ssb



Position: 361-490, Conformation: #1







DMS reactivity > 1.0 0.0 0.4 0.7 G/U/No data
Position: 0 (position.label in template: 0.5')5' Position: 1 (position.label in template: 1.C) Reactivity: nanC Position: 2 (position.label in template: 2.A) Reactivity: nanA Position: 3 (position.label in template: 3.G) Reactivity: nanG Position: 4 (position.label in template: 4.G) Reactivity: nanG Position: 5 (position.label in template: 5.U) Reactivity: nanU Position: 6 (position.label in template: 6.U) Reactivity: nanU Position: 7 (position.label in template: 7.U) Reactivity: nanU Position: 8 (position.label in template: 8.A) Reactivity: nanA Position: 9 (position.label in template: 9.U) Reactivity: nanU Position: 10 (position.label in template: 10.A) Reactivity: nanA Position: 11 (position.label in template: 11.U) Reactivity: nanU Position: 12 (position.label in template: 12.C) Reactivity: nanC Position: 13 (position.label in template: 13.G) Reactivity: nanG Position: 14 (position.label in template: 14.A) Reactivity: nanA Position: 15 (position.label in template: 15.A) Reactivity: nanA Position: 16 (position.label in template: 16.G) Reactivity: nanG Position: 17 (position.label in template: 17.G) Reactivity: nanG Position: 18 (position.label in template: 18.U) Reactivity: nanU Position: 19 (position.label in template: 19.C) Reactivity: nanC Position: 20 (position.label in template: 20.A) Reactivity: nanA Position: 21 (position.label in template: 21.G) Reactivity: nanG Position: 22 (position.label in template: 22.C) Reactivity: nanC Position: 23 (position.label in template: 23.U) Reactivity: nanU Position: 24 (position.label in template: 24.G) Reactivity: nanG Position: 25 (position.label in template: 25.C) Reactivity: nanC Position: 26 (position.label in template: 26.G) Reactivity: nanG Position: 27 (position.label in template: 27.U) Reactivity: nanU Position: 28 (position.label in template: 28.A) Reactivity: nanA Position: 29 (position.label in template: 29.C) Reactivity: nanC Position: 30 (position.label in template: 30.C) Reactivity: nanC Position: 31 (position.label in template: 31.C) Reactivity: nanC Position: 32 (position.label in template: 32.G) Reactivity: nanG Position: 33 (position.label in template: 33.U) Reactivity: nanU Position: 34 (position.label in template: 34.A) Reactivity: 0A Position: 35 (position.label in template: 35.A) Reactivity: 0.5A Position: 36 (position.label in template: 36.A) Reactivity: 1A Position: 37 (position.label in template: 37.U) Reactivity: nanU Position: 38 (position.label in template: 38.G) Reactivity: nanG Position: 39 (position.label in template: 39.G) Reactivity: nanG Position: 40 (position.label in template: 40.A) Reactivity: 0.5A Position: 41 (position.label in template: 41.C) Reactivity: 0C Position: 42 (position.label in template: 42.C) Reactivity: 0C Position: 43 (position.label in template: 43.G) Reactivity: nanG Position: 44 (position.label in template: 44.A) Reactivity: 0A Position: 45 (position.label in template: 45.U) Reactivity: nanU Position: 46 (position.label in template: 46.C) Reactivity: 0C Position: 47 (position.label in template: 47.A) Reactivity: 1A Position: 48 (position.label in template: 48.A) Reactivity: 0.5A Position: 49 (position.label in template: 49.U) Reactivity: nanU Position: 50 (position.label in template: 50.C) Reactivity: 0C Position: 51 (position.label in template: 51.C) Reactivity: 0C Position: 52 (position.label in template: 52.G) Reactivity: nanG Position: 53 (position.label in template: 53.G) Reactivity: nanG Position: 54 (position.label in template: 54.U) Reactivity: nanU Position: 55 (position.label in template: 55.C) Reactivity: 0C Position: 56 (position.label in template: 56.A) Reactivity: 0.5A Position: 57 (position.label in template: 57.G) Reactivity: nanG Position: 58 (position.label in template: 58.G) Reactivity: nanG Position: 59 (position.label in template: 59.A) Reactivity: 0A Position: 60 (position.label in template: 60.U) Reactivity: nanU Position: 