: 1C Position: 128 (position.label in template: 128.U) Reactivity: nanU Position: 129 (position.label in template: 129.G) Reactivity: nanG Position: 130 (position.label in template: 130.A) Reactivity: 0A Position: 131 (position.label in template: 131.C) Reactivity: 1C Position: 132 (position.label in template: 132.U) Reactivity: nanU Position: 133 (position.label in template: 133.A) Reactivity: 0.5A Position: 134 (position.label in template: 134.A) Reactivity: 0A Position: 135 (position.label in template: 135.C) Reactivity: 1C Position: 136 (position.label in template: 136.U) Reactivity: nanU Position: 137 (position.label in template: 137.G) Reactivity: nanG Position: 138 (position.label in template: 138.G) Reactivity: nanG Position: 139 (position.label in template: 139.A) Reactivity: 0.5A Position: 140 (position.label in template: 140.A) Reactivity: 0.5A Position: 141 (position.label in template: 141.A) Reactivity: 0.5A Position: 142 (position.label in template: 142.A) Reactivity: 0.5A Position: 143 (position.label in template: 143.C) Reactivity: 1C Position: 144 (position.label in template: 144.C) Reactivity: 0.5C Position: 145 (position.label in template: 145.G) Reactivity: nanG Position: 146 (position.label in template: 146.U) Reactivity: nanU Position: 147 (position.label in template: 147.U) Reactivity: nanU Position: 148 (position.label in template: 148.C) Reactivity: 0C Position: 149 (position.label in template: 149.G) Reactivity: nanG Position: 150 (position.label in template: 150.U) Reactivity: nanU Position: 151 (position.label in template: 151.C) Reactivity: 0.5C Position: 152 (position.label in template: 152.A) Reactivity: 0A Position: 153 (position.label in template: 153.G) Reactivity: nanG Position: 154 (position.label in template: 154.U) Reactivity: nanU Position: 155 (position.label in template: 155.C) Reactivity: 1C Position: 156 (position.label in template: 156.C) Reactivity: 0C Position: 157 (position.label in template: 157.A) Reactivity: 0A Position: 158 (position.label in template: 158.U) Reactivity: nanU Position: 159 (position.label in template: 159.C) Reactivity: 1C Position: 160 (position.label in template: 160.A) Reactivity: 0.5A Position: 161 (position.label in template: 161.A) Reactivity: 0A Position: 162 (position.label in template: 162.A) Reactivity: 0A Position: 163 (position.label in template: 163.C) Reactivity: 1C Position: 164 (position.label in template: 164.G) Reactivity: nanG Position: 165 (position.label in template: 165.U) Reactivity: nanU Position: 166 (position.label in template: 166.C) Reactivity: 0C Position: 167 (position.label in template: 167.U) Reactivity: nanU Position: 168 (position.label in template: 168.G) Reactivity: nanG Position: 169 (position.label in template: 169.A) Reactivity: 1A Position: 170 (position.label in template: 170.A) Reactivity: 0.5A Position: 171 (position.label in template: 171.A) Reactivity: 0A Position: 172 (position.label in template: 172.G) Reactivity: nanG Position: 173 (position.label in template: 173.A) Reactivity: 0.5A Position: 174 (position.label in template: 174.C) Reactivity: nanC Position: 175 (position.label in template: 175.C) Reactivity: nanC Position: 176 (position.label in template: 176.U) Reactivity: nanU Position: 177 (position.label in template: 177.G) Reactivity: nanG Position: 178 (position.label in template: 178.G) Reactivity: nanG Position: 179 (position.label in template: 179.A) Reactivity: nanA Position: 180 (position.label in template: 180.A) Reactivity: nanA Position: 181 (position.label in template: 181.A) Reactivity: nanA Position: 182 (position.label in template: 182.C) Reactivity: nanC Position: 183 (position.label in template: 183.U) Reactivity: nanU Position: 184 (position.label in template: 184.C) Reactivity: nanC Position: 185 (position.label in template: 185.A) Reactivity: nanA Position: 186 (position.label in template: 186.G) Reactivity: nanG Position: 187 (position.label in template: 187.U) Reactivity: nanU Position: 188 (position.label in template: 188.C) Reactivity: nanC Position: 189 (position.label in template: 189.U) Reactivity: nanU Position: 190 (position.label in template: 190.C) Reactivity: nanC Position: 191 (position.label in template: 191.A) Reactivity: nanA Position: 192 (position.label in template: 192.G) Reactivity: nanG Position: 193 (position.label in template: 193.G) Reactivity: nanG Position: 194 (position.label in template: 194.A) Reactivity: nanA Position: 195 (position.label in template: 195.C) Reactivity: nanC Position: 196 (position.label in template: 196.G) Reactivity: nanG Position: 197 (position.label in template: 197.G) Reactivity: nanG Position: 198 (position.label in template: 198.U) Reactivity: nanU Position: 199 (position.label in template: 199.A) Reactivity: nanA Position: 200 (position.label in template: 200.C) Reactivity: nanC Position: 201 (position.label in template: 201.U) Reactivity: nanU Position: 202 (position.label in template: 202.U) Reactivity: nanU Position: 203 (position.label in template: 203.U) Reactivity: nanU Position: 204 (position.label in template: 204.C) Reactivity: nanC Position: 205 (position.label in template: 205.G) Reactivity: nanG Position: 206 (position.label in template: 206.A) Reactivity: nanA Position: 207 (position.label in template: 207.C) Reactivity: nanC Position: 208 (position.label in template: 208.A) Reactivity: nanA Position: 209 (position.label in template: 209.A) Reactivity: nanA Position: 210 (position.label in template: 210.G) Reactivity: nanG Position: 211 (position.label in template: 211.3')3' 10 20 30 50 100 150 200


tff-rpsB-tsf



Position: 356-525, Conformation: #1







Retained alignments:


   NC_003910.7       U..U.C...A...U...C...G.A....................................A..A.A....A.A..G..G....U....A....A...A....G...U..................................................AU..UA...UUUGUUGGUA....C..UA...A.....A...C.....G...U.G.C.U.GC..A..A.G.UG.A...U....................................................................G.C....A..A....U...C...A....A....A....G...A...U..GC..U...G...CU..A...U..U...A.....AG...U..C.U.G...A.......C...C.....A.AU.U.C.....U.....A.....C.....GU..................................UAACCACCGCUGGUUAGGUGGUAUGUUGACUAACUGGAAAACAGUUCGUCAAUCUA...UC....AAA..C..GU..U..U.A...AA..AG.A..U.UUAG.A...A.U.C............................................................U.C.A.A....A..G.C....A..C...U...GA.C....G....G..U.A...C.U...UU...CGA
   NC_003911.12      -..-.-...-...-...C...A.A....................................G..G.G....C.G..G..-....-....-....-...-....-...-ccg........................................cguu...-C..UG...UUCGUGGGCA....C..CA...A.....G...C.....G...U.C.A.G.GC..-..C.U.CG.G...-....................................................................G.C....C..C....G...Au.cG....C....C....G...A...A..GC..C...G...CC..G...A..G...A.....AA...U..C.G.G...C.......C...C.....A.GU.A.U.....U.....A.....C.....AU..................................GAACCACCGCUGGCUGGGCGGCACCCUGACCAACUGGAAGACCGUGUCGCAGUCGA...UU....CAG..C..GC..C..U.G...CG..CA.U..-.----.-...-.-.-gaucga............................................cgagaag...-.-.-.-....A..U.G....G..A...A...GG.C....G....G..C.G...C.C...GA...GGG
