tff-rpsB-tsf



Position: 1638-1802, Conformation: #0







DMS reactivity > 1.0 0.0 0.4 0.7 G/U/No data
Position: 0 (position.label in template: 0.5')5' Position: 1 (position.label in template: 1.U) Reactivity: nanU Position: 2 (position.label in template: 2.A) Reactivity: nanA Position: 3 (position.label in template: 3.A) Reactivity: nanA Position: 4 (position.label in template: 4.A) Reactivity: nanA Position: 5 (position.label in template: 5.G) Reactivity: nanG Position: 6 (position.label in template: 6.G) Reactivity: nanG Position: 7 (position.label in template: 7.C) Reactivity: nanC Position: 8 (position.label in template: 8.G) Reactivity: nanG Position: 9 (position.label in template: 9.C) Reactivity: nanC Position: 10 (position.label in template: 10.U) Reactivity: nanU Position: 11 (position.label in template: 11.G) Reactivity: nanG Position: 12 (position.label in template: 12.A) Reactivity: nanA Position: 13 (position.label in template: 13.C) Reactivity: nanC Position: 14 (position.label in template: 14.G) Reactivity: nanG Position: 15 (position.label in template: 15.A) Reactivity: nanA Position: 16 (position.label in template: 16.A) Reactivity: nanA Position: 17 (position.label in template: 17.G) Reactivity: nanG Position: 18 (position.label in template: 18.A) Reactivity: nanA Position: 19 (position.label in template: 19.G) Reactivity: nanG Position: 20 (position.label in template: 20.C) Reactivity: nanC Position: 21 (position.label in template: 21.U) Reactivity: nanU Position: 22 (position.label in template: 22.G) Reactivity: nanG Position: 23 (position.label in template: 23.G) Reactivity: nanG Position: 24 (position.label in template: 24.U) Reactivity: nanU Position: 25 (position.label in template: 25.U) Reactivity: nanU Position: 26 (position.label in template: 26.A) Reactivity: nanA Position: 27 (position.label in template: 27.A) Reactivity: nanA Position: 28 (position.label in template: 28.A) Reactivity: nanA Position: 29 (position.label in template: 29.C) Reactivity: nanC Position: 30 (position.label in template: 30.A) Reactivity: nanA Position: 31 (position.label in template: 31.C) Reactivity: nanC Position: 32 (position.label in template: 32.A) Reactivity: nanA Position: 33 (position.label in template: 33.U) Reactivity: nanU Position: 34 (position.label in template: 34.C) Reactivity: nanC Position: 35 (position.label in template: 35.G) Reactivity: nanG Position: 36 (position.label in template: 36.C) Reactivity: nanC Position: 37 (position.label in template: 37.U) Reactivity: nanU Position: 38 (position.label in template: 38.A) Reactivity: 1A Position: 39 (position.label in template: 39.U) Reactivity: nanU Position: 40 (position.label in template: 40.G) Reactivity: nanG Position: 41 (position.label in template: 41.C) Reactivity: 0C Position: 42 (position.label in template: 42.A) Reactivity: 0A Position: 43 (position.label in template: 43.C) Reactivity: 0C Position: 44 (position.label in template: 44.G) Reactivity: nanG Position: 45 (position.label in template: 45.U) Reactivity: nanU Position: 46 (position.label in template: 46.U) Reactivity: nanU Position: 47 (position.label in template: 47.G) Reactivity: nanG Position: 48 (position.label in template: 48.C) Reactivity: 1C Position: 49 (position.label in template: 49.U) Reactivity: nanU Position: 50 (position.label in template: 50.G) Reactivity: nanG Position: 51 (position.label in template: 51.C) Reactivity: 0C Position: 52 (position.label in template: 52.A) Reactivity: 0A Position: 53 (position.label in template: 53.A) Reactivity: 0.5A Position: 54 (position.label in template: 54.G) Reactivity: nanG Position: 55 (position.label in template: 55.C) Reactivity: 0C Position: 56 (position.label in template: 56.A) Reactivity: 1A Position: 57 (position.label in template: 57.A) Reactivity: 1A Position: 58 (position.label in template: 58.G) Reactivity: nanG Position: 59 (position.label in template: 59.C) Reactivity: 0C Position: 60 (position.label in template: 60.C) Reactivity: 0C Position: 61 (position.label in template: 61.A) Reactivity: 0A Position: 62 (position.label in template: 62.G) Reactivity: nanG Position: 63 (position.label