61 (position.label in template: 61.C) Reactivity: 0C Position: 62 (position.label in template: 62.G) Reactivity: nanG Position: 63 (position.label in template: 63.C) Reactivity: 0C Position: 64 (position.label in template: 64.U) Reactivity: nanU Position: 65 (position.label in template: 65.A) Reactivity: 1A Position: 66 (position.label in template: 66.C) Reactivity: 0C Position: 67 (position.label in template: 67.A) Reactivity: 0A Position: 68 (position.label in template: 68.C) Reactivity: 0C Position: 69 (position.label in template: 69.C) Reactivity: 0C Position: 70 (position.label in template: 70.A) Reactivity: 0A Position: 71 (position.label in template: 71.C) Reactivity: 0C Position: 72 (position.label in template: 72.A) Reactivity: 1A Position: 73 (position.label in template: 73.G) Reactivity: nanG Position: 74 (position.label in template: 74.A) Reactivity: 1A Position: 75 (position.label in template: 75.A) Reactivity: 1A Position: 76 (position.label in template: 76.G) Reactivity: nanG Position: 77 (position.label in template: 77.U) Reactivity: nanU Position: 78 (position.label in template: 78.C) Reactivity: 0.5C Position: 79 (position.label in template: 79.G) Reactivity: nanG Position: 80 (position.label in template: 80.U) Reactivity: nanU Position: 81 (position.label in template: 81.G) Reactivity: nanG Position: 82 (position.label in template: 82.G) Reactivity: nanG Position: 83 (position.label in template: 83.U) Reactivity: nanU Position: 84 (position.label in template: 84.G) Reactivity: nanG Position: 85 (position.label in template: 85.A) Reactivity: 1A Position: 86 (position.label in template: 86.A) Reactivity: 0.5A Position: 87 (position.label in template: 87.C) Reactivity: 0C Position: 88 (position.label in template: 88.G) Reactivity: nanG Position: 89 (position.label in template: 89.U) Reactivity: nanU Position: 90 (position.label in template: 90.U) Reactivity: nanU Position: 91 (position.label in template: 91.G) Reactivity: nanG Position: 92 (position.label in template: 92.G) Reactivity: nanG Position: 93 (position.label in template: 93.C) Reactivity: 0C Position: 94 (position.label in template: 94.G) Reactivity: nanG Position: 95 (position.label in template: 95.G) Reactivity: nanG Position: 96 (position.label in template: 96.C) Reactivity: 0C Position: 97 (position.label in template: 97.A) Reactivity: 0A Position: 98 (position.label in template: 98.C) Reactivity: 0C Position: 99 (position.label in template: 99.C) Reactivity: 0C Position: 100 (position.label in template: 100.A) Reactivity: 1A Position: 101 (position.label in template: 101.U) Reactivity: nanU Position: 102 (position.label in template: 102.G) Reactivity: nanG Position: 103 (position.label in template: 103.C) Reactivity: 0C Position: 104 (position.label in template: 104.A) Reactivity: 1A Position: 105 (position.label in template: 105.G) Reactivity: nanG Position: 106 (position.label in template: 106.A) Reactivity: 1A Position: 107 (position.label in template: 107.U) Reactivity: nanU Position: 108 (position.label in template: 108.G) Reactivity: nanG Position: 109 (position.label in template: 109.C) Reactivity: 0C Position: 110 (position.label in template: 110.U) Reactivity: nanU Position: 111 (position.label in template: 111.G) Reactivity: nanG Position: 112 (position.label in template: 112.G) Reactivity: nanG Position: 113 (position.label in template: 113.G) Reactivity: nanG Position: 114 (position.label in template: 114.U) Reactivity: nanU Position: 115 (position.label in template: 115.G) Reactivity: nanG Position: 116 (position.label in template: 116.G) Reactivity: nanG Position: 117 (position.label in template: 117.U) Reactivity: nanU Position: 118 (position.label in template: 118.C) Reactivity: 0C Position: 119 (position.label in template: 119.G) Reactivity: nanG Position: 120 (position.label in template: 120.U) Reactivity: nanU Position: 121 (position.label in template: 121.C) Reactivity: 0C Position: 122 (position.label in template: 122.A) Reactivity: 0A