   NC_004193.1       C..G.C...A...U...C...A.A....................................A..C.G....G.C..G..G....U....A....C...A....A...U..................................................UC..UU...UUCGUUGGUA....C..AA...A.....A...A.....A...-.-.-.-.AC..A..A.G.--.-...-cacaaga.................................................uucugugc....G.U....G..A....U...G...A....A....G....C...A...A..UC..C...G...UU..C...-..-...A.....GG...U..A.U.G...U.......-...-.....-.AU.U.U.....-.....-.....U.....GU..................................GAAUCAACGUUGGUUAGGUGGAACAUUAACAAACUUCCAAACUAUCCGCAAACGUA...UU....AAU..C..GA..U..U.G...AA..AU.C..C.AUUG.A...A.A.A............................................................A.A.U.G....G..A.A....G..A...A...GA.C....G....G..U.A...C.A...UU...CGA
   NC_004347.2       U..G.C...U...U...C...A.A....................................A..G.A....A.A..G..G....U....A....A...A....G...U..................................................AU..UA...UUCGUUGGUA....C..UA...A.....A...C.....G...U.G.C.U.GC..U..G.G.CG.A...A....................................................................G.C....G..A....U...C...A....A....A....G...A...A..GC..U...G...CU..A...U..U...U.....CU...U..G.U.G...A.......U...C.....A.GU.A.C.....U.....A.....U.....GU..................................UGAUCACCGUUGGUUAGGCGGUAUGCUGACUAACUGGAAAACCGUUCGUCAGUCAA...UC....AAA..C..GU..C..U.G...AA..AG.A..A.CUGG.A...A.A.G............................................................C.C.A.A....U..C.A....G..U...A...GA.C....G....G..U.A...C.U...UU...UGA
   NC_004556.1       -..-.-...-...-...-...-.-....................................-..C.G....C.A..G..U....-....-....-...-....-...-ugcacagaag..........................cgcggaagcgu...UC..UG...UUUGUGGGGA....C..CA...A.....G...C.....G...C.A.G.U.GC..G..C.G.GG.A...U....................................................................G.C....G..A....U...C...A....A....G....G...A...A..GA..G...G...CC..G...A..A...C.....GU...U..G.U.G...G.......U...A.....U.GC.C.U.....U.....A.....C.....AU..................................GAUCCAGCGUUGGCUCGGUGGCACGUUGACUAACUUCCGUACGGUGAAGCAAUCGG...UU....GCC..C..GU..C..U.G...AA..GG.A..G.CUCG.AgcuA.G.C............................................................C.G.A.G....-..-.-....A..C...A...GA.C....G....G..U.A...C.U...UU...CAG
   NC_004578.1       -..G.C...G...C...C...U.-ggcg.........................ucgg...G..C.A....A.A..A..A....C....A....A...G....A...U..................................................UC..UG...UUCGUCGGCA....C..CA...A.....G...C.....G...C.U.C.C.GC..U..G.G.CA.-...-agau........................................................cguu....-.-....-..G....C...U...G....A....A....G...A...A..GC..A...G...CA..C...-..-...-.....GU...U..G.C.G...G.......U...U.....C.GC.C.G.....U.....A.....C.....GU..................................CGAUCAUCGCUGGUUGGGCGGCAUGCUGACCAACUUCAAGACCAUCCGUCAGUCGA...UC....AAA..C..GU..C..U.G...CG..CG.A..G.CUGG.A...A.G.U............................................................A.C.A.A....G..C.U....G..A...A...GA.C....G....G..U.A...C.U...UU...CGC
   NC_004603.1       -..-.-...C...G...A...G.A....................................A..A.A....A.A..G..G....U....A....A...A....G...U..................................................UC..UA...UUCGUAGGUA....C..UA...A.....G...C.....G...C.G.C.U.GC..A..U.C.UG.A...A....................................................................G.C....U..G....U...U...A....A....A....G...A...A..GC..U...G...CA..A...U..C...G.....CU...A..G.C.A...A.......C...C.....A.GU.U.C.....U.....A.....C.....GU..................................GAACAACCGUUGGUUGGGCGGUAUGCUAACGAACUACAAAACUGUUCGUCAGUCAA...UC....AAG..C..GU..C..U.A...AA..AG.A..A.CUUG.A...G.A.U............................................................U.C.A.A....U..C.U....C..A...A...GA.C....G....G..U.A...C.U...UU...CGA
