sdhC-sdhD-sdhA-sdhB-sucA-sucB-sucC-sucD-sdhX



Position: 5657-5771, Conformation: #1







DMS reactivity > 1.0 0.0 0.4 0.7 G/U/No data
Position: 0 (position.label in template: 0.5')5' Position: 1 (position.label in template: 1.C) Reactivity: nanC Position: 2 (position.label in template: 2.A) Reactivity: nanA Position: 3 (position.label in template: 3.C) Reactivity: nanC Position: 4 (position.label in template: 4.A) Reactivity: nanA Position: 5 (position.label in template: 5.A) Reactivity: nanA Position: 6 (position.label in template: 6.C) Reactivity: nanC Position: 7 (position.label in template: 7.C) Reactivity: nanC Position: 8 (position.label in template: 8.A) Reactivity: nanA Position: 9 (position.label in template: 9.G) Reactivity: nanG Position: 10 (position.label in template: 10.U) Reactivity: nanU Position: 11 (position.label in template: 11.C) Reactivity: nanC Position: 12 (position.label in template: 12.U) Reactivity: nanU Position: 13 (position.label in template: 13.A) Reactivity: nanA Position: 14 (position.label in template: 14.A) Reactivity: nanA Position: 15 (position.label in template: 15.C) Reactivity: nanC Position: 16 (position.label in template: 16.G) Reactivity: nanG Position: 17 (position.label in template: 17.G) Reactivity: nanG Position: 18 (position.label in template: 18.U) Reactivity: nanU Position: 19 (position.label in template: 19.U) Reactivity: nanU Position: 20 (position.label in template: 20.C) Reactivity: nanC Position: 21 (position.label in template: 21.C) Reactivity: nanC Position: 22 (position.label in template: 22.A) Reactivity: nanA Position: 23 (position.label in template: 23.C) Reactivity: nanC Position: 24 (position.label in template: 24.U) Reactivity: nanU Position: 25 (position.label in template: 25.U) Reactivity: nanU Position: 26 (position.label in template: 26.A) Reactivity: nanA Position: 27 (position.label in template: 27.C) Reactivity: nanC Position: 28 (position.label in template: 28.A) Reactivity: nanA Position: 29 (position.label in template: 29.C) Reactivity: nanC Position: 30 (position.label in template: 30.G) Reactivity: nanG Position: 31 (position.label in template: 31.C) Reactivity: nanC Position: 32 (position.label in template: 32.C) Reactivity: nanC Position: 33 (position.label in template: 33.G) Reactivity: nanG Position: 34 (position.label in template: 34.C) Reactivity: 1C Position: 35 (position.label in template: 35.U) Reactivity: nanU Position: 36 (position.label in template: 36.G) Reactivity: nanG Position: 37 (position.label in template: 37.C) Reactivity: 0.5C Position: 38 (position.label in template: 38.A) Reactivity: 0.5A Position: 39 (position.label in template: 39.A) Reactivity: 0A Position: 40 (position.label in template: 40.C) Reactivity: 1C Position: 41 (position.label in template: 41.A) Reactivity: 0.5A Position: 42 (position.label in template: 42.U) Reactivity: nanU Position: 43 (position.label in template: 43.A) Reactivity: 0A Position: 44 (position.label in template: 44.U) Reactivity: nanU Position: 45 (position.label in template: 45.C) Reactivity: 0C Position: 46 (position.label in template: 46.C) Reactivity: 0.5C Position: 47 (position.label in template: 47.A) Reactivity: 1A Position: 48 (position.label in template: 48.U) Reactivity: nanU Position: 49 (position.label in template: 49.A) Reactivity: 0A Position: 50 (position.label in template: 50.A) Reactivity: 0A Position: 51 (position.label in template: 51.C) Reactivity: 0.5C Position: 52 (position.label in template: 52.G) Reactivity: nanG Position: 53 (position.label in template: 53.G) Reactivity: nanG Position: 54 (position.label in template: 54.G) Reactivity: nanG Position: 55 (position.label in template: 55.C) Reactivity: 0C Position: 56 (position.label in template: 56.A) Reactivity: 0.5A Position: 57 (position.label in template: 57.G) Reactivity: nanG Position: 58 (position.label in template: 58.G) Reactivity: nanG Position: 59 (position.label in template: 59.G) Reactivity: nanG Position: 60 (position.label in template: 60.C) Reactivity: 0C Position: 61 (position.label in template: 61.G) Reactivity: nanG Position: 62 (position.label in template: 62.C) Reactivity: 0C Position: 63 (position.label in template: 63.G) Reactivity: nanG Position: 64 (position.label in template: 64.U) Reactivity: nanU Position: 65 (position.label in template: 65.U) Reactivity: nanU Position: 66 (position.label in template: 66.C) Reactivity: 0C Position: 67 (position.label in template: 67.C) Reactivity: 0C Position: 68 (position.label in template: 68.G) Reactivity: nanG Position: 69 (position.label in template: 