Position: 123 (position.label in template: 123.G) Reactivity: nanG Position: 124 (position.label in template: 124.G) Reactivity: nanG Position: 125 (position.label in template: 125.G) Reactivity: nanG Position: 126 (position.label in template: 126.U) Reactivity: nanU Position: 127 (position.label in template: 127.G) Reactivity: nanG Position: 128 (position.label in template: 128.G) Reactivity: nanG Position: 129 (position.label in template: 129.U) Reactivity: nanU Position: 130 (position.label in template: 130.G) Reactivity: nanG Position: 131 (position.label in template: 131.G) Reactivity: nanG Position: 132 (position.label in template: 132.C) Reactivity: 0C Position: 133 (position.label in template: 133.G) Reactivity: nanG Position: 134 (position.label in template: 134.C) Reactivity: 1C Position: 135 (position.label in template: 135.U) Reactivity: nanU Position: 136 (position.label in template: 136.C) Reactivity: 0C Position: 137 (position.label in template: 137.C) Reactivity: 0C Position: 138 (position.label in template: 138.G) Reactivity: nanG Position: 139 (position.label in template: 139.G) Reactivity: nanG Position: 140 (position.label in template: 140.C) Reactivity: nanC Position: 141 (position.label in template: 141.A) Reactivity: nanA Position: 142 (position.label in template: 142.G) Reactivity: nanG Position: 143 (position.label in template: 143.G) Reactivity: nanG Position: 144 (position.label in template: 144.U) Reactivity: nanU Position: 145 (position.label in template: 145.G) Reactivity: nanG Position: 146 (position.label in template: 146.G) Reactivity: nanG Position: 147 (position.label in template: 147.C) Reactivity: nanC Position: 148 (position.label in template: 148.A) Reactivity: nanA Position: 149 (position.label in template: 149.A) Reactivity: nanA Position: 150 (position.label in template: 150.U) Reactivity: nanU Position: 151 (position.label in template: 151.A) Reactivity: nanA Position: 152 (position.label in template: 152.U) Reactivity: nanU Position: 153 (position.label in template: 153.C) Reactivity: nanC Position: 154 (position.label in template: 154.G) Reactivity: nanG Position: 155 (position.label in template: 155.G) Reactivity: nanG Position: 156 (position.label in template: 156.U) Reactivity: nanU Position: 157 (position.label in template: 157.G) Reactivity: nanG Position: 158 (position.label in template: 158.G) Reactivity: nanG Position: 159 (position.label in template: 159.U) Reactivity: nanU Position: 160 (position.label in template: 160.G) Reactivity: nanG Position: 161 (position.label in template: 161.G) Reactivity: nanG Position: 162 (position.label in template: 162.U) Reactivity: nanU Position: 163 (position.label in template: 163.C) Reactivity: nanC Position: 164 (position.label in template: 164.A) Reactivity: nanA Position: 165 (position.label in template: 165.G) Reactivity: nanG Position: 166 (position.label in template: 166.C) Reactivity: nanC Position: 167 (position.label in template: 167.C) Reactivity: nanC Position: 168 (position.label in template: 168.G) Reactivity: nanG Position: 169 (position.label in template: 169.C) Reactivity: nanC Position: 170 (position.label in template: 170.A) Reactivity: nanA Position: 171 (position.label in template: 171.3')3' 10 20 30 50 100 150


ssb



Position: 361-490, Conformation: #1







Retained alignments:


   NC_002939.5       CAUCGAGGGGCGGCUCCAGACCCGCAAGUGGCAGG..A...C...A...AGGA...............CGGCCG.C..G.A.CCGCUGGACCACCGAGG.UG...............................................GU...G.G.G....C.....gA.GC......G..--...-...-..-...-...--...--G....A...UGCA...G...A...U...................................................................GCUC......GGC......---..---......-...--...G............GC...AA.G.........G.G..C...G...A............-.-..-G............G...G..G...G....G....................C.G...G..C....G.G...AC..................GC.G.C.A.G...GCG.G...-....--.-.......................................ACGC
