ssb



Position: 361-490, Conformation: #0







DMS reactivity > 1.0 0.0 0.4 0.7 G/U/No data
Position: 0 (position.label in template: 0.5')5' Position: 1 (position.label in template: 1.C) Reactivity: nanC Position: 2 (position.label in template: 2.A) Reactivity: nanA Position: 3 (position.label in template: 3.G) Reactivity: nanG Position: 4 (position.label in template: 4.G) Reactivity: nanG Position: 5 (position.label in template: 5.U) Reactivity: nanU Position: 6 (position.label in template: 6.U) Reactivity: nanU Position: 7 (position.label in template: 7.U) Reactivity: nanU Position: 8 (position.label in template: 8.A) Reactivity: nanA Position: 9 (position.label in template: 9.U) Reactivity: nanU Position: 10 (position.label in template: 10.A) Reactivity: nanA Position: 11 (position.label in template: 11.U) Reactivity: nanU Position: 12 (position.label in template: 12.C) Reactivity: nanC Position: 13 (position.label in template: 13.G) Reactivity: nanG Position: 14 (position.label in template: 14.A) Reactivity: nanA Position: 15 (position.label in template: 15.A) Reactivity: nanA Position: 16 (position.label in template: 16.G) Reactivity: nanG Position: 17 (position.label in template: 17.G) Reactivity: nanG Position: 18 (position.label in template: 18.U) Reactivity: nanU Position: 19 (position.label in template: 19.C) Reactivity: nanC Position: 20 (position.label in template: 20.A) Reactivity: nanA Position: 21 (position.label in template: 21.G) Reactivity: nanG Position: 22 (position.label in template: 22.C) Reactivity: nanC Position: 23 (position.label in template: 23.U) Reactivity: nanU Position: 24 (position.label in template: 24.G) Reactivity: nanG Position: 25 (position.label in template: 25.C) Reactivity: nanC Position: 26 (position.label in template: 26.G) Reactivity: nanG Position: 27 (position.label in template: 27.U) Reactivity: nanU Position: 28 (position.label in template: 28.A) Reactivity: nanA Position: 29 (position.label in template: 29.C) Reactivity: nanC Position: 30 (position.label in template: 30.C) Reactivity: nanC Position: 31 (position.label in template: 31.C) Reactivity: nanC Position: 32 (position.label in template: 32.G) Reactivity: nanG Position: 33 (position.label in template: 33.U) Reactivity: nanU Position: 34 (position.label in template: 34.A) Reactivity: 0A Position: 35 (position.label in template: 35.A) Reactivity: 1A Position: 36 (position.label in template: 36.A) Reactivity: 0.5A Position: 37 (position.label in template: 37.U) Reactivity: nanU Position: 38 (position.label in template: 38.G) Reactivity: nanG Position: 39 (position.label in template: 39.G) Reactivity: nanG Position: 40 (position.label in template: 40.A) Reactivity: 0A Position: 41 (position.label in template: 41.C) Reactivity: 0C Position: 42 (position.label in template: 42.C) Reactivity: 0C Position: 43 (position.label in template: 43.G) Reactivity: nanG Position: 44 (position.label in template: 44.A) Reactivity: 0.5A Position: 45 (position.label in template: 45.U) Reactivity: nanU Position: 46 (position.label in template: 46.C) Reactivity: 1C Position: 47 (position.label in template: 47.A) Reactivity: 1A Position: 48 (position.label in template: 48.A) Reactivity: 1A Position: 49 (position.label in template: 49.U) Reactivity: nanU Position: 50 (position.label in template: 50.C) Reactivity: 0.5C Position: 51 (position.label in template: 51.C) Reactivity: 0C Position: 52 (position.label in template: 52.G) Reactivity: nanG Position: 53 (position.label in template: 53.G) Reactivity: nanG Position: 54 (position.label in template: 54.U) Reactivity: nanU Position: 55 (position.label in template: 55.C) Reactivity: 0C Position: 56 (position.label in template: 56.A) Reactivity: 1A Position: 57 (position.label in template: 57.G) Reactivity: nanG Position: 58 (position.label in template: 58.G) Reactivity: nanG Position: 59 (position.label in template: 59.A) Reactivity: 0.5A Position: 60 (position.label in template: 60.U) Reactivity: nanU Position: 61 (position.label in template: 61.C) Reactivity: 0.5C Position: 62 (position.label in template: 62.G) Reactivity: nanG Position: 63 (position.label in template: 63.C) Reactivity: 0C Position: 64 (position.label in template: 64.U) Reactivity: nanU Position: 65 (position.label in template: 65.A) Reactivity: 1A Position: 66 (position.label in template: 66.C) Reactivity: 0C Position: 67 (position.label in template: 67.A) Reactivity: 0A Position: 68 (position.label in template: 68.C) Reactivity: 0C Position: 69 (position.label in template: 69.C) Reactivity: 0C Position: 70 (position.label in template: 70.A) Reactivity: 0A Position: 71 (position.label in template: 71.C) Reactivity: 0C Position: 72 (position.label in template: 72.A) Reactivity: 0.5A Position: 73 (position.label in template: 73.G) Reactivity: nanG Position: 74 (position.label in template: 74.A) Reactivity: 1A Position: 75 (position.label in template: 75.A) Reactivity: 1A Position: 76 (position.label in template: 76.G) Reactivity: nanG Position: 77 (position.label in template: 77.U) Reactivity: nanU Position: 78 (position.label in template: 78.C) Reactivity: 1C Position: 79 (position.label in template: 79.G) Reactivity: nanG Position: 80 (position.label in template: 80.U) Reactivity: nanU Position: 81 (position.label in template: 81.G) Reactivity: nanG Position: 82 (position.label in template: 82.G) Reactivity: nanG Position: 83 (position.label in template: 83.U) Reactivity: nanU Position: 84 (position.label in template: 84.G) Reactivity: nanG Position: 85 (position.label in template: 85.A) Reactivity: 0A Position: 86 (position.label in template: 86.A) Reactivity: 0A Position: 87 (position.label in template: 87.C) Reactivity: 1C Position: 88 (position.label in template: 88.G) Reactivity: nanG Position: 89 (position.label in template: 89.U) Reactivity: nanU Position: 90 (position.label in template: 90.U) Reactivity: nanU Position: 91 (position.label in template: 91.G) Reactivity: nanG Position: 92 (position.label in template: 92.G) Reactivity: nanG Position: 93 (position.label in template: 93.C) Reactivity: 0C Position: 94 (position.label in template: 94.G) Reactivity: nanG Position: 95 (position.label in template: 95.G) Reactivity: nanG Position: 96 (position.label in template: 96.C) Reactivity: 0C Position: 97 (position.label in template: 97.A) Reactivity: 0.5A Position: 98 (position.label in template: 98.C) Reactivity: 0.5C Position: 99 (position.label in template: 99.C) Reactivity: 0C Position: 100 (position.label in template: 100.A) Reactivity: 0A Position: 101 (position.label in template: 101.U) Reactivity: nanU Position: 102 (position.label in template: 102.G) Reactivity: nanG Position: 103 (position.label in template: 103.C) Reactivity: 1C Position: 104 (position.label in template: 104.A) Reactivity: 1A Position: 105 (position.label in template: 105.G) Reactivity: nanG Position: 106 (position.label in template: 106.A) Reactivity: 0.5A Position: 107 (position.label in template: 107.U) Reactivity: nanU Position: 108 (position.label in template: 108.G) Reactivity: nanG Position: 109 (position.label in template: 109.C) Reactivity: 0.5C Position: 110 (position.label in template: 110.U) Reactivity: nanU Position: 111 (position.label in template: 111.G) Reactivity: nanG Position: 112 (position.label in template: 112.G) Reactivity: nanG Position: 113 (position.label in template: 113.G) Reactivity: nanG Position: 114 (position.label in template: 114.U) Reactivity: nanU Position: 115 (position.label in template: 115.G) Reactivity: nanG Position: 116 (position.label in template: 116.G) Reactivity: nanG Position: 117 (position.label in template: 117.U) Reactivity: nanU Position: 118 (position.label in template: 118.C) Reactivity: 0.5C Position: 119 (position.label in template: 119.G) Reactivity: nanG Position: 120 (position.label in template: 120.U) Reactivity: nanU Position: 121 (position.label in template: 121.C) Reactivity: 0C Position: 122 (position.label in template: 122.A) Reactivity: 1A Position: 123 (position.label in template: 123.G) Reactivity: nanG Position: 124 (position.label in template: 124.G) Reactivity: nanG Position: 125 (position.label in template: 125.G) Reactivity: nanG Position: 126 (position.label in template: 126.U) Reactivity: nanU Position: 127 (position.label in template: 127.G) Reactivity: nanG Position: 128 (position.label in template: 128.G) Reactivity: nanG Position: 129 (position.label in template: 129.U) Reactivity: nanU Position: 130 (position.label in template: 130.G) Reactivity: nanG Position: 131 (position.label in template: 131.G) Reactivity: nanG Position: 132 (position.label in template: 132.C) Reactivity: 0.5C Position: 133 (position.label in template: 133.G) Reactivity: nanG Position: 134 (position.label in template: 134.C) Reactivity: 0C Position: 135 (position.label in template: 135.U) Reactivity: nanU Position: 136 (position.label in template: 136.C) Reactivity: 0.5C Position: 137 (position.label in template: 137.C) Reactivity: 0C Position: 138 (position.label in template: 138.G) Reactivity: nanG Position: 139 (position.label in template: 139.G) Reactivity: nanG Position: 140 (position.label in template: 140.C) Reactivity: nanC Position: 141 (position.label in template: 141.A) Reactivity: nanA Position: 142 (position.label in template: 142.G) Reactivity: nanG Position: 143 (position.label in template: 143.G) Reactivity: nanG Position: 144 (position.label in template: 144.U) Reactivity: nanU Position: 145 (position.label in template: 145.G) Reactivity: nanG Position: 146 (position.label in template: 146.G) Reactivity: nanG Position: 147 (position.label in template: 147.C) Reactivity: nanC Position: 148 (position.label in template: 148.A) Reactivity: nanA Position: 149 (position.label in template: 149.A) Reactivity: nanA Position: 150 (position.label in template: 150.U) Reactivity: nanU Position: 151 (position.label in template: 151.A) Reactivity: nanA Position: 152 (position.label in template: 152.U) Reactivity: nanU Position: 153 (position.label in template: 153.C) Reactivity: nanC Position: 154 (position.label in template: 154.G) Reactivity: nanG Position: 155 (position.label in template: 155.G) Reactivity: nanG Position: 156 (position.label in template: 156.U) Reactivity: nanU Position: 157 (position.label in template: 157.G) Reactivity: nanG Position: 158 (position.label in template: 158.G) Reactivity: nanG Position: 159 (position.label in template: 159.U) Reactivity: nanU Position: 160 (position.label in template: 160.G) Reactivity: nanG Position: 161 (position.label in template: 161.G) Reactivity: nanG Position: 162 (position.label in template: 162.U) Reactivity: nanU Position: 163 (position.label in template: 163.C) Reactivity: nanC Position: 164 (position.label in template: 164.A) Reactivity: nanA Position: 165 (position.label in template: 165.G) Reactivity: nanG Position: 166 (position.label in template: 166.C) Reactivity: nanC Position: 167 (position.label in template: 167.C) Reactivity: nanC Position: 168 (position.label in template: 168.G) Reactivity: nanG Position: 169 (position.label in template: 169.C) Reactivity: nanC Position: 170 (position.label in template: 170.A) Reactivity: nanA Position: 171 (position.label in template: 171.3')3' 10 20 30 50 100 150


ssb



Position: 361-490, Conformation: #0







Retained alignments:


   NC_002932.3       UCUUC.GAG-GCG..-U.CGGGUCUCGUCAAAGG....GCG.CG..A...A...U....A...C....A.C........................C...G...U..G.C.A.G.GAGA.GCG..A.CCGCACCGA.C.G.A.C...............................................................G.G....G..C...G...G....C.U...C......G.......U.......U...-.-...-...-......--.-...-...-...-...-.....--.....-.-.---...-......--...-.-...--...--cgccccgacu......................................ucauggugcau....-...-...-......-...-...-...-.......--...-.-...-..-..-.........-....-..-....-....C.U..G...........C....C.....G...G...G............C...G.......A......G..A....A...G...G...............C...G..G....U...G...A...U.C...G..U.....U.....G...A...U......................................G.C.GA
