sdhC-sdhD-sdhA-sdhB-sucA-sucB-sucC-sucD-sdhX



Position: 6307-6461, Conformation: #1







DMS reactivity > 1.0 0.0 0.4 0.7 G/U/No data
Position: 0 (position.label in template: 0.5')5' Position: 1 (position.label in template: 1.A) Reactivity: nanA Position: 2 (position.label in template: 2.C) Reactivity: nanC Position: 3 (position.label in template: 3.U) Reactivity: nanU Position: 4 (position.label in template: 4.C) Reactivity: nanC Position: 5 (position.label in template: 5.U) Reactivity: nanU Position: 6 (position.label in template: 6.A) Reactivity: nanA Position: 7 (position.label in template: 7.C) Reactivity: nanC Position: 8 (position.label in template: 8.C) Reactivity: nanC Position: 9 (position.label in template: 9.C) Reactivity: nanC Position: 10 (position.label in template: 10.G) Reactivity: nanG Position: 11 (position.label in template: 11.U) Reactivity: nanU Position: 12 (position.label in template: 12.U) Reactivity: nanU Position: 13 (position.label in template: 13.C) Reactivity: nanC Position: 14 (position.label in template: 14.C) Reactivity: nanC Position: 15 (position.label in template: 15.C) Reactivity: nanC Position: 16 (position.label in template: 16.G) Reactivity: nanG Position: 17 (position.label in template: 17.C) Reactivity: nanC Position: 18 (position.label in template: 18.A) Reactivity: nanA Position: 19 (position.label in template: 19.U) Reactivity: nanU Position: 20 (position.label in template: 20.A) Reactivity: nanA Position: 21 (position.label in template: 21.A) Reactivity: nanA Position: 22 (position.label in template: 22.A) Reactivity: nanA Position: 23 (position.label in template: 23.G) Reactivity: nanG Position: 24 (position.label in template: 24.C) Reactivity: nanC Position: 25 (position.label in template: 25.G) Reactivity: nanG Position: 26 (position.label in template: 26.A) Reactivity: nanA Position: 27 (position.label in template: 27.U) Reactivity: nanU Position: 28 (position.label in template: 28.G) Reactivity: nanG Position: 29 (position.label in template: 29.C) Reactivity: nanC Position: 30 (position.label in template: 30.A) Reactivity: nanA Position: 31 (position.label in template: 31.G) Reactivity: nanG Position: 32 (position.label in template: 32.G) Reactivity: nanG Position: 33 (position.label in template: 33.A) Reactivity: nanA Position: 34 (position.label in template: 34.A) Reactivity: nanA Position: 35 (position.label in template: 35.G) Reactivity: nanG Position: 36 (position.label in template: 36.U) Reactivity: nanU Position: 37 (position.label in template: 37.G) Reactivity: nanG Position: 38 (position.label in template: 38.U) Reactivity: nanU Position: 39 (position.label in template: 39.U) Reactivity: nanU Position: 40 (position.label in template: 40.G) Reactivity: nanG Position: 41 (position.label in template: 41.C) Reactivity: 0C Position: 42 (position.label in template: 42.A) Reactivity: 0A Position: 43 (position.label in template: 43.G) Reactivity: nanG Position: 44 (position.label in template: 44.C) Reactivity: 1C Position: 45 (position.label in template: 45.A) Reactivity: 0.5A Position: 46 (position.label in template: 46.G) Reactivity: nanG Position: 47 (position.label in template: 47.U) Reactivity: nanU Position: 48 (position.label in template: 48.U) Reactivity: nanU Position: 49 (position.label in template: 49.U) Reactivity: nanU Position: 50 (position.label in template: 50.G) Reactivity: nanG Position: 51 (position.label in template: 51.C) Reactivity: 0C Position: 52 (position.label in template: 52.U) Reactivity: nanU Position: 53 (position.label in template: 53.C) Reactivity: 0C Position: 54 (position.label in template: 54.A) Reactivity: 1A Position: 55 (position.label in template: 55.C) Reactivity: 0.5C Position: 56 (position.label in template: 56.G) Reactivity: nanG Position: 57 (position.label in template: 57.U) Reactivity: nanU Position: 58 (position.label in template: 58.C) Reactivity: 0.5C Position: 59 (position.label in template: 59.A) Reactivity: 1A Position: 60 (position.label in template: 60.A) Reactivity: 0.5A Position: 61 (position.label in template: 61.G) Reactivity: nanG Position: 62 (position.label in template: 62.G) Reactivity: nanG Position: 63 (position.label in template: 63.A) Reactivity: 0.5A Position: 64 (position.label in template: 64.U) Reactivity: nanU Position: 65 (position.label in template: 65.U) Reactivity: nanU Position: 66 (position.label in template: 66.U) Reactivity: nanU Position: 67 (position.label in template: 67.U) Reactivity: nanU Position: 68 (position.label in template: 68.G) Reactivity: nanG Position: 69 (position.label in template: 69.U) Reactivity: nanU Position: 70 (position.label in template: 70.C) Reactivity: 0.5C Position: 71 (position.label in template: 71.U) Reactivity: nanU Position: 72 (position.label in template: 72.G) Reactivity: nanG Position: 73 (position.label in template: 73.G) Reactivity: nanG Position: 74 (position.label in template: 74.U) Reactivity: nanU Position: 75 (position.label in template: 75.G) Reactivity: nanG Position: 76 (position.label in template: 76.C) Reactivity: 0.5C Position: 77 (position.label in template: 77.C) Reactivity: 0.5C Position: 78 (position.label in template: 78.A) Reactivity: 1A Position: 79 (position.label in template: 79.G) Reactivity: nanG Position: 80 (position.label in template: 80.G) Reactivity: nanG Position: 81 (position.label in template: 81.A) Reactivity: 0A Position: 82 (position.label in template: 82.A) Reactivity: 1A Position: 83 (position.label in template: 83.G) Reactivity: nanG Position: 84 (position.label in template: 84.A) Reactivity: 1A Position: 85 (position.label in template: 85.G) Reactivity: nanG Position: 86 (position.label in template: 86.C) Reactivity: 0C Position: 87 (position.label in template: 87.C) Reactivity: 0C Position: 88 (position.label in template: 88.G) Reactivity: nanG Position: 89 (position.label in template: 89.C) Reactivity: 0.5C Position: 90 (position.label in template: 90.U) Reactivity: nanU Position: 91 (position.label in template: 91.C) Reactivity: 0C Position: 92 (position.label in template: 92.A) Reactivity: 0A Position: 93 (position.label in template: 93.A) Reactivity: 1A Position: 94 (position.label in template: 94.C) Reactivity: 1C Position: 95 (position.label in template: 95.C) Reactivity: 1C Position: 96 (position.label in template: 96.A) Reactivity: 0.5A Position: 97 (position.label in template: 97.G) Reactivity: nanG Position: 98 (position.label in template: 98.G) Reactivity: nanG Position: 99 (position.label in template: 99.G) Reactivity: nanG Position: 100 (position.label in template: 100.C) Reactivity: 0.5C Position: 101 (position.label in template: 101.G) Reactivity: nanG Position: 102 (position.label in template: 102.C) Reactivity: 0.5C Position: 103 (position.label in template: 103.A) Reactivity: 0.5A Position: 104 (position.label in template: 104.U) Reactivity: nanU Position: 105 (position.label in template: 105.G) Reactivity: nanG Position: 106 (position.label in template: 106.G) Reactivity: nanG Position: 107 (position.label in template: 107.U) Reactivity: nanU Position: 108 (position.label in template: 108.A) Reactivity: 0A Position: 109 (position.label in template: 109.C) Reactivity: 1C Position: 110 (position.label in template: 110.U) Reactivity: nanU Position: 111 (position.label in template: 111.G) Reactivity: nanG Position: 112 (position.label in template: 112.C) Reactivity: 0C Position: 113 (position.label in template: 113.A) Reactivity: 1A Position: 114 (position.label in template: 114.G) Reactivity: nanG Position: 115 (position.label in template: 115.C) Reactivity: 0.5C Position: 116 (position.label in template: 116.C) Reactivity: 0C Position: 117 (position.label in template: 117.A) Reactivity: 0A Position: 118 (position.label in template: 118.G) Reactivity: nanG Position: 119 (position.label in template: 119.C) Reactivity: 0C Position: 120 (position.label in template: 120.A) Reactivity: 1A Position: 121 (position.label in template: 121.U) Reactivity: nanU Position: 122 (position.label in template: 122.C) Reactivity: 1C Position: 123 (position.label in template: 123.A) Reactivity: 0A Position: 124 (position.label in template: 124.U) Reactivity: nanU Position: 125 (position.label in template: 125.U) Reactivity: nanU Position: 126 (position.label in template: 126.U) Reactivity: nanU Position: 127 (position.label in template: 127.C) Reactivity: 0.5C Position: 128 (position.label in template: 128.C) Reactivity: 0.5C Position: 129 (position.label in template: 