   NC_003317.1       UAUCGAAGGCGCGCUCCAGACCCGCAAGUGGCAGG..A...U...C...AAAA...............CGGCAA.U..G.A.CCGUUAUUCAACGGAAA.UC...............................................GUg.cU.G.C...aA......A.AA......U..UC...C...G..U...G...GA...GAG....C...UUCA...A...A...U...................................................................GCUC......GAC......AGC..CGC......A...GC...G............AA...GG.C.........A.G..C...G...A............-.-..-G............G...G..C...C....G....................U.U...C..C....U.U...CG..................GC.G.G.U.G...GUG.G...-....CA.A.......................................CCGC
   NC_003910.7       UCUUGAAGGAUCUUUGCAAACGCGUAAGUGGACCA..A...C...C...AACA...............AGGUCA.A..G.A.UCAAUAUACGACUGAAA.UC...............................................GU...A.U.U....A......C.AG......G..GC...U...U..UaauG...GC...GUA....A...UGCA...A...A...U........................guuagaugga.......................aagucgucuc----......---......---..-AA......G...GU...C............AG...GG.C.........G.G..U...G...G............U.U..UU............G...C..U...A....A....................-.-...U..C....A.A...GG..................AC.A.A.C.A...GCA.A...A...gUG.G.......................................UGG-
   NC_003911.12      UCUGGAGGGCCAGUUGCAGACGCGCAAAUGGCAGG..A...C...C...AGUC...............CGGCCA.G..G.A.CCGCUAUUCCACCGAGG.UG...............................................GU...G.C.U....G......C.AG......G..GG...U...U..U...G...GC...GCA....A...CGCUgguG...A...U...................................................................GCUC......GAC......GGG..CGC......G...GC...G............AA...GG.C.........G.G..C...G...G............U.G.gCG............G...C..G...G....Cu..................uU.G...G..C....G.G...CG..................GU.C.A.G.G...GCG.G...-....CG.G.......................................CGAC
   NC_004347.2       CCUCGAAGGUAAAUUGCAAACCCGUAAGUGGAAAG..A...C...C...AAAG...............UGGCCA.A..G.A.CCGUUACUCAACGGAAG.UG...............................................GU...G.A.U....U......G.AU......C..AA...A...G..C...G...GU...AGC....A...UGCA...A...A...U...................................................................GCUA......GGU......AGC..CGC......-...--...A............AC...CA.A.........G.G..U...G...G............U.C..AA............G...-..-...-....G....................U.G...C..C...cC.A...AU..................GG.G.G.G.G...GAU.G...C....CA.-.......................................CAA-
   NC_004578.1       CAUCGAAGGCAAGCUGCAGACCCGCGAAUGGG---..A...A...A...AAGA...............CGGCAU.C..A.A.GCGCUACACCACUGAAA.UC...............................................GU...C.G.U....C......G.AC......A..UG...C...A..A...G...GC...ACC....A...UGCA...A...C...U...................................................................GCUG......GGC......GGC..CGU......C...CA...C............AG...GG.C.........G.A..C...G...C............U.C..AA............-...C..A...A....G....................-.-...G..U....C.A...GG..................GC.G.G.U.G...GCG.G...-....CA.A.......................................CUAC
   NC_004603.1       CGUUGAAGGCCAACUUCAAACUCGUAAAUGGCAAG..A...C...C...AAAG...............UGGCCA.A..G.A.UCGCUACUCAACAGAAG.UU....g........................................ugGU...U.C.A....A......G.GU......U..UC...A...A..U...G...GU...GUA....A...UGCA...A...A...U...................................................................GCUU......GGU......GGC..CGU......G...CU...C............AA...GG.U.........G.G..C...G...C............U.C..CU............G...C..A...A....U....................G.G...G..C....G.G..uCA..................AC.A.A.C.A...GCA.G...C....AA.-.......................................----
   NC_004757.1       UAUCGAAGGCCGCCUGCAAACACGCAAAUGGACCG..A...U...A...AAUC...............CAACGU.G..G.A.GCGCUAUACCACCGAAA.UC...............................................GU...C.G.C....G......G.AU......-..--...-...-..-...-...--...CGC....A...UGCA...A...A...U...................................................................GCUG......G--......---..---......-...--...-............GA...--.-.........G.G..C...C...G............U.U..CG............G...G..A...G....G....................C.G...G..C....A.G...CU..................AU.G.A.U.Cc.uCCG.G...C....CG.A.......................................CCGG