69.U) Reactivity: nanU Position: 70 (position.label in template: 70.G) Reactivity: nanG Position: 71 (position.label in template: 71.U) Reactivity: nanU Position: 72 (position.label in template: 72.C) Reactivity: 0C Position: 73 (position.label in template: 73.U) Reactivity: nanU Position: 74 (position.label in template: 74.G) Reactivity: nanG Position: 75 (position.label in template: 75.G) Reactivity: nanG Position: 76 (position.label in template: 76.G) Reactivity: nanG Position: 77 (position.label in template: 77.A) Reactivity: 0.5A Position: 78 (position.label in template: 78.C) Reactivity: 0C Position: 79 (position.label in template: 79.U) Reactivity: nanU Position: 80 (position.label in template: 80.C) Reactivity: 0C Position: 81 (position.label in template: 81.C) Reactivity: 0C Position: 82 (position.label in template: 82.G) Reactivity: nanG Position: 83 (position.label in template: 83.U) Reactivity: nanU Position: 84 (position.label in template: 84.A) Reactivity: 0A Position: 85 (position.label in template: 85.C) Reactivity: 0C Position: 86 (position.label in template: 86.U) Reactivity: nanU Position: 87 (position.label in template: 87.G) Reactivity: nanG Position: 88 (position.label in template: 88.U) Reactivity: nanU Position: 89 (position.label in template: 89.C) Reactivity: 0C Position: 90 (position.label in template: 90.U) Reactivity: nanU Position: 91 (position.label in template: 91.G) Reactivity: nanG Position: 92 (position.label in template: 92.A) Reactivity: 0A Position: 93 (position.label in template: 93.A) Reactivity: 1A Position: 94 (position.label in template: 94.G) Reactivity: nanG Position: 95 (position.label in template: 95.A) Reactivity: 0.5A Position: 96 (position.label in template: 96.A) Reactivity: 0A Position: 97 (position.label in template: 97.G) Reactivity: nanG Position: 98 (position.label in template: 98.C) Reactivity: 0C Position: 99 (position.label in template: 99.A) Reactivity: 0A Position: 100 (position.label in template: 100.G) Reactivity: nanG Position: 101 (position.label in template: 101.U) Reactivity: nanU Position: 102 (position.label in template: 102.G) Reactivity: nanG Position: 103 (position.label in template: 103.C) Reactivity: 0C Position: 104 (position.label in template: 104.U) Reactivity: nanU Position: 105 (position.label in template: 105.G) Reactivity: nanG Position: 106 (position.label in template: 106.G) Reactivity: nanG Position: 107 (position.label in template: 107.C) Reactivity: 0.5C Position: 108 (position.label in template: 108.G) Reactivity: nanG Position: 109 (position.label in template: 109.U) Reactivity: nanU Position: 110 (position.label in template: 110.U) Reactivity: nanU Position: 111 (position.label in template: 111.U) Reactivity: nanU Position: 112 (position.label in template: 112.G) Reactivity: nanG Position: 113 (position.label in template: 113.A) Reactivity: 1A Position: 114 (position.label in template: 114.A) Reactivity: 0.5A Position: 115 (position.label in template: 115.U) Reactivity: nanU Position: 116 (position.label in template: 116.A) Reactivity: 1A Position: 117 (position.label in template: 117.U) Reactivity: nanU Position: 118 (position.label in template: 118.G) Reactivity: nanG Position: 119 (position.label in template: 119.G) Reactivity: nanG Position: 120 (position.label in template: 120.U) Reactivity: nanU Position: 121 (position.label in template: 121.U) Reactivity: nanU Position: 122 (position.label in template: 122.A) Reactivity: 0.5A Position: 123 (position.label in template: 123.U) Reactivity: nanU Position: 124 (position.label in template: 124.G) Reactivity: nanG Position: 125 (position.label in template: 125.C) Reactivity: nanC Position: 126 (position.label in template: 126.C) Reactivity: nanC Position: 127 (position.label in template: 127.A) Reactivity: nanA Position: 128 (position.label in template: 128.C) Reactivity: nanC Position: 129 (position.label in template: 129.C) Reactivity: nanC Position: 130 (position.label in template: 130.G) Reactivity: nanG Position: 131 (position.label in template: 131.C) Reactivity: nanC Position: 132 (position.label in template: 132.A) Reactivity: nanA Position: 133 (position.label in template: 133.G) Reactivity: nanG Position: 134 (position.label in template: 134.A) Reactivity: nanA Position: 135 (position.label in template: 135.A) Reactivity: nanA Position: 136 (position.label in template: 136.C) Reactivity: nanC Position: 137 (position.label in template: 137.C) Reactivity: nanC Position: 138 (position.label in template: 138.A) Reactivity: nanA Position: 139 (position.label in template: 139.C) Reactivity: nanC Position: 140 (position.label in template: 140.G) Reactivity: nanG Position: 141 (position.label in template: 141.C) Reactivity: nanC Position: 142 (position.label in template: 142.A) Reactivity: nanA Position: 143 (position.label in template: 143.C) Reactivity: nanC Position: 144 (position.label in template: 144.U) Reactivity: nanU Position: 145 (position.label in template: 145.C) Reactivity: nanC Position: 146 (position.label in template: 146.U) Reactivity: nanU Position: 147 (position.label in template: 147.G) Reactivity: nanG Position: 148 (position.label in template: 148.A) Reactivity: nanA Position: 149 (position.label in template: 149.C) Reactivity: nanC Position: 150 (position.label in template: 150.C) Reactivity: nanC Position: 151 (position.label in template: 151.A) Reactivity: nanA Position: 152 (position.label in template: 152.U) Reactivity: nanU Position: 153 (position.label in template: 153.C) Reactivity: nanC Position: 154 (position.label in template: 154.U) Reactivity: nanU Position: 155 (position.label in template: 155.G) Reactivity: nanG Position: 156 (position.label in template: 156.3')3' 10 20 30 50 100 150


sdhC-sdhD-sdhA-sdhB-sucA-sucB-sucC-sucD-sdhX



Position: 5657-5771, Conformation: #1







Retained alignments:


   NC_002977.6       UG.A....C.CA..G...C....G..G.A..CU...G.G....A..G..AG.........G.....U.....U..U...GC.G..CC......C..CG....C..U.CC...A..G...C.....A..C.-..CUC...A...G..G..G.C.......................................................................GGGcC..A..GG..G.C..A..G.G.....U.U.C......G..A...C.A.U..C..UA.CGA.UU..CG.C.U.....G.CUGUC...CGAGGAGGG.C.G.UG.C.UGGGAUUCGAAUACGGUUAC..............AG..C.AGC.U.....CG.G.A.A..C..C.C..GAC..A..C..G..CU
   NC_003910.7       UA.A....U.CA..A...G....A..A.G..AC...G.G....U..A..GU.........A.....C.....C..U...AU.U..UA......C..CA....C..U.GC...A..A...A.....A..U.A..UCA...G...A..G..A.A.......................................................................GGC.C..A..AG..G.C..CcaU.U.....U.G.A......U..G...U.A.C..A..UG.A--.UU..CA.G.U.....G.UUAUC...UGAAGUCUC.A.G.UA.U.UAGCCUUUGAAUAUGGCUAU..............AC..C.ACU.G.....CU.G.A.G.cC..U.G..CAG..G..U..U..U-
   NC_004603.1       UC.A....-.CA..A...C....C..A.A..UC...A.G....A..U..GC.........A.....A.....G..C...AC.U..UA......C..AUc..cC..G.CU...A..G...Cg...aA..U.A..UCC...A...U..G..A.C.......................................................................AAG.C..A..GG..G.G..C..C.U.....U.U.C......C..A...A.G.U..U..UU.UGA.CU..CU.G.U.....G.UUGUC...GGAAGAAGC.U.G.UU.C.UUGCAUUUGAGUACGGUUAU..............GC..A.ACA.G.....CU.G.A.A..C..C.U..GGC..G..G..U..UU
   NC_005126.1       UA.A....U.CA..G...G....C..U.A..AC...G.G....U..U..CU.........G.....U.....U..U...AU.G..UU......C..CU....C..U.GG...C..G...A.....A..C.G..UUC...A...U..A..A.C.......................................................................GGU.C..A..GG..G.A..G..C.A.....U.U.U......A..A...U.G.U..U..UG.GGA.UU..CU.G.U.....U.CUGUC...GGAAGAGGC.G.G.UA.C.UGGCGUUUGAGUAUGGCUAU..............GC..A.ACA.A.....CA.G.A.A..C..C.U..CGC..G..C..U..CU
   NC_005966.1       CA.A....U.CA..A...G....U..A.G..AU...G.G....U..U..CG.........A.....C.....C..U...AU.A..UU......C..CA....C..U.GU...G..U...C.....A..U.G..---...-...-..-..-.-ugaaggaa......................................................aaccagcc.---.-..-..--..A.C..G..U.-.....U.U.U......G..C...U.U.U..A..UA.UGA.UU..CA.U.U.....A.UUAUC...GGAAGAAGC.G.G.UA.C.UUGCAUUUGAAUAUGGUUAU..............GC..A.ACC.A.....CG.A.U.U..C..C.A..AAU..A..G..C..UU
   NC_006512.1       UA.A....C.CA..A...A....A..A.G..AU...G.G....U..U..CU.........A.....C.....C..U...AU.A..UG......C..--....-..-.--...-..-...-.....-..-.-..---...-...-..-..-.-cacugaacaacu..............................................uagguucagagc.---.-..A..GG..G.G..C..A.A.....A.U.U......G..A...A.A.U..U..UA.CGA.CU..CG.G.U.....U.UUAUC...AGAAGCCGC.G.G.UU.G.UGGCCUUCGAAUACGGUUAC..............GC..U.ACG.G.....CU.G.A.A..C..C.G..CAG..U..C..U..UU
   NC_006513.1       CC.A....G.AA..G...C....G..C.G..AG...C.G....C..U..GGgaccagggcA.....C.....C..U...AC.G..UG......C..CG....C..U.GA...A..G...C.....A..U.A..UCC...A...G..G..A.C.......................................................................GGC.C..A..GG..C.C..G..C.G.....C.U.G......C..A...G.A.U..C..UU.CGA.UU..CG.G.U.....G.CUGUC...GGAAGAGGC.G.G.UC.C.UCGCGUUCGAGUACGGCUAC..............GC..G.ACC.G....cCG.A.G.C..C..G.A..ACG..A..G..C..UU
   NC_007481.1       UA.G....U.CA..A...G....C..C.G..AU...G.G....U..G..CG.........A.....C.....U..U...AC.A..CU......C..CA....C..U.UG...A..G...C.....A..U.G..UUG...G...U..A..A.A.......................................................................GAU.C..A..AG..G.U..A..C.U.....U.U.C......C..A...A.G.U..A..UU.CGA.UU..CA.G.U.....U.CUUUC...UGAAGAAGC.G.G.UU.G.UUGCUUUUGAAUAUGGUUAC..............GC..A.ACG.G.....CA.G.A.G..C..C.A..ACG..U..C..A..UU