129.G) Reactivity: nanG Position: 130 (position.label in template: 130.U) Reactivity: nanU Position: 131 (position.label in template: 131.G) Reactivity: nanG Position: 132 (position.label in template: 132.A) Reactivity: 1A Position: 133 (position.label in template: 133.A) Reactivity: 0.5A Position: 134 (position.label in template: 134.G) Reactivity: nanG Position: 135 (position.label in template: 135.U) Reactivity: nanU Position: 136 (position.label in template: 136.G) Reactivity: nanG Position: 137 (position.label in template: 137.A) Reactivity: 1A Position: 138 (position.label in template: 138.U) Reactivity: nanU Position: 139 (position.label in template: 139.U) Reactivity: nanU Position: 140 (position.label in template: 140.C) Reactivity: 0C Position: 141 (position.label in template: 141.C) Reactivity: 1C Position: 142 (position.label in template: 142.G) Reactivity: nanG Position: 143 (position.label in template: 143.U) Reactivity: nanU Position: 144 (position.label in template: 144.U) Reactivity: nanU Position: 145 (position.label in template: 145.U) Reactivity: nanU Position: 146 (position.label in template: 146.G) Reactivity: nanG Position: 147 (position.label in template: 147.G) Reactivity: nanG Position: 148 (position.label in template: 148.G) Reactivity: nanG Position: 149 (position.label in template: 149.G) Reactivity: nanG Position: 150 (position.label in template: 150.C) Reactivity: 0C Position: 151 (position.label in template: 151.U) Reactivity: nanU Position: 152 (position.label in template: 152.U) Reactivity: nanU Position: 153 (position.label in template: 153.C) Reactivity: 0C Position: 154 (position.label in template: 154.U) Reactivity: nanU Position: 155 (position.label in template: 155.C) Reactivity: 0C Position: 156 (position.label in template: 156.U) Reactivity: nanU Position: 157 (position.label in template: 157.G) Reactivity: nanG Position: 158 (position.label in template: 158.C) Reactivity: 0C Position: 159 (position.label in template: 159.G) Reactivity: nanG Position: 160 (position.label in template: 160.U) Reactivity: nanU Position: 161 (position.label in template: 161.U) Reactivity: nanU Position: 162 (position.label in template: 162.A) Reactivity: nanA Position: 163 (position.label in template: 163.U) Reactivity: nanU Position: 164 (position.label in template: 164.G) Reactivity: nanG Position: 165 (position.label in template: 165.C) Reactivity: nanC Position: 166 (position.label in template: 166.A) Reactivity: nanA Position: 167 (position.label in template: 167.G) Reactivity: nanG Position: 168 (position.label in template: 168.G) Reactivity: nanG Position: 169 (position.label in template: 169.C) Reactivity: nanC Position: 170 (position.label in template: 170.C) Reactivity: nanC Position: 171 (position.label in template: 171.G) Reactivity: nanG Position: 172 (position.label in template: 172.C) Reactivity: nanC Position: 173 (position.label in template: 173.C) Reactivity: nanC Position: 174 (position.label in template: 174.C) Reactivity: nanC Position: 175 (position.label in template: 175.G) Reactivity: nanG Position: 176 (position.label in template: 176.G) Reactivity: nanG Position: 177 (position.label in template: 177.C) Reactivity: nanC Position: 178 (position.label in template: 178.C) Reactivity: nanC Position: 179 (position.label in template: 179.U) Reactivity: nanU Position: 180 (position.label in template: 180.C) Reactivity: nanC Position: 181 (position.label in template: 181.C) Reactivity: nanC Position: 182 (position.label in template: 182.G) Reactivity: nanG Position: 183 (position.label in template: 183.C) Reactivity: nanC Position: 184 (position.label in template: 184.C) Reactivity: nanC Position: 185 (position.label in template: 185.U) Reactivity: nanU Position: 186 (position.label in template: 186.C) Reactivity: nanC Position: 187 (position.label in template: 187.U) Reactivity: nanU Position: 188 (position.label in template: 188.C) Reactivity: nanC Position: 189 (position.label in template: 189.C) Reactivity: nanC Position: 190 (position.label in template: 190.G) Reactivity: nanG Position: 191 (position.label in template: 191.G) Reactivity: nanG Position: 192 (position.label in template: 192.C) Reactivity: nanC Position: 193 (position.label in template: 193.G) Reactivity: nanG Position: 194 (position.label in template: 194.G) Reactivity: nanG Position: 195 (position.label in template: 195.U) Reactivity: nanU Position: 196 (position.label in template: 196.3')3' 10 20 30 50 100 150


