srlA-srlE-srlB-srlD-gutM-srlR-gutQ



Position: 1811-1900, Conformation: #0







DMS reactivity > 1.0 0.0 0.4 0.7 G/U/No data
Position: 0 (position.label in template: 0.5')5' Position: 1 (position.label in template: 1.G) Reactivity: nanG Position: 2 (position.label in template: 2.G) Reactivity: nanG Position: 3 (position.label in template: 3.A) Reactivity: nanA Position: 4 (position.label in template: 4.A) Reactivity: nanA Position: 5 (position.label in template: 5.G) Reactivity: nanG Position: 6 (position.label in template: 6.A) Reactivity: nanA Position: 7 (position.label in template: 7.C) Reactivity: nanC Position: 8 (position.label in template: 8.A) Reactivity: nanA Position: 9 (position.label in template: 9.A) Reactivity: nanA Position: 10 (position.label in template: 10.C) Reactivity: nanC Position: 11 (position.label in template: 11.C) Reactivity: nanC Position: 12 (position.label in template: 12.U) Reactivity: nanU Position: 13 (position.label in template: 13.U) Reactivity: nanU Position: 14 (position.label in template: 14.C) Reactivity: nanC Position: 15 (position.label in template: 15.G) Reactivity: nanG Position: 16 (position.label in template: 16.C) Reactivity: nanC Position: 17 (position.label in template: 17.G) Reactivity: nanG Position: 18 (position.label in template: 18.A) Reactivity: nanA Position: 19 (position.label in template: 19.A) Reactivity: nanA Position: 20 (position.label in template: 20.C) Reactivity: nanC Position: 21 (position.label in template: 21.U) Reactivity: nanU Position: 22 (position.label in template: 22.G) Reactivity: nanG Position: 23 (position.label in template: 23.G) Reactivity: nanG Position: 24 (position.label in template: 24.G) Reactivity: nanG Position: 25 (position.label in template: 25.U) Reactivity: nanU Position: 26 (position.label in template: 26.C) Reactivity: nanC Position: 27 (position.label in template: 27.A) Reactivity: nanA Position: 28 (position.label in template: 28.U) Reactivity: nanU Position: 29 (position.label in template: 29.G) Reactivity: nanG Position: 30 (position.label in template: 30.U) Reactivity: nanU Position: 31 (position.label in template: 31.C) Reactivity: 0C Position: 32 (position.label in template: 32.A) Reactivity: 0.5A Position: 33 (position.label in template: 33.C) Reactivity: 0C Position: 34 (position.label in template: 34.C) Reactivity: 0C Position: 35 (position.label in template: 35.C) Reactivity: 0C Position: 36 (position.label in template: 36.U) Reactivity: nanU Position: 37 (position.label in template: 37.G) Reactivity: nanG Position: 38 (position.label in template: 38.C) Reactivity: 0C Position: 39 (position.label in template: 39.G) Reactivity: nanG Position: 40 (position.label in template: 40.C) Reactivity: 0C Position: 41 (position.label in template: 41.U) Reactivity: nanU Position: 42 (position.label in template: 42.U) Reactivity: nanU Position: 43 (position.label in template: 43.C) Reactivity: 0C Position: 44 (position.label in template: 44.G) Reactivity: nanG Position: 45 (position.label in template: 45.A) Reactivity: 1A Position: 46 (position.label in template: 46.U) Reactivity: nanU Position: 47 (position.label in template: 47.G) Reactivity: nanG Position: 48 (position.label in template: 48.G) Reactivity: nanG Position: 49 (position.label in template: 49.U) Reactivity: nanU Position: 50 (position.label in template: 50.U) Reactivity: nanU Position: 51 (position.label in template: 51.U) Reactivity: nanU Position: 52 (position.label in template: 52.A) Reactivity: 0.5A Position: 53 (position.label in template: 53.A) Reactivity: 0.5A Position: 54 (position.label in template: 54.A) Reactivity: 0A Position: 55 (position.label in template: 55.C) Reactivity: 0.5C Position: 56 (position.label in template: 56.G) Reactivity: nanG Position: 57 (position.label in template: 57.A) Reactivity: 0A Position: 58 (position.label in template: 58.A) Reactivity: 0A