tatA-tatB-tatC-tatD



Position: 30-164, Conformation: #0







DMS reactivity > 1.0 0.0 0.4 0.7 G/U/No data
Position: 0 (position.label in template: 0.5')5' Position: 1 (position.label in template: 1.C) Reactivity: nanC Position: 2 (position.label in template: 2.A) Reactivity: nanA Position: 3 (position.label in template: 3.U) Reactivity: nanU Position: 4 (position.label in template: 4.C) Reactivity: nanC Position: 5 (position.label in template: 5.A) Reactivity: nanA Position: 6 (position.label in template: 6.U) Reactivity: nanU Position: 7 (position.label in template: 7.C) Reactivity: nanC Position: 8 (position.label in template: 8.U) Reactivity: nanU Position: 9 (position.label in template: 9.A) Reactivity: nanA Position: 10 (position.label in template: 10.C) Reactivity: nanC Position: 11 (position.label in template: 11.C) Reactivity: nanC Position: 12 (position.label in template: 12.A) Reactivity: nanA Position: 13 (position.label in template: 13.C) Reactivity: nanC Position: 14 (position.label in template: 14.A) Reactivity: nanA Position: 15 (position.label in template: 15.G) Reactivity: nanG Position: 16 (position.label in template: 16.A) Reactivity: nanA Position: 17 (position.label in template: 17.G) Reactivity: nanG Position: 18 (position.label in template: 18.G) Reactivity: nanG Position: 19 (position.label in template: 19.A) Reactivity: nanA Position: 20 (position.label in template: 20.A) Reactivity: nanA Position: 21 (position.label in template: 21.C) Reactivity: nanC Position: 22 (position.label in template: 22.A) Reactivity: nanA Position: 23 (position.label in template: 23.U) Reactivity: nanU Position: 24 (position.label in template: 24.G) Reactivity: nanG Position: 25 (position.label in template: 25.U) Reactivity: nanU Position: 26 (position.label in template: 26.A) Reactivity: nanA Position: 27 (position.label in template: 27.U) Reactivity: nanU Position: 28 (position.label in template: 28.G) Reactivity: nanG Position: 29 (position.label in template: 29.G) Reactivity: nanG Position: 30 (position.label in template: 30.G) Reactivity: nanG Position: 31 (position.label in template: 31.U) Reactivity: nanU Position: 32 (position.label in template: 32.G) Reactivity: nanG Position: 33 (position.label in template: 33.G) Reactivity: nanG Position: 34 (position.label in template: 34.U) Reactivity: nanU Position: 35 (position.label in template: 35.A) Reactivity: 0.5A Position: 36 (position.label in template: 36.U) Reactivity: nanU Position: 37 (position.label in template: 37.C) Reactivity: 0C Position: 38 (position.label in template: 38.A) Reactivity: 0.5A Position: 39 (position.label in template: 39.G) Reactivity: nanG Position: 40 (position.label in template: 40.U) Reactivity: nanU Position: 41 (position.label in template: 41.A) Reactivity: 0.5A Position: 42 (position.label in template: 42.U) Reactivity: nanU Position: 43 (position.label in template: 43.U) Reactivity: nanU Position: 44 (position.label in template: 44.U) Reactivity: nanU Position: 45 (position.label in template: 45.G) Reactivity: nanG Position: 46 (position.label in template: 46.G) Reactivity: nanG Position: 47 (position.label in template: 47.C) Reactivity: 0C Position: 48 (position.label in template: 48.A) Reactivity: 1A Position: 49 (position.label in template: 49.G) Reactivity: nanG Position: 50 (position.label in template: 50.U) Reactivity: nanU Position: 51 (position.label in template: 51.U) Reactivity: nanU Position: 52 (position.label in template: 52.A) Reactivity: 1A Position: 53 (position.label in template: 53.U) Reactivity: nanU Position: 54 (position.label in template: 54.U) Reactivity: nanU Position: 55 (position.label in template: 55.G) Reactivity: nanG Position: 56 (position.label in template: 56.A) Reactivity: 1A Position: 57 (position.label in template: 57.U) Reactivity: nanU Position: 58 (position.label in template: 58.U) Reactivity: nanU Position: 59 (position.label in template: 59.A) Reactivity: 0A Position: 60 (position.label in template: 60.U) Reactivity: nanU Position: 