   NC_003317.1       UAUCG.AAGGCGC..GC.UCCAGACCCGCAAGUG....GCA.GG..A...U...C....A...A....A.A........................C...G...G..C.A.A.U.GACC.GUU..A.UUCAACGGA.A.A.U.C...............................................................G.Ug..cU..G...C...A....A.A...A......A.......U.......U...C.C...G...U......G-.-...-...-...-...-.....--.....-.-.---...-......--...-.-...--...--gagagcuucaaaug..............................cucgacagccgcagc....-...-...-......-...-...-...-.......--...-.-...-..-..G.........A....A..G....G....C.A..G...........C....G.....A...G...G............G..cC.......G......U..U....C...C...U...............U...C..G....G...C...G...G.U...G..G.....Ug...gC...A...A......................................C.C.GC
   NC_004310.3       UAUCG.AAGGCGC..GC.UCCAGACCCGCAAGUG....GCA.GG..A...U...C....A...A....A.A........................C...G...G..C.A.A.U.GACC.GUU..A.UUCAACGGA.A.A.U.C...............................................................G.Ug..cU..G...C...A....A.A...A......A.......U.......U...C.C...G...U......G-.-...-...-...-...-.....--.....-.-.---...-......--...-.-...--...--gagagcuucaaaugcu...........................cgacagccgcagcgaa....-...-...-......-...-...-...-.......--...-.-...-..-..-.........-....-..G....G....C.G..G...........C....G.....A...G...G............G..cC.......G......U..U....C...C...U...............U...C..G....G...C...G...G.U...G..G.....Ug...gC...A...A......................................C.C.GC
   NC_004578.1       CAUCG.AAGGCAA..GC.UGCAGACCCGCGAAUG....G--.-G..A...A...A....A...A....G.A........................C...G...G..C.A.U.C.AAGC.GCU..A.CACCACUGA.A.A.U.C...............................................................G.U....C..G...U...C....G.A...C......A.......U.......G...C.A...A...G......GC.A...C...C...A...U.....GC.....A.A.CUG...C......UG...G.G...CG...GC...............................................................C...G...U......C...C...A...C.......AG...G.G...C..G..A.........C....G..C....U....C.-..A...........A....C.....A...A...G............-...-.......G......U..C....A...G...G...............G...C..G....G...U...G...G.C...G..G.....-.....C...A...A......................................C.U.AC
   NC_004603.1       CGUUG.AAGGCCA..AC.UUCAAACUCGUAAAUG....GCA.AG..A...C...C....A...A....A.G........................U...G...G..C.C.A.A.GAUC.GCU..A.CUCAACAGA.A.G.U.U...............................................................G.U....G..G...U...U....C.A...A......Gg....uuU.......C...A.A...U...G......GU.G...U...A...A...U.....GC.....A.A.AUG...C......UU...G.G...UG...GC...............................................................C...G...U......G...C...U...C.......AA...G.G...U..G..G.........C....G..C....U....C.C..U...........G....C.....A...A...U............G...G.......G......C..G....G...U..cA...............A...C..A....A...C...A...G.C...A..G.....C.....A...A...-......................................-.-.--
   NC_004757.1       UAUCG.AAGGCCG..CC.UGCAAACACGCAAAUG....GAC.CG..A...U...A....A...A....U.C........................C...A...A..C.G.U.G.GAGC.GCU..A.UACCACCGA.A.A.U.C...............................................................G.U....C..G...C...G....G.A...U......-.......-.......-...-.-...-...-......-C.-...G...C...A...U.....GC.....A.A.AUG...C......UG...G.G...AG...GC...............................................................C...G...U......U...C...G...G.......GA...G.-...-..-..-.........-....-..-....-....G.C..G...........G....C.....A...G...Cuauga..uccucC...G.......G......C..C....-...G...A...............C...C..G....G...-...-...-.-...-..-.....-.....-...-...-......................................-.-.-G
   NC_005126.1       UAUUG.AAGGUUC..UC.UGCAAACCCGUAAAUG....GCA.GG..A...U...C....A...G....A.A........................C...G...G..U.C.A.A.GAGC.GUU..A.CACCACGGA.A.G.U.A...............................................................G.U....G..G...U...A....A.A...C......A.......U.......G...G.G...C...G......GU.A...C...C...A...U.....GC.....A.A.AUG...U......UG...G.G...UG...GU...............................................................C...G...U......G...C...U...G.......GU...G.G...U..G..Gua.....guU....U..C....C....A.G..G...........A....U.....A...G...C............C...A.......A......C..A....A...U...C...............A...C..A....A...-...G...G.C...G..G.....-.....-...-...-agguug......................gggacag...C.C.AC