Position: 59 (position.label in template: 59.G) Reactivity: nanG Position: 60 (position.label in template: 60.C) Reactivity: 0C Position: 61 (position.label in template: 61.G) Reactivity: nanG Position: 62 (position.label in template: 62.G) Reactivity: nanG Position: 63 (position.label in template: 63.A) Reactivity: 0A Position: 64 (position.label in template: 64.A) Reactivity: 1A Position: 65 (position.label in template: 65.U) Reactivity: nanU Position: 66 (position.label in template: 66.U) Reactivity: nanU Position: 67 (position.label in template: 67.U) Reactivity: nanU Position: 68 (position.label in template: 68.C) Reactivity: 1C Position: 69 (position.label in template: 69.C) Reactivity: 0C Position: 70 (position.label in template: 70.G) Reactivity: nanG Position: 71 (position.label in template: 71.G) Reactivity: nanG Position: 72 (position.label in template: 72.G) Reactivity: nanG Position: 73 (position.label in template: 73.C) Reactivity: 0C Position: 74 (position.label in template: 74.A) Reactivity: 0.5A Position: 75 (position.label in template: 75.C) Reactivity: 0C Position: 76 (position.label in template: 76.U) Reactivity: nanU Position: 77 (position.label in template: 77.G) Reactivity: nanG Position: 78 (position.label in template: 78.U) Reactivity: nanU Position: 79 (position.label in template: 79.C) Reactivity: 0C Position: 80 (position.label in template: 80.C) Reactivity: 0C Position: 81 (position.label in template: 81.A) Reactivity: 1A Position: 82 (position.label in template: 82.U) Reactivity: nanU Position: 83 (position.label in template: 83.G) Reactivity: nanG Position: 84 (position.label in template: 84.U) Reactivity: nanU Position: 85 (position.label in template: 85.G) Reactivity: nanG Position: 86 (position.label in template: 86.G) Reactivity: nanG Position: 87 (position.label in template: 87.C) Reactivity: 0C Position: 88 (position.label in template: 88.A) Reactivity: 0A Position: 89 (position.label in template: 89.G) Reactivity: nanG Position: 90 (position.label in template: 90.G) Reactivity: nanG Position: 91 (position.label in template: 91.C) Reactivity: 0C Position: 92 (position.label in template: 92.C) Reactivity: 0C Position: 93 (position.label in template: 93.C) Reactivity: 0C Position: 94 (position.label in template: 94.U) Reactivity: nanU Position: 95 (position.label in template: 95.G) Reactivity: nanG Position: 96 (position.label in template: 96.U) Reactivity: nanU Position: 97 (position.label in template: 97.C) Reactivity: 1C Position: 98 (position.label in template: 98.C) Reactivity: 0C Position: 99 (position.label in template: 99.C) Reactivity: 0C Position: 100 (position.label in template: 100.C) Reactivity: 0C Position: 101 (position.label in template: 101.G) Reactivity: nanG Position: 102 (position.label in template: 102.A) Reactivity: nanA Position: 103 (position.label in template: 103.C) Reactivity: nanC Position: 104 (position.label in template: 104.G) Reactivity: nanG Position: 105 (position.label in template: 105.A) Reactivity: nanA Position: 106 (position.label in template: 106.U) Reactivity: nanU Position: 107 (position.label in template: 107.A) Reactivity: nanA Position: 108 (position.label in template: 108.U) Reactivity: nanU Position: 109 (position.label in template: 109.C) Reactivity: nanC Position: 110 (position.label in template: 110.G) Reactivity: nanG Position: 111 (position.label in template: 111.C) Reactivity: nanC Position: 112 (position.label in template: 112.G) Reactivity: nanG Position: 113 (position.label in template: 113.C) Reactivity: nanC Position: 114 (position.label in template: 114.C) Reactivity: nanC Position: 115 (position.label in template: 115.G) Reactivity: nanG Position: 116 (position.label in template: 116.G) Reactivity: nanG Position: 117 (position.label in template: 117.G) Reactivity: nanG Position: 118 (position.label in template: 118.A) Reactivity: nanA Position: 119 (position.label in template: 119.U) Reactivity: nanU Position: 120 (position.label in template: 120.C) Reactivity: nanC Position: 121 (position.label in template: 121.G) Reactivity: nanG Position: 122 (position.label in template: 122.G) Reactivity: nanG Position: 123 (position.label in template: 123.U) Reactivity: nanU Position: 124 (position.label in template: 124.U) Reactivity: nanU Position: 125 (position.label in template: 125.U) Reactivity: nanU Position: 126 (position.label in template: 126.U) Reactivity: nanU Position: 127 (position.label in template: 127.G) Reactivity: nanG Position: 128 (position.label in template: 128.A) Reactivity: nanA Position: 129 (position.label in template: 129.A) Reactivity: nanA Position: 130 (position.label in template: 130.G) Reactivity: nanG Position: 131 (position.label in template: 131.3')3' 10 20 30 50 100


srlA-srlE-srlB-srlD-gutM-srlR-gutQ



Position: 1811-1900, Conformation: #0







Retained alignments:


   NC_009792.1       CUGCGUGAACUGGGGC.AUAUC......................ACCCUGCGCUUCGACGGGCUGAA.............................................CG.AGGCGGAAUUU....CCCGG.C..ACCGUA..CACGU.................UGCGG...GGCC..AGUACCGGACG.ACAUCG.....................................CGC..CGGG..CUGUAU..UU.UGAAG
   NC_013523.1       UUGCG----GCGGGUC.AGGUC......................ACCCGAUGCACCGAAGAUCACCA.............................................UG.GCGCAGGGAGC....GGGGG.U..-CCGCU..CCUGC.................GGCAG...ACCC..UCCCGCAGC-G.GGUUCG.....................................CAA..CUGU..GGCGCU..C-.UGCAU
   NC_015968.1       CUGCGUGAACUGGGGC.AUAUC......................ACCCUGCGGUUCGACGGCC-AGC.............................................CGcAGGCGGAAUAU....CCCGG.C..ACUGUU..CAUGU.................GGAUG...GCCC..UGUUCCGCAGG.CUGUUA.....................................CCC..-CGG..----GC..UG.CACA-
   NC_018695.1       ---------------C.G----ugguuuccug.cgcggcgaauu--CCGGCGCGUCGGCAUUUCAUU.............................................CG.ACCCGGACGUG....CUGUG.C..ACCGUGcgCCUGU.................CGCGG...GCGC..UAUUCCCGUCG.GAAAAG.....................................CGUcaCGGG..CUCGAU..G-.--CGC
   NC_021870.1       CUGCGUGAACUGGGAC.AUAUC......................ACUCUGCGCUUCGACGGUCUGCA.............................................CG.AAGCGGAAUUU....CCCGG.C..ACCGUA..CAUGU.................UACGG...GGCC..AGUACCGGACA.AUAUCG.....................................CGC..CGGG..CUGUAU..UU.UAAAG
   NZ_AP018907.1     CAUGGUGAGCUGGGU-.-----......................GCCCGGCUCGCCGAUCGACUGGG.............................................CG.GCGAUGACGCC....CACCG.C..CUCGCC..CAUGU................uGACGG...G-CG..UGCCGCGGGCG.AGAUCG.....................................CGC..CCGU..AGCAGG..UG.CCGCA
   NZ_AP019007.1     CUGCGCGAGCUGGGCC.ACAUU......................ACCCUGCGUUUUGAUGGUCAACC.............................................GC.AGGCGGAAUAU....CCCGG.C..ACGGUU..CACGU.................GGCGG...GUCC..GGUUCCGCAGG.CUGUCA.....................................CCC..CAGG..CUGCAC..AU.U----
   NZ_AP019630.1     CUGCGCGAGCUGGGCC.ACAUC......................ACCCUGCGUUUCGACGGCC-AGC.............................................CGcAGGCCGAAUAU....CCCGG.C..ACGGUU..CACGU.................GGCGG...GCCC..GGUUCCGCAGG.CUGUCA.....................................CCC..CAGG..CUGCAC..GU.-----
   NZ_AP022508.1     CUGCGCGAGCUCGGCC.ACAUC......................ACCCUGCGCUUCGACGGCC-AGC.............................................CGcAGGCGGAAUAC....CCCGG.U..ACGGUU..CACGU.................GGAUG...GCCC..GGUUCCGC---.------agucugucaccccaggcugcacguuaaaauuuguu..---..GCGU..AAU---..--.-----
   NZ_AP022547.1     CUGCGCGAGCUGGGCC.AUAUC......................ACGCUGCGCUUUGACGGCCACCG.............................................CG.AAGCGGAAUUC....CCCGG.A..ACCGUA..CACGU.................GGCGG...GGCC..GGUGCCGGAAG.GUAUCG.....................................CCG..CCGG..CUGCGU..AC.UGAAA