61 (position.label in template: 61.U) Reactivity: nanU Position: 62 (position.label in template: 62.G) Reactivity: nanG Position: 63 (position.label in template: 63.C) Reactivity: 0.5C Position: 64 (position.label in template: 64.C) Reactivity: 0C Position: 65 (position.label in template: 65.G) Reactivity: nanG Position: 66 (position.label in template: 66.U) Reactivity: nanU Position: 67 (position.label in template: 67.C) Reactivity: 0.5C Position: 68 (position.label in template: 68.A) Reactivity: 0.5A Position: 69 (position.label in template: 69.U) Reactivity: nanU Position: 70 (position.label in template: 70.C) Reactivity: 1C Position: 71 (position.label in template: 71.G) Reactivity: nanG Position: 72 (position.label in template: 72.U) Reactivity: nanU Position: 73 (position.label in template: 73.U) Reactivity: nanU Position: 74 (position.label in template: 74.G) Reactivity: nanG Position: 75 (position.label in template: 75.U) Reactivity: nanU Position: 76 (position.label in template: 76.A) Reactivity: 0.5A Position: 77 (position.label in template: 77.C) Reactivity: 1C Position: 78 (position.label in template: 78.U) Reactivity: nanU Position: 79 (position.label in template: 79.G) Reactivity: nanG Position: 80 (position.label in template: 80.C) Reactivity: 0C Position: 81 (position.label in template: 81.U) Reactivity: nanU Position: 82 (position.label in template: 82.U) Reactivity: nanU Position: 83 (position.label in template: 83.U) Reactivity: nanU Position: 84 (position.label in template: 84.U) Reactivity: nanU Position: 85 (position.label in template: 85.U) Reactivity: nanU Position: 86 (position.label in template: 86.G) Reactivity: nanG Position: 87 (position.label in template: 87.G) Reactivity: nanG Position: 88 (position.label in template: 88.C) Reactivity: 0C Position: 89 (position.label in template: 89.A) Reactivity: 0.5A Position: 90 (position.label in template: 90.C) Reactivity: 0.5C Position: 91 (position.label in template: 91.C) Reactivity: 0C Position: 92 (position.label in template: 92.A) Reactivity: 0A Position: 93 (position.label in template: 93.A) Reactivity: 0A Position: 94 (position.label in template: 94.A) Reactivity: 0.5A Position: 95 (position.label in template: 95.A) Reactivity: 0.5A Position: 96 (position.label in template: 96.A) Reactivity: 0A Position: 97 (position.label in template: 97.G) Reactivity: nanG Position: 98 (position.label in template: 98.C) Reactivity: 0.5C Position: 99 (position.label in template: 99.U) Reactivity: nanU Position: 100 (position.label in template: 100.C) Reactivity: 0.5C Position: 101 (position.label in template: 101.G) Reactivity: nanG Position: 102 (position.label in template: 102.G) Reactivity: nanG Position: 103 (position.label in template: 103.C) Reactivity: 0C Position: 104 (position.label in template: 104.U) Reactivity: nanU Position: 105 (position.label in template: 105.C) Reactivity: 0C Position: 106 (position.label in template: 106.C) Reactivity: 0C Position: 107 (position.label in template: 107.A) Reactivity: 1A Position: 108 (position.label in template: 108.U) Reactivity: nanU Position: 109 (position.label in template: 109.C) Reactivity: 0C Position: 110 (position.label in template: 110.G) Reactivity: nanG Position: 111 (position.label in template: 111.G) Reactivity: nanG Position: 112 (position.label in template: 112.U) Reactivity: nanU Position: 113 (position.label in template: 113.U) Reactivity: nanU Position: 114 (position.label in template: 114.C) Reactivity: 0.5C Position: 115 (position.label in template: 115.C) Reactivity: 0C Position: 116 (position.label in template: 116.G) Reactivity: nanG Position: 117 (position.label in template: 117.A) Reactivity: 1A Position: 118 (position.label in template: 118.U) Reactivity: nanU Position: 119 (position.label in template: 119.C) Reactivity: 0.5C Position: 120 (position.label in template: 120.U) Reactivity: nanU Position: 121 (position.label in template: 121.U) Reactivity: nanU Position: 122 (position.label in template: 122.G) Reactivity: nanG