   NC_007510.1       CC.G....C.GA..G...Cg.cuG..G.A..AC...G.A....C..G..GC.........A.....C.....G..U...AC.G..UG......C..CG....C..U.GC...A..G...A.....A..C.A..UCG...C...A..G..A.-.......................................................................AGG.C..C..AG..G.C..G..A.A.....G.U.U......C..A...C.G.G..U..GA.UCG.AC..UCgG.U.....G.CUGUC...GGAAGAAGC.G.G.UG.C.UGGGCUUCGAAUACGGUUAC..............UC..G.ACC.G.....CC.G.A.G..C..C.G..AAC..A..C..G..CU
   NC_007645.1       CA.-....G.AA..G...G....A..C.G..GU...G.G....U..U..UG.........-.....-.....-..C...AU.A..UU......C..CG....U..U.GC...A..A...C.....A..U.U..---...-...-..-..-.-uggcg...........................................................gaaggu.---.C..A..GC..C.U..G..U.G.....U.U.C......G..A...U.A.U..U..UA.CGA.CU..CC.U.A.....C.CUCUC...UGAAGAGGC.G.G.UG.U.UGGCGUUCGAAUACGGUUAC..............GC..G.ACC.A.....CG.A.A.C..C..C.G..AAA..A..C..G..CU
   NC_007712.1       UA.A....C.CA..G...A....A..G.A..AU...G.G....C..U..CC.........A.....G.....C..U...AC.A..CU......C..CG....U..U.GG...C..C...A.....A..U.G..UCC...A...C..A..A.C.......................................................................GGU.C..A..GG..G.C..A..G.C.....U.U.C......C..G...U.G.U..U..UG.GGA.CU..CG.G.U.....G.UUGUC...GGAGGAGGC.G.G.UG.C.UGGCGUUUGAAUACGGUUAC..............GC..C.ACC.G.....CC.G.A.G..C..C.G..CGC..A..C..U..UU
   NC_007954.1       UA.A....U.CA..A...A....A..U.G..AU...G.G....C..A..GU.........A.....C.....C..U...AU.A..UG......C..CA....C..U.GC...G..C...A.....A..U.A..UUG...C...C..G..A.U.......................................................................GAA.C..A..AG..G.C..C..C.G.....A.U.U......G..A...U.A.U..C..AC.AGA.CU..CU.G.U.....G.UUAUC...AGAAGCCUC.A.G.UG.C.UGGCGUUCGAAUACGGUUAU..............GC..C.ACC.G.....CA.G.A.G..C..C.G..GGU..G..G..U..UU
   NC_007963.1       CA.A....C.CA..G...A....A..G.G..AC...G.G....C..U..CG.........A.....C.....C..U...AU.G..UG......C..CG....C..U.GG...A..G...U.....A..C.A..UCA...A...G..G..A.A.......................................................................-GG.C..C..AG..C.C..G..A.A.....U.U.U......C..A..cC.A.U..C..CG.CGA.CU..CC.U.U.....C.CUGUC...CGAAGAAGC.C.G.CC.C.UGGCGUUCGAGUACGGCUAC..............UC..C.ACG.A.....CC.A.C.G..C..C.C..AAU..G..C..C..UU
   NC_008700.1       CA.A....C.CA..G...A....A..C.G..AU...G.C....C..A..CC.........A.....C.....C..U...AU.A..UG......C..CG....C..U.GC...G..U...A.....A..C.C..UUG...C...G..C..A.G.......................................................................GAG.C..A..GG..G.U..C..C.G.....G.U.U......G..A...C.A.U..U..AC.UGA.CU..CU.G.U.....G.CUGUC...AGAAGCCUC.U.G.UA.C.UGGCAUUCGAAUACGGUUAU..............GC..C.ACU.G.....CC.G.A.G..C..C.A..GGC..G..G..C..CU
   NC_008786.1       CG.-....C.GA..G...A....-..-.A..AU...G.Gg.acA..U..CGg.......cA.....C.....C..U...AC.A..CG......C..CG....U..U.GC...A..G...A.....A..C.G..---...-...-..-..-.-uggccg.........................................................agaacca.---.-..-..-G..G.C..G..C.C.....G.U.U......C..G...UcG.U..C..AU.CGA.CU..CC.A.U.....C.CUCUC...CGAAGAGGC.G.G.UG.CuGGGCUUUG-AAUACGGCUAC..............GC..C.UCG.A.....AC.G.A.C..C..C.C..AAU..A..C..C..CU
   NC_008789.1       CG.C....C.CG..G...G....A..U.G..--...-.G....C..U..CG.........A.....A.....C..U...UC.-..--......-..--....-..-.--...-..-...-.....-..-.-..---...-...-..-..-.-guaccgcugcaggacgucacc............................accgaaccccaggauuucgug.---.-..-..--..-.-..-..-.-.....-.-.-......-..-...-.G.U..C..AU.CGA.UU..CG.C.U.....C.CUCUC...CGAGGAGGC.C.G.UG.CuCGG-UUUCGAGUACGGCUAC..............GC..C.ACC.A.....CG.G.A.A..C..C.G..GAU..A..C..C..CU
   NC_008825.1       GA.A....G.UG..G...G....A..C.G..AA...G.G....U..-..--.........A.....C.....U..U...GG.A..CG......C..CG....C..U.GC...A..G...C.....A..C.GugGCC...-...-..G..A.C.......................................................................GGC.C..-..AG..G.C..G..C.C.....G.U.U......C..G...U.C.G..U..GAuCGA.CU..CC.A.U.....C.CUGUC...GGAAGAGGC.G.G.UG.CuCGGC-UUCGAGUACGGCUAC..............GC..C.UCG.G.....CC.G.A.C..C..C.G..ACC..A..C..G..CU
   NC_009092.1       CA.A....C.CA..A...A....A..U.G..AU...G.C....G..A..CA.........G.....C.....U..U...AU.C..UG......C..CG....C..U.GC...G..U...C.....A..C.C..UGU...C...U..G..A.C.......................................................................AUG.C..A..AG..G.C..C..C.U.....A.U.C......G..A...U.A.U..C..UC.UGA.CU..CG.G.U.....A.UUGUC...UGAAGCCUC.A.G.UA.U.UGGCGUUCGAAUAUGGUUAU..............GC..C.ACG.G.....CU.G.A.G..C..C.G..GGC..G..G..C..CU