   NZ_AP022599.1     CGUUGCGGGCCA----.-----gcaggauc......ucgucgcg---CUGCGGGUCGAUGGUCU---.............................................CG.ACCCGGAACUGuccgCCGGU.G..ACGGGC..--AGC.................GCCCG...CGCC..AGU-CCCGCCG.CGAAAC.....................................CGC..CGGG..AAUGUC..CU.UGACG
   NZ_AP022614.1     CGUCGGGCUCUAGGUC.CUGAC......................ACCAAGC--UGUGUUUGGAUCAG.............................................CC.CA-UGGAAGGU....UCGGC.A..ACCGUU..CAUAU.................GGCGG...CGCC..CGCGGCCAAG-.------..................................a..-UC..UGGG..AUCUGAucGC.CGACG
   NZ_CP004372.1     CGCCGCGAACCCGUUC.U--UC......................GACGAU-----------------cgcg....................................uggcc--.-----CAUGGC....UACCU.G..AUCGCG..UCCUU.................CGCGG...CGGG..UCUUUUCGUCG.AUCCCG.....................................CGC..CGGG..UCCGGU..UC.UGGCG
   NZ_CP007044.2     CUGCGUGAACUGGGCC.ACGUU......................ACCGUGCGUUUUGACGGCGAGGC.............................................CC.AGGCAGAAUUC....CCUGG.U..UCGAUC..CACGU.................UAUUG...GCCC..AACGCCUACCG.AUAUCC.....................................CGU..UAGG..--CAGU..A-.CGUUG
   NZ_CP012871.1     UUACGCGAGCUGGGGC.AUAUC......................ACGGUGCGUUUUGACGGCCAGAG.............................................CA.CCCCAGAGUUU....CCGGG.U..ACCGUU..CACGU................cCGCGG...GCC-..GGUACCGGAAG.AUAUCG.....................................CGC..CAGG..UUGUGA..AC.UGAAG
   NZ_CP014007.2     UUGCGCGAGCUGGGCC.AUAUC......................ACCCUGCGUUUUGAUGGGCAAAC.............................................GC.AGGCGGAAUAC....CCCGG.A..ACGGUA..CAUGU.................CGCAG...GCCC..GGUGCCAGACA.CUAUCG.....................................CCC..CCGG..CUGCAU..UU.UGAAA
   NZ_CP014070.2     UUACGUGAACUGGGGC.AUAUA......................ACCCUGCGCUUCGAUGGGCUGAG.............................................CG.AAGCGGAAUUU....CCCGG.C..ACCGUG..CAUGU.................CGCGG...GGCC..UGUACCGGACG.AUAUCG.....................................CAC..CGGG..CUGUAU..UU.UGAAG
   NZ_CP015064.1     CAGCG---GCAGGGUG.AUGAC......................GCCCUUGGCGCCGAUGAACAGCA.............................................CG.AUGCCGAAUU-....-CGUU.G..ACGGUC..AACA-a.............ca.GGCAG...AGGC..UGCCGCCGGCG.AUG-AG.....................................UGC..CGGG..AU-UGC..--.CGCCG
   NZ_CP016337.1     CUGCGUGAAUUGGGGC.AUAUC......................ACCCUGCGUUUCGAUGGGC-AAA.............................................CGcAGGCGGAAUAC....CCCGG.A..ACGGUA..CACGU.................CGCAG...GCCC..GGUGCCGGACG.GUAUCG.....................................CCC..CCGG..CUGCAU..UU.UGAAA
   NZ_CP016948.1     CUGCGCGAGCUGGGCC.AUAUC......................ACCGUACGCUUCGACGGCGAAGC.............................................CG.AAGCCGAAUUC....CCUGG.C..UCGAUC..CACGU.................AUCCG...GCCC..GACGCCGACCG.AUAUCC.....................................CGU..UGGG..--CAGC..A-.CGCUG
   NZ_CP017057.1     UGCCGCCGCCUCGCCC.AUCUC......................GUCGUGCGGGACG---GGGAAGG.............................................CG.CGUCGAAAUUC....AU---.C..ACCGUG..CGCGU.................GGCGG...GCGC..UGCCAGCAACG.AAAGCG...................................cgCGC..CGC-..AUCGGG..CU.CGCCA
   NZ_CP017184.1     CUGCGCGAGCUGGGCC.ACAUC......................ACCCUGCGUUUCGACGGCC-AGC.............................................CGcAGGCGGAAUAU....CCCGG.C..ACGGUU..CACGU.................AGCGG...GCCC..GGUUCCGC---.------aggccguuaccccaggcugcacguuaaaauuuguu..---..GCGU..AAU---..--.-----
   NZ_CP017279.1     CUGCGGGAGCUCGGCC.AUAUC......................ACUUUGCGUUUUGAUGGCCAGCC.............................................GC.AGGCGGAAUAU....CCCGG.U..ACGGUU..CAUGU.................GGAUG...GCCC..GGUUCCGCAGG.CUGUCA.....................................CCC..CAGG..CUGCAC..GU.UGAAG
   NZ_CP017476.1     UCACC-GACCUUGGCC.ACGCC......................GCCCUGGGCCUGGAUGGUUU---ccag....................................cauguUC.AGGCAGGCUUC....GUUGG.C..ACCGCC..A----ugggcagggccccaca.GGCAG...GCCA..CGCCGGC--GG.AAAUCG.....................................CG-..-GCA..AACGGG..UU.GGUGC