   NC_005966.1       UAUUG.AAGGUUC..AU.UGCGUACACGCCAGUG....GAC.AG..A...C...C....A...G....A.A........................U...G...G..U.C.A.G.GAGC.GUU..A.UACCACCGA.AaU.U.C...............................................................G.U....G..G...U...G....A.C...C......A.......G.......-...-.-...-...-......A-.-...-...-...-...U.....GC.....A.A.AUG...C......UA...G.A...UA...CA...............................................................C...G...U......U...C...A...C.......AA...-.-...-..G..G.........C....G..A....U....C.A..G...........C....C.....A...A...U............G...A.......G......C..G....G...U...G...............G...U..A....A...C...G...A.U...U..U.....U.....A...A...U......................................C.A.G-
   NC_006526.2       CAUUG.AAGGCCA..GC.UGCAAACCCGUAAAUG....GCA.GG..A...U...C....A...G....U.C........................C...G...G..U.C.A.G.GAUC.GCU..A.UUCAACCGA.A.G.U.U...............................................................G.U....U..U...U...G....C.A...A......G.......G.......A...U.U...U...A......AU.G...C...C...A...G.....CC.....U.U.GUGaugU......UG...G.A...UG...GU...............................................................C...G...C......A...G...U...G.......GC...G.G...C..G..G.........U....G..A....UuucaA.C..G...........G....C.....G...G...-............C...G.......G......C..A....A...U...Aa............uuU...U..G....G...U...G...G.U...G..G.....-.....U...A...G......................................C.G.GC
   NC_007204.1       UAUUG.AAGGCAG..CU.UGCGCACCCGUAAAUA....--U.CA..-...-...-....-...-....-.-agau............cccaa...U...G...G..A.C.A.A.GACC.GUU..A.UAUUACUGA.A.AuU.C...............................................................G.U....G..C...U...G....A.A...C......A.......A.......A...U.G...C...A......GA.U...G...C...U...A.....GA.....U.G.GUG...-......--...-.-...--...--...............................................................C...G...A......C...A...G...G.......UG...G.U...A..G..U.........G....G..C....G....A.U..G...........G....C.....A...Gu.gG............C...U.......U......U..G....C...U...A...............G...C..A....A...U...A...A.C...C..A.....A.....C...A...A......................................-.G.GU
   NC_007481.1       UGUUG.AAGGUAA..AC.UUCAAACACGUAAAUG....GAC.UG..A...C...C....C...A....C.A........................A...G...G..C.C.A.A.GAAA.AAU..A.CACGACUGA.A.A.U.U...............................................................G.U....A..G...U...U....G.A...C......Gg....uuU.......U...A.C...C...G......GC.C...A...A...A...U.....GC.....A.A.AUG...U......UA...G.G...GA...GC...............................................................C...G...U......-...-...-...G.......GU...-.-...-..G..G.........C....G..A....C....C.A..G...........C....A.....A...G...G............U...G......gG......C..A....A...C...A...............-...A..A....G...U...G...G.U...G..G.....U.....U...-...-aucaagg.....................uaaucaa...U.C.AC
   NC_007510.1       UAUCG.AAGGCCG..CA.UCCGCACGCGCAAGUG....-GC.AG.gG...C...C....A...G....G.A........................C...G...G..C.C.A.G.GAUC.GUU..A.CUCGACCGA.A.A.U.C...............................................................G.U....C..G...C..cG....A.C...C.....aG.......A.......U...G.C...A...G......AU.G...C...U...C...G.....GC.....G.G.CCG...C......GG...U.G...CG...GG...............................................................C...G...G......C...G...G...C.......GG..uG.G...C..G..G.........C....G..G....U....G.A..C...........G....A.....A...G...G............C...G.......G......U..U....A...C...G...............G...C..G....G...-...-...-.-...-..-.....-.....-...-...-......................................-.-.--
   NC_007626.1       UGUCG.AGGGUGC..GC.UGCAGACCCGCAAAUG....GAC.CG..A...U...C....A...G....U.C........................C...G...G..C.C.A.G.GAGA.AGU..A.CACCACUGA.G.-.-.-...............................................................G.U....G..G...U...G....A.U...-......-.......-.......-...-.-...C...G......GC.C...G...C...U...U.....-C.....A.A.GGG...C......GA...G.C...UG...-A...............................................................C...U...C......U...G...C...U.......GG...G.C...G..G..C.........C....G..U....G....A.A..G...........G....C.....G...G..uG............G...C......gG......C..G....G...U...G...............G...C..G....G...C...G...G.U...G..G.....U.....-...-...-gguggugguggc...........uaugacgacagc...C.C.GC