sdhC-sdhD-sdhA-sdhB-sucA-sucB-sucC-sucD-sdhX



Position: 6307-6461, Conformation: #1







Retained alignments:


   NC_002977.6       G..C..GG..A...A...U....G......A......C......U..U..U.C.U.G...G.C..G..A..U....G....CU..G.A...A.....A..C..G..C..UA.........................U..C..C...C.....A..A..U..CU.G..CA......G......GAAC..UGAUCUGGUGCCAGGAAGA.GCCGGAAAACCA.................................................GGG.GGC..CUGGCAUCAA.A.......................................................UC.AA..A.C...AC..C..GUU..U...C..C....C..U............G.G....C...-...-......-......A.U...U..C...U...-..-....--...G.G.Ac......cG...U...C...C..C........U......U.C.....G.A.C...A........U.C.G..G...C.....--..--.-....-....-..-...-uaugccggu.......................ccgccgaugu...-.-...-.-..-....CCG.CC.U.C.U...CC............................G.G.C..G.G
   NC_003317.1       G..G..CC..A...A...G....-......-......-......G..C..G.C.U.C...-.-..-..-..-....-....--..-.-...-.....-..A..-..-..--ucaacga.........gcugucg..C..G..C...U.....U..C..C..GU.C..AUg....cG......GAAA..UGGUCUGGUGCCAGGAAGA.GCCGAAGAACAU.................................................GGG.CGC..AUGGU-----.-cguucaucgacccg........................uaucuggagugggu...AC.UG..G.C...G-..C..AUA..U...CgaC....G..C............C.A....A...G...C......A......C.C...A..G...C...G..C....--...-.-.-........-...-...-...-..-........-......G.U.....G.C.G...C........U.A.U..G...C.....GG..GC.C....G....U..C...C.............................................G.G...C.C..G....CCG.CA.U.C.G...CC............................U.G.C..A.A
   NC_003910.7       G..A..AC..A...-...A....G......A......G......C..U..A.C.A.A...G.C..U..G..U....A....UU..G.A...A.....A..G..A..A..UA.........................C..C..A...G.....C..A..U..GU.G..AA......G......CAAU..UUGUUUGGUGUCAGGAAGA.GCCGCAAAACCA.................................................AGG.UGC..UUGGUAUUGU.U.......................................................CG.CA..G.C...AU..A..ACU..U...U..A....G..A............G.C....A...G...C......U......A.U...C..C...C...U..G....AA...G.G.U........A...C...U...A..C........G......U.U.....G.A.C...U........U.A.U..G...C.....UG..GG.C....G....U..A...A.............................................G.G...C.U..U....CUG.CA.G.C.U...CC............................A.G.C..U.G
   NC_004347.2       A..C..AU..G...A...A....G......A......A......A..U..G.G.U.U...G.C..A..G..C....A....UU..-.-...A.....G..C..U..G..AC.........................U..AccA...A.....C..A..U..GU.G..AA......G......GAUU..UUGUUUGGUGUCAGGAAGA.GCCGCAAAACCA.................................................AGG.UGC..UUGGUACUCU.A.......................................................GC.CA..A.C...AU..C..ACU..U...U..U....G..G............G.C....U...G...C......U......A.U...C..C...C...U..G....CG...G.G.A........G...C...-...-..-........A......A.A.....A.C.-...U........C.A.C..U...U.....AC..GC.U....G....G..C...-c........................................gugaA.G...C.G..U....CUG.CU.G.C.A...CC............................A.G.C.uU.G
   NC_004603.1       G.aU..GG..A...A...G....A......A......G......U..A..C.A.A.G...C.G..G..C..U....A....UU..G.C...U.....-..C..A..A..UA.........................C..A..C...U.....A..A..C..GU.U..GA......A......GACU..UCGUGUGGUGUCAGGAAGA.GCCUCAGAACCA.................................................AGG.UGC..UUGGUACUGU.A.......................................................GU.CA..A.C...AU..A..ACU..U...C..C....G..U............G.C....C...G...C......U......A.U...U..C...C...U..G....CA...G.G.U........G...C...A...G..A........U......C.U.....U.A.A...A........U.A.C..G...C.....AG..GU.C....G....C..C...C.............................................A.G...C.U..U....CUG.CU.U.C.G...CC............................A.G.C..A.G
   NC_004757.1       U..C..AC..G...A...A....G......A......U......U..U..U.C.A.G...G.C..A..G..A....A....A-..U.C...A.....A..C.cG..G..UA.........................C..G..A...C.....C..A..U..GC.U..AC......G......GAAA..UCCUCUGGUGUCAGGAAGA.GCCAGGCAACCA.................................................GGG.UGC..AUGGCACCGU.A.......................................................UC.CA..G.C...AC..U..AUC..U...G..U....U..G............C.G....A...C...A......U......A.U...G..C...-...-..-....--...-.G.G........C...C...U...G..A........U......C.A.....G.A.U...A........C.U.C..G...G.....G-..--.-....-....-..-...-uacgcacuu........................cgccccuca...-.-...-.-..U....CUG.CU.U.C.C...CC............................C.U.C..A.G