   NZ_CP019706.1     CUGCGCGACCUUGGGC.AUAUC......................ACCGUGCGUUUUGACGGUGCCAG.............................................UC.AGGCCGAGUUU....CCCGG.C..ACCGUU..CAUGU.................UGCCG...GCAG..CGCGCCGGCAU.CCAUUG.....................................AGC..CGGGccAAAAGU..UU.CGUAU
   NZ_CP020046.1     CCGCGGGUGAAGGGUC.AGGUC......................ACCCUGCAAUUC-----------gaaaagccgg.........................ugccgccgca-G.AA--GGUCUUC....CAGGC.G..-CUGCU..CACGC.................AGCUG...CGCC..UG---------.------g................................cg..---..----..GGCUUC..GC.CGUGG
   NZ_CP023525.1     UUGCAGGAGCUGGGGC.ACAUC......................ACCCUGCGCUUCGACGGCG-AGG.............................................CGcAGGCGGAAUAC....CCGGG.C..ACCGUU..CACGU................cAACG-...GCCCgcUGCCGCAG---.------ggcauug.....................agccggg..---..CU--..GCCAGC..U-.-----
   NZ_CP023559.1     CCCAUCUCGGCGUGUC.CUGUC......................ACGCUGCGCGCCAAUG-----AA.............................................UG.GCGCGCAGC-A....CCCGG.U..---GCC..GCUGC.................GACUU...-CCG..UCGCCCCGACG.ACAA--.....................................CGU..CGGG..AUACGC..GG.GUGU-
   NZ_CP029426.1     AUUCAUGUCCUGCGGC.AU---cacgc...........ggaacaCCGCCGCGCCGCCAUGGCCGUGC.............................................AG.CGGCUUCAUCA....CGACGgC..ACCGUG..CUUGU.................CGCGGaagGCGU..UGAUCUCGUCG.AGGUCG.....................................CG-..CGAG..AUCAGG..GU.-----
   NZ_CP033744.1     UUACGUGAACUCGGGC.AUAUC......................ACUCUGCGCUUUGACGGACUGAG.............................................UG.AAGCGGAAUUC....CCCGG.U..ACCGUA..CACGU.................UGCAG...GUCC..CGUACCGGACG.GUAUUA.....................................CGC..CGGG..CUGUAU..UU.UGAAG
   NZ_CP033844.1     CUGCGCGAGCUGGGCC.AUAUC......................ACGCUGCGCUUUGACGGGCACCG.............................................CG.AAGCGGAAUUC....CCCGG.G..ACCGUA..CACGU.................GGCGG...GCCC..GGUGCCGGAAG.GCAUCG.....................................CCA..CCGG..CUGCGU..AC.UGAAA
   NZ_CP034036.1     CUGCGUGAACUGGGUC.AUAUC......................ACCAUCCGCUUUGACGGCGCUGC.............................................CG.AAGCAGAAUUU....CCCGG.CucGCUGCA..--CGU.................UGCAG...GU-A..AGCCGCCGACAgAUAUCC....................................aAGU..CGGC..---GGU..--.-----
   NZ_CP036175.1     CUGCGCGAGCUCGGCC.AUAUC......................ACGCUGCGUUUUGAUGGUCACAG.............................................CG.AAGCGGAAUUC....CCCGG.A..ACCGUC..CACGU.................GGCGG...GCCC..GGUGCCGGAAG.AGAUCG.....................................CCA..CCGG..CUGCGU..AC.UGAAA
   NZ_CP037864.1     UUACGAGAACUCGGGC.AUAUC......................ACCCUGCGUUUUGACGGACUGAG.............................................UG.AAGCGGAAUUC....CCCGG.C..ACCGUA..CACGU.................UGCAG...GGCC..CGUACCGGACG.GUAUCG.....................................CGC..CGGG..CUGUAU..UU.UGAAA
   NZ_CP038469.1     UUGCGCGAACUGGGGC.AUAUC......................ACCCUGCGCUUCGACGGACUAAG.............................................UG.AAGCAGAAUUU....CCCGG.C..ACCGUA..CACGU.................UGCGG...GGCC..UGUGCCGGACG.AUAUCG.....................................CGC..CGGG..CUGUAU..UU.UGAAG
   NZ_CP038662.1     CUGCGCGAGCUGGGCC.AUAUC......................ACCGUGCGCUUCGACGGCGAAGC.............................................CG.AAGCCGAAUUU....CCCGG.C..UCCAUC..CACGU.................AUCCG...GCCC..GACGCCGACCG.AUAUCC.....................................CGU..UGGG..--CAGC..A-.CGCUG
   NZ_CP040392.1     UUACGUGAGCUUGGCC.AUAUC......................ACCCUGCGUUUUGAUGGGCAAAC.............................................GC.AGGCGGAAUAC....CCCGG.A..ACGGUA..CAUGU.................CGCAG...GCCC..GGUGCCGGACA.CUAUCG.....................................CCC..CCGG..CUGCAU..UU.UGAAA
   NZ_CP041247.1     CUGCGCGAGCUGGGCC.AUAUC......................ACGCUGCGCUUUGAUGGUCAUCG.............................................CG.AAGCGGAGUUU....CCGGG.G..ACGGUC..CACGU.................GGCUG...GCCC..CGUGCCGGAGG.CAAUCG.....................................CCC..CCGG..CUGUAU..AU.UGAAA