   NC_007645.1       UAUUG.AAGGUCG..UC.UGCAAACCCGUAAGUG....GCA.GG..A...U...C....A...G....U.C........................U...G...G..G.C.A.G.GAUC.GCU..A.CAGCACUGA.G.A.U.U...............................................................-.-....G..U...U...G....U.A...G......A.......U.......A...U.G...C...A......A-.-...-...-...G...G.....UC.....A.G.AUG...C......A-...G.A...UG...CU...............................................................C...G...A......C...A...G...C.......--...-.-...-..-..-.........C....G..C....A....G.U..G...........G....C.....G...G...-............C...G.......G......U..G....G...U...A...............U...G..G....A...U...A...-.-...-..-.....-.....-...-...-acucgca.....................agguuac...-.-.--
   NC_007712.1       UAUCG.AGGGAUC..GC.UGCAAACUCGCAAGUG....GCA.GG..A...C...C....A...G....A.G........................C...G...G..U.C.A.G.GAUC.GCU..A.CACCACCGA.A.G.U.C...............................................................G.U....G..G...U...C....A.A...U......G.......U.......G...G.G...C...G......GC.A...C...C...A...U.....GC.....A.A.AUG...C......UC...G.G...GG...GC...............................................................C...G...U......C...A...G...G.......GC...G.G...C..GcgG.........C....G..G....C....-.C..A...........G....C.....G...G...C............G...G.......C......C..Ag..cA...G...A...............G...C..G....G...C...U...G.G...G..G.....C.....C...U...G......................................C.C.UC
   NC_007794.1       CAUCG.AAGGUCA..GC.UUCGCACCCGCAAGUG....GCA.GG..A...C...C....A...G....U.C........................C...G...G..C.A.A.U.GACC.GCU..A.CACCACCGA.A.A.U.C...............................................................U.C....G..G...U...U....G.G...C......Gg....caU.......G...G.G...U...G......G-.-...-...C...G...U.....GC.....U.G.ACC...A......UG...C.U...CG...AU...............................................................G...G...U......U...C...G...G.......GC...G.-...-..-..G.........C....G..C....U....-.-..-...........G....-.....-...-...G............C...G.......G......C..G....G...U...A...............G...C..G....G...U...G...G.U...G..G.....U.....-...G...G......................................C.C.GC
   NC_008344.1       UAUCG.AAGGUCG..CU.UACAAACGCGCAAAUG....GAC.UG..A...U...A....A...A....U.C........................C...A...A..C.G.U.G.GAAC.GCU..A.UACCACCGA.A.A.U.C...............................................................G.U....C..G...C...C....G.A...C......C.......G.......-...-.-...-...-......--.-...-...U...A...U.....GC.....A.A.AUG...C......UU...G.G...UG...GC...............................................................C...G...C......U...C...A...G.......GU...G.-...-..-..-.........-....-..-....-....G.U..G...........G....C.....A...-...G............C...G.......G......U..G....G...U...A...............A...C..U....A...U...G...A.U...C..-.....-.....-...-...-caccagc.....................cgaccaa...-.G.GU
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   NZ_LS483377.1     CGUCG.AAGGCAG..CC.UGCGCUACGACAAGUA....CAC.CG..G...C...C....A...G....G.A........................C...G...G..C.G.U.G.GAGA.AGU..A.---------.-.-.-.-cucca..................................................ccgac...-.-....-..-...-...-....A.U...C......A.......U.......U...G.C...C...G......AU.G...A...A...A...U.....GC.....A.G.AUG...C......UG...G.G...CG...G-ccgcag...............................................ugaagg....C...G...G......U...G...G..cG.......GU...G.G...C..G..G.........C....G..G....C....-.-..G...........G....-.....U...G...G............U...G.......G......C..A....A...C...U...............A...C..G....G...C...G...G.C...G..A.....U.....C...G...U......................................C.C.GC
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   NZ_LS483429.1     UGUGG.AGGGUCG..UU.UAAAAACACGUAAAUG....GCA.AG..A...U...C....A...A....A.A........................C...G...G..U.C.A.A.GAUC.GUU..A.CACCACAGA.A.A.-.-uucaaggcgaug....................................uaaugcaaaugc...U.U....G..G...U...G....G.A...C......G.......U.......A...A.U...-...-......-C.A...A...A...A...C.....GC.....A.-.---...-......--...-.-...--...--g........................................................gu....-...-...-......-...-...-...G.......GU...U.A...U..G..G.........U....A..A....U....G.A..U...........A....U.....G...G...G............C...G.......G......U..G....-...-...C...............G...C..C....A...C...A...A.-...-..-.....-.....-...-...-......................................-.-.--