   NC_005027.1       U..G.C...C...G...C...U.G....................................G..C.G...gC.A..G..C....U....-....U...G....A...U..................................................CC..UG...UUCGUCGGCA....C..CA...A.....G...C.....G...U.C.A.G.GC..U..G.G.UG.A...A....................................................................G.C....CguC....G...A...A....G....A....G...C...A..GU..C...G...CU..G...C..-...-.....GU...U..G.C.G...G.......C...A.....U.GC.C.U.....U.....U.....C.....GU..................................CAGCGAGCGUUGGCUCGGUGGCACGCUGACCAACUUCCGCACCAUUCGUAGCCGAC...UG....GGC..C..GU..U..U.G...GA..AG.A..G.CUGG.A...A.G.C............................................................A.C.U.G....C..G.U....G..C...A...GG.C....G....A..U.G...G.C...AU...CAA
   NC_005126.1       U..G.C...U...U...C...A.C....................................G..C.A....A.A..G..G....C....A....A...A....A...U..................................................UC..UG...UUUGUUGGUA....C..UA...A.....G...C.....G...U.G.C.U.GC..G..A.G.CG.A...A....................................................................G.C....G..G....U...U...A....A....A....G...A...A..GC..A...G...CU..C...A..G...A.....AC...U..G.U.G...A.......U...C.....A.AU.U.C.....U.....U.....C.....GU..................................UAAUCACCGUUGGUUGGGCGGUAUGCUGACUAACUGGAAAACCGUUCGUCAAUCCA...UC....AAA..C..GU..U..U.G...AA..AG.A..U.UUAG.A...A.G.C............................................................A.C.A.G....U..C.U....C..A...G...GA.C....G....G..U.A...C.U...UU...UGA
   NC_005966.1       -..-.-...-...-...C...A.A....................................G..C.A....A.A..A..A....G....Aa.caA...A....G...U..................................................UU..UG...UUCGUUGGUA....C..UA...A.....G...C.....G...U.G.C.U.G-..-..-.-.--.-...-cuucua...................................................acaucau....-.C....C..G....U...G...A....A....C....A...A...G..-C..U...-...--..C...A..A...C.....GU...G..C.U.G...G.......U...C.....A.AC.C.A.....U.....A.....U.....GU..................................AGAUCACCGUUGGUUAGGUGGUAUGUUGACGAACUGGAAAACACUUCGCCAAUCUA...UC....AAC..C..GU..U..U.G...AA..AG.A..U.CUUC.A...A.A.C............................................................U.C.A.A....U..C.U....C..A...A...GA.U....G....G..U.A...C.U...UU...UGC
   NC_006138.1       C..G.U...G...A...A...A.A....................................A..C.G....A.G..G..G....U....U....C...U....G...U..................................................UC..UU...UUCGUAGGUA....C..UA...A.....G...C.....G...-.-.-.-.--..-..-.-.--.-...-ucaggcaca.............................................auccaucauu....-.-....-..-....-...-...A....A....G....G...A...A..GA..A...G...CU..C...G..C...C.....GA...U..G.U.G...G.......U...C.....A.GU.A.C.....U.....A.....U.....GU..................................UGAUCACCGCUGGUUGGGUGGUAUGCUUACCAACUUCCAAACCAUCAAGAACAGCA...UU....GAU..C..GU..U..U.G...AA..GU.C..C.----.-...-.-.-aucgaag..........................................caaugcaa...-.-.-.-....-..-.-....G..A...A...GA.U....G....G..U.U...C.U...AU...CAA
   NC_006300.1       -..-.C...A...A...G...U.A....................................A..C.A....A.C..G..G....U....A....A...A....A...U..................................................UU..UA...UUCGUUGGUA....C..AA...A.....A...C.....G...C.G.C.A.GC..G..A.C.UG.A...A....................................................................G.C....A..G....U...U...C....A....A....G...C...A..GC..A...G...CA..U...U..A...G.....AC...U..G.U.C...A.......A...C.....A.AU.A.U.....U.....A.....U.....GU..................................AAAUCACCGUUGGUUAGGCGGUAUGUUGACUAACUGGAAAACGGUUCGUCAAUCAA...UC....AAA..C..GU..U..U.A...AA..AG.A..U.UUAG.A...A.A.C............................................................U.C.A.A....U..C.U....C..A...A...GA.C....G....G..U.A...C.A...UU...CGA