   NC_005126.1       UAUUGAAGGUUCUCUGCAAACCCGUAAAUGGCAGG..A...U...C...AGAA...............CGGUCA.A..G.A.GCGUUACACCACGGAAG.UA...............................................GU...G.G.U....A......A.AC......A..UG...G...G..C...G...GU...ACC....A...UGCA...A...A...U...................................................................GUUG......GGU......GGU..CGU......G...CU...G............GU...GG.U.........G.G..U...A...G............U.U..UCc..........aGg.aU..A...G....C....................C.A...A..C....A.A...UC..................AC.A.A.G.G...CGG.A...G....--.-.......................................----
   NC_005966.1       UAUUGAAGGUUCAUUGCGUACACGCCAGUGGACAG..A...C...C...AGAA...............UGGUCA.G..G.A.GCGUUAUACCACCGAAAuUC...............................................GU...G.G.U....G......A.CC......A..--...-...-..-...-...--...--G....A...UGCA...A...A...U...................................................................GCUA......GAU......ACA..CGU......U...C-...-............-A...CA.A.........G.G..C...G...A............U.C..AG............C...C..A...A....U....................G.A...G..C....G.G...UG..................GU.A.A.C.G...AUU.U...U....AA.U.......................................CAG-
   NC_006513.1       CGUCGAAGGCCGGCUGCAGACGCGCAAGUGGCAGG..A...C...A...AGGA...............AGGGCA.G..G.A.CCGCUACACGACCGAGA.UC...............................................--...-.-.-....-......C.GC......G..GC...G...A..C...G...AG...---....A...UGAA...G...A...U...................................................................GCUC......GGU......UCG..CGU......C...AG...G............GC...GC.G.........G.G..U...G...A............U.G..CA............U...C..G...G....G....................U.C...G..C....C.A...GU..................AC.G.A.C.G...CG-.-...-....--.-.......................................----
   NC_007204.1       UAUUGAAGGCAGCUUGCGCACCCGUAAAUAUCAAG..A...U...C...CCAA...............UGGACA.A..G.A.CCGUUAUAUUACUGAAAuUC...............................................GU...G.C.U....G......A.AC......A..--...-...-..-...-...--...--A....A...UGCA...G...A...U...................................................................GCUA......GAU......---..---......-...--...-............GG...UG.C.........G.A..C...A...G............-.G..UG............G...U..A...-....G....................U.G...G..C....G.A...UG..................GC.A.G.U.G...GCU.U...U....-G.C.......................................UAGC
   NC_007292.1       UAUUGAAGGAUCGUUAAAAACUAGAAAAUGGCAAA..A...U...C...AAAA...............UGGACA.A..G.A.UCGGUAUAUUACUGAAA.UU...............................................AU...U.G.U....U......A.AU......A..UC...G...G..A...G...GC...GCA....A...UGCA...A...A...U...................................................................GUUG......GGU......AGU..CGU......C...AUucaG............GA...GA.A.........A.A..U...G...U............A.U..CG............U...U..A...G...aU....................A.A...U..C....A.G...AA.................uGU.A.A.U.G...AAU.A...G....CG.G.......................................----
   NC_007406.1       CGUCGAGGGACAGUUGCAGACCCGUAAGUGGACCG..A...C...C...AGAA...............CGGCGU.C..G.A.GAAAUACUCCACCGAAG.UG...............................................GU...U.C.U....U......C.AG......A..AC...U...U..C...A...AU...UCG....A...CGCU...G...AcgaU...................................................................GCUC......GAU......GGC..CGC......A...AU...A............GC...GG.C.........G.-..-...-...G............G.G..GC............G...G..C...A....A....................U.U...U..C....G.G...AC..................CU.G.A.C.Ga.uGCC.G...G....CA.G.......................................CGGC
   NC_007481.1       UGUUGAAGGUAAACUUCAAACACGUAAAUGGACUG..A...C...C...CACA...............AGGCCA.A..G.A.AAAAUACACGACUGAAA.UU...............................................GU...A.G.U....U......G.ACg...guU..UU...A...C..C...G...GC...CAA....A...UGCA...A...A...U...................................................................GUUA......GGG......AGC..CGU......-...--...G............GU...GG.C.........G.A..C...C...A............G.C..AA............G...G..U...G...gG....................C.A...A..C....A.A...-A..................GU.G.G.U.G...GUU.A...U....CA.A.......................................G---