   NC_005126.1       U..C..AU..C...A...A....G......A......U......G..U..U.C.A.G...U.C..A..A..C....A....CU..G.G...A.....A..C..A..G..UA.........................U..G..C...U.....C..A..U..GU.A..CA......U......GAUU..UUGUCUGGUGCCAGGAAGA.GCCAUUAAAUCA.................................................GGG.GGC..CUGGUAUUGC.A.......................................................GU.CA..G.C...AC..A..ACU..U...C..C....G..U............G.A....A...G...U......G......A.U...C..C...C...G..U....UC...G.G.G........G...C...U...U..C........U......U.U.....A.C.G...U........U.A.U..G...C.....AG..GU.C....G....U..C...C.............................................U.G...C.G..U....CUG.CU.U.C.C...CC............................G.G.C..A.G
   NC_006512.1       U..G..CG..G...A...A....G......A......A......G..U..G.G.C.A...-.-..G..A..A....A....UU..A.U...G.....A..A..A..G..AU.........................U..A..U...Ca...gC..A..C..GU.U..AA......A......GAUU..UUGUCUGGUGUCAGGAAGA.GCCUCAGAACCA.................................................GGG.UGC..AUGGUAUAGC.A.......................................................GC.CA..G.C...AU..C..ACU..U...C..U....G..G............G.C....C...G...C......A......A.U...U..C...C...G..A....AA...G.G.A........G...-...-...-..C........U......C.A.....G.U.U...G........U.C.U..U...A.....UC..GU.G....G....U..C...-gu......................................ag...U.G...C.G..U....CAG.CC.G.C.A...CC............................G.G.C..G.G
   NC_006513.1       G..G..CC..G...C...U....G......C......C......U..U..C.G.G.C...G.C..C..G..C...cG....UC..-.G...A.....U..C..A..G..UU.........................C..C..C...G.....A..A..U..GC.C..CG......G......GAAG..UCGUGUGGGCACAGGAGGA.GCCGCGCAACCA.................................................GGG.CGC..CUGGUACUG-.-gcucg.........................................caucgc...GC.CA..G.C...AC..C..---..-...U..C....G..U............G.A....A...U...G......U......G.C...U..C...G...G..A....UC...G.A.Agcg..caaG...C...U...U..C........U......G.C.....U.G.G...U........-.-.G..U...C.....--..G-.C....G....U..C...C.............................................G.G...C.A..G....CCG.CA.U.C.G...CC............................U.G.C..G.G
   NC_007292.1       U..U..AU..A...C...A....A......A......U......A..U..A.C.A.G...G.U..U..A..U....U....UU..-.-...A.....G..C..U..U..CU.........................U..A..U...U.....CgaA..U..GU.A..CA......G......GAUU..UUACUUGGUGUCAAGAAGA.ACCUAAAAAUCA.................................................AGG.AGC..UUGGUAUUAC.A.......................................................UA.CA..A.C...AU..U..GUU..U...U..C....A..U............A.A....C...A...U......A......A.U...A..U...C...U..A....AA...A.A.U........G...U...U...A..C........G......U.U.....A.A.A...U........U.A.U..A...U.....AG..GA.C....-....-..-...-.............................................G.U...C.C..UgaugCUG.CU.G.C.A...CC............................U.G.C..A.G
   NC_007484.1       C..C..AG..C...A...G....C......A......A......U..U..A.G.A.G...A.G..A..G..A....G....CU..U.G...A.....A..C..G..U..UA.........................C..C..G...C.....A..A..G..GC.C..AG......G......GAGA..UUGUCUGGUGUCAAGAAGA.ACCUCAAAACCA.................................................AGG.AGC..AUGGGAUCAA.C.......................................................UU.CA..U.C...GU..C..CUU..U...G..C....A..A............G.G....A...UguuU......G......A.G...U..C...G...A..A....AC...C.A.G........U...C...C...U..U........G......C.A.....U.U.A...C........A.C.A..G...G.....CC..GG.G....-....-..-...C.............................................C.U...C.G..U....CGG.CG.G.C.A...CC............................C.G.C..G.G
   NC_007614.1       G..C..AU..G...A...U....G......A......C......U..U..C.C.A.G...G.C..C..G..A....A....GU..C.G...A.....G..C..G..C..UA.........................U..C..C...G.....C..A..C..GC.C..AG......A......GACA..UUCUCUGGUGCCAGGAAGA.ACCCCGCAAUCA.................................................GGG.GGC..GUGGCACCGU.A.......................................................UC.CA..G.C...AC..U..ACC..U..gC..U....G..C............G.U....C...A...C......A......A.G...-..-...C...G..C....GC...G.G.A........U...C..aG...GucC........U......C.G.....G.G.G...A........G.U.C..G...C.....--..UG.C....G....C..C...C.............................................C.U...C.G..U....CGG.CC.U.C.U...CC............................G.G.C..G.G