Position: 123 (position.label in template: 123.G) Reactivity: nanG Position: 124 (position.label in template: 124.U) Reactivity: nanU Position: 125 (position.label in template: 125.G) Reactivity: nanG Position: 126 (position.label in template: 126.C) Reactivity: 0C Position: 127 (position.label in template: 127.G) Reactivity: nanG Position: 128 (position.label in template: 128.U) Reactivity: nanU Position: 129 (position.label in template: 129.C) Reactivity: 0C Position: 130 (position.label in template: 130.G) Reactivity: nanG Position: 131 (position.label in template: 131.A) Reactivity: 1A Position: 132 (position.label in template: 132.U) Reactivity: nanU Position: 133 (position.label in template: 133.C) Reactivity: 0C Position: 134 (position.label in template: 134.A) Reactivity: 0A Position: 135 (position.label in template: 135.A) Reactivity: 0.5A Position: 136 (position.label in template: 136.A) Reactivity: 1A Position: 137 (position.label in template: 137.G) Reactivity: nanG Position: 138 (position.label in template: 138.G) Reactivity: nanG Position: 139 (position.label in template: 139.C) Reactivity: 0C Position: 140 (position.label in template: 140.U) Reactivity: nanU Position: 141 (position.label in template: 141.U) Reactivity: nanU Position: 142 (position.label in template: 142.U) Reactivity: nanU Position: 143 (position.label in template: 143.A) Reactivity: nanA Position: 144 (position.label in template: 144.A) Reactivity: nanA Position: 145 (position.label in template: 145.A) Reactivity: nanA Position: 146 (position.label in template: 146.A) Reactivity: nanA Position: 147 (position.label in template: 147.A) Reactivity: nanA Position: 148 (position.label in template: 148.A) Reactivity: nanA Position: 149 (position.label in template: 149.G) Reactivity: nanG Position: 150 (position.label in template: 150.C) Reactivity: nanC Position: 151 (position.label in template: 151.A) Reactivity: nanA Position: 152 (position.label in template: 152.A) Reactivity: nanA Position: 153 (position.label in template: 153.U) Reactivity: nanU Position: 154 (position.label in template: 154.G) Reactivity: nanG Position: 155 (position.label in template: 155.A) Reactivity: nanA Position: 156 (position.label in template: 156.G) Reactivity: nanG Position: 157 (position.label in template: 157.C) Reactivity: nanC Position: 158 (position.label in template: 158.G) Reactivity: nanG Position: 159 (position.label in template: 159.A) Reactivity: nanA Position: 160 (position.label in template: 160.U) Reactivity: nanU Position: 161 (position.label in template: 161.G) Reactivity: nanG Position: 162 (position.label in template: 162.A) Reactivity: nanA Position: 163 (position.label in template: 163.U) Reactivity: nanU Position: 164 (position.label in template: 164.G) Reactivity: nanG Position: 165 (position.label in template: 165.A) Reactivity: nanA Position: 166 (position.label in template: 166.A) Reactivity: nanA Position: 167 (position.label in template: 167.C) Reactivity: nanC Position: 168 (position.label in template: 168.C) Reactivity: nanC Position: 169 (position.label in template: 169.A) Reactivity: nanA Position: 170 (position.label in template: 170.A) Reactivity: nanA Position: 171 (position.label in template: 171.A) Reactivity: nanA Position: 172 (position.label in template: 172.G) Reactivity: nanG Position: 173 (position.label in template: 173.C) Reactivity: nanC Position: 174 (position.label in template: 174.A) Reactivity: nanA Position: 175 (position.label in template: 175.G) Reactivity: nanG Position: 176 (position.label in template: 176.3')3' 10 20 30 50 100 150


tatA-tatB-tatC-tatD



Position: 30-164, Conformation: #0







Retained alignments:


   NC_003910.7       CA.U.CA..A.A....U....AU..C..A...G....G..........A.....G.......U..U..........A.........A.....U.....U...A...U...U......A.U.G...G...............................................G.UGGAAU...C...GGAAUUUGGCA.AC.U..AGUUAU..U..........................................GU...U...G.CU.G....UG.AUU.G.UA.GUGUUAUU..AUUU...GGA....ACUAA.AA.A.A.C...U.A.C.G.UA.A.UA.U-agg.....................................ugg.-.-..---.UG..AUUU...A...GG..U..U..C..A..G..C..G....AUUAA.A....................................................G.GU.UU.U.A..A.A.A....-.--..--..-..-G....U.G.C......U.AUcG...GU.G