   NC_007510.1       UAUCGAAGGCCGCAUCCGCACGCGCAAGUGGCAGG..G...C...C...AGGA...............CGGCCA.G..G.A.UCGUUACUCGACCGAAA.UC...............................................GU...C.G.C....C......G.AC......-..--...-...-..-...-...--...CAG....A...UGCA...G...A...U...................................................................GCUC......---......---..---......-...--...G............GC...GG.C.........C.G..C...G...G............U.G..CG............G...G..C...G....G....................C.G...G..C....G.G...UG..................GC.G.G.C.G...GUG.A...C....GA.Agg..................................cggUUAC
   NC_007517.1       CAUCGAGGGGCGGCUCCAGACCCGCAAGUGGCAGG..A...C...A...AGGA...............AGGCCG.C..G.A.CCGCUGGUCCACCGAGG.UG...............................................GU...G.G.G...gG......A.GC......G..G-...-...-..-...-...--...---....A...UGCA...G...A...U...................................................................GCUC......GG-......---..---......-...-C...G............GC...AA.G.........G.G..C...G...A............A.G..GG............G...G..C...G....G....................C.G...G..G....C.G...CU..................CC.G.G.C.G...GAC.G...-....--.-.......................................CGGC
   NC_007618.1       UAUCGAAGGCGCGCUCCAGACCCGCAAGUGGCAGG..A...U...C...AAAA...............CGGCAA.U..G.A.CCGUUAUUCAAAGGAAA.UC....g........................................ugCU...G.C.A....A......A.AA......U..UC...C...G..U...G...GA...GAG....C...UUCA...A...A...U...................................................................GCUC......GAC......AGC..CGC......A...GC...G............AA...GG.C.........G.G..C...G...A............-.-..-G............G...G..C...C....G....................U.U...C..C....U.U...CG..................GC.G.G.U.G...GUG.G...-....CA.A.......................................CCGC
   NC_007626.1       UGUCGAGGGUGCGCUGCAGACCCGCAAAUGGACCG..A...U...C...AGUC...............CGGCCA.G..G.A.GAAGUACACCACUGAG-.--...............................................GU...G.G.U....G......A.UC......G..GC...C...G..C...U...UC...A--....-...----...-...-...-........................agggcgagcugacucugc......ugggcggccgugaaggcgg----......--U......GGC..GGC......G...GU...G............GC...GG.C.........G.G..U...G...G............U.G..GU............G...G..U...G....G....................U.G...G..C....U.A...UG..................AC.G.A.C.A...G--.-...-....--.-.......................................----
   NC_007645.1       UAUUGAAGGUCGUCUGCAAACCCGUAAGUGGCAGG..A...U...C...AGUC...............UGGGCA.G..G.A.UCGCUACAGCACUGAGA.UU...............................................GU...U.G.U....A......G.AU......A..UG...C...A..A...G...GU...CAG....A...UGCA...G...A...U...................................................................GCUC......GAC......AGC..CGC......A...GU...G............GC...GG.C.........G.G..U...G...Guaug....gauaA.C..UC............G...C..A..aG....G....................U.U...A..C....A.A...UG..................AC.G.G.-.-...---.-...-....--.-.......................................----
   NC_007712.1       UAUCGAGGGAUCGCUGCAAACUCGCAAGUGGCAGG..A...C...C...AGAG...............CGGUCA.G..G.A.UCGCUACACCACCGAAG.UC...............................................GU...G.G.U....C......A.AU......G..UG...G...G..C...G...GC...ACC....A...UGCA...A...A...U...................................................................GCUC......GGG......GGC..CGU......C...AG...G............GC...GG.Cg.......cG.G..C...G...G............-.C..CA............G...C..G...G....C....................G.G...C..C....A.G...CAg................aGC.G.G.C.U...GGG.G...C....CU.G.......................................CCUC