   NC_007645.1       -..-..-C..G...A...A....G......A......C......G..A..U.U.U.G...G.A..A..G..A....A....GU..U.C...U.....G..-..-..-..--ucugc.............guaca..A..G..A...A.....G..U..U..G-.-..AC......C......AAUA..UCGUUUGGUGUCAGGAAGA.GCCCAUGAACCA.................................................GGG.CGC..UUGGUACUGC.A.......................................................GU.CA..G.C...AC..C..AUA..U...G..C....G..U............A.-....-...-...-......-......-.-...-..-...-...-..-....--...A.C.G........U...C...C...U..C........G......C.G.....A.A.G...A........C.G.C..A...C.....CC..--.-....-....-..-...-gaaacucuaucucgagua......cgcuggacguccaggcuc...-.-...-.C..G....CCG.CU.C.C.U...GC............................U.G.C..G.G
   NC_007712.1       G..C..UG..C...A...G....G......C......G......G..U..U.C.G.G...G.A..G..G..C....G....CU..G.G...C.....C..C..C..C..UA.........................U..G..C...G.....C..A..U..GU.U..GA......C......GAUU..UCGUCUGGUGCCAGGAAGA.GCCGCAGAAUCA.................................................GGG.CGC..CUGGUAUUGC.A.......................................................GC.CA..G.C...AC..C..AUU..U...C..C....G..C............G.A....A...G...U......G......A.U...A..U...C...C..G....CA...G.G.C........G...C...C...G..C........A......C.U.....G.A.A...U........U.A.U..G...C.....GG..GC.C....G....U..C...C.............................................G.G...C.U..U....CCG.CC.U.C.G...CC............................G.G.C..G.G
   NC_007908.1       A..C..AC..A...A...G....G......C......G......U..U..UgC.C.G...-.-..-..-..-....-....CU..G.A...A.....-..-..-..-..--cucaa............aagaua..U..C..C...G.....A..A..U..GU.G..AC......G......GAGG..UCGUAUGGUGUCAGGAUGA.GCCGCAAAACCA.................................................GGG.CGC..CUGGUUUUUU.G.......................................................UG.CA..G.C...AU..U..ACA..U...C..U....A..C............G.A....A...A...A......C......A.U...G..U...U...U..G....AC...G.G.G........C...A...A...A..A........A......C.G.....G.G.G...C........U.A.U..U...C.....GG..GC.C....G....C..G...C.............................................G.G...C.G..U....CCG.CA.U.C.G...CC............................C.G.C..C.G
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   NZ_LT615228.1     C..C..AC..A...A...A....G......C......G......C..U..G.A.C.U...G.C..A..G..A....G....UU..G.A...A.....G..A..A..A..UA.........................U..C..C...U.....A..A..G..UU.A..GA......A......GAGG..UUGUUUGGUGUCAGGAUGA.GCCACAGAACCA.................................................AGG.CGC..UUGGUUCUUU.G.......................................................UU.CA..G.C...AC..A..ACA..U...C..U....U..A............G.A....A...A...A......C......A.U...G..U...C...U..G....AC...G.G.A........-...A...U...G..-........A......A.G.....U.U.G...Gc......uU.A.U..G...C.....AG..GU.C....G....C..C...C.............................................U.G...C.A..U....CCG.CU.U.C.G...CC............................A.G.C..AuG
   NZ_LT615367.1     G..C..AU..C...A...G....G......C......U......G..U..G.C.A.G...G.C..U..G..C....A....CU..G.G...A.....G..C..C..U..UU.........................U..G..C...U.....C..A..C..GU.A..CA......U......GAUU..UUGUCUGGUGCCAGGAAGA.GCCGUUGAAUCA.................................................GGG.GGC..AUGGUACUGU.A.......................................................GC.CA..G.C...AC..C..AUU..U...C..C....G..U............G.A....G...G...U......C......A.U...U..C...C...A..U....UU...G.G.U........G...C...C...U..C........G......U.U.....G.C.G...G........U.A.U..G...C.....CG..GU.C....G....U..C...C.............................................G.G...C.C..U....CUG.CU.U.C.A...CC............................C.G.C..C.G
   NZ_LT853882.1     G..C..GU..-...-...-....-......-......-......G..C..G.C.A.G...-.-..U..U..G....G....CC..G.C...C.....G..A..-..-..--acucaa...........ggcuua..U..G..C...C.....A..A..U..GC.C..AC......C......GACG..UGGUGUGGUGUCAGGAAGA.GCCGCAGAAUCA.................................................GGG.CGC..GUGGUACCAG.A.......................................................UC.CG..C.C...AC..C..AUC..U...G..A....A..C............U.C....C...U...G......C......C.U...G..U...C...C..A....GC...G.G.U........C...A...G...A..G........C......C.U.....G.C.A...C........U.A.C..G...C.....CG..GC.C....G....-..-...-ugcccguuc.......................gcccucgccu...-.G...C.U..G....CCG.GC.C.A.U...A-............................-.-.-..-.-
