sdhC-sdhD-sdhA-sdhB-sucA-sucB-sucC-sucD-sdhX



Position: 5542-5681, Conformation: #1







DMS reactivity > 1.0 0.0 0.4 0.7 G/U/No data
Position: 0 (position.label in template: 0.5')5' Position: 1 (position.label in template: 1.C) Reactivity: nanC Position: 2 (position.label in template: 2.U) Reactivity: nanU Position: 3 (position.label in template: 3.G) Reactivity: nanG Position: 4 (position.label in template: 4.G) Reactivity: nanG Position: 5 (position.label in template: 5.G) Reactivity: nanG Position: 6 (position.label in template: 6.G) Reactivity: nanG Position: 7 (position.label in template: 7.C) Reactivity: nanC Position: 8 (position.label in template: 8.G) Reactivity: nanG Position: 9 (position.label in template: 9.G) Reactivity: nanG Position: 10 (position.label in template: 10.U) Reactivity: nanU Position: 11 (position.label in template: 11.G) Reactivity: nanG Position: 12 (position.label in template: 12.C) Reactivity: nanC Position: 13 (position.label in template: 13.G) Reactivity: nanG Position: 14 (position.label in template: 14.G) Reactivity: nanG Position: 15 (position.label in template: 15.A) Reactivity: nanA Position: 16 (position.label in template: 16.A) Reactivity: nanA Position: 17 (position.label in template: 17.A) Reactivity: nanA Position: 18 (position.label in template: 18.A) Reactivity: nanA Position: 19 (position.label in template: 19.C) Reactivity: nanC Position: 20 (position.label in template: 20.C) Reactivity: nanC Position: 21 (position.label in template: 21.U) Reactivity: nanU Position: 22 (position.label in template: 22.C) Reactivity: nanC Position: 23 (position.label in template: 23.G) Reactivity: nanG Position: 24 (position.label in template: 24.C) Reactivity: nanC Position: 25 (position.label in template: 25.U) Reactivity: nanU Position: 26 (position.label in template: 26.U) Reactivity: nanU Position: 27 (position.label in template: 27.A) Reactivity: nanA Position: 28 (position.label in template: 28.C) Reactivity: nanC Position: 29 (position.label in template: 29.G) Reactivity: nanG Position: 30 (position.label in template: 30.C) Reactivity: nanC Position: 31 (position.label in template: 31.C) Reactivity: nanC Position: 32 (position.label in template: 32.A) Reactivity: nanA Position: 33 (position.label in template: 33.C) Reactivity: nanC Position: 34 (position.label in template: 34.G) Reactivity: nanG Position: 35 (position.label in template: 35.C) Reactivity: 0C Position: 36 (position.label in template: 36.U) Reactivity: nanU Position: 37 (position.label in template: 37.G) Reactivity: nanG Position: 38 (position.label in template: 38.G) Reactivity: nanG Position: 39 (position.label in template: 39.U) Reactivity: nanU Position: 40 (position.label in template: 40.U) Reactivity: nanU Position: 41 (position.label in template: 41.G) Reactivity: nanG Position: 42 (position.label in template: 42.A) Reactivity: 1A Position: 43 (position.label in template: 43.U) Reactivity: nanU Position: 44 (position.label in template: 44.G) Reactivity: nanG Position: 45 (position.label in template: 45.A) Reactivity: 0A Position: 46 (position.label in template: 46.A) Reactivity: 0A Position: 47 (position.label in template: 47.G) Reactivity: nanG Position: 48 (position.label in template: 48.G) Reactivity: nanG Position: 49 (position.label in template: 49.C) Reactivity: 0.5C Position: 50 (position.label in template: 50.A) Reactivity: 1A Position: 51 (position.label in template: 51.U) Reactivity: nanU Position: 52 (position.label in template: 52.U) Reactivity: nanU Position: 53 (position.label in template: 53.C) Reactivity: 0C Position: 54 (position.label in template: 54.C) Reactivity: 0C