   NZ_LS483470.1     UCUGG.AAGGCCA..GC.UGCAAACUCGCAAAU-....GGC.AG.gA...U...C....A...G....A.G........................C...G...G..C.C.A.G.GAUC.GCU..A.UACCACCGA.A.G.U.G...............................................................G.U....U..G...U...U....A.A...U......A.......U.......C...G.G...U...G......GC.G...U...A...A...U.....GC.....A.G.AUG...C......UG...G.G...CG...GC...............................................................C...G...U......C...A...G...G.......GC...G.G...C..G..G.........U....G..A....U....U.C..-...........U....C.....A...G...C............C...G.......U......C..-....-...-...-...............U...C..A....G...G...Gu.gG.U...U..G.....G.....G...G...C......................................C.A.GC
   NZ_LT594522.1     UAUUG.AAGGAUC..AC.UGCAAACUCGCAAGUG....G-C.AG..G...A...C....A...A....U.A.......................gU...G...G..U.C.A.G.GAUC.GUU..A.UACAACUGA.A.A.U.A...............................................................U.U....A..G...U...A....A.A...U......U.......U.......A...G.G...U...G......GA.A...C...C...A...U.....GC.....A.G.AUG...A......UU...G.G...CG...GC...............................................................C...G...U......C...C...A...G.......GU...A.A...U..-..G.........C....A..C....A....A.A..A..........aG....G.....A...G...Aa..........uG...G.......A......G..A....C...A...A...............U...C..U....A...C...G...C.A...G..G.....U.....A...A...A......................................U.-.--
   NZ_LT615367.1     UAUCG.AAGGCCA..GU.UGCGCACCCGCAAAUG....GCA.GG..A...U...C....A...A....A.G........................U...G...G..G.C.A.A.GACC.GUU..A.CACCACCGA.A.G.U.G...............................................................G.U....G..G...U...C....G.A...U......G.......U.......U...U.C...C...G......GC.A...G...C...A...U.....GC.....A.G.AUG...C......UG...G.G...UG...GC...............................................................C...G...C......A...G...C...G.......GC...G.G...C..G..G.........G....G..C....A....C.C..U...........G....C.....G...G...G............U...G.......G......C..A....A...C...A...............U...G..G....G...C...G...G.C...G..G.....C.....A...A...-......................................-.-.--
   NZ_LT855380.1     CAUCG.AGGGCAA..GC.UGCAGACCCGCGAGUG....G--.-G..A...A...A....A...A....G.A........................C...G...G..U.A.U.C.AAGC.GUU..A.CACCACCGA.A.A.U.C...............................................................G.U....C..G...U...U....G.A...C......A.......U.......G...C.A...A...G......GC.A...C...C...A...U.....GC.....A.G.UUG...C......UG...G.G...CG...GC...............................................................C...G...U......C...C...A...C.......AG...G.G...C..G..A.........C....G..C....-....A.C..A...........A....C.....A...G...G............-...-.......G......C..C....A...G...-...............-...-..G....G...U...G...G.C...G..G.....-.....C...A...A......................................C.U.AC
   NZ_LT897836.1     UAUCG.AAGGAUC..AC.UGCAGACCCGUAAGUG....GCA.AG..A...C...C....A...A....A.G........................C...G...G..A.C.A.G.GUUC.GUU..A.CACUACCGA.G.A.U.A...............................................................G.U....A..G...U...U....A.A...U......A.......U.......G...G.G...C...G......GU.A...C...C...A...U.....GC.....A.A.AUG...C......UU...G.G...UG...GU...............................................................C...G...C......C...A...U...A.......GC...A.G...U..A..G.........C....G..G....G....A.-..-...........-....C.....G...G...G............A...G.......U......U..A....A...C...A...............C...U..G....G...U...G...G.U...G..U.....A.....C...A...G......................................C.A.GC
   NZ_LT906435.1     UAUCG.AAGGCCG..UA.UCCGUACGCGCAAGU-....-AC.C-..-...-...-....-...-....-.-aggcg..........caggac...-...G...G..C.A.C.G.GAGC.GCU..A.CAGCACGGA.A.A.U.C...............................................................G.U....G.gC...U...G....A.C...C......A.......G.......-...-.-...-...-......--.-...-...-...A...U.....GC.....A.G.AUG...C......UG...G.G...UG...GC...............................................................C...G...U......A...G...C...G.......GC...-.-...-..G..G.........C....-..-....-....G.G..C...........G....A.....A...G...G............U...G.......G......C..-....-...-...G...............G...C..G....G...U...G...G.C...G..G.....C.....U...A...C......................................U.C.GC