   NC_004347.2       UU.U.CA..-.-....-....AU..U..A...A....G..........A.....G.......G..A..........U.........A.....C.....C...U...U...C......A.U.G...G...............................................G.UGGCAU...U...AGUAUUUGGCA.AC.U..UCUUAU..C..........................................AU...C...G.CG.U....UA.AUC.G.UU.GUCUUAUU..GUUU...GGA....ACUAA.GA.A.A.U...U.A.C.G.CU.C.UU.U-............................................G.G..GUG.GU..GACU...U...AG..G..U..G..G..U.gC..A....GUUAA.G....................................................G.GC.UU.C.A..A.A.A....A.CG..CC..A..UG....U.C.U......U.CU.G...AA.G
   NC_004603.1       GU.U.UA..A.A....G....AC..C..-...C....G..........A.....G.......G..U..........A.........A.....A.....A...A...G...A......A.U.G...G...............................................G.UGGUAU...C...AGUGUUUGGCA.AC.U..UCUAAU..C..........................................AU...U...G.CU.G....UA.AUU.G.UU.GUAUUGCU..AUUC...GGA....ACUAA.GA.A.A.C..uA.C.G.U.G-.G.CA.UC............................................G.G..UGG.CG..AUCU...A...GG..U.aG..U..G..C..C..G....U-UAA.G....................................................G.GC.UU.C.A..A.A.A....A.AG..CA..A..UG....A.G.C......G.AU.G...AA.G
   NC_004917.1       UU.U.UA..U.C....A....--..-..-...-....-..........A.....A.......G..G..........A.........G.....A.....U...U...C...U......A.U.G...C...............................................A.CCCCCC...U...AGUAUUACACA.AU.U..GUUGAU..U..........................................AU...U...U.UG.C....UU.AUU.A.UU.GUGCUCCU..UUUU...GGU....GCAAA.AA.A.A.A...U.-.-.-.--.-.--.--ucccgaacu........................ugcaaaagga.-.-..---.--..---U...U...AG..G..A..A..G..U..G..G...uAUUAA.A....................................................A.AC.UU.C.A..A.A.A....A.AG..CU..G..UC....A.A.Ag...aaG.AU.G...AA.G
   NC_005090.1       CA.A.AU..U.U....U....AC..C..G...A....A..........G.....A.......A..G..........G.........A.....G.....A...G...U...U......G.U.-...A...............................................U.GGGUAUgccC...AGUAUGCCUGA.AC.U..AUUAGU..C..........................................AU...U...U.UG.G....CU.AUU.G.UU.GUUUUACU..UUUU...GGA....GCUAA.GA.A.G.A...U.U.C.C.CG.A.UC.UU............................................G.C..CAA.GG..GUCU...A...GG..U..U..C..A..G..G..A....AUCAA.G....................................................A.AU.UU.C.A..A.A.A....A.AG..CG..A..UG....A.A.A......G.AG.G...AU.G
   NC_005126.1       UC.C.UG..U.U....A....AA..U..A...G....A..........G.....G.......U..A..........A.........A.....U.....C...A...G...A......A.U.G...G...............................................G.CGGUAU...A...AGCAUUUGGCA.GU.U..ACUCAU..C..........................................AU...U...G.CG.G....UC.AUU.G.UG.GUGCUGUU..GUUC...GGC....ACGAA.UA.A.A.C...U.C.C.G.UA.C.UU.UA............................................G.G..UUC.UG..AUCU...U...GG..G..G..C..A..U..C..U....AUUAA.A....................................................G.GU.UU.U.A..A.A.A....A.GG..CG..A..UA....G.G.G......G.AU.G...AU.A
   NC_006300.1       --.U.UA..U.Cc..aA....UC..U..A...A....G..........A.....G.......G..G..........A.........A.....A.....A...U...C...C......A.U.G...G...............................................G.UGGCAU...U...AGCAUUUGGCA.AU.U..ACUUAU..U..........................................AU...U...G.UU.G....CA.AUU.A.UU.GUUUUACU..UUUC...GGU....ACUAA.AA.A.A.U...U.A.C.G.UA.C.UU.UA............................................G.G..UAC.GG..AUUU...G...GG..C..G..A..A..U..C..G....GUAAA.A....................................................G.GC.UU.C.A..A.A.A....A.AG..CA..A..UG....A.A.U......G.AA.G...AU.G