in template: 63.A) Reactivity: 0.5A Position: 64 (position.label in template: 64.A) Reactivity: 1A Position: 65 (position.label in template: 65.U) Reactivity: nanU Position: 66 (position.label in template: 66.U) Reactivity: nanU Position: 67 (position.label in template: 67.C) Reactivity: 0C Position: 68 (position.label in template: 68.A) Reactivity: 0.5A Position: 69 (position.label in template: 69.U) Reactivity: nanU Position: 70 (position.label in template: 70.C) Reactivity: 0.5C Position: 71 (position.label in template: 71.A) Reactivity: 0.5A Position: 72 (position.label in template: 72.A) Reactivity: 0.5A Position: 73 (position.label in template: 73.A) Reactivity: 0.5A Position: 74 (position.label in template: 74.C) Reactivity: 0.5C Position: 75 (position.label in template: 75.C) Reactivity: 0C Position: 76 (position.label in template: 76.G) Reactivity: nanG Position: 77 (position.label in template: 77.G) Reactivity: nanG Position: 78 (position.label in template: 78.A) Reactivity: 0.5A Position: 79 (position.label in template: 79.A) Reactivity: 0.5A Position: 80 (position.label in template: 80.G) Reactivity: nanG Position: 81 (position.label in template: 81.A) Reactivity: 1A Position: 82 (position.label in template: 82.C) Reactivity: 0.5C Position: 83 (position.label in template: 83.G) Reactivity: nanG Position: 84 (position.label in template: 84.U) Reactivity: nanU Position: 85 (position.label in template: 85.A) Reactivity: 0A Position: 86 (position.label in template: 86.U) Reactivity: nanU Position: 87 (position.label in template: 87.C) Reactivity: 0C Position: 88 (position.label in template: 88.C) Reactivity: 0C Position: 89 (position.label in template: 89.G) Reactivity: nanG Position: 90 (position.label in template: 90.C) Reactivity: 0C Position: 91 (position.label in template: 91.U) Reactivity: nanU Position: 92 (position.label in template: 92.G) Reactivity: nanG Position: 93 (position.label in template: 93.A) Reactivity: 1A Position: 94 (position.label in template: 94.A) Reactivity: 1A Position: 95 (position.label in template: 95.G) Reactivity: nanG Position: 96 (position.label in template: 96.U) Reactivity: nanU Position: 97 (position.label in template: 97.G) Reactivity: nanG Position: 98 (position.label in template: 98.G) Reactivity: nanG Position: 99 (position.label in template: 99.U) Reactivity: nanU Position: 100 (position.label in template: 100.A) Reactivity: 0.5A Position: 101 (position.label in template: 101.G) Reactivity: nanG Position: 102 (position.label in template: 102.A) Reactivity: 0A Position: 103 (position.label in template: 103.A) Reactivity: 0A Position: 104 (position.label in template: 104.A) Reactivity: 0A Position: 105 (position.label in template: 105.A) Reactivity: 1A Position: 106 (position.label in template: 106.A) Reactivity: 1A Position: 107 (position.label in template: 107.G) Reactivity: nanG Position: 108 (position.label in template: 108.A) Reactivity: 0A Position: 109 (position.label in template: 109.A) Reactivity: 0A Position: 110 (position.label in template: 110.U) Reactivity: nanU Position: 111 (position.label in template: 111.A) Reactivity: 0A Position: 112 (position.label in template: 112.C) Reactivity: 0C Position: 113 (position.label in template: 113.C) Reactivity: 0.5C Position: 114 (position.label in template: 114.A) Reactivity: 0A Position: 115 (position.label in template: 115.G) Reactivity: nanG Position: 116 (position.label in template: 116.G) Reactivity: nanG Position: 117 (position.label in template: 117.U) Reactivity: nanU Position: 118 (position.label in template: 118.A) Reactivity: 0.5A Position: 119 (position.label in template: 119.C) Reactivity: 0.5C Position: 120 (position.label in template: 120.A) Reactivity: 0.5A Position: 121 (position.label in template: 121.G) Reactivity: nanG Position: 122 (position.label in template: 122.C) Reactivity: 0C Position: 123 (position.label in template: 123.U) Reactivity: nanU Position: 124 (position.label in template: 124.G) Reactivity: nanG Position: 125 (position.label in template: 125.G) Reactivity: nanG Position: 126 (position.label in template: 126.A) Reactivity: 0.5A Position: 127 (position.label