   NZ_LT906479.1     CAUCG.AAGGUUC..CC.UGCAAACCCGCAAAUG....GAC.CG..A...U...C....A...G....G.C........................C...G...G..C.G.U.A.GAAA.AAU..A.CACCACCGA.A.G.U.G...............................................................G.U....G..G...U...U....A.A...C......G.......U.......U...G.G...C...G......GC.A...C...C...A...U.....GC.....A.G.AUG...C......UG...G.G...CG...GC...............................................................C...G...U......C...A...G...G.......GC...G.G...C..G..G.........C....G..C....A....C.C..U...........G....C.....G...G...G............C...G.......G......C..G....G...C...C...............A...G..G....C...U...U...C.C...G..G.....-.....C...G...G......................................C.C.AG
   NZ_LT907988.1     CGUCG.AAGGCCG..CC.UGAAGACGCGCAAGUG....GA-.--..-...-...-....-...-....-.-ccgacaa......ggaaaaca...-...-...-..U.C.-.-.GAGC.GCU..A.CACCACCGA.A.A.U.C...............................................................G.U....G..G..cU...G....A.C...C......-.......-.......-...-.-...A...G......A-.-...-...-...-...U.....GC.....A.G.AUG...C......UG...G.G...UG...GC...............................................................C...G...C......G...A...A...G.......GC...G.G...C..G..G.........C....G..-....G....C.G..G...........U....G.....A...G..gG............C...G.......G......U..G....G...U...U...............A...C..G....G...C...G...G.U...G..G.....C.....G...A...A......................................U.C.GU
   NZ_LT960614.1     UAUCG.AGGGUCA..GU.UGCAGACCCGCGAAUG....GGA.CG..A...C...C....A...G....A.G........................U...G...G..C.C.A.G.AAGC.GCU..A.UUCGACCGA.G.A.U.C...............................................................G.U....G..C...U...G....C.A...G......G.......G.......C...U.U...C...A......AC.U...C...G...A...C.....GC.....U.C.ACG...A......UG...-.-...--...CU...............................................................-...-...C......G...A...C...G.......GC...C.G...G..G..G.........U....G..A....G....CgC..G...........G....C.....G...A...G............-...G.......G......U..G....A...C...U...............U...C..G....G...U...G...G.C...G..G.....-.....C...A...G......................................C.G.GC
   NZ_OW485601.1     UGUCG.AGGGCAG..CC.UGCAGACGCGCAAAUG....GAC.CG..A...C...C....A...G....A.G........................C...G...G..C.C.A.G.GAAA.AAU..A.CACCACCGA.G.-.-.-...............................................................G.U....G..G...U...G....A.U...C......Gg....gaA.......A...U.U...C...C......GC.G...G...C...G...A.....AC.....U.G.ACC...C......UC...C.U...CG...GC...............................................................G...G...G......C...G...U...G.......GC...G.G...C..G..A.........G....G..G....C....G.C..C...........G....G.....G...G...C............C...G.......G......C..C....C...G...G...............-...-..-....-...-...-...-.-...-..-.....-.....-...-...-......................................-.-.--


   Structure         (((((.(..((((...(.(((.................(((.((...................................................)...)...)..).).................((((((..........................................................................).)....)..)...)...).....................................(.(...(...(.......(.(...(...(...(...(..............(.(((...........................................................................................)...)...)......)...................))...).)...)..)............)....)..)....).....................)....).....)...)................)...).......)......)...............................)...)..)....)...)...)...(.(...(..(..........................................................).).))


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ssb



Position: 361-490, Conformation: #0







97% 90% 75% 50% Nucleotide present N N N Nucleotide identify E < 0.1 Base-pair covariation E < 0.05 Helix-level covariation 97% 90% 75%

Y R U Y G A A G G Y R Y U R C R A C C G Y A A R U G G G A Y C A R Y G G Y C A R G A C R U A Y R C A C G A R R U G U Y R R R U G C R R U G Y U G R Y R R C G R R G R R R C Y R R Y R R 5'