Position: 55 (position.label in template: 55.G) Reactivity: nanG Position: 56 (position.label in template: 56.G) Reactivity: nanG Position: 57 (position.label in template: 57.U) Reactivity: nanU Position: 58 (position.label in template: 58.U) Reactivity: nanU Position: 59 (position.label in template: 59.C) Reactivity: 0C Position: 60 (position.label in template: 60.G) Reactivity: nanG Position: 61 (position.label in template: 61.C) Reactivity: 0C Position: 62 (position.label in template: 62.C) Reactivity: 0C Position: 63 (position.label in template: 63.U) Reactivity: nanU Position: 64 (position.label in template: 64.G) Reactivity: nanG Position: 65 (position.label in template: 65.U) Reactivity: nanU Position: 66 (position.label in template: 66.C) Reactivity: 1C Position: 67 (position.label in template: 67.G) Reactivity: nanG Position: 68 (position.label in template: 68.G) Reactivity: nanG Position: 69 (position.label in template: 69.G) Reactivity: nanG Position: 70 (position.label in template: 70.U) Reactivity: nanU Position: 71 (position.label in template: 71.G) Reactivity: nanG Position: 72 (position.label in template: 72.A) Reactivity: 1A Position: 73 (position.label in template: 73.A) Reactivity: 1A Position: 74 (position.label in template: 74.G) Reactivity: nanG Position: 75 (position.label in template: 75.A) Reactivity: 0.5A Position: 76 (position.label in template: 76.C) Reactivity: 0C Position: 77 (position.label in template: 77.U) Reactivity: nanU Position: 78 (position.label in template: 78.C) Reactivity: 0.5C Position: 79 (position.label in template: 79.C) Reactivity: 0C Position: 80 (position.label in template: 80.G) Reactivity: nanG Position: 81 (position.label in template: 81.G) Reactivity: nanG Position: 82 (position.label in template: 82.U) Reactivity: nanU Position: 83 (position.label in template: 83.C) Reactivity: 0C Position: 84 (position.label in template: 84.G) Reactivity: nanG Position: 85 (position.label in template: 85.C) Reactivity: 0.5C Position: 86 (position.label in template: 86.G) Reactivity: nanG Position: 87 (position.label in template: 87.G) Reactivity: nanG Position: 88 (position.label in template: 88.U) Reactivity: nanU Position: 89 (position.label in template: 89.A) Reactivity: 1A Position: 90 (position.label in template: 90.C) Reactivity: 0C Position: 91 (position.label in template: 91.C) Reactivity: 0C Position: 92 (position.label in template: 92.U) Reactivity: nanU Position: 93 (position.label in template: 93.U) Reactivity: nanU Position: 94 (position.label in template: 94.C) Reactivity: 0C Position: 95 (position.label in template: 95.U) Reactivity: nanU Position: 96 (position.label in template: 96.U) Reactivity: nanU Position: 97 (position.label in template: 97.C) Reactivity: 0.5C Position: 98 (position.label in template: 98.C) Reactivity: 0C Position: 99 (position.label in template: 99.A) Reactivity: 0A Position: 100 (position.label in template: 100.C) Reactivity: 0C Position: 101 (position.label in template: 101.C) Reactivity: 0C Position: 102 (position.label in template: 102.G) Reactivity: nanG Position: 103 (position.label in template: 103.C) Reactivity: 0C Position: 104 (position.label in template: 104.C) Reactivity: 0C Position: 105 (position.label in template: 105.A) Reactivity: 1A Position: 106 (position.label in template: 106.C) Reactivity: 1C Position: 107 (position.label in template: 107.G) Reactivity: nanG Position: 108 (position.label in template: 108.C) Reactivity: 0C Position: 109 (position.label in template: 109.G) Reactivity: nanG Position: 110 (position.label in template: 110.G) Reactivity: nanG Position: 111 (position.label in template: 