in template: 127.U) Reactivity: nanU Position: 128 (position.label in template: 128.A) Reactivity: 0A Position: 129 (position.label in template: 129.U) Reactivity: nanU Position: 130 (position.label in template: 130.C) Reactivity: 1C Position: 131 (position.label in template: 131.G) Reactivity: nanG Position: 132 (position.label in template: 132.C) Reactivity: 0.5C Position: 133 (position.label in template: 133.G) Reactivity: nanG Position: 134 (position.label in template: 134.A) Reactivity: 0.5A Position: 135 (position.label in template: 135.U) Reactivity: nanU Position: 136 (position.label in template: 136.G) Reactivity: nanG Position: 137 (position.label in template: 137.C) Reactivity: 1C Position: 138 (position.label in template: 138.A) Reactivity: 1A Position: 139 (position.label in template: 139.G) Reactivity: nanG Position: 140 (position.label in template: 140.U) Reactivity: nanU Position: 141 (position.label in template: 141.C) Reactivity: 0.5C Position: 142 (position.label in template: 142.U) Reactivity: nanU Position: 143 (position.label in template: 143.G) Reactivity: nanG Position: 144 (position.label in template: 144.G) Reactivity: nanG Position: 145 (position.label in template: 145.U) Reactivity: nanU Position: 146 (position.label in template: 146.A) Reactivity: 1A Position: 147 (position.label in template: 147.A) Reactivity: 0A Position: 148 (position.label in template: 148.G) Reactivity: nanG Position: 149 (position.label in template: 149.C) Reactivity: 0.5C Position: 150 (position.label in template: 150.C) Reactivity: 0.5C Position: 151 (position.label in template: 151.G) Reactivity: nanG Position: 152 (position.label in template: 152.A) Reactivity: 1A Position: 153 (position.label in template: 153.A) Reactivity: 0A Position: 154 (position.label in template: 154.A) Reactivity: 1A Position: 155 (position.label in template: 155.G) Reactivity: nanG Position: 156 (position.label in template: 156.A) Reactivity: 0.5A Position: 157 (position.label in template: 157.A) Reactivity: 0A Position: 158 (position.label in template: 158.A) Reactivity: 0.5A Position: 159 (position.label in template: 159.U) Reactivity: nanU Position: 160 (position.label in template: 160.C) Reactivity: 1C Position: 161 (position.label in template: 161.G) Reactivity: nanG Position: 162 (position.label in template: 162.C) Reactivity: 0C Position: 163 (position.label in template: 163.A) Reactivity: 0A Position: 164 (position.label in template: 164.G) Reactivity: nanG Position: 165 (position.label in template: 165.A) Reactivity: 0.5A Position: 166 (position.label in template: 166.G) Reactivity: nanG Position: 167 (position.label in template: 167.A) Reactivity: 0.5A Position: 168 (position.label in template: 168.A) Reactivity: 0A Position: 169 (position.label in template: 169.A) Reactivity: nanA Position: 170 (position.label in template: 170.A) Reactivity: nanA Position: 171 (position.label in template: 171.U) Reactivity: nanU Position: 172 (position.label in template: 172.G) Reactivity: nanG Position: 173 (position.label in template: 173.G) Reactivity: nanG Position: 174 (position.label in template: 174.U) Reactivity: nanU Position: 175 (position.label in template: 175.U) Reactivity: nanU Position: 176 (position.label in template: 176.G) Reactivity: nanG Position: 177 (position.label in template: 177.A) Reactivity: nanA Position: 178 (position.label in template: 178.A) Reactivity: nanA Position: 179 (position.label in template: 179.G) Reactivity: nanG Position: 180 (position.label in template: 180.G) Reactivity: nanG Position: 181 (position.label in template: 181.C) Reactivity: nanC Position: 182 (position.label in template: 182.C) Reactivity: nanC Position: 183 (position.label in template: 183.G) Reactivity: nanG Position: 184 (position.label in template: 184.C) Reactivity: nanC Position: 185 (position.label in template: 185.A) Reactivity: nanA Position: 186 (position.label in template: 186.U) Reactivity: nanU Position: 187 (position.label in template: 187.G) Reactivity: nanG Position: 188 (position.label in template: 188.A) Reactivity: nanA Position: 189 (position.label in template: 189.A) Reactivity: nanA