   NZ_LT897836.1     G..-..AU..A..cA...U....G......C......U......G..U..U.C.G.G...G.A..G..G..U....A....UU..G.U...C.....U..C..C..U..UA.........................U..G..C...G.....C..A..C..GU.U..CG......G......GAUU..UAGUUUGGUGCCAGGAAGA.GCCGCAAAAUCA.................................................GGG.CUC..CUGGUAUUAC.C.......................................................AG.CA..A.U...AU..U..GCU..U...C..A....G..C............G.A....A...A...U......A......A.U...A..U...U...C..A....AA...G.G.G........G...C...U...G..U........A......U.U.....G.A.A...U........U.A.U..G...U.....CG..GU.C....G....U..C...C.............................................U.U...C.U..U....CUG.CC.U.C.A...CC............................A.G.C..A.G
   NZ_LT906435.1     G..C..AC..A...A...G....G......C......G......U..U..C.G.A.G...A.A..C..G..A....G....CU..G.A...A.....G..A..A..G..UA.........................C..G..A...A.....A..A..C..CU.C..GC......C......GAAG..UGGUGUGGGCCCAGGACGA.GCCGCAAAACCA.................................................GGG.UCC..GUGGUUCUAC.A.......................................................UC.GA..A.C...AC..C..ACC..U...G..C....U..C............G.A....A...G...C......C......A.U...G..A...G...C..G....CC...G.G.U........C...A...G...A..A........G......C.U.....G.G.C...C........U.A.C..G...C.....UG..GC.C....G....C..C...C.............................................G.G...C.U..U....CGG.CC.U.C.G...CC............................U.G.C..U.G
   NZ_LT906442.1     G..A..AG..A...A...A....G......C......A......C..U..U.A.U.C...G.C..A..G..A....A....CU..G.G...A.....U..A..A..A..UA.........................U..C..C...A.....C..A..A..GC.U..AA......A......GAAG..UGAUUUGGUGCCAAGAAGA.ACCACAGAACCA.................................................AGG.GGU..AUGGUUCUCU.U.......................................................CG.CA..G.C...AU..A..AUA..U...G..C....G..U............G.A....U...-...U......G......C.U...U..G...A...A..G....UC...U.G.A........U...C...A...G.aC........A......U.U.....A.A.A...C........U.A.U..G...C.....CG..GU.C....G....A..G...A.............................................G.U...U.U..G....CAG.CU.G.C.U...CC............................C.G.C..U.G
   NZ_LT906448.1     G..C..AC..G...A...G....G......A......A......A..U..G.A.A.A...G.U..A..A..U....C....UU..A.G...A.....G..C..C..U..UA.........................U..A..G...C.....C..A..U..GU.U..AC......C......GACU..AUGUAUGGUGUCAAGAAGA.ACCGUUAAAUCA.................................................AGG.AGC..GUGGUAUUGU.A.......................................................GU.CA..A.C...AU..A..ACU..U...U..G....U..G............A.C....A...U...C......A......A.U...U..C...C...A..G....AA...C.A.G........G...G...C...A..A........G......U.U.....A.C.G...C........U.A.U..G...U.....AG..GG.C....G....U..C...C.............................................A.G...C.A..U....CAG.CA.U.C.G...CC............................A.G.C..A.G
   NZ_LT906451.1     G..A..AA..A...A...G....G......C......A......C..U..U.A.U.C...C.A..A..G..A....A....CU..G.A...A.....U..A..A..A..UU.........................U..C..C...G.....C..A..U..GC.A..AA......A......GAAA..UCAUUUGGUGCCAAGAGGA.GCCUCAAAAUCA.................................................GGG.CGU..AUGGUUCUCU.U.......................................................CA.CA..A.C...AU..A..ACA..U...C..A....A..A............G.A....U...U...G......U......C.U..aA..A...C...A..G....UA...A.A.C........A...A...U...C..G........C......-.U.....A.A.G...C........U.A.U..G...C.....UG..GA.A....G....A..G...A.............................................A.U...U.U..G....CUG.CA.U.C.U...CC............................U.G.C..G.G
   NZ_LT906463.1     U..C..AU..G...A...U....G......A......U......G..U..A.A.A.A...G.C..G..G..U....G....UU..A.G...A.....G..C..C..U..UA.........................U..U..C...C.....C..A..U..GU.A..AC......U......GAUU..UUGUUUGGUGUCAAGAAGA.GCCACUUAACCA.................................................AGG.GGC..UUGGUAUUGU.A.......................................................GU.AA..A.C...AU..A..ACU..U...U..G....A..A............A.G....C...U...C......U......U.U...G..C...C...U..G....AU...G.G.U........G...U...G...A..A........A......U.U.....G.A.A...A........U.A.C..G...C.....CG..GC.C....G....U..C...C.............................................A.G...C.A..U....CAG.CC.U.C.U...CC............................A.G.C..C.G