   NC_007794.1       CAUCGAAGGUCAGCUUCGCACCCGCAAGUGGCAGG..A...C...C...AGUC...............CGGCAA.U..G.A.CCGCUACACCACCGAAA.UC....ucgguuggcg......................gcauggguggcGU...G.C.U....G......A.CC......-..--...-...-..-...-...--...---....-...----...-...-..aU...................................................................GCUC......GAU......GGU..U--......-...--...-............CG...GG.C.........G.G..C...G...C............U.G..GC............G...G..C...G....G....................U.A...G..C....G.G...UG..................GU.G.G.U.G...GCC.G...C...uCG.U.......................................CGG-
   NC_007908.1       UGUGGAAGGCCGCAUCAAGACGCGUAAGUACACCG..A...C...A...AGGA...............CGGCAU.C..G.A.AAAAUACGCCACCGACA.UC...............................................AU...U.G.C....C......A.AC......-..--...-...-..-...-...--...GAG....A...UGCA...A...A...U...................................................................GCUG......GGU......G--..---......-...--...-............GU...CG.C.........G.-..-...-...A............A.G..GC...........aU...G..G...-....G....................C.G...G..C....C.C...A-..................UC.U.G.A.CgacGAU.G...A....AG.G.......................................CGCC
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   NZ_CP077075.1     UAUCGAAGGCAAGCUGCAGACCCGCGAGUGGG---..A...A...A...AAGA...............CGGCAU.C..A.A.GCGCUACACCACCGAGA.UC...............................................AU...C.G.U....C......G.AC......A..UC...A...A..C...G...GC...ACC....A...UGCA...G...C...U...................................................................GCUC......GGU......GGC..CGU......C...CG...CaaaaucaacaggGU...GG.C.........G.G..C...G...Accag...uacaa-.-..--cc........agG...G..U...G....G....................C.G...G..C....A.A...CU..................AC.G.G.U.G...GCG.G...C....CA.G.......................................CAGC
   NZ_CP077076.1     CAUCGAAGGCAAGCUGCAGACCCGCGAGUGGG---..A...A...A...AAGA...............CGGCAU.C..A.A.GCGCUACACCACCGAGA.UC...............................................AU...C.G.U....C......G.AC......A..UC...A...A..C...G...GC...ACC....A...UGCA...G...C...U...................................................................GCUC......GGU......GGC..CGU......C...CG...CagggccagcaagGC...GG.C.........G.G..C...G...Accag...uacaa-.-..--cc........agG...G..U...G....G....................U.G...G..C....A.A...CU..................AC.G.G.U.G...GCG.G...C....CA.G.......................................CAGC
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   NZ_CP077092.1     CAUUGAAGGCAAACUGCAGACCCGCGAGUGG---G..A...A...A...AGGA...............CGGCAU.C..A.A.GCGUUACACCACUGAAA.UC...............................................GU...G.G.U....C......G.AC......A..UG...C...A..A...G...GC...ACC....A...UGCA...A...C...U...................................................................GCUC......GGC......GGC..CGU......C...CA...C............AA...CA.G.........G.G..C...G...A............U.C..-A............G...C..A..aG....G....................C.G...G..C....A.A...CAacu...........accaGC.A.G.C.A...GGC.G...C....CA.-.......................................CGUC
   NZ_CP077093.1     CAUCGAAGGCAAGCUGCAGACCCGUGAGUGGG---..A...A...A...AGGA..........cggga---UCA.A..G.-.-CGCUACACCACCGAGA.UC...............................................AU...C.G.U....C......G.AC......A..UG...C...A..G...G...GC...ACC....A...UGCA...G...C...U...................................................................GCUG......GGU......GGC..CGU......C...CA...C............AA...CA.G.........G.G..C...G...A............-.C..CA............A...C..A...G....G....................-.-...G..C....G.G...UG..................GC.A.A.C.A...ACU.A...C....CA.G.......................................CAGU
   NZ_CP077094.1     CAUCGAAGGCAAACUGCAGACCCGUGAGUGG---G..A...A...A...AGGA...............CGGCAU.C..A.A.GCGCUAUACCACUGAAA.UC...............................................AU...C.G.U....C......G.AC......A..UC...A...A..C...G...GC...ACC....A...UGCA...G...C...U...................................................................GCUC......GGC......GGU..CGC......C...CG...C............AG...GG.Ccag...caaG.G..C...G...G............U.G..ACcaguacaaccagG...G..U...G....G....................U.G...G..C....A.A...CU..................AC.G.G.U.G...GUG.G...C....CA.G.......................................CAGC