111.U) Reactivity: nanU Position: 112 (position.label in template: 112.G) Reactivity: nanG Position: 113 (position.label in template: 113.A) Reactivity: 0A Position: 114 (position.label in template: 114.U) Reactivity: nanU Position: 115 (position.label in template: 115.C) Reactivity: 0.5C Position: 116 (position.label in template: 116.C) Reactivity: 1C Position: 117 (position.label in template: 117.A) Reactivity: 0A Position: 118 (position.label in template: 118.C) Reactivity: 0C Position: 119 (position.label in template: 119.A) Reactivity: 0.5A Position: 120 (position.label in template: 120.A) Reactivity: 1A Position: 121 (position.label in template: 121.C) Reactivity: 0.5C Position: 122 (position.label in template: 122.C) Reactivity: 0C Position: 123 (position.label in template: 123.A) Reactivity: 0A Position: 124 (position.label in template: 124.G) Reactivity: nanG Position: 125 (position.label in template: 125.U) Reactivity: nanU Position: 126 (position.label in template: 126.C) Reactivity: 1C Position: 127 (position.label in template: 127.U) Reactivity: nanU Position: 128 (position.label in template: 128.A) Reactivity: 0A Position: 129 (position.label in template: 129.A) Reactivity: 0A Position: 130 (position.label in template: 130.C) Reactivity: 1C Position: 131 (position.label in template: 131.G) Reactivity: nanG Position: 132 (position.label in template: 132.G) Reactivity: nanG Position: 133 (position.label in template: 133.U) Reactivity: nanU Position: 134 (position.label in template: 134.U) Reactivity: nanU Position: 135 (position.label in template: 135.C) Reactivity: 0.5C Position: 136 (position.label in template: 136.C) Reactivity: 0C Position: 137 (position.label in template: 137.A) Reactivity: 1A Position: 138 (position.label in template: 138.C) Reactivity: 0.5C Position: 139 (position.label in template: 139.U) Reactivity: nanU Position: 140 (position.label in template: 140.U) Reactivity: nanU Position: 141 (position.label in template: 141.A) Reactivity: 1A Position: 142 (position.label in template: 142.C) Reactivity: 1C Position: 143 (position.label in template: 143.A) Reactivity: 0A Position: 144 (position.label in template: 144.C) Reactivity: 0C Position: 145 (position.label in template: 145.G) Reactivity: nanG Position: 146 (position.label in template: 146.C) Reactivity: 0C Position: 147 (position.label in template: 147.C) Reactivity: nanC Position: 148 (position.label in template: 148.G) Reactivity: nanG Position: 149 (position.label in template: 149.C) Reactivity: nanC Position: 150 (position.label in template: 150.U) Reactivity: nanU Position: 151 (position.label in template: 151.G) Reactivity: nanG Position: 152 (position.label in template: 152.C) Reactivity: nanC Position: 153 (position.label in template: 153.A) Reactivity: nanA Position: 154 (position.label in template: 154.A) Reactivity: nanA Position: 155 (position.label in template: 155.C) Reactivity: nanC Position: 156 (position.label in template: 156.A) Reactivity: nanA Position: 157 (position.label in template: 157.U) Reactivity: nanU Position: 158 (position.label in template: 158.A) Reactivity: nanA Position: 159 (position.label in template: 159.U) Reactivity: nanU Position: 160 (position.label in template: 160.C) Reactivity: nanC Position: 161 (position.label in template: 161.C) Reactivity: nanC Position: 162 (position.label in template: 162.A) Reactivity: nanA Position: 163 (position.label in template: 163.U) Reactivity: nanU Position: 164 (position.label in template: 164.A) Reactivity: nanA Position: 165 (position.label in template: 165.A) Reactivity: nanA Position: 166 (position.label in template: 166.C) Reactivity: nanC Position: 167 (position.label in template: 167.G) Reactivity: nanG Position: 168 (position.label in template: 168.G) Reactivity: nanG Position: 169 (position.label in template: 169.G) Reactivity: nanG Position: 170 (position.label in template: 170.C) Reactivity: nanC Position: 171 (position.label in template: 171.A) Reactivity: nanA Position: 172 (position.label in template: 172.G) Reactivity: nanG Position: 173 (position.label in template: 173.G) Reactivity: nanG Position: 174 (position.label in template: 174.G) Reactivity: nanG Position: 175 (position.label in template: 175.C) Reactivity: nanC Position: 176 (position.label in template: 176.G) Reactivity: nanG Position: 177 (position.label in template: 177.C) Reactivity: nanC Position: 178 (position.label in template: 178.G) Reactivity: nanG Position: 179 (position.label in template: 179.U) Reactivity: nanU Position: 180 (position.label in template: 180.U) Reactivity: nanU Position: 181 (position.label in template: 181.3')3' 10 20 30 50 100 150


sdhC-sdhD-sdhA-sdhB-sucA-sucB-sucC-sucD-sdhX



Position: 5542-5681, Conformation: #1







Retained alignments:


   NC_002939.5       CUGG...G.G...CA..A.U..GC.C.G..AG.A.CC.C........................U.GGCCUA....CGGGA....C...GCUUCU...G...G.C......C....G.A.....G.....G..G...A.....A........C..C.....U..C.C...A..U...C..C..G.C..C...U...G....U..C.................................CG..GGG..AG.GAU.U.C.CC.G.G.CGCGGCAC...CUUCG.G.C.C.A.CC.GC..CA...U.....................................................GC...A...G..U...G..CUC.CA.CG..A...C...AUG............A....A.......C............A............CC..G............A...A.G.C.....A...UU.C--.-..-----..-..-.-..-..-...---..-...-...-...-...--...-.-..-..-.-..................................................................-...-...--.-.-.....-.-.--
   NC_002977.6       CUGG...G.G...CU..U.C.gGC.G.A..-A.A.CC.C........................U.CGCUUA....CGCCU....C...CCUGCU...G...U.G......G....G.A.....A.....G..G...-.....-........-..-.....C..C.G...C..A...A..C..G.U..C...C...G....A..-cu..........................gac..GG..GCC..AG.GAC.G.U.CG.G.A.CGCGGCAC...UUUUU.U.C.C.A.CC.GC..CA...U.....................................................GC...C...A..U...C..GUC.CA.UG..A...C...CAG............C....G.......G............A............CU..G............G...A.G.A.....G...GU.UUG.C..GCCCC..G..C.U..C..C...AGC..A...C...C...U...-C...A.G..G..G.C..................................................................G...G...GCcA.G.....G.G.CA
   NC_003317.1       CUGG...G.C...GA..C.G..GC.U.G..AA.U.CG.C........................U.GGCGUU....CGGUU....C...ACUGGC...C...G.U......U....G.A.....A.....G..C...U.....C........A..U.....C..C.G...A..U...C..C..G.C..C...U...G....U..C.................................GG..GAC..AG.GAC.G.U.CG.A.G.CGCGGUAC...UUUCU.C.G.C.A.GC.GC..CA...U.....................................................AC...G...G..U...U..CUU.UA.CG..A...U...CAG............G....A.......A............A............AC..C............A...G.A.A.....C...CG.CUA.C..AUCCC..G..C.U..G..A...ACA..A...U...C...U...UC...A.G..A..A.G..................................................................G...G...AC.A.G.....G.C.GA
   NC_003910.7       UUGG...G.G...UA..U.G..GC.U.G..AA.A.AC.U........................U.AGCUUA....UGCAU....C...CAUUGU...U...G.A......U....C.G.....U.....G..G...U.....G........A..U.....C..G.U...G..U...A..C..G.U..A...U...C....A..C.................................AG..GUC..AA.GAU.U.C.UG.G.U.CGUGGUAC...UUUCU.U.C.C.A.UC.GC..CA...U.....................................................GC...U...G..U...A..UUG.CA.UA..A...U...CAA............G....A.......A............G............AC..G............G...U.A.G.....U...AC.CUA.U..UUACC..A..C.U..G..C...AAA..A...U...A...U...CA...G.A..G..A.A..................................................................G...G...CC.A.A.....G.G.CC