   NZ_LT906479.1     G..C..AC..C...A...G....G......C......C......G..U..U.C.A.G...G.C..G..G..U....G....CU..G.G...A.....G..A..A..A..UA.........................C..G..C...G.....C..A..C..GU.G..CA......C......GAUU..UCGUCUGGUGUCAGGAAGA.GCCGCUGAACCA.................................................GGG.CGC..CUGGUACUGC.A.......................................................GC.CA..A.C...AC..A..ACU..U...C..C....G..U............G.A....A...G...U......C......G.U...G..C...C...G..U....UU...G.G.G........G...C...U...U..C........U......U.U.....A.C.G...U........U.A.C..G...C.....CG..GA.C....G....U..C...C.............................................G.G...C.C..U....CCG.CC.U.C.G...CC............................G.G.C..G.G
   NZ_LT907988.1     G..C..AC..A...A...G....A......C......U......U..U..C.G.A.A...G.C..C..G..A....A....CU..C.G...C.....C..A..A..G..UA.........................U..C..C...G.....A..A..G..GC.C..AC......C......GACG..UGGUCUGGGUGCAGGACGA.GCCGCAGAACCA.................................................GGG.CCC..GUGGUACUAC.G.......................................................UC.CA..G.C...AU..C..ACC..U...G..G....U..C............G.A....G...-...-......-......-.-...U..A...C...G..U....GA...A.C.A........A...C...G...G..C........Cag.aagC.U.....C.G.G...C........U.A.U..G...C.....CG..GC.C....G....C..C...A.............................................G.G...C.C..U....CGG.CG.U.C.G...CC............................C.G.C..C.G
   NZ_OU594967.1     U..U..AU..G...A...A....G......A......G......A..U..U.C.G.A...G.A..A..G..U....C....UU..A.G...A.....G..C..C..A..UU.........................U..C..A...A.....C..A..U..GU.A..AA......A......CAUU..UUGUCUGGUGUCAGGAAGA.ACCUCUGAAUCA.................................................GGG.GGC..UUGGUAUAGC.A.......................................................GC.CA..G.C...AC..C..ACU..U...C..U....U..G............G.C....G...G...C......U......A.U...U..C...C...U..A....AA...G.A.G........G...C...A...A..G........U......U.U.....-.-.A...U........C.A.U..A...Cg...cAG..GU.C....G....A..C...A.............................................G.G...C.U..U....CUG.CU.U.C.A...CC............................U.G.C..U.G
   NZ_OU907312.1     G..C..AG..C...C...A....G......U......G......A..U..A.C.A.U...C.A..G..C..U....G....GU..G.U...G.....U..C..A..G..UA.........................U..G..C...A.....C..A..C..GC.A..CA......G......CGUU..UCAUCUGGUGUCAAGAGGA.GCCGAUGAAU--caaggggccugggcauu.............uaugcaggcucauuugg..CAC.CGC..UGAUCGC-GC.A.......................................................GA.UC..G.U...--..-..---..-...C..C....C..A............C.A....A...C...A......G......A.U...C..-...-...-..-....UU...A.C.A........-...-...C...-..-........U......A.U.....G.U.G...G........G.G.C..G...C.....CC..--.-....-....-..-...-.............................................C.G...A.G..G....CUG.CA.G.C.A...CC............................A.G.C..G.G


   Structure         (..(..((..(.................................(..(..(.(.(.(...(.(..(..(..(.........((..(.(...(............................................)..)..)...................................................(((...........)))((((......................................................))).)((...((((..............................................................)).))..).)......................................................................................................).)..........)...)...)...)..)...............).).....).).)...)........).).)..)...).....((..((.(..............................................................).)...).)..)....(((.((.......................................).).)..).)


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sdhC-sdhD-sdhA-sdhB-sucA-sucB-sucC-sucD-sdhX



Position: 6307-6461, Conformation: #1







97% 90% 75% 50% Nucleotide present N N N Nucleotide identify E < 0.1 Base-pair covariation E < 0.05 Helix-level covariation 97% 90% 75%

R A G U R R Y Y Y Y A Y G Y R G A U G U U G G U G Y C A G G A A G A G C C A A Y C A R G G Y G C U G G U Y Y R Y C A R C A Y A Y U R Y R R Y Y Y R G Y G C C G C C C C G C G 5'