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   NZ_LT907988.1     CGUCGAAGGCCGCCUGAAGACGCGCAAGUGGACCG..A...C...A...AGGA...............AAACAU.C..G.A.GCGCUACACCACCGAAA.UC...............................................GU...G.G.C....U......G.AC......-..--...-...-..-...-...--...CAG....A...UGCA...G...A...U...................................................................GCUG......GGU......GGC..CGC......G...AA...G............GC...GG.C.........G.G..C...G...G............C.G..GU............G...A..G...G....G....................C.G...G..U....G.G...UU..................AC.G.G.C.G...GUG.G...C....GA.A.......................................UCGU
   NZ_LT960614.1     UAUCGAGGGUCAGUUGCAGACCCGCGAAUGGGACG..A...C...C...AGAG...............UGGCCA.G..A.A.GCGCUAUUCGACCGAGA.UC...............................................GU...G.C.U....G......C.AG......G..GC...U...U..C...A...AC...UCG....A...CGCUcacG...A...U...................................................................GCUC......GAC......GGC..CGG......G...GU...G............AG...CG.C.........G.G..C...G...A............-.-..-G............G...-..-...-....G....................U.G...A..C....-.-...-U..................UC.G.G.U.G...GCG.G...-....CA.G.......................................CGGC
   NZ_OU015430.1     CAUCGAAGGCUCGAUCCGCUACGACAAGUUCACCG..G...G...C...AGGA...............CGGCGU.C..G.A.GAAAUACUUCACCGACA.UC...............................................GU...C.G.C....C......G.AC......-..--...-...-..-...-...--...GAG....A...UGCA...G...A...U...................................................................GCUC......GGC......G--..---......-...--...-............GC...GG.G.........-.-..-...-...G............G.C..GA............G...G..G...U....G...................gC.G...G..C....G.C...CG..................GC.G.G.U.G...GCG.G...C....UA.-.......................................CCGC
   NZ_OU594967.1     UAUCGAAGGCAAAUUGCAAACGCGCAAAUGGCAGG..A...U...C...AGCA...............AGGCCA.A..G.A.UCGCUAUACUACUGAAA.UU...............................................GU...A.G.C....G......A.AU......-..--...-...-..-...-...--...GAA....A...UGCA...A...A...U...................................................................GCUC......GAU......AGU..C--......-...--...-............GC...GG.U.........G.C..C...G...G............U.C..AA............G...G..G...A....U....................G.A...G..C....C.A...AG..................GC.C.A.A.G...GUG.C...A....CC.A.......................................GCGC
   NZ_OW485601.1     UGUCGAGGGCAGCCUGCAGACGCGCAAAUGGACCG..A...C...C...AGAG...............CGGCCA.G..G.A.AAAAUACACCACCGAG-.--...............................................GU...G.G.U....G......A.UC......G..--...-...-..-...-...--...---....-...-GGA...A...A...U........................uccgcggcg.........................aacugaccc----......---......---..---......-...--...-............--...--.-.........-.-..-...-...-............U.C..CUc..........gG...C..G...G....Gcg...............uggC.G...G..C....G.A...GG..................GC.G.C.C.G...GGG.C...C....--.G.......................................GCCC


   Structure         ((((((..((((.((((.............(((((.................................)))))..(..(.(..((((.((((((.......................................................))...).).)....)........((.........((...(...(..(...(...((...(((.........((................................................................................))........))).......))..)))......)...))................))................).)..)...)................).)..).............)...)..)...).........................).)...)..)..............................)).).).).)...(((.(...................................................))))


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ssb



Position: 361-490, Conformation: #1







97% 90% 75% 50% Nucleotide present N N N Nucleotide identify E < 0.1 Base-pair covariation E < 0.05 Helix-level covariation 97% 90% 75%

Y R U Y G A R G G Y R Y U C R A C C G Y A A R U G G G A Y A R Y G G Y R G A C G U A Y R C A C Y G A R R U G U Y R R U G C R A U G C U G R Y R R R R Y G R Y G G R R R R C R Y R R Y R R 5'