Position: 190 (position.label in template: 190.G) Reactivity: nanG Position: 191 (position.label in template: 191.A) Reactivity: nanA Position: 192 (position.label in template: 192.A) Reactivity: nanA Position: 193 (position.label in template: 193.A) Reactivity: nanA Position: 194 (position.label in template: 194.U) Reactivity: nanU Position: 195 (position.label in template: 195.U) Reactivity: nanU Position: 196 (position.label in template: 196.C) Reactivity: nanC Position: 197 (position.label in template: 197.A) Reactivity: nanA Position: 198 (position.label in template: 198.C) Reactivity: nanC Position: 199 (position.label in template: 199.C) Reactivity: nanC Position: 200 (position.label in template: 200.G) Reactivity: nanG Position: 201 (position.label in template: 201.G) Reactivity: nanG Position: 202 (position.label in template: 202.C) Reactivity: nanC Position: 203 (position.label in template: 203.G) Reactivity: nanG Position: 204 (position.label in template: 204.A) Reactivity: nanA Position: 205 (position.label in template: 205.A) Reactivity: nanA Position: 206 (position.label in template: 206.3')3' 10 20 30 50 100 150 200


tff-rpsB-tsf



Position: 1638-1802, Conformation: #0







Retained alignments:


   NC_002977.6       G...C.G...G.C..G...A...C.G....C....C....G....A.A.C...UG.....G.....G.....C....AAGG.A......................................CAUCGCCAUGCA...CAUCGC....GG..C....G...A..GC.A.A.....G.C...C....--....-....-...--.-...-.-...--.---.--..--..-...--..-...--.........---...-..-...-...-...--...-..................................................-..-...--.-...-...--...-.-...-..-.--..-.....-.-......-.-.--....-....-....-....-.-.-cuugugcugugacgagaagggcgugccggccgaagugaucg.ccaaggagaaggaaaucuucagugcccaggcacaggccagc..--..-.------....-...-...-..-.-----.-.....-..-..G.G.C.AA..GCCAG.C.....G.......AAC.AUCGUCGAAAAGAUGGUC....GAAG....GCCG...G...AUCGG....C..A..A..G...........................U...UCC.U...C..G..G..C
   NC_003910.7       G...-.-...-.U..G...A...U.G....C....A....G....A.A.U...CA.....C.....U.....U....AAGC.A......................................CAUUGCUAUGCA...CGUUGC....UG..C....A...A..GC.A.A.....A.C...C....UG....A....G...UU.C...U.U...AA.CUC.CU..GA..U...GA..C...GU.........UCC...A..G...C...U...GA...U..................................................G..U...UG.U...U...GC...C.A...A..U.GA..A.....A.A......G.C.GC....A....U....U....C.A.A.....................................................................................AU..C.GAAAUG....G...C...G..A.UGAAC.G.....A..A..G.G.C.AA..GCCUC.A.....A.......GAA.AUCGCUGAGAAGAUGGUU....ACAG....GCCG...C...AUGAA....G..A..A..G...........................U...UUA.C...U..G..G..U
   NC_003911.12      G...C.G...G.C..G...A...C.G....A....G....G....C.C.C...UG.....G.....G.....C....AAGC.A......................................GGUUGCGAUGCA...UAUCGC....CG..CcgugA...A..CC.C.C.....G.C...C....GC....G....C...UG.A...G.C...GA.AGC.CG..--..A...GA..U...GG.........ACC...C..G...G...U...--...C..................................................G..U...GG.U...C...GA...G.A...A..G.GA..A.....A.A......G.C.AG....G....U....G....C.A.G.....................................................................................AU..G.GAUAUC....G...C...C..C.GCGAA.U.....C..C..G.G.C.AA..GCCCG.A.....A.......GCG.GUGAUCGAGAAGAUGAUC....GAAG....GCCG...G...AUGAA....G..A..A..A...........................U...UCG.U...C..G..C..C
   NC_004347.2       A...C.G...C.U..G...A...U.G....A....G....G....A.A.A...CU.....C.....U.....G....AAGC.A......................................CCUAGCUAUGCA...CGUUGC....UG..C....U...U..CU.A.A.....G.C...C....AG....A....A...UA.C...G.U...UA.ACC.CA..GA..A...GA..C...GU.........UCC...A..G...C...U...GA...C..................................................G..U...AG.U...U...GC...U.C...G..U.GA..A.....C.A......A.G.CU....C....U....A....C.A.A.....................................................................................AU..C.GAAAUC....U...C...U..A.UGAAU.G.....A..A..G.G.C.AA..ACCUG.C.....U.......GAC.AUCGCAGAGAAAAUGGUU....GUUG....GUCG...U...AUGAA....G..A..A..G...........................U...UCA.C...C..G..G..U