   NC_006512.1       U..G.C...U...U...C...U.A....................................A..C.A....A.A..G..G....C....A....A...A....A...U..................................................CC..UG...UUUGUUGGUA....C..UA...A.....G...C.....G...C.G.C.A.GC..A..G.C.UG.A...A....................................................................G.C....G..G....U...U...A....A....A....G...A...A..GC..A...G...CC..A...U..U...A.....AC...U..G.U.G...G.......U...C.....A.GU.A.C.....U.....A.....U.....GU..................................AAACCACCGUUGGUUAGGCGGCAUGUUGACUAACUGGAAAACAGUUCGUCAAUCAA...UC....AAG..C..GU..C..U.A...AA..AG.A..C.CUUG.A...A.A.C.........................................................a.aU.G.A.G....-..-.C....C..A...G...GA.C....G....G..U.A...C.U...UU...CGA
   NC_007204.1       -..-.-...-...-...-...U.A....................................A..G.A....A.A..A..A....C....A....A...A....G...U..................................................AU..UA...UUUGUUGGUA....C..UA...A.....A...C.....G...C.G.C.A.GC..A..A.G.UG.-...-gugu........................................................uauc....G.C....U..G....A...G...C....A....A....G...C...A..GC..-...A...C-..-...-..-...-.....GC...G..C.U.G...G.......U...A.....U.GC.C.A.....U.....A.....C.....GU..................................UGACCAUCGCUGGUUAGGUGGUAUGUUGACUAACUGGAAAACACUACGCCAGUCAA...UC....AAU..C..GU..C..U.A...AA..AG.A..G.CUUG.A..gA.A.G............................................................C.A.A.G....-..C.U....G..A...A...GA.C....G....G..U.A...C.A...UU...UGC
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   NZ_LT906446.1     U..U.C...U...U...-...-.-acguag....................cguugcu...G..A.A....G.A..A..G...gC....A....A...A....A...-gc...........................................au...UU..UA...UUCGUAGGUA....C..UA...A.....A...A.....A...A.C.A.A.GC..U..C.A.AG.A...A....................................................................G.C....U..A....U...U...A....A....A....G...A...A..GA..A...G...CU..U...U..A...A.....AA...G..C.U.G...G.......U...A.....U.GU.A.C.....U.....A.....U.....GU..................................AAACGAAAGAUGGCUCGGCGGUAUGAUGACUAACUUUGCUACAAUCCGCAAAAGCA...UC....AAU..C..GU..U..U.A...AA..AG.A..A.CUUG.A...A.G.C............................................................U.A.U.G....G..A.A....C..A...A...GA.U....G....G..U.A...C.U...UU...CGA
   NZ_LT906448.1     C..G.C...U...A...G...U.A....................................A..C.A....A.C..G..G....U....A....A...A....A...U..................................................CU..UA...UUCGUUGGAA....C..CA...A.....A...C.....G...U.G.C.A.GC..A..A.C.UG.A...A....................................................................G.C....A..G....U...U...A....A....A....U...C...A..AC..A...G...CA..U...U..A...G.....AC...U..G.U.C...A.......A...C.....A.AU.A.U.....U.....A.....U.....GU..................................UAAUCACCGUUGGUUAGGUGGUAUGUUGACUAACUGGAAAACAGUUCGUCAAUCAA...UU....AGA..C..GU..U..U.A...AA..AG.A..U.UUAG.A...A.A.C............................................................U.C.A.A....U..C.U....C..A...A...GA.U....G....G..U.A...C.U...UU...CGA
   NZ_LT906451.1     -..-.-...-...-...-...-.-....................................-..-.-....-.-..-..-....A....A....A...G....A...U..................................................UU..UA...UUUGUGGGUA....C..UA...A.....G...A.....G...G.G.C.A.GC..U.cA.G.GA.U...A....................................................................G.C....A..U....C...C...G....-....U....G...A...G..CA..U...G...CA..A...A..G...C.....GC...U..G.U.G...G.......C...A.....U.GC.C.C.....U.....A.....U.....GU..................................UGACCAUCGCUGGUUAGGUGGCAUGUUGACCAAUUGGAAGACAGUUCGUCAAUCUA...UC....UUU..C..GU..U..U.G...AA..AG.A..-.AUUG.A...A.A.G............................................................A.A.A.U....G..CgU....G..A...A...AA.A....G....G..U.G...C.A...UU...CGA