   NC_004347.2       UUGG...G.G...CU..U.U..GC.U.G..AA.A.CC.U........................U.AGCUUA....CGCAA....C...GAUUCU...U...G.A......A....G.A....uA.....A..G...C.....A........-..A.....C..G.U...G..U...U..C..G.C..A...U...U....A..C.................................UG..GUC..AA.GAC.U.C.UG.G.C.CGCGGGAC...UUUCU.U.C.C.A.CC.GU..CA...U.....................................................GC...G...G..U...U..CUG.CA.UA..A...C...CAA............A....A.......C............G............AU..G............C...G.A.C.....U...AC.GUA.U..UUACC..A..C.U..G..C...GUA..A...U...A...U...UA...G.C..G..A.U..................................................................G...G...UC.A.A.....G.G.UC
   NC_004556.1       CUGG...G.G...CU..U.U..GC.C.G..AA.A.AU.C........................U.GGCCUA....UGCCA....C...GUUGCU...G...G.C......U....G.A.....A.....G..G...C.....C........A..C.....A..A.G...C..U...A..C..G.C..U...U...G....G..U.................................CG..GCC..AA.GAC.G.C.CG.G.A.CGCGGCAC...CUUUU.U.C.C.A.CC.GC..CA...C.....................................................GC...C...A..U...C..CUG.CA.CG..A...U...CAA............A....A.......A............A............CC..G............A...C.A.G.....C...UA.UUA.U..CUGCC..G..C.U..G..C...ACC..A...A...C...U...-G...G.U..C..A.G..................................................................Caac-...--.-.-.....-.-.--
   NC_004578.1       CUGG...G.G...CU..A.C..GC.C.G..AA.A.CC.A........................U.GGCAUA....CGCCA....C...GCUGGC...G...U.U......C....G.A.....A.....G..G...C.....C........A..C.....C..C.G...A..U...C..C..G.C..A...U...G....A..C.................................AG..GCC..AG.GAC.A.U.CG.G.U.CGCGGUAC...GUUCU.C.G.C.A.CC.GU..CA...C.....................................................GC...U...G..U...G..CUG.CA.CA..A...C...CAG............A....A.......A............G............AC..G............C...C.G.G.....G...AC.UUA.C..AUUCC..G..C.U..A..C...AGA..A...U...C...-...--...-.-..-..-.-ugua......................................................cgccg...-...-...GU.C.A.....G.C.CG
   NC_004603.1       CUGG...G.G...UA..U.G..GC.U.G..AA.A.CA.U........................U.GGCUUA....CGCGA....C...AUUGGU...A...G.A......C....G.A.....U.....G..G...U.....A........A..G.....C..G.U...A..U...C..C..G.U..A...U...U....U..C.................................UG..GUC..AG.GAC.U.C.AG.G.U.CGUGGUAC...UUUCU.U.C.C.A.UC.GU..CA...C.....................................................UC...A...G..U...U..CUU.CA.CA..A...C...CAA............U....C.......A............G............AU..G............C...A.A.G.....C...AC.UUA.C..AUCCC..G..C.U..A..G...CGA..A...U...A...U...CC...A.U..G..A.C..................................................................A...A...GC.A.G.....G.G.GC
   NC_005027.1       CUGG...G.C...CA..C.C..GC.G.G..AA.G.CC.G........................C.CGCAUU....UGCAU....C...GUUGCU...C...G.A......C....G.C.....G.....G..G...U.....C........A..C.....C..C.G...A..U...C..C..G.A..U...U...G....A..C.................................GG..GCC..AA.GAU.U.G.CG.A.G.CGUGGUAC...GUUCA.G.C.C.A.CC.GC..CA...U.....................................................GC...C...G..U...G..UUG.CA.CG..A...C...AUG............C....G.......C............G............AC..G............G...C.A.A.....C...GA.AUA.C..UGCCC..G..C.U..G..A...AAA..A...C...C...U...CC...A.C..-..-.-gaaaac..................................................caagcuc...G...G...CU.A.-.....-.-.--