   NC_009379.1       UC.G....U.GA..G...A....A..G.U..GG...G.Au.acC..G..GU.........A.....C.....U..U...AC.A..UA......G..CA....C..U.GC...A..A...C.....A..U.G..UCA...C...U..A..A.A.......................................................................-GA.U..C..AA..G.C..A..C.C.....A.U.U......U..G...U.G.G..U..GAuUGA.CU..CA.A.U.....C.CUCUC...GGAAGAGGC.U.G.UU.C.UGGGUUUUGAAUACGGCUAU..............GC..C.GCU.G.....CA.G.A.A..C..C.G..AAU..A..C..C..CU
   NC_009446.1       UG.A....U.CA..A...A....A..A.A..AU...G.A....A..A..CG.........A.....C.....U..U...AU.U..GC......G..CG....U..U.GC...A..A...C.....A..U.A..UUG...CgccC..A..A.U.......................................................................CAA.C..G..CC..G.C..G..C.G.....C.A.A......-..-...-.A.U..C..AU.CG-.AU..UC.A.U.....UaUUAUC...CGAAGCGGC.A.A.CU.U.UGGGCUUUGAAUACGGUUAU..............GC..C.UGC.G.....CC.G.A.A..C..C.G..CGA..G..G..A..UU
   NC_009792.1       UA.A....C.CA..G...G....C..A.A..AU...G.G....C..U..CC.........A.....C.....G..U...AU.A..CG......C..CG....U..U.GC...A..G...C.....A..C.A..UUC...A...U..A..A.C.......................................................................GGU.C..A..GG..G.C..A..C.C.....U.U.C......C..G...C.G.U..C..UG.GGA.CU..CC.G.U.....C.CUGUC...UGAAGAAGC.G.G.UG.C.UGGCGUUCGAAUACGGUUAU..............GC..G.ACC.G.....CU.G.A.A..C..C.G..CGC..A..C..C..CU
   NC_009901.1       CAaA....A.UG..A...U....G..C.A..AC...G.G....C..U..--.........-.....-.....-..U...AU.A..UG......C..CG....C..U.GC...G..U...A.....A..U.A..UUG...C...A..G..A.U.......................................................................GAG.C..A..AG..G.A..C..C.A.....A.U.A......G..A...U.A.U..U..AC.CGA.CU..CG.G.U.....A.UUAUC...UGAAGCGUC.G.G.UA.C.UGGCAUUUGAAUAUGGCUAU..............GC..G.ACU.G.....CU.G.A.A..C..C.A..GGC..G..G..C..UU
   NC_010170.1       CG.A....A.CG..C...U....G..G.A..AC...G.A....C..G..G-........uA.....C.....C..U...AC.G..UG......C..CG....C..U.GC...A..G...A.....A..C.G..UGU...C...C..G..A.C.......................................................................G-G.C..C..AG..G.C..G.cC.G.....U.U.C......A..C...C.G.U..C..AU.CGA.CU..CG.G.U.....G.CUGUC...CGAAGAAGC.G.G.UG.CuUGGC-UUCGAAUACGGCUAU..............UC..C.AGC.G.....CC.G.A.G..C..C.C..AAC..A..C..G..CU
   NC_010554.1       CA.A....U.CA..A...A....C..C.A..AU...G.G....U..U..CA.........G.....U.....U..U...AU.G..UAc....cA..UU....A..G.CC...A..A...U.....A..U.U..--C...A...U..A..A.C.......................................................................GCC.C..A..AG..G.U..C..A.A.....U.U.U......A..A...U.G.U..U..UG.GGA.UU..CU.G.U.....C.UUAAC...AGAAGAAGC.G.G.UA.U.UAGCAUUUGAAUAUGGUUAU..............GC..U.ACU.A.....CU.G.A.G..C..C.U..CGC..G..G..G..CU
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   NZ_CP110257.1     GA.A....G.UG..G...G....A..C.G..AG...G.G....C..-..--.........A.....C.....C..U...AC.A..UC......C..CG....C..U.GC...A..G...A.....A..C.G..-UC...G...-..-..-.-ccga..............................................................gaac.---.C..A..GG..C.C..C..C.G.....U.U.C......G..U...C.G.U..C..AU.CGA.CU..CC.A.U.....C.CUGUC...UGAGGAGGC.G.G.UG.C.UCGGUUUCGAGUACGGCUAC..............GC..C.UCG.G.....CG.G.A.C..C..C.G..AAC..A..C..G..CU
   NZ_FO704550.1     CC.A....A.AA..-...-....-..C.A..AU...G.C....C..U..CU.........G.....U.....G..U...AU.G..UG......C..CC....U..U.GG...C..G...A.....A..U.A..UCC...A...C..A..A.U.......................................................................GGU.C..A..AG..G.G..G..U.A.....U.U.C......A..A...C.G.U..A..UG.GGA.UU..CG.G.U.....A.CUUUC...AGAAGAAGC.G.G.UA.C.UGGCCUUUGAAUACGGUUAU..............GC..A.ACU.A.....CU.G.A.A..C..C.U..CGU..G..C..C..CU
   NZ_FO704551.1     UA.A....C.CA..G...A....C..U.A..AU...G.C....A..U..CU.........G.....U.....C..U...AU.G..UU......C..CU....U..U.GG...C..C...A.....A..U.A..UUC...A...C..A..A.U.......................................................................GCU.C..A..AG..G.C..G..U.A.....U.U.U......A..A...C.G.U..A..UG.GGA.CU..CG.G.U.....A.CUGUC...UGAAGAAGC.U.G.UA.C.UGGCAUUUGAAUACGGUUAU..............GC..A.ACC.A.....CU.G.A.A..C..C.G..CGU..G..C..C..CU
   NZ_HG322949.1     AC.G....C.UG..G...G....A..U.G..CC...G.G....U..U..CG.........-.....-.....-..U...AC.G..UG......C..CG....C..U.GG...A..A...A.....A..C.G.uGUC...G...G..A..A.-.......................................................................GGC.C..A..GG..-.C..G..C.C.....U.U.U......C..A..cC.G.U..G..AU.CGA.CU..CG.G.U.....G.CUGUC...GGAAGAAGC.G.G.UA.C.UGGCCUUCGAAUACGGUUAU..............UC..G.ACC.G.....CC.G.A.G..C..C.A..AAC..A..C..G..CU
   NZ_HG916765.1     CG.A....G.CG..C...U....G..G.G..AC...G.A....C..G..GC.........A.....C.....C..U...AC.G..UG......C..CG....C..U.GC...A..G...A.....A..C.G..U-C...U...C..C..G.A.......................................................................GAA.C..C..AG..G.C..G..C.C.....G.U.U......C..A...C.G.G..U..GAuCGA.CU..CC.G.U.....G.CUGUC...CGAAGCCGC.G.G.UG.C.UGGGCUUUGAAUACGGCUAC..............GC..C.ACC.G.....CC.G.A.G..C..C.C..AAC..G..U..G..CU