   NZ_LT906463.1     U..G.C...U...A...G...C.A....................................A..C.A....A.C..G..G....U....A....A...A....G...U..................................................AU..UA...UUCGUUGGUA....C..UA...A.....A...C.....G...C.G.C.G.GC..U..C.A.AG.A...A....................................................................G.C....A..G....U...A...C....A....A....G...C...U..GC..A...G...CA..U...U..A...G.....AC...U..G.U.C...A.......A...C.....A.AU.A.U.....U.....A.....C.....GU..................................AAACCACCGUUGGUUAGGUGGUAUGUUGACUAACUGGAAAACAGUUCGUCAAUCAA...UU....AAA..C..GU..U..U.A...AA..AG.A..U.UUAG.A...A.A.C............................................................C.C.A.A....G..C.U....C..A...A...GA.C....G....G..U.A...C.U...UU...UGA
   NZ_LT906470.1     G..C.U...U...C...C...C.A...................................aG..G.U....G.A..A..G....U....A....-...-....A...U..................................................CU..UG...UUCGUAGGUA....C..UA...A.....A...A.....A...A.C.A.A.GC..U..C.A.AG.A...A....................................................................G.C....U..A....U...U...A....A....A....G...A...AgaAG..C...G...AU..C...C..G...C.....GC...U..A.-.-...A.......C...A.....U.GU.U.C.....U.....U.....C.....GU..................................AAACGAACGUUGGUUGGGCGGUAUGUUGACUAACUUCAAAACAAUUGAAACACGUA...UU....AAA..C..GU..U..U.G...AA..AC.A..A.UUGG.A...A.G.C............................................................U.A.U.G....G..C.U....G..A...A...GA.C....G....G..C.A...C.U...UU...CGA
   NZ_LT906482.1     U..G.G..cU...G...C...C.A....................................A..C.A....A.A..G..G....C....A....C...C....A...U..................................................CC..UG...UUUGUCGGCA....C..CA...A.....G...C.....G...C.C.A.A.GC..C..-.-.--.-...-cgcgac...................................................aucgugc....-.-....-..-....G...U...G....A....A....G...A...A..GC..U...A...CC..C...-..-...-.....GU...G..C.C.G...G.......U...A.....U.GC.C.C.....U.....A.....U.....GU..................................GGAUCACCGCUGGUUGGGCGGCAUGCUGACCAACUACAAAACUGUUAAGCAGUCUA...UC....AAA..C..GC..U..U.-...--..--.-..-.----.-...-.-.-ggaagaaaaagcugccau.....................uuuggaaaaugcugaagc...-.-.-.-....-..-.-....-..-...C...AG.C....G....G..U.U...A.C...AA...CAA
   NZ_LT907988.1     C..G.C...C...G...C..cA.A....................................G..G.G....C.-..G..G....U....A....C...G....G...U..................................................CC..UG...UUCGUCGGCA....C..CA...A.....G...C.....G...C.G.C.C.GC..G..C.G.CG.A...G................................................................c.ugG.U....G..G....C...U...G....C....C....G...A...A..GC..C...G...CC..C...-..-...-.....GC...G..C.C.G...G.......C...A.....U.GC.C.U.....U.....U.....C.....GU..................................UGACAGCCGUUGGCUGGGCGGCAUGCUGACCAACUUCAAGACGGUCAAGAGCUCGA...UC....AAG..C..GC..C..U.G...AA..GG.A..C.AUGG.A...A.G.-............................................................C.C.A.U...gU..C.G....G..U...C...GA.C....G....G..C.G...G.C...CU...GGA
   NZ_OU015521.1     U..-.-...-...U...G...A.A....................................A..A.A....C.G..G..G....-....A....A...A....A...U..................................................UU..UG...UUUGUAGGCA....C..UA...A.....A...U.....U...U.G.C.A.GC..U..C.G.CG.A...A....................................................................A.U....U..G....U...G...A....A....A....G...A...A..GA..A...G...CU..A...U..U...C.....GU...U..G.U.G...G.......U...A.....U.GC.C.U.....U.....A.....U.....GU..................................GAACCAUCGUUGGCUAGGAGGCAUGCUGACUAAUUAUAAAACCGUUCAUCAAUCGA...UU....AAA..C..GU..U..U.A...AA..GG.A..A.CUCG.A...A.G.A............................................................G.U.A.U....U..U.A....A..A...A...AA.U....G....A..-.-...-.-...--...---