   NC_004578.1       G...C.G...G.C..A...A...C.G....U....C....G....A.G.C...UG.....G.....C.....U....AAAG.A......................................UAUCGCCAUGCA...CGUCGC....GG..C....A...A..GC.A.A.....C.C...C....UG....A....G...UU.C...C.U...GU.UCC.CU..UC..G...GA..A...GU.........UUC...G..G...C...C...GA...A..................................................G..C...GA.U...C...G-...-.-...-..-.--..-.....-.-......-.-.--....-....-....-....-.-.-agcgcgagaagaguguc.................................................uuccugcaacugaacga..--..-.-----A....G...A...C..A.AGAUC.A.....A..A..G.G.C.AA..GCCAG.C.....U.......GAA.AUCGUCGAGAAGAUGGUU....GGCG....GCCG...U...AUCAC....C..A..-..A...........................G...UUC.C...U..G..G..C
   NC_004603.1       G...C.G...A.C..G...C...U.G....A....A....A....-.-.-...CU.....C.....U.....U....AAGC.A......................................CGUAGCAAUGCA...CGUUGC....UG..C....U...U..CU.A.A.....G.C...C....AG....A....G...UA.C...G.U...AA.ACC.CA..GA..A...GA..C...GU.........ACC...A..G...C...U...GA...C..................................................G..U...AG.U...U...GC...U.A...A..A.GA..G.....A.A......A.G.AA....G....U....U....C.A.A.....................................................................................GU..U.GAAAUC....G...C...U..A.UGAAC.G.....A..A..G.G.C.AA..GCCAG.C.....U.......GAG.AUCGCUGAGAAGAUGGUU....GUUG....GCCG...C...AUGAA....G..A..A..A...........................U...UCA.C...A..G..G..C
   NC_005126.1       G...C.G...C.U..A...A...U.G....A....A....G....A.G.C...UG.....A.....U.....U....AAGC.A......................................UGUGGCUAUGCA...CAUCGC....CG..C....A...A..GC.A.A.....G.C...C....AG....A....A...UA.U...G.U...UA.ACC.CA..AG..U...GA..U...GU.........ACC...G..G...C...U...GA...U..................................................G..U...UG.U...U...GA...U.C...G..U.GA..G.....C.A......C.C.AA....A....U....C....C.A.A.....................................................................................CU..G.GAUAUC....G...C...A..A.UGCAG.U.....C..U..G.G.C.AA..GCCAC.G.....C.......GAA.AUCGCAGAGAAAAUGGUU....UCUG....GUCG...U...AUGAA....U..A..A..A...........................U...UCA.C...U..G..G..U
   NC_005966.1       G...U.A...G.U..G...C...U.G....A....A....A....-.-.C...UG.....G.....U.....-....AAAG.G......................................UAUUGCAAUGCA...CGUUGC....UG..C....G...U..UU.A.A.....U.C...C....AG....U....U...GC.A...G.U...AA.GUG.CU..GA..A...GC..A...GU.........ACC...A..G...C...A...GA...-ccu........................................aguu...G..C...UA.A...A...GA...G.A...A..A.GA..A.....A.-......-.U.UG....C....U....G....A.A.G.....................................................................................CA..-.---AAA....G...C...A..A.UUGAA.U.....C..U..G.G.C.AA..ACCUG.C.....A.......AAC.AUUGUGGAGAAAAUGGUG....UCUG....GUUC...A...GUUGA....A..A..A..A...........................U...ACU.U...G..A..A..C
   NC_006300.1       G...U.U...C.U..G...C...C.G....A....C....G....A.A.C...U-.....-.....-.....U....AAAA.A......................................AGUAGCAAUGCA...CGUUGC....CG..C....A...U..CA.A.A.....A.C...C....UG....A....A...UU.C...G.U...UA.AUC.CG..GA..A...GA..C...GU.........UUC...U..G...C...A...GA...U..................................................G..U...AG.U...U...GA...A.C...A..C.GA..A.....C.G......U.C.AA....A....U....C....C.A.A.....................................................................................AU..C.GACAUC....G...C...A..A.UCAAC.U.....C..C..G.G.A.AA..ACCGA.A.....A.......GAA.AUCGCAGAGAAAAUGGUU....GAAG....GCCG...U...AUGAA....G..A..A..A...........................U...UCA.C...C..G..G..U
   NC_006512.1       G...C.G...G.U..G...A...C.G....A....A....G....A.U.C...UG.....G.....C.....U....CGUG.A......................................CCUGUGCAUGCA...UGUUGC....AG..C....A...A..GC.A.G.....C.C...C....GC....A....A...UU.C...G.U...UA.AGC.CU..GA..A...GA..C...GU.........UGC...A..G...C...U...GA...A..................................................G..U...UG.U...A...GA...A.A...A..A.GA..G.....C.G......U.U.CU....A....U....U....C.A.G.....................................................................................GU..U.GAUAUC....G...C...A..A.UGCAA.A.....G..C..G.G.U.AA..GCCGA.A.....A.......GAA.AUUGCUGAAAAAAUGGUU....GAAG....GCCG...U...AUGCG....U..A..A..G...........................U...UUA.C...C..G..G..C