   NC_005126.1       CUGG...G.G...UG..C.C..GC.G.G..AA.A.CA.U........................U.GACCUA....UGCAA....C...UUUAGU...G...G.A......U....G.A.....A.....G..G...G.....G........U..U.....C..C.G...G..U...A..C..G.U..U...U...G....U..C.................................UG..GUG..AA.GAU.G.C.CG.G.U.CGUGGUAC...UUUCU.U.C.C.A.UC.GU..CA...U.....................................................GC...G...G..U...U..AUC.CA.UA..A...U...CAG............G....C.......U............A............AC..G............G...U.U.C.....U...GU.UUA.U..GUUCC..U..C.U..G..G...CGA..A...C...G...U...UC...A.U..A..A.C..................................................................G...G...UC.A.G.....G.G.AG
   NC_005861.2       CUGG...G.G...AC..U.U..GC.U.G..AG.C.AU.C........................U.AGCUUA....UGCCU....C...UCUCUU...A...G.A......A....G.A.....A.....G..G...A.....G........U..A.....U..C.A...A..U...A..C..G.C..A...U...A....U..C.................................UG..GCC..AA.GAU.U.G.UU.G.U.CGUGGCAC...UUUCA.G.U.C.A.UC.GC..CA...U.....................................................GC...G...A..U...U..UGG.GU.CG..A...U...CAA............C....A.......U............A............CA..G............A...A.A.A.....G...GA.UUA.U..UAUCC..A.cU.U..G..-...--C..U...C...A...U...CU...A.A..A..A.C...............................................................a.aG...G...AC.A.A.....G.G.UA
   NC_005966.1       CUGG...G.G...UG..C.U..GC.U.G..AG.A.CG.C........................U.GGCCUA....CGCGA....C...ACUUAU...U...G.A......U....G.A.....A.....G..G...U.....U........A..U.....U..U.G...G..U...U..C..G.U..A...U...U....A..C.................................GG..GUG..AA.GAU.G.U.AG.G.U.CGUGGUAC...GUUCU.C.A.C.A.UC.GU..CA...U.....................................................GC...C...A..A...G..UUA.CA.CA..A...U...CAA............G....U.......A............G............AU..G............G...U.U.C.....G...AC.CUA.U..AUUCC..A..C.U..G..U...GUC..A...U...G...U...GA...A.GgaA..A.A..................................................................C...C...A-.-.-.....-.-.--
   NC_006300.1       UUGG...G.G...CA..U.G..GC.G.G..AA.A.CU.A........................U.GGCUUA....CGCUA....C...CUUAUU...G...G.A......U....G.A.....C.....G..G...A.....C........A..U.....C..A.U...A..U...U..C..G.U..A...U...U....U..C.................................CG..GCG..AA.GAU.U.C.CG.G.A.CGAGGCAC...GUUCU.U.C.C.A.CC.GU..UU...A.....................................................GC...C...G..U...A..UUG.CA.CA..A...U...AUG............A....A.......C............G............AA..C............G...U.A.A.....A...GC.CUA.U..AUUCC..G..U.U..A..A...UGA..A...U...U...U...GC...A.U..C..A.G..................................................................G...G...GC.A.A.....G.G.GC
   NC_006512.1       CUGG...G.G...UU..U.C..GC.U.G..AA.A.CU.U........................U.GGCUUA....UGCCA....C...CUUAGU...U...A.A......C....G.A.....C.....G..G...U.....Acu...cauA..U.....U..C.G...U..U...U..G..A.C..C...-...-....-..-.................................-G..GUC..AG.GAC.A.G.CG.G.C.CGUGGUAC...CUUCU.U.C.C.A.CC.GC..CA...C.....................................................GC...G...G..U...A..UUG.CA.UA..A...C...CAA............A....A.......A............G............AU..G............G...U.U.C.....U...AC.CUA.U..AUGCC..A..C.U..G..A...ACA..A...C...U...U...--...-.-..-..A.G..................................................................G...U...UC.A.G.....A.G.CA
   NC_006513.1       CUGG...G.G...GA.uG.G..GC.G.A..G-.A.AC.C........................U.CGCCUA....CG-CG....A...GCCUGC...U...C.G......C....G.C.....A.....A..G...G.....G........U..U.....C..G.G..cG..U...G..C..G.C..A...U...C....U..C.................................CG..GCG..AG.GAC.G.U.CG.G.C.CGCGGCAC...GUUCU.U.C.C.A.CC.GC..CA...C.....................................................GC...A...G..U...G..CUG.CA.CG..A...C...CAG............A....A.......G............C............GC..Gagc.....gcugG...G.A.CcagggC...AC.CUA.C..GUGCC..G..C.U..G..A...AGC..A...U...A...U...CC...A.G..G..A.C..................................................................G...G...CC.A.G.....G.C.CG