   NZ_CP041925.1     CUGCGCGAGCUGGGCC.ACAUC......................ACCCUGCGCUUUGACGGCCAUCG.............................................UC.AGGCGGAGUUU....CCCGG.A..ACCGUU..CACGU.................CGCGG...GCCC..GGUACCGGACG.CCAUCG.....................................CGA..CCGG..CUGUGU..AC.UGAAA
   NZ_CP043318.1     CUGCGCGAGCUGGGCC.AUAUC......................ACCCUGCGUUUCGACGGUCGG-C.............................................CGcAGGCGGAAUAU....CCCGG.C..ACGGUU..CACGU.................GGACG...GCCC..CGUUCCGC---.------aggccgucaccccaggcugcacguuaaaauuuguu..---..GCGU..AAU---..--.-----
   NZ_CP044098.1     UUACGUGAACUCGGGC.AUAUC......................ACCCUGCGCUUUGACGGGCAGAG.............................................CG.AAGCGGAAUUC....CCCGG.C..ACUGUA..CACGU.................UGCGG...GCCC..CGUCCCGGACG.GUAUCA.....................................CCC..CGGG..CUGUAU..UU.UGAAG
   NZ_CP044101.1     UUACGUGAACUGGGGC.AUAUC......................ACCCUACGUUUUGACGGACUCAG.............................................CG.AAGCGGAAUUC....CCUGG.C..ACCGUA..CAUGU.................GGCGG...GCCC..UGUACCGGACG.AUAUCG.....................................CGC..CGGG..CUGUAU..UU.UGAAG
   NZ_CP045300.1     UUGCGCGAGUUGGGCC.AUAUC......................ACCCUGCGUUUCGAUGGGC-AAA.............................................CGcAGGCGGAAUAC....CCCGG.A..ACGGUA..CAUGU.................CGCAG...GCCC..GGUGCCGGACA.CUAUCG.....................................UCC..CCGG..CUGCAU..UU.UGAAA
   NZ_CP045771.1     UUACGUGAACUGGGGC.AUAUC......................ACUCUGCGUUUUGACGGACUGAG.............................................UG.AAGCGGAAUUU....CCCGG.C..ACCGUA..CACGU.................UGCGG...GCCC..CGUACCGGACG.GUAUCG.....................................CAC..CGGG..CUGUAU..UU.UGAAG
   NZ_CP045783.1     CUGCGCGAGCUGGGCC.AUAUC......................ACCCUGCGCUUCGACGGCCAUCG.............................................UG.AAGCGGAGUUU....CCCGG.A..ACUGUU..CACGU.................CGCCG...GCCC..GGUGCCGGACG.CUAUCG.....................................CGA..CCGG..CUGCGU..AC.UGAAA
   NZ_CP045845.1     CUGCGGGCUCUGGGAC.AUAUC......................ACACUGUGCUUCGACGGUAUGAG.............................................UG.AAGCGAAAUUU....CCGGG.C..ACCGUA..CACAU.................UGCGG...GGCC..UGCACCGGACG.ACAUCG.....................................CGC..CGGG..CUGUAU..UU.UGAAG
   NZ_CP050508.1     CUGCGCGAGCUGGGCC.AUAUC......................ACGCUGCGCUUCGACGGCCACCG.............................................CG.UGGCGGAGUUU....CCGGG.G..ACGGUU..CACGU.................GGCCG...GCCC..GGUACCGGAGG.CGAUCG.....................................CCC..CCGG..CUGUGU..AC.UGAAA
   NZ_CP051548.1     CUGCGCGAGCUUGGCC.AUAUU......................ACCCUGCGCUUCGAUGGAC-AGA.............................................CGcAGGCGGAAUAU....CCCGG.C..ACGGUA..CACGU.................CGCAG...GUGA..CGUGCCGGAAA.GCAUCA.....................................AUC..CUGG..UUGCAC..AC.UGAAA
   NZ_CP054027.1     ---CGUGGUCCGGGCC.-----gcacgggcuuggucgaaaccuuGCCUUGCGCGUCGACGACAUAAA.............................................CG.ACGCGUUCAUU....CUGAU.C..C-----..-----ga...........gcc.-----...GAUC..--GCCUCGUCC.-----G.....................................GGA..CGAG..AAUAGC..CU.UGUAG
   NZ_CP055055.1     CUUCGCGAACUGGGUC.AUGUC......................ACCCUGCGCUUCGAUGGUUUAAA.............................................CG.AAGCGGAAUUU....CCGGG.C..ACUGUC..CAUGU.................GGCAG...GCCC..UGUCCCCGACG.AUAUCG.....................................CGC..CGGG..AUCGGU..UU.UGAAG
   NZ_CP059903.1     GACCGCGACCUGCGCG.AUCUC......................GCGCUGCACGCCGUCGGUGAAGA.............................................CG.CCGCGCAGGGU....GCCGU.C..GCUGCC..GAAGU.................CGUAC...GACG..UGAGCUCGAC-.------gcccgc......................ggggacg..-GG..CGGG..GUCA--..--.-----