   NC_007406.1       GA.U.GA..G.C....U....CC..-..-...-....-..........-.....-.......-..-..........-.........-.....-.....-...-...-...-......-.-.-...-gucgcgagcggc......................ucaagaagaucug-.--GGGC...C...AGUAUUCGGCG.-C.U..CAUCAU..U..........................................GC...C...G.CC.G....UC.AUA.C.UC.GUGCUCGU..CGCU...GUC....GGCGG.CU.G.G.-...-.-.-.-.--.-.--.--cguggauaccaguau............cuccagacccagaagg.-.-..---.--..---C...C...GC..C..G..A..G..G..C..C....AGUUC.A....................................................G.CU.UU.UgA..A.G.C....G.GC..GG..C..AGc..gC.U.G......G.CU.G...AU.C
   NC_007712.1       CG.A.GU..U.U....U....AC..C..C...C....Uuu.....uguG.....A.......G..G..........C.........A.....A.....A...G...U...U......A.U.G...G...............................................G.UGGUAU...U...AGCAUUACACA.GU.U..ACUGAU..C..........................................AU...U...G.CG.U....CU.AUC.G.UG.GUGGUGUU..GUUC...GGC....ACCAA.GA.A.A.C...U.G.C.G.CG.G.CC.UG............................................G.G..AUC.GG..AUUU...G...GG..C..G..C..C..U..C..G....AUUAA.A....................................................G.GC.UU.U.A..A.A.A....A.AU..CC..A..UG....A.G.C......G.AG.G...AU.G
   NC_007963.1       --.-.--..-.-....-....-C..C..G...U....U..........C.....C.......C..G..........A.........G.....C.....A...U...G...-......-.-.-...-aaggagagcu...........................cccauguuagG.UGGAAU...C...AGUAUCUGGCA.AC.U..GCUGAU..C..........................................GU...U...C.UC.G....GC.AUC.G.UC.AUCCUGAU..CUUC...GGA....ACCAA.GA.A.G.C...UgC.G.C.AA.U.C-.UC............................................G.G..CAG.CG..AUCU...G...GG..A.gG..C..G..C..C..G....-UCAA.G....................................................G.GC.UU.C.A..A.G.A....G.CG..CG..G..UC....G.G.C......G.AG.G...AA.G
   NC_008260.1       --.U.UA..A.Cu..uU....UU..C..G...G....A..........G.....A.......G..A..........A.........Au..ucC.....A...U...G...U......-.-.-...-u............................................uuC.CGGUAU...C...AGCAUUUGGCA.GC.U..AUUGAU..U.......................................cucCU...G...G.CC.A....UC.---.G.UG.GUCCUGUU..AUUC...GGC....ACGAA.AA.A.A.C...U.A.C.G.CA.A.CA.UC............................................G.G..--C.GG..UGAU...U...UG..G..G..C..G..G..CgcG....GUGAA.A....................................................G.GC.UU.C.A..A.A.A....G.CG..CC..A..UG....A.A.A......G.AU.G...GC.G
   NC_008700.1       CU.U.AA..U.U....U....UG..U..A...G....A..........G.....A.......G..G..........A.........A.....U.....U..cU...U...C......A.U.G...G...............................................G.UGGUAU...C...AGUAUUUGGCA.AU.U..GCUCAU..C..........................................AU...C...G.CA.C....UU.AUC.G.UG.GUUUUGCU..GUUU...GGC....ACCAA.GA.A.G.U...UgC.G.U.-U.C.UC.UG............................................G.G..UGG.CG..ACCU...C...GG..U..G..G..C..G..C..U....AUCAA.G....................................................G.GA.UU.C.A..A.A.A....A.CG..CC..A..UG....U.C.U......G.AU.G...AA.G
   NC_009092.1       --.-.--..-.A....C....AU..C..A...A....G..........A.....G.......G..A..........A.........A.....G.....U...U...A...C......A.U.G...G...............................................G.UGGCAU...C...AGUAUUUGGCA.AC.U..UCUUAU..C..........................................AU...U...G.CU.U....UA.AUC.G.UU.GUUUUGCU..UUUC...GGA....ACUAA.GA.A.A.U...UgC.G.C.-U.C.UC.UA............................................G.G..UGG.UG..ACCU...C...GG..C.gG..U..G..C..U..G....-UUAA.A....................................................G.GC.UU.C.A..A.G.A....A.UG..CU..A..UG....U.C.U......U.CU.G...AA.G
   NC_009446.1       CU.U.AA..U.U....U....UU..U..C...A....A..........G.....A.......G..A..........G.........G.....A.....A...U...A...A......A.U.U...A...............................................U.GGGCGC...C...AGUCCAGUUCA.AU.U..AUUG--..-..........................................AU...U...G.UG.C....UU.UUU.A.UU.GCGGUGCU..UGUU...UUC....GGCGG.AA.A.A.CgguU.G.C.G.GA.C.UU.UG............................................G.G..UUC.UG..AUGU...U...GG..C..G..C..G..G..C..A....AUUAA.A....................................................G.GU.UU.U.A..A.A.G....A.AG..CG..A..UG....A.A.A......G.--.-...AA.G