   NZ_HG916826.1     CA.A....C.CA..G...A....A..G.G..AU...G.G....C..U..CG.........A.....C.....C..U...AC.G..UU......C..CG....C..U.GA...-..-...-.....A..G.A..ACCuguA...C..G..A.C.......................................................................GGU.C..A..GC..C.G..A..A.G.....U.U.C......G..A...G.C.U..G..UA.CGA.CU..CC.U.U.....C.CUCUC...CGAGGAAGC.G.G.UA.C.UGGCGUUCGAGUACGGUUAU..............GC..C.ACC.A.....CU.A.C.G..C..C.G..AAC..G..C..G..CU
   NZ_LN832559.1     CG.A....C.CA..G...G....C..C.AcgGA...A.G....A..G..CG.........-.....-.....U..U...AC.U..AU......C..CG....C..U.GA...A..C...C.....A..C.A..UCC...G...C..G..G.C.......................................................................GGA.C..A..GG..-.C..A..C.G.....C.U.A.....uG..A...G.G.U..C..AC.CGA.CU..CG.A.U.....G.CUGUC...GGAAUAUGC.G.G.UG.C.UGGGCUUCGAAUACGGCUAU...........u.cGC..U.G--.G.....CC.G.A.G..C..C.G..AAC..A..C..G..CU
   NZ_LR134167.1     --.-....-.--..-...-....-..-.-..--...-.A....U..G..CC.........A.....C.....A..A...-U.U..U-......-..AU....A..C.CC...C..A...C.....U..U.A..C--...-...-..-..-.-ccauuug.......................................................cacaauca.--G.C..A..AG..G.G..C..A.U.....U.U.U......G..A...A.G.U..G..UG.GGA.UU..CC.G.U.....G.CUUUC...AGAAGAAGC.G.G.UG.C.UGGCUUAUGAAUAUGGCUAU..............GC..C.ACA.G.....CG.A.C.A..C..C.A..AAA..A..C..G..CU
   NZ_LR134201.1     UA.A....C.CA..G...A....C..C.A..AC...G.G....U..U..CG.........A.....C.....C..U...AU.A..CG......C..CG....C..U.GG...C..G...C.....A..C.G..UUC...A...C..A..A.C.......................................................................AGC.C..A..GG..G.C..A..U.U.....U.U.C......A..A...G.G.U..C..UG.GGA.UU..CG.G.U.....A.CUGUC...UGAGGAAGC.G.G.UU.C.UGGCCUUUGAAUAUGGUUAU..............GC..U.ACG.G.....CA.G.A.A..C..C.A..CGC..A..C..C..CU
   NZ_LR134302.1     CG.A....A.CG..C...U....G..G.A..AC...G.A....C..G..GC.........A.....C.....C..U...AC.A..UU......C..CG....C..U.GC...AgaA...C.....G..U.G..UCG...-...-..G..A.-.......................................................................CGG.C..C..AG..G.C..G.cC.G.....U.U.C......A..C...C.G.U..C..AU.CGA.CU..CC.G.U.....G.CUGUC...CGAAGAGGC.G.G.UG.C.UGGGCUUUGAAUACGGCUAC..............UC..C.AGC.G.....CU.G.A.A..C..C.G..AAC..A..C..G..CU
   NZ_LR134326.1     CG.A....G.C-..G...C....U..G.G..AA...C.G....A..-..CG.........G.....C.....UucU...AC.G..UG......C..CG....C..U.GC...A..G...A.....A..C.G..UCU...C...G..G..A.-.......................................................................AGG.C..C..AG..G.C..G.cC.G.....U.U.C......A..C...C.G.U..G..AU.CGA.CU..CG.G.U.....G.CUGUC...CGAAGAGGC.G.G.UG.C.UGGCAUUCGAAUACGGCUAC...........u.cGU..C.GGC.-.....CG.A.A.C..C..C.A..-AC..A..C..G..CU
   NZ_LR134327.1     UA.A....C.CA..A...A....A..A.G..AC...G.G....U..A..CC.........G.....G.....C..U...AU.G..U-......-..GC....C..A.UU...A..A...C.....C..C.A..AUU...G...C..-..-.-ac.................................................................gcc.AAU.C..A..AG..G.U..C..G.C.....U.U.U......G..A...A.G.U..A..UG.GGA.UU..CC.G.U.....A.UUGAC...GGAAGAAGG.C.G.UG.U.UGGCUUUUGAAUAUGGUUAU..............GC..C.ACA.A.....CG.G.A.U..C..C.G..AAA..A..C..C..CU
   NZ_LR134343.1     UG.A....C.CG..A...U....G..G.C..AG...U.A....U..G..UA.........C.....A.....U..U...--.-..--......C..CG....U..U.GC...A..G...C.....A..U.A..UUU...-...C..A..C.C.......................................................................AAA.C..C..AA..G.C..U..C.G.....C.U.U.....uG..C...U.A.C..C..UA.UAA.CU..CA.C.U.....G.UUGUC...CGAAGAGGC.G.G.UA.U.UAGCAUUUGAAUAUGGUUAU..............GC..G.ACC.A.....CA.G.U.G..C..C.A..AAU..G..C..C..UU
   NZ_LR134365.1     CG.A....C.CA..G...A....A..A.A..CC...G.G....C..G..AC.........A.....G.....C..U...AC.A..CC......G..CG....C..U.CG...C..C...C.....A..C.C..UCU...A...U..G..A.C.......................................................................GGC.C..A..GC..C.G..U..C.G.....G.C.G......C..G...U.A.U..C..AU.CGA.CU..CC.A.U.....C.CUCUC...CGAAGCGGCgG.U.AC.U.CGGC-UUUGAAUACGGCUAC..............UC..C.ACC.G.....CC.G.A.G..C..C.G..CUG..G..G..G..CU
   NZ_LR134376.1     CA.A....C.CA..G...A....-..-.-..AC...G.A....U..G..CCa......gcA.....C.....C..U...AU.A..CC......C..CG....C..U.GU...G..C...A.....A..C.A..UUC...A...C..G..A.C.......................................................................GAG.C..A..GG..G.C..C..C.G.....U.U.C......G..A...A.G.U..C..UA.UGA.CU..CC.G.U.....G.CUGUC...CGAAGAGGC.G.G.UG.C.UGGCGUUCGAAUACGGUUAU..............GC..C.AGC.G.....CC.G.A.G..C..C.G..GCC..G..G..C..CU