   NC_007204.1       G...U.G...G.C..A...G...U.G....C....A....G...aA.A.C...UG.....G.....U.....A....AAA-.A......................................CCUUGCUAUGCA...CAUCGC....UG..C....G...U..UC.A.A.....C.C...C....AG....U....U...GC.U...A.U...UG.AUG.AC..GA..A...GA..C...GU.........UGC...U..G...C...U...GA...-uuu........................................guua...G..C...GC.G...C...GA...A.A...A..A.GA..C.....-.-......-.-.--....-....-....-....-.-.-aucau.........................................................................ugaag..--..-.-CAAAA....G...C...A..C.GUGAG.U.....C..U..G.G.C.AA..GCCUG.A.....C.......AAC.AUCGUUGAAAAAAUGAUC....GAAG....GUGG...C...CU-AC....G..U..A..A...........................G...U-A.C...C..U..A..-
   NC_007481.1       U...U.G...C.U..G...A...U.G....A....A....G....A.A.A...CA.....C.....U.....U....AAGC.A......................................CGUUGCAAUGCA...CGUUGC....UG..C....A...-..UC.A.A.....G.C...C....CU....G....A..gUA.C...U.U...AA.CUC.CU..UC..A...GA..C...GU.........UCC...U..G...C...U...GA...U..................................................G..U...UG.U...A...GC...U.A...A..A.GA..A.....C.A......A.C.AA....G....U....A....C.A.A.....................................................................................AU..C.GAAAUC....G...C...G..A.UGAAU.G.....A..A..G.G.U.AA..AUCUG.C.....U.......GAA.AUCGCUGAGAAGAUGGUU....GUUG....GCCG...C...AUGAA....A..A..A..A...........................U...UCA.C...U..G..G..U
   NC_007484.1       G...C.G...G.U..G...A...A.G....A....A....G....C.A.U...UG.....G.....C.....U....AAAG.A......................................UCUUGCGAUGCA...UAUUGC....GG..C....G...A..GU.A.A.....G.C...C....GC....A....G...GC.U...A.U...UG.CAC.CA..AA..A...GA..U...AU.........UCC...A..G...U...A...GA...G..................................................A..U...UU.U...G...GA...U.A...A..A.GA..G.....A.G......A.G.CU....A....U....U....C.A.G.....................................................................................AU..U.GCUCAA....G...C...C..A.AGGAC.A.....G..U..G.G.U.AA..ACCGC.C.....C.......GAG.AUCAUUGAGAAGAUGGUG....CAAG....GCCG...G...UUGCA....A..A..A..G...........................U...UCU.U...A..A..G..C
   NC_007498.2       G...C.G...A.U..G...A...U.G....A....G....-....C.G.C...--.....-.....-.....-....----.-gucgcggcucu...............cggucgaaaccu---GGCCAUGCA...UAUCGC....CG..C....U...G..CC.A.A.....C.C...C....UC....A....G...UA.U...C.U...GA.ACC.GC..GA..C...GA..A...GU.........GUC...G..G...C...C...GA...G..................................................G..U...UG.U...U...GA...A.A...A..A.GA..A.....A.A......A.G.AG....A....U....U....A.U.G.....................................................................................CG..U.ACCAAG....G...C...U..C.UGGAG.A.....G..U..G.G.U.AA..GCCGG.A.....G.......AAG.AUCGUUGAAAAAAUUAUC....GCCG....GGCA...A...AUCAA....U..A..A..A...........................U...AUU.U...C..G..G..C
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   NZ_LT906434.1     G...U.G...C.C..G...A...A.G....A....C....G....U.U.G..cCC.....G.....C.....A....AAGU.A......................................GGU----AUGCA...CAUCGU....UG..C....C...G..CC.A.A.....A.C...C....CC....A....A...UG.C...G.UgucUG.AAA.GC..GA..A...GU..A...GA.........UGC...G..G...-...-...-A...A..................................................A..C...CG.U...U...GA...A.A...A..A.GA..A.....C.-......-.-.--....-....-....-....-.-.-gucgcau....................................................................uuacaccc..--..-.-AACAA....G...C...U..A.UCGAA.U.....C..A..G.G.C.AA..ACCUG.C.....C.......GAA.AUCGCCGAAAAAAUGGUU....GAAG....GCCG...C...AUCAA....A..A..A..A...........................U...UC-.U...U..G..G..C
   NZ_LT906442.1     A...U.G...G.A..A...G...U.G....A....A....U....C.U.C...UU.....G.....C.....U....AAAG.A......................................CAUCGCCAUGCA...UAUUGC....AG..C....A...A..GC.A.A.....G.C...C....AA....U....G...GU.U...G.U...GA.GUA.AA..GA..U...CA..G...GU.........UCC...A..G...C...U...GA...A..................................................G..C...CA.U...A...GA...A.A...A..U.GA..-.....-.-......-.A.AG....A....G....A....C.A.U.....................................................................................CU..U.UACAGCucaaG...C...A..A.AAGAA.A.....G..U..G.G.A.AA..GCCAC.A.....A.......GAC.AUUAUUGACAAAAUGAUC....GAUG....GACG...A...AUUAA....U..A..A..G...........................U...UCA.U...U..G..A..U