   NC_009792.1       CA.U.CA..U.C....U....AU..C..A...C....A..........G.....A.......G..G..........A.........A.....C.....U...C...G...U......A.U.G...G...............................................G.UGGUAU...C...AGUAUUUGGCA.GU.U..GUUGAU..C..........................................AU...U...G.CC.G....UC.AUC.G.UU.GUACUGCU..AUUU...GGC....ACCAA.AA.A.G.C...U.C.G.G.CU.C.CA.UC............................................G.G..UUC.CG..AUCU...U...GG..C..G..C..G..U..C..C....AUUAA.A....................................................G.GC.UU.C.A..A.A.A....A.AG..CG..A..UG....A.G.C......G.AU.G...AU.G
   NC_009831.1       CA.G.UA..U.U....U....AA..A..A...U....U..........G.....A.......G..G..........A.........U.....U.....A...C...C...C......A.U.G...G...............................................G.UGGCAU...U...AGUAUUUGGCA.AC.U..UCUUAU..C..........................................GU...U...G.CU.U....UA.AUC.G.UA.GUUUUAUU..AUUU...GGA....ACAAA.AA.A.A.C...U.U.C.G.UU.C.AU.UA............................................G.G..UGG.UG..ACCU...A...GG..U.gG..C..G..C..A..-....GUUAA.A....................................................G.GC.UU.C.A..A.G.A....G.CG..CG..A..UG....U.-.C......-.-U.U...CU.G
   NC_009901.1       CA.G.UA..U.C...uA....AU..C..A...A....G..........A.....G.......G..A..........U.........U.....C.....A...U...C...C......A.U.G...G...............................................G.UGGCAU...U...AGUAUUUGGCA.AC.U..UCUUAU..C..........................................AU...U...G.CU.U....UA.AUU.G.UC.GUAUUAUU..GUUU...GGA....ACUAA.GA.A.G.U...U.-.-.-.--.-.--.--acguucacu.........................aggcggcga.-.-..---.--..--UU...U...AG..G..U..G..G..U.gC..A....GUUAA.G....................................................G.GC.UU.U.A..AgA.A....C.GC..CA..-..-U....G.U.C......-.-U.U...CU.G
   NC_009922.1       CA.U.UG..U.A....U....UG..A..C...C....-..........-.....-.......A..G..........U.........A.....C.....U...U...C...U......A.U.G...C...............................................U.GGGUGG...C...CUAAUGUGGCC.CG.U..AGAGAU..U..........................................AU...U...A.CC.A....AU.AAA.G.UA.UUACUAUU..UUUA...GCA....AGAUU.GA.C.G.C...C.-.-.-.--.-.--.--..........................................u.-.-..---.--..--CA...A...UU..U..U..G..G..G..C..G....AUGGA.G....................................................G.CC.UU.U.A..A.U.A....A.AC..UG..A..UG....U.A.U......U.AC.A...AU.G
   NC_009937.1       CG.U.CC..U.C....A....--..-..-...C....G..........G.....A.......G..G..........G.........U.....G.....A...G...U...U......A.U.G...G...............................................G.UUCGAU...G...AGCAUCUGGCA.CU.G..GAUCG-..U..........................................GG...U...G.CU.G....GC.CGU.G.GU.G---CUCC..UUCU...GUU....-----.--.-.-.-...-.-.-.-.--.-.--.--cggucgcggcaagaucuccg...accugaugggcgacguggcg.-.-..---.--..----...-...--..-..A..A..G..G..G..C....AUCAA.G....................................................U.CC.UU.C.A..A.G.A....A.GG..GC..A..UG....G.C.C......G.AG.G...AC.G
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   NZ_LR134510.1     --.U.UA..U.U....U....--..U..A...U....G..........G.....A.......G..G..........A.........A.....C.....A...U...U...-......A.U.-...-guu.........................................cgc-.AGGCGU...U...AGUAUUUGGCA.AU.U..ACUUAUcuU..........................................AU...U...A.C-.-....UU.GUU.G.UU.GUUGUAAU..UUUU...GGU....ACCAA.AA.A.A.C...U.U.C.G.UA.C.CA.UU............................................G.G..UUC.AG..AUCU...U...GG..U..G..G..U..G..C..C....GUACG.A....................................................G.AU.UU.C.A..A.A.A....A.AG..CA..A..UG....A.G.U......G.AA.A...AC.G
   NZ_LR134515.1     --.-.--..-.-....-....-A..C..A...Aa.aaA..........G.....A.......G..G..........A.........G.....C.....C...U...G...U......A.U.G...G...............................................G.UGGCAU...U...AGCAUUUGGCA.AU.U..ACUGAU..U..........................................AU...C...G.UC.G....CA.AUU.A.UC.GUAUUAUU..AUUC...GGU....ACGAA.AA.A.A.U...U.A.C.G.UA.C.GU.UA............................................G.G..UAC.GG..AUUU...A...GG..U..G..A..A..U..C..C....GUAAA.A....................................................G.GC.UU.U.A..A.A.A....A.AG..CG..A..UG....G.C.G......G.AU.G...AC.A