   NZ_LR134378.1     CG.A....G.AA..G...C....A..U.G..AC...C.A....G..G..GC.........A.....C.....C..U...AC.A..UC......C..CG....C..U.GC...A..G...C.....A..C.G..UC-...A...C..C..G.A.......................................................................GGA.U..C..AG..G.C..C..CaG.....U.U.C......A..U...C.G.U..C..AU.CGA.CU..CG.G.U.....G.CUCUC...CGAAGAGGC.C.G.UG.C.UGGCCUUCGAAUAUGGCUAC..............GC..C.AGC.G.....CC.G.A.G..C..C.C..AAC..A..G..C..CU
   NZ_LR134485.1     UA.A....C.CA..G...G....C..G.A..AC...G.G....U..U..CA.........A.....C.....C..U...AC.A..CG......C..CG....C..U.GC...A..G...C.....A..U.G..UGC...A...U..A..A.C.......................................................................GGU.C..A..GG..G.C..A..C.G.....U.U.C......C..G...C.G.U..A..UG.GGA.CU..CC.G.U.....G.CUGUC...UGAAGAAGC.G.G.UA.C.UGGCGUUCGAGUAUGGUUAU..............GC..C.ACG.G.....CA.G.A.A..C..C.A..CGC..A..C..G..CU
   NZ_LR134494.1     CA.A....C.CA..G...A....A..A.A..AC...G.G....U..U..CG.........G.....U.....C..U...AC.G..UG......C..CA....C..U.GG...C..C...A.....A..U.G..UCC...A...C..A..G.C.......................................................................GGG.C..A..GG..G.C..G..A.G.....U.U.C......A..A...A.G.U..U..UG.GGA.CU..CC.G.U.....A.CUGUC...UGAAGAAGC.C.G.UU.C.UGGCGUUCGAAUAUGGCUAU..............GC..C.ACC.G.....CA.G.A.A..C..C.U..CGC..A..C..C..CU
   NZ_LR134515.1     --.-....-.--..-...-....-..U.G..AC...G.G....U..A..CG.........G.....G.....C..U...AU.G..UU......C..CG....C..U.U-...-..-...-.....-..-.-..---...-...-..-..-.-gcgcauuuaca................................................cgccaaucaag.---.-..-..--..-.G..A..C.G.....U.UuU......G..A...A.G.U..A..UG.GGA.CU..CG.G.U.....A.CUUUC...CGAAGAGGC.G.G.UC.U.UAGCGUUUGAAUACGGCUAU..............GC..G.ACA.A.....CC.G.A.U..C..C.G..AAA..A..C..A..UU
   NZ_LR134531.1     UA.A....C.CA..A...A....A..A.G..AU...G.G....C..U..CA.........U.....A.....U..U...AU.G..UU......C..CU....C..U.GG...C..C...A.....A..U.A..UUC...A...U..A..A.U.......................................................................GGU.C..A..GA..G.U..G..A.A.....U.U.C......C..A...G.G.U..C..UG.GGA.CU..CA.G.U.....A.UUGAG...UGAAGCCGG.U.G.UG.U.UGGCCUUUGAGUAUGGUUAU..............GC..A.ACA.G.....CA.G.A.A..C..C.A..CGU..A..C..U..UU
   NZ_LR215729.2     CA.A....C.CA..G...A....A..A.G..AC...G.G....C..U..CG.........A.....C.....C..U...AU.G..UA......C..CG....C..U.GC...A..G...C.....G..U.C..---...-...-..-..-.-uguaugaug....................................................aucaaccga.---.-..-..--..-.-..-..A.G.....U.U.U......G..A...U.C.U..C..UA.CGA.CU..CA.U.U.....C.CUGUC...GGAAGAAGC.U.G.UA.C.UGGCAUUUGAAUACGGUUAC..............UC..C.AC-.-.....C-.-.-.A..C..C.A..CGC..-..-..-..CU
   NZ_LR217713.1     CA.A....U.CA..A...U....C..A.A..AU...G.G....A..U..CC.........A.....U.....A..U...AC.U..GU......C..CU....U..U.AA...A..A...C.....A..U.A..UCA...A...U..G..A.A.......................................................................AAU.C..A..AG..G.U..A..A.U.....U.U.U......G..A...U.A.U..A..UG.GGA.CU..CA.A.U.....U.CUUUC...AGAAGAAGC.C.G.UA.U.UAGCAUUUGAAUAUGGUUAC..............UC..U.AUA.A.....CA.G.U.U..C..C.G..GAC..A..A..C..UU
   NZ_LR699007.1     UA.A....C.CA..G...A....G..C.A..AC...G.G....C..U..CC.........U.....G.....C..U...AU.G..UG......C..CG....C..U.GA...U..G...A.....A..U.G..UCC...A...U..A..A.C.......................................................................GCC.C..A..GG..-.G..A..C.G.....C.U.U......C.aA...U.G.U..A..UG.GGA.CU..CC.G.U.....C.CUGUC...UGAGGAAGC.G.G.UA.C.UGGCCUUUGAAUACGGCUAU..............GC..A.ACC.A.....CU.G.A.C..C..C.G..CGC..G..G..C..CU
   NZ_LR990739.1     UG.A....C.CA..G...A....A..G.A..GC...G.A....C..A..GC.........U.....A.....U..U...AC.A..UG......C..CG....C..U.GC...G..C...C.....A..G.U..---...-...-..-..-.-uggugga........................................................aaauccc.---.G..A..AG..A.C..G..C.-.....C.A.C......C..G...U.G.A..U..CG.ACU.CG..CU.G.C.....U.CAG--...CGAAGAAGC.G.G.UG.A.UGGGUUUCGAAUACGGCUAC..............UC..C.ACU.A.....CC.G.A.C..C..C.G..AAC..G..C..A..CU
   NZ_LS483369.1     CG.-....-.CG..A...A....-..A.A..AU...G.G....G..A..CG.........A.....CgguacU..U...AU.G..UU......C..CU....C..U.GC...G..C...C.....A..U.A..---...-...-..-..-.-ugggc...........................................................gaaggc.---.A..U..GG..G.C..G..A.G.....U.U.C......C..U...G.G.U..U..AU.CGA.CU..CC.A.U.....U.UUGAA...CGAAGAGGC.C.G.UG.A.UGGCGUUCGAGUACGGCUUU..............GC..C.UGC.U.....CC.G.C.A..C..C.U..GAC..A..A..A..CU
   NZ_LS483422.1     UA.A....C.CA..A...A....C..U.A..AC...G.G....U..U..CA.........G.....U.....C..U...AU.G..UU......C..CG....C..U.GC...A..A...A.....A..U.G..UUC...A...U..A..A.U.......................................................................GGC.C..A..AG..G.U..A..C.A.....U.U.U......A..A...U.G.U..U..UG.GGA.CU..CU.G.U.....C.CUGAC...UGAAAAUGC.G.G.UA.C.UUGCAUUUGAAUAUGGCUAC..............GC..C.ACG.A.....CU.G.A.C..C..C.U..CGC..A..C..G..CU