   NZ_CP060711.1     -------GGACGACG-.-----ccgucgac......gacgauggCGUCGGCGGGUUUC----AUGAA.............................................GA.ACACGGGAUUG....CCGCG.C..UCGGCC..UUCGA.................GGCCG...GCGC..CGCCGCGCCC-.AUUUCG.....................................--C..GCGC..GUGGUC..GG.CGAAG
   NZ_CP063373.1     CUUCCAGGGCUUGGCC.UGGUC......................GCCGUGCACGUUCGCGGUCG--A.............................................GU.AUGCGGAGACU....CCGGG.C..AUGACG..CUUGU.................GGUCA...CCAC..CGA-CCAGCCG.CACC--cg...............................ag..CAA..CUGG..AUCGGC..CG.UGAGG
   NZ_CP063425.1     CUGCGUGAACUGGGCC.AUAUC......................ACCCUGCGUUUCGAUGGAC-AAA.............................................CGcAGGCGGAAUAC....CCAGG.A..ACGGUA..CACGU.................CGCAG...GCCC..GGUGCCGGACG.GUAUCG.....................................CCC..CCGG..CUGCAU..UU.UGAAA
   NZ_CP065838.1     CUGCGCGAGCUGGGCC.AUAUC......................ACCCUGCGCUUUGACGGCCAUCG.............................................CG.ACGCGGAGUUU....CCGGG.G..ACCGUC..CACGU.................GGCGG...GCCC..GGUGCCGGACG.CCAUUG.....................................CGC..CCGG..CUGCGU..AC.UGAAA
   NZ_CP068161.1     CCUCGCU----GGGCCaAUGUC......................ACCCGUGACUACACGGCAGAAAA.............................................GG.UAGCCGAGCUG....CAAGG.C..ACUGUC..G----ucgaagagcacacccu.GGCAC...GCCG..UGGCUCCGA--.-GAUCC.....................................UG-..UGGG..------..-A.CGAGG
   NZ_CP071070.1     UUACGUGAACUGGGGC.AUAUC......................ACCCUGCGCUUCGACGGACUGAA.............................................CG.AAGCGGAAUUU....CCCGG.C..ACCGUG..CACGU.................CGCGG...GCCC..CGUACCGGACG.AUAUCG.....................................CGC..CGGG..CUGUAU..UU.UGAAG
   NZ_CP071320.1     CUGCGCGAACUGGGCC.ACAUC......................ACCGUGCGCUUCGACGGCGAAGC.............................................CG.AAGCCGAAUUC....CCCGG.C..UCGAUC..CACGU.................UUCCG...GCCC..GACGCCGACCG.AUAUCC.....................................CGU..UGGG..--CAGC..-A.CGCUG
   NZ_CP073236.1     CUGCGCGAGCUGGGCC.AUAUC......................ACGCUGCGCUUUGACGGUCACCG.............................................CG.AAGCGGAAUUC....CCCGG.A..ACCGUA..CACGU.................GGCUG...GCCC..GGUGCCGGAGG.GCAUCG.....................................CCG..CCGG..CUGCGU..AC.UGAAA
   NZ_CP074376.1     ----------------.--CCA......................ACGCAGCGCGUCGAGGA------uggccucguagcucuccuggcugucccgcgcggcgucgguguccuCG.AUGCGGAAGAC....GAAUG.C..GCCGCC..GGUAU.................GGCGG...GCGU..AGGCCCAGUUGaACAGCG....................................cCGU..CCGG..ACCAA-..CC.CGACG
   NZ_CP077262.1     UUACGUGAACUGGGAC.AUAUC......................ACCCUGCGUUUUGACGGACUGAG.............................................UG.AAGCGGAAUUC....CCCGG.C..ACCGUA..CACGU.................UGCAG...GCCC..CGUACCGGACG.GUAUCG.....................................UGC..CGGG..CUGUAU..UU.UGAAG
   NZ_CP077392.1     CUGCGCGAGCUGGGGC.AUAUC......................ACCCUGCGUUUUGACGGGC----ag........................................ccg-C.AGGCGGAGUAU....CCCGG.C..ACGGUU..CACGU................uGAGGG...GCCG..GUUCCGCA---.------ggcugucacaccaggc..uguacguuaaaauuugu..---..UGC-..------..--.-----
   NZ_CP082141.1     CUGCGUGAACUGGGCC.AUAUC......................ACGGUGAAGUUUGAUGGUGCGAC.............................................CA.CAGCCGAAUCC....CCUGG.C..ACAGUG..CAUGU.................UGCAG...GCCG..AGUGCCAGCCG.GCAUUA.....................................AAC..CGGGucAGAAGU..UU.CGUGU
   NZ_CP082833.1     UUACGUGAACUGGGCC.AUAUC......................ACCCUGCGCUUCGACGGACUGAA.............................................CG.AAGCGGAAUUC....CCCGG.C..ACCGUG..CACGU.................UGCGG...GGCC..CGUACCGGACG.AUAUCG.....................................CGC..CGGG..CUGUAU..UU.UGAAG
   NZ_CP084874.1     CUGCGCGAGCUGGGCC.ACAUC......................ACCCUGCGCUUUGACGGCCAUCG.............................................UG.AAGCGGAGUUC....CCCGG.U..ACCGUC..CAUGU.................GGCGG...GCCC..GGUGCCGGACG.CCAUCG.....................................CGC..CCGG..CUGCGU..AC.UGAAA