   NZ_LR134531.1     CG.C.UA..U.C....U....AA..U..G...A....A..........G.....A.......G..G..........C.........A.....U.....A...U..cA...C......A.U.G...G...............................................G.UGGAAU...U...AGCAUUUGGCA.AU.U..ACUGAU..U..........................................AU...U...G.UA.G....CG.AUU.G.UC.GUAUUGUU..GUUU...GGA....ACGAA.GA.A.G.C...U.A.C.G.UA.C.CC.UC............................................G.G..UUC.CG..AUCU...U...GG..C..G..C..A..U..C..C....GUCAA.A....................................................G.GC.UU.C.A..A.G.A....A.AG..CC..A..UG....A.G.C......G.AC.G...AU.G
   NZ_LR699007.1     CC.A.UA..U.C....A....AU..U..U...G....A..........G.....-.......G..U..........A.........A.....A.....A...C...U...A......A.U.G...G...............................................C.CGGUAU...U...AAUAUUUGGCA.AU.U..GUUAAU..U..........................................AU...U...G.CU.G....UG.AUU.G.UU.GUACUCCU..GUUC...GGA....ACAAA.CA.A.A.C...U.C.C.G.UA.C.UC.UG............................................G.G..AUC.UG..AUUU...A...GG..U..G..C..A..U..C..U....AUCAA.A....................................................G.GC.UU.U.A..A.A.A....A.AG..CU..A..UC....G.G.U......G.AU.G...AA.G
   NZ_LR861803.1     CU.U.CU..U.C....U....UC..A..G...C....A..........A.....G.......C..G..........A.........G.....C.....A...G...A...U.....cA.U.G...G...............................................G.CGGUUU...C...AGCAUUUGGCA.CU.G..GCUGAU..C..........................................-G...U...G.CU.G...gUG.AUC.G.UG.UUGCUGGU..GUUC...GGU....ACCAA.GC.G.G.C...U.C.A.C.CA.G.CG.GU............................................G.C..CAA.GG..AUCU...C...GG..C..A..G..C..G..C..G....GUCAA.G....................................................G.AA.UUcA.A..G.A.A....A.GG..CA..-..UG....C.A.C......G.AC.G...AG.G
   NZ_LS483422.1     --.-.--..-.-....-....--..-..-...-....-..........-.....-.......G..A..........A.........U.....C.....A...A...-...-......-.-.-...-cuauug..................................caauggc-.UGCUUU...CgguAGUCCUUGGCA.AC.U..CAUUAU..U..........................................AU...C...G.CU.U....UG.CUU.A.UU.AUUUUGAU..UUUC...GGC....ACCAA.AA.A.A.U...U.A.C.G.UU.C.UU.UA............................................G.G..UUC.GG..AUUU...A...GG..U..G..A..A..U..C..A....CUCAA.A....................................................G.GC.UU.U.A..A.A.A....A.AG..CA..A..UG....G.G.U......G.AU.G...AC.G
   NZ_LS483429.1     UC.U.UU..U.U....U....AC..A..G...A....A..........C.....G.......G..A..........G.........U.....U.....U...A...U...U......A.U.G...U...............................................U.UGGUUUaucC...CCCGCUCAACU.GA.U..UAUUUU..A..........................................UU...A...G.UC.G....UU.AUU.-.--.UUGUUGAU..UUUU...GGC....ACGAA.AA.A.A.U...U.A.A.G.AA.A.UG.CU............................................G.G..CUC.AG..AUCU...U...GG..C..G..C..A..G..C..A....GUGAA.A....................................................G.GU.UU.C.A..A.A.A....A.GG..CG..A..UG....A.-.-......A.AG.A...AG.A
   NZ_LS483443.1     --.-.CU..U.U....U....AU..A..G...A....A.........uG.....A.......C..G..........A........gG.....U.....U...U...U...U......A.U.G...G...............................................G.CGGUAU...U...AGCAUUUGGCA.AU.U..AGCGAU..U..........................................UU...A...G.UC.U....UA.AUU.A.UC.GUGUUACU..GUUC...GGU....ACGAA.AA.A.A.U...U.A.C.G.UA.C.UU.UA............................................G.G..UAC.UG..AUUU...A...GG..U..G..A..A..U..C..A....GUAAA.A....................................................G.GC.UU.C.A..A.A.A....A.AG..CC..A..UG....A.A.C......G.AA.G...AA.G
   NZ_LS483470.1     --.-.--..A.C...gA....UU..U..A...U....A..........G.....A.......G..G..........C.........A.....U.....A...U...Ua.cA......A.U.G...G...............................................G.UGGAAU...U...AGUAUUUGGCA.AC.U..GCUUAU..U..........................................AU...U...G.UU.G....CA.AUU.G.UC.GUGCUGCU..GUUC...GGA....ACGAA.GA.A.A.C...U.G.C.G.CA.C.AC.UA............................................G.G..AUC.GG..AUCU...U...GG..C..G..C..A..U..C..G....GUGAA.A....................................................G.GC.UU.U.A..A.G.A....A.AG..CC..A..UG....A.G.U......G.AA.G...AC.G