   NZ_LS483443.1     UA.A....C.CA..A...A....A..A.G..AC...G.G....U..A..CC.........A.....G.....C..U...AU.G..U-......-..GC....C..A.UU...G..A...C.....C..C.A..AUU...A...C..A..-.-cg..................................................................cc.AAU.C..A..AG..G.U..C..G.C.....U.U.U......G..A...A.G.U..A..UG.GGA.UU..CC.G.U.....U.UUAAC...CGAAGAAGG.G.G.UG.C.UUGCCUUUGAAUAUGGUUAU..............GC..C.ACC.A.....CG.G.A.U..C..C.G..AAA..A..C..U..UU
   NZ_LS483470.1     CA.A....C.CA..G...A....A..A.G..AC...G.G....U..U..CC.........U.....A.....C..U...AU.A..UA......C..CU....C..U.GG...C..G...A.....A..C.A..UUC...A...C..A..G.U.......................................................................GGG.C..A..GA..G.C..G..G.A.....U.U.U......C..A...G.G.U..G..UG.GGA.UU..CU.G.U.....G.CUAAC...GGAAGCGGG.C.G.UG.C.UGGCCUUUGAGUACGGCUAU..............GC..G.ACC.G.....CA.G.A.C..C..C.C..CGU..A..C..G..CU
   NZ_LS999205.1     CA.A....C.CA..G...A....A..G.G..AC...G.C....C..G..GC.........A.....C.....C..U...AC.A..UC......C..CG....U..U.GC...A..G...C.....A..-.-..CCU...G...U..A..CgA.......................................................................AGG.C..C..AG..C.C..A..C.G....uU.U.C......G..Ac.cU.G.U..A..CG.---.AU..UC.G.U.....UcCUGUC...CGAAGAAGC.C.G.UA.C.UGGCGUUCGAAUACGGCUAC..............UC..C.ACC.A.....CC.A.C.G..C..C.U..AAC..G..C..G..CU
   NZ_LT615367.1     UA.A....C.CA..G...A....A..A.G..GC...G.G....U..U..CU.........A.....C.....U..U...AU.A..CA......C..CG....C..U.GA...U..G...C.....A..U.G..UCC...A...U..A..A.C.......................................................................GCG.C..A..AG..G.C..G..U.G.....U.U.U......A..A...U.G.U..C..UG.GGA.CU..CU.G.U.....U.CUGUC...AGAAGAAGC.C.G.UA.C.UGGCAUUUGAAUACGGCUAU..............GC..G.ACG.G.....CA.G.A.A..C..C.G..CGU..A..C..G..CU
   NZ_LT897836.1     CC.A....A.AA..A...A....C..U.G..GC...-.-....-..U..UA.........A.....G.....U..U...AU.A..CU......C..CG....U..U.GU...C..U...C.....A..U.A..UCC...A...U..A..A.U.......................................................................GCU.C..A..AG..G.C..A..G.C.....U.U.C......U..A...C.G.U..U..UU.GGA.CU..CU.G.U.....G.CUUUC...GGAGGAGGC.A.G.UU.C.UGGCAUUUGAAUAUGGUUAU..............GC..C.ACC.G.....CC.G.A.A..C..C.G..CGC..A..C..U..UU
   NZ_LT906479.1     CA.A....C.CA..G...A....A..A.A..AC...G.G....U..U..CG.........G.....U.....C..U...AC.G..UG......C..CG....C..U.GG...C..G...A.....A..U.G..UGC...A...C..A..G.C.......................................................................GGC.C..A..GG..G.C..G..A.A.....U.U.C......A..A...G.G.U..C..UG.GGA.CU..CG.G.U.....G.CUGUC...CGAAGAGGC.G.G.UG.C.UGGCGUUCGAAUACGGUUAC..............GC..C.ACC.G.....CC.G.A.G..C..C.G..CGC..A..C..C..CU
   NZ_LT907988.1     AC.G....C.UG..G...A....A..C.G..AC...G.G....C..-..--.........A.....C.....C..U...AC.A..UU......C..CG....C..U.GC...A..G...A.....A..C.G..UCU...C...C..G..A.C.......................................................................GCG.C..A..G-..G.C..G..C.C....uU.U.C......G..U...C.G.U..C..AU.CGA.CU..CG.G.U.....G.CUGUC...GGAAGAGGC.C.G.UG.C.UGGGCUUCGAAUACGGCUAC..............UC..C.UCG.G.....CC.G.A.G..C..C.C..AAC..A..C..G..CU
   NZ_OU594967.1     UA.G....U.CA..A...G....A..U.G..AU...G.G....U..U..CU.........G.....U.....C..U...AU.A..UG......C..CG....C..U.UA...A..G...C.....A..U.A..UUA...G...U..G..A.U.......................................................................AAG.C..A..AG..G.U..A..U.G.....U.U.G.....uC..A...U.-.U..G..UA.UGA.UU..CU.G.U.....G.CUGUC...AGAAGAGGC.U.G.UU.U.UAGCAUAUGAAUAUGGCUAU..............UC..A.ACG.G.....CA.C.A.A..C..-.-..---..-..-..-..CU


   Structure         ((........((..(...(............((...(.(.......(..((............................((.(..((.........((.......(.((........................(((.......................................................................................)))...........).)..)..).)................)..)...).).)........))).....)).).).....).))).....))....((..(.(.((.(.(((..((((....((((.................))..).).........)).).)....)..).)...))..)..)..)..))


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sdhC-sdhD-sdhA-sdhB-sucA-sucB-sucC-sucD-sdhX



Position: 5657-5771, Conformation: #1







97% 90% 75% 50% Nucleotide present N N N Nucleotide identify E < 0.1 Base-pair covariation E < 0.05 Helix-level covariation 97% 90% 75%

Y R A Y C A R R A Y G R R Y Y U A Y R Y C C R Y U R A Y Y C R R Y Y U Y R R U R A Y U C R U Y U R U C G A A G A R G C G U R Y U G G C U U Y G A A U A Y G G Y U A Y G C A C R C G A R C C R Y R Y U 5'