   NZ_LT906444.1     G...A.A...C.U..A...C...U.G....A...uA....C....U.A.C...UGu...uG.....C.....U....AAAG.A......................................UGUUGCAAUGCA...CAUCGC....UG..C....A...A..UU.A.A.....C.C...C....UA....A....A...UA.C...A.U...UU.CUC.GU..GA..U...GA..U...GU.........UUC...U..U...C...A...GA...A..................................................G..A...AG.U...A...GC...A.C...A..C.GA..A.....A.A......A.G.AA....G....U....A....U.-.-ua..............................................................................acg..--..-.CAACAA....G...C...A..U.UAAAC.G.....A..A..G.G.C.AA..ACCAG.C.....U.......AAU.AUCGUUGAAAAAAUGGUA....GAAG....GCCG...U...UUGAA....A..A..A..A...........................U...ACC.U...A..A..G..C
   NZ_LT906448.1     G...C.A..gA.C..G...A...A.G....A....A....U....U.A.C...--.....-.....U.....U....AAGA.A......................................AGUUGCAAUGCA...CAUUGC....UG..C....A...A..GC.C.G.....U.C...C....AG....A....A...UA.U...G.U...UA.ACC.CA..UC..U...GA..U...GU.........UCC...U..G...C...U...GA...U..................................................G..U...CG.U...U...GA...G.C...A..U.GA..G.....C.G......U.C.AA....A....U....U....C.AaG.....................................................................................UU..G.-AUAUC....G...C...A..A.UGCAA.U.....C..U..G.G.A.AA..ACCAC.G.....U.......GAA.AUUGCAGAGAAAAUGGUU....GAAG....GUCG...U...AUGAA....G..A..A..A...........................U...UUA.C...U..G..G..C
   NZ_LT906451.1     A...C.G...G.U..G...A...C.G....A....A....A....C.G.C...UU.....G.....C.....U....AAAG.A......................................UAUUGCUAUGCA...UGUUGC....AG..C....C...A..GC.C.G.....U.C...C....UA....U....G...GU.U...G.U...CA.ACC.GC..GA..U...CA..A...GU.........AUC...U..U...C...C...GA...A..................................................G..C...CA.U...U...GA...A.A...A..U.GA..A.....C.-......-.-.--....-....-....-....-.-.-gugaaauc..................................................................uuuacggcg..--..-.-CAAGC....G...C...G..U.GAAAG.C.....-..-..G.G.U.AA..GCCAC.A.....A.......GAC.AUUAUCGAUAAGAUGAUU....GAAG....GCCG...C...AUUAA....U..A..A..A...........................U...UUG.U...A..G..A..U
   NZ_LT906463.1     G...U.U...C.U..G...C...A.G....A....C....G....A.A.C...U-.....-.....-.....U....AAAA.A......................................AGUGGCAAUGCA...CGUAGC....UG..C....A...U..CU.A.A.....A.C...C....AG....A....A...UU.C...G.U...GA.ACC.CA..GA..A...GA..U...GU.........ACC...U..G...C...A...GA...A..................................................G..U...AG.U...U...GA...A.C...A..C.GA..A.....C.G......U.C.AA....A....U....C....C.A.A.....................................................................................AU..U.GAUAUC....G...C...G..G.UUAAC.U.....C..U..G.G.U.AA..ACCAA.A.....A.......GAA.AUCGCAGAGAAAAUGGUU....GAAG....GCCG...U...AUGAA....G..A..A..A...........................U...UCA.C...C..G..G..U
   NZ_LT906479.1     G...C.G...C.U..G...A...C.G....A....A....G....A.G.C...UG.....G.....U.....U....AAGC.A......................................AAUCGCCAUGCA...CGUUGC....GG..C....G...A..GC.A.A.....G.C...C....AG....A....A...UU.C...G.U...UA.AGC.CU..GA..A...GA..U...GU.........GUC...U..G...C...A...GA...A..................................................G..U...GG.U...U...GA...G.A...A..A.GA..G.....U.A......C.C.AG....G....U....U....C.A.G.....................................................................................CU..G.GACAUC....G...C...C..A.UGCAG.U.....C..U..G.G.C.AA..GCCGA.A.....A.......GAA.AUCGCAGAGAAAAUGGUU....GAAG....GCCG...C...AUGAA....G..A..A..A...........................U...UCA.C...C..G..G..C
   NZ_LT906482.1     G...C.G...A.U..G...A...G.Ac..cA....C....U....G.C.C...CG.....-.....-.....-....--UC.A......................................CGUUGGCAUGCA...CAUCGU....GG..C....U...U..CU.A.A.....G.C...C....GC....A....A...UG.C...A.U...UU.CUG.CC..GA..G...CA..G...GU.........UGA...U..C...C...C...GA...A..................................................G..U...GG.U...G...GC...U.A...A..A.GA..G.....C.G......C.-.--....-....-....-....-.-.-cacauc.......................................................................uacacc..--..-.GAGCAG....G...C...G..A.UUGCU.U.....C..C..G.G.C.AA..GCCCG.C.....C.......GAA.AUAGCCGCCAAAAUGGUG....GAAG....GCCG...C...GUGAA....G..A..A..A...........................U...UC-.U...U..G..G..C