   NZ_CP085627.1     CUGCGUGAACUGGGCC.AUAUC......................ACGGUGAAGUUUGAUGGUGCCAC.............................................CA.CAGCCGAAUUC....CCUGG.C..ACAGUG..CAUGU.................UGCAG...GCCA..GGUGCCAGCCG.GCAUUA.....................................AAC..CGGGucAGAAGU..UU.CGUGU
   NZ_CP089919.1     CUGCGCGAACUGGGGC.AUAUC......................ACCCUGCGGUUCGACGGCAGCGC.............................................CG.AAGCUGAAUUU....CCCGG.C..AGCGUC..CAUGU.................AAAAG...GCAC..CACGCCCGACG.AUAUCC.....................................CGC..UGGG..CAGCAU..AU.UGAAA
   NZ_CP091779.1     CUGCGCGAGCUGGGCC.ACAUC......................ACCCUGCGUUUCGACGGCCAGCU.............................................GC.AGGCCGAAUAU....CCCGG.C..ACGGUU..CACGU.................CGCGG...GCCC..GGUUCCGCAGG.CUGUCA.....................................CCC..CAGG..CUGCAC..GU.-----
   NZ_CP093328.1     CUGCGCGAGCUGGGGC.AUAUC......................ACCCUGCGUUUUGACGGCAGUGC.............................................CG.AGGCUGAGUUU....CCCGG.C..AGCGUA..CAUGU.................AAAAG...GCAC..CACGCCCGACG.AUAUUC.....................................CGC..UGGG..CAGCGU..AU.UGAAA
   NZ_CP093332.1     UUACAGGAACUGGGGC.AUAUC......................ACCCUGCGUUUCGACGGUG-AAG.............................................CGcAGGCGGAAUAC....CCGGG.U..ACCGUC..CAUGU................uAACGG...GCCA..CUAC-------.------cucacaacau..............ugaaacgggcu..---..----..GCCAGU..--.UGAAG
   NZ_CP093334.1     CUGCGUGAGCUUGGCC.AUAUC......................ACGCUGCGCUUUGAUGGCCAUAG.............................................CG.AAGCAGAGUUU....CCGGG.G..ACGGUC..CACGU.................GUCUG...GCCC..CGUGCCGGACG.CGAUCG.....................................CAC..CCGG..CUGUAU..AU.UGAAA
   NZ_CP096201.1     UUACGUGAACUGGGGC.AUAUC......................ACUCUGUGCUUCGAUGGACGAAA.............................................CG.AAGCGAAAUUU....CCCGG.C..ACGGUA..CACCU.................CGCUG...GGUC..AACGCCGGACG.AUAUCG.....................................CAC..CGGG..AACCAU..UU.UGCAG
   NZ_CP102272.1     GUUUUCCAGCAGCCUG.AAAUU......................AUCCUGUCUGCCC----UUUAAA.............................................CG.GCUGGGAUCAA....CCGCG.C..GCCGUC..CAUAA.................GACGG...CCGC..GU-UUU-CAGG.AUAUUG.....................................GCC..AGAA..AGCUGC..UGcGGAAC
   NZ_CP107077.1     UUGCGCGAGCUGGGCC.AUAUC......................ACCCUGCGUUUCGAUGGGC-AGA.............................................CGcAGGCGGAGUUU....CCGGG.C..ACGGUG..CACGU.................CGCCG...GCCC..GGUACCGGACG.CUGUCG.....................................CGC..CGGG..CUGCAU..UU.UAAAA
   NZ_LR134485.1     UUACGUGAACUGGGGC.AUAUC......................ACCCUGCGUUUUGACGGACUGAG.............................................CG.AAGCGGAAUUC....CCCGG.C..ACCGUA..CACGU.................UGCAG...GCCC..CGUACCGGACG.GUAUCG.....................................CGC..CGGG..CUGUAU..UU.UGAAG
   NZ_LT906479.1     CUGCGUGAGCUGGGGC.ACGUC......................ACCGUGCGCUUCGACGGUGAAAG.............................................CC.AGGCCGAAUUU....CCGGG.U..UCGAUC..CACGU.................AUCCG...GCCC..AACGCCGGCCG.AUAUUC.....................................CGG..UCGG..--CAGC..A-.CGCUG


   Structure         (((((.(((((((((.............................))))..(((((((.......................................................)).)))))............(((.(...(((((........................)))))...))))......((((.((............................................))...)))).....)))..)).)))))


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srlA-srlE-srlB-srlD-gutM-srlR-gutQ



Position: 1811-1900, Conformation: #0







97% 90% 75% 50% Nucleotide present N N N Nucleotide identify E < 0.1 Base-pair covariation E < 0.05 Helix-level covariation 97% 90% 75%

Y C R C Y G G C Y Y R C Y Y Y G C R Y Y Y G R Y G R Y R R G C R G A R Y C Y G Y R C G Y Y Y G Y R C G R R Y R Y G R R Y R 5'