   NZ_OU594967.1     A..G.C...U...U...C...U.A....................................A..A.A....A.A..G..G....U....A....A...A....A...U..................................................UC..UG...UUUGUUGGUA....C..AA...A.....A...C.....G...U.G.C.U.GC..A..A.G.CG.G...U....................................................................G.C....U..G....U...A...A....A....A....G...A...A..GC..U...G...CG..A...G..C...C.....GU...U..G.U.G...A.......U...C.....A.GU.U.U.....U.....A.....U.....GU..................................UAACCACCGCUGGUUAGGUGGCAUGUUAACUAACUGGAAAACUGUUCGCCAGUCAA...UC....AAA..C..GC..C..U.G...AA..AG.A..U.UUAG.A...A.G.C............................................................U.C.A.G....A..G.C....C..A...A...GA.C....G....G..C.A...C.U...UU...UGA
   NZ_OU907312.1     U..G.C...C...G...C...C.C....................................G..U.A....A.A..G..G....A....A....A...A....G...U..................................................GC..UG...UUUGUGGGAA....C..CA...A.....A...C.....G...C.G.C.C.GC..C..A.G.CG.A...G....................................................................G.C....C..A....U...C...A....G....U....A...C...G..GC..G...G...CC..C...A..A...G.....CG...U..G.C.G...A.......U...C.....A.AU.U.C.....U.....A.....U.....GU..................................GAACCAUCGCUGGCUAGGCGGCAUGCUCACCAACUGGAAAACCGUACGCCAAUCGA...UC....AAG..C..GU..C..U.C...AA..AG.A..G.UUAG.A...G.G.U............................................................G.C.A.A....G..C.A....C..A...A...GA.U....G....G..U.A...C.C...UU...UGA
   NZ_OU912926.1     U..G.C...U...G...C...-.-caau.........................aagg...G..C.A....C.G..A..U....-....-....-...-....-...-..................................................AU..UG...UUUGUUGCGA....C..UA...A.....G...C.....G...U.C.A.A.GC..G..C.G.UG.A...A....................................................................A.U....U..A....U...U...A....A....A....G...A...A..GA..G...G...CG..C...U..U...C.....GU...U..G.U.G...G.......C...A.....G.CC.C.U.....U.....U.....U.....GU..................................UGAUCAUCGCUGGCUGGGCGGUAUGCUCACUAAUUUCAAGACGGUACAGCAAUCCG...UC....AAG..C..GU..U..U.G...CA..UG.A..A.CUGG.A...A.G.C............................................................U.A.U.G....A..U.G....U..U...G...GA.U....Ag..cG..U.A...G.C...CA...UGG


   Structure         (..(.(......................................................)..).)....(.(..(..(..............................................................................))..))....(((..((((....(...........................(.(.(.(.((.....................................................................................).)....)..)....)...).............................((..(...(...((..(........................(.(.(.......................((.(.(...........................................................))))...))).....)))))))................................................(..((..(..(.........((.(....((((......................................................................).).).)....)..).)...........)...)).)....)....)..).)...).)........)))


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tff-rpsB-tsf



Position: 356-525, Conformation: #1







97% 90% 75% 50% Nucleotide present N N N Nucleotide identify E < 0.1 Base-pair covariation E < 0.05 Helix-level covariation 97% 90% 75%

R R G R A R U Y Y U U U Y G U G G Y A C Y A A R R R C Y R R R G A R G G C R Y G R Y R Y Y U Y G U R A Y C A C G Y U G G Y U R G G Y G G Y A U G Y U R A C Y A A C U R A R A C R U Y R A R Y A U Y R A C G Y Y U R R A Y R G A Y G G Y R C U Y G A 5'