   NZ_OU015521.1     A...C.A...A.A..G...A...U.A....A....A...uU....A.G.Cu.cUA.....G.....C.....U....AAAG.A......................................UAUUGCCAUGCA...UAUUGC....CG..C....C...U..UU.A.A.....U.C...C....GC....A....A...GC.G...A.U...UC.GGG.CC..AG..U...GA..C...GU.........ACC...U..A...U...U...GA...A..................................................A..C...AG.U...G...GA...A.A...A..G.GA..A.....A.A......-.-.--....-....-....-....-.-.-agaaauc.....................................................................uuaauag..--..-.-CACAA....G...C...A..A.AAGAA.A.....G..C..G.G.A.AA..GUCUA.A.....A.......GAU.AUUAUUACUAAAAUAAUA....GACG....GUCG...C...UUGAA....U..A..A..A...........................U...UCU.U...A..A..A..A
   NZ_OU594967.1     G...U.G...G.U..G...A...U.G....A....A....G....A.A.C...UG.....G.....C.....U....AAAG.A......................................CUUGGCGAUGCA...CGUUGC....GG..C....A...G..CC.A.G.....C.C...C....AC....A....G...UU.C...G.U...UA.AAC.CA..GA..C...GA..U...GU.........ACC...U..G...C...U...GA...A..................................................G..U...UG.U...U...GA...A.A...A..A.GA..A.....A.A.....aG.C.AA....U....U....C....A.A.A.....................................................................................UU..G.-AUAUU....G...C...A..A.UGAAC.A.....G..C..G.G.U.AA..ACCUG.C.....U.......GAA.AUUGCAGAAAAAAUGGUU....GCUG....GCCG...G...AUGAA....A..A..A..A...........................U...UCA.C...U..G..G..C
   NZ_OU907312.1     G...C.G...G.C.gG...A...U.G....C....U....G....A.A.C...UU.....C.....U.....C....AAGC.A......................................GAUCGCCAUGCA...UAUUGC....GG..C....C...A..AU.A.A.....G.C...C....GG....C....G...UA.U...A.U...UC.AGC.CU..CA..U...GA..G...GU.........GCC...C..A...C...C...GC...C..................................................G..U...GA.U...A...GA...C.C...G..G.GA..A.....C.G......G.G.AG....G....U....A....C.A.G.....................................................................................UU..A.GCCAUU....G...C...A..C.UGCAG.U.....C..G..G.G.U.AA..ACCAC.A.....G.......GAG.AUUGCUGAAAAAAUGGUGgcggGACG....GCUG...C...-UAAA....-..-..-..A...........................U...UUA.C...C..A..G..U
   NZ_OU912926.1     G...U.G...G.U..G...A...C.G....A....U....G....C.A.U...UG.....G.....G.....U....AAAG.A......................................UUUGGCGAUGCA...CAUCGC....UG..C....G...A..GC.A.A.....G.C...C....GG....U....A...UG.-...-.-...--.---.--..--..-...--..-...--.........---...-..-...-...-...--...-uguuuccaaagagcaagucu......cucaggaguugcuugauacug...-..-...--.-...-...--...-.-...-..-.--..-.....-.-......-.-.--....-....-....-....-.-.-aacgcaagguauacac..................................................cgcacaagccgcagaaa..--..-.------....-...-...-..-.-----.-.....G..C..G.G.A.AA..GCCGG.C.....C.......AAU.AUUAUUGAAAAGAUGGUG....GAUG....GACGuauU...GCCAA....G..U..A..U...........................U...UGG.C...-..-..-..C


   Structure         (...(.(.....(..(...(...(.(...................(.(.(...((..................................................................))..)))........))))).....))..)...........((.........(.(...(....((..................................................................(...(..(...(...............................................................)..)...))............................................(.(.((.............................................................................................................))..).)..................................)..)..).).).....))....................................................((((........((((.........................................)...))).....)..)..)..)


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tff-rpsB-tsf



Position: 1638-1802, Conformation: #0







97% 90% 75% 50% Nucleotide present N N N Nucleotide identify E < 0.1 Base-pair covariation E < 0.05 Helix-level covariation 97% 90% 75%

G Y G Y G A Y G R R Y Y R Y A A R A Y R U Y G C A U G C A Y R U Y G C G C Y A A C C Y Y U G R R A G U Y C R G A Y G R G A R R A G G Y A A R C C R R A A U Y R Y G A R A A R A U G R U Y G G G Y C G Y U R R A A R U Y Y Y R Y 5'