   NZ_LT615367.1     GC.U.CA..CaU....U....AU..C..-...-....A..........G.....G.......U..A..........G.........G.....U.....A...A...G...U......A.U.G...G...............................................A.AGGUAU...C...AGUAU-UGCCAaAC.U..CUUAGU..G..........................................AU...U...G.GC.G....CU.UUG.A.UU.GUUCUGCU..GUUU...GGU....ACAAA.UA.A.G.-...-.C.U.G.CG.C.AG.UC............................................U.G..GGC.AGugAUCU...G...GG..G..A..C..G..G..C..G....AUUAA.A....................................................G.GG.UU.C.A..A.A.A....A.AG..CG..A..UG....A.G.U......G.AU.G...AG.C
   NZ_LT853882.1     CU.U.CU..U.U....U....UC..A..G...C....A..........A.....G.......C..G..........A.........G.....C.....G...G...A...U.....cA.U.G...G...............................................G.CAGUUU...C...AGCAUCUGGCA.CU.G..GCUGAU..C..........................................-G...U...G.CU.G...gUG.AUC.G.UG.UUGCUGGU..GUUC...GGU....ACCAA.GC.G.G.C...U.C.A.C.CA.G.CG.GU............................................G.C..CAA.AG..ACCU...C...GG..C..A..G..C..G..C..G....GUCAA.A....................................................G.AA.UUcA.A..G.A.A....A.GG..CA..-..UG....C.A.C......G.AC.G...AU.G
   NZ_LT906448.1     CA.U.UU..U.Uu..aA....AC..A..A...A....G..........A.....A.......G..G..........A.........A.....A.....A...A...U...U......A.U.G...G...............................................G.CGGUAU...C...AGCAUUUGGCA.AC.U..ACUUAU..U..........................................AU...U...G.UC.G....CA.AUU.G.UU.GUUUUAUU..AUUC...GGA....ACAAA.AA.A.A.U...U.A.A.G.AA.C.UU.UA............................................G.G..CUC.AG..AUUU...G...GG..A..G..A..G..U..C..U....GUUAA.A....................................................G.GU.UU.C.A..A.A.A....A.AG..CA..A..UG....U.-.C......-.-U.G...AU.G
   NZ_LT906463.1     UU.U.CA..U.U....U....AA..U..U...U....A..........A.....U.......G..G..........A.........G.....U.....U...U...-...-......-.-.-...-uuuau.....................................guuug-.------...-...-----------.--.-..------..-guuuauccccggcaca......aaugauuauuuuguuag...--...-...-.--.-....UG.GUG.G.UU.UUAUUGGU..UUUC...GGU....ACCAA.AA.A.A.U...U.A.C.G.UA.A.UG.CA............................................G.G..UUC.GG..AUUU...A...GG..C..G..C..C..G..C..G....GUAAA.A....................................................G.GC.UU.U.A..A.A.A....A.AG..CA..A..UG....U.C.C......G.AU.G...AG.G
   NZ_LT906479.1     --.-.UU..U.U....A....AA..A..U...U....A..........G.....A.......G..G..........U.........A.....A.....U...U...G..gA......A.U.G...G...............................................G.CGGUAU...U...AGUAUUACGCA.AU.U..GUUGAU..C..........................................AU...C...G.CA.G....UG.AUC.G.UG.GUGCUGCU..GUUC...GGC....ACCAA.AA.A.G.C...U.C.C.G.CA.C.GC.UG............................................G.G..CUC.CG..AUCU...C...GG..U..G..C..A..U..C..A....AUCAA.G....................................................G.GU.UU.C.A..A.A.A....A.GG..CG..A..UC....G.G.C......G.AC.G...AA.A


   Structure         ((.(.((..(.(.........((..(..(...(............................................................................................................................................).))))...............(((((.((.......................................................))...)...).)).)...........(.((.....((((..((((....((.....((((..............(.(.(....(.(................................................).)....).)).....)...)...)).....)..)..(..(..(..................................................................).)).........).).)....).))..))...........).).)......).)).)...)).)


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tatA-tatB-tatC-tatD



Position: 30-164, Conformation: #0







97% 90% 75% 50% Nucleotide present N N N Nucleotide identify E < 0.1 Base-pair covariation E < 0.05 Helix-level covariation 97% 90% 75%

R R R R Y G G A U Y A G Y A U Y U G G C A R Y U R Y U A U Y R U Y Y R Y A U Y R U R U Y U R Y U U U Y G G Y A C A A R A A R Y U Y R R G A Y Y U G G R R C R U A A R G G Y U U Y A A R A A R G C R U R R Y G A G A R 5'