   NC_007164.1       CUGG...G.G...CU..U.C..GC.C.G..AG.C.UA.C........................U.GGCAUU....CGGCU....C...CCUGGU...U...C.A......C....G.G.....U.....G..G...C.....A........A..G.....C..U.C...G..U...G..C..G.C..C...U...G....G..U.................................CG..GUG..AG.GAU.U.C.CC.U.G.CGUGGUAC...CUUCA.C.C.C.A.GC.GU..CA...C.....................................................GC...C...G..U...G..CUC.UU.CG..A...C...CAC............A....C.......C............G............AC..C............A...C.G.A.....C...CG.CUA.C..AGCCC..G..C.U..G..G...AAG..A...G...C...U...CG...-.-..-..-.-cacgc.....................................................gaguc...C...G...GC.A.A.....G.G.GC
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   NZ_OU594967.1     UUGG...G.G...GU..U.U..GC.A.G..AA.A.AU.C........................U.AGCUUA....UGCCA....C...AUUACU...C...G.A......U....-.-.....A.....U..G...G.....G........C..G.....C..C.G...G..A...AuaC..G.C..U...U...G....A..C.................................UG..GGC..AG.GAU.U.C.UG.G.U.CGUGGCAC...GUUUU.U.C.C.A.UC.GU..CA...U.....................................................GC...G...G..U...A..UUA.CA.UA..G...U...CAA............G....A.......U............G............AU..G............G...U.U.C.....U...GU.CUA.U..AUGCC..G..C.U..U..A...AGC..A...U...A...U...UA...G.U..G..A.U..................................................................A...A...GC.A.A.....G.G.UA
   NZ_OU907312.1     UUGG...G.G...GG..G.G..GC.C.G..AA.A.CC.C........................U.GGCUUA....UGCCA....C...CCUGUU...G...G.C......G....C.A.....A.....G..G...U.....A........U..U....gA..U.G...U..G...C..G..A.C..U...A...-....U..C.................................UG..GUC..AG.GAU.A.G.UG.G.C.CGUGGUAC...CUUUU.U.C.C.A.UC.GC..CA...U.....................................................GU...G...G..U...G..CUA.CA.UC..A...U...CAA............C....A.......A............G............AA..G............A...U.C.G.....C...UG.UUA.U..AUACC..G..C.U..U..G...CCC..-...-...-...-...--...-.-..-..-.-accuaca.................................................gccacaa...-...-...CA.G.G.....G.C.CG
   NZ_OU912926.1     UUGG...G.G...CA..U.G..GC.G.G..AA.A.AC.A........................U.GGCAUA....UGCCA....G...CUUGGU...A...G.C......U....G.A.....G.....G..G...U.....A........U..U.....C..C.G...G..U...U..C..G.U..U...U...A....U..C.................................UG..GGG..AG.GAC.A.G.CG.C.G.CGCGGUAC...CUUUU.U.C.C.A.UC.GU..CA...U.....................................................GC...C...G..U...G..CUG.CA.CG..A...C...CAA............A....A.......U............-............-C..G............A...G.U.G.....C...AG.UGG.G..ACAAG..G..-.G..C..U...AUC..A...C...A...U...UC...-.-..-..-.-..................................................................-...-...--.-.-.....-.-.--
   NZ_OW485601.1     CUGG...G.C...GA..C.C..GG.C.G..AG.G.CA.C........................U.GGCCUU....CGGCA....C...GCUGCU...G...G.U......G....G.A.....A.....G..G...C.....A........A..C.....C..G.C...G..U...G..C..G.G..C...U...G....U..C.................................GG..GCG..AG.GAC.U.G.CC.A.G.CGCGGCAC...CUUCA.G.C.C.A.GC.GC..CA...C.....................................................GC...C...G..U...G..CUG.GU.CG..A...C...CAG............A....C.......C............A............GC..C............A...G.A.A.....C...GA.AUA.C..GUGC-..-..-.-..-..-...---..-...-...-...-...--...-.-..-..-.-..................................................................-...-...--.-.-.....-.-.--
   NZ_OX366324.1     CUGG...-.G...CA.aC.U..GC.U.G..AA.A.GU.C........................U.UGCAUU....CGCGU....C...AUUGCU...U...A.A......A....G.A.....A.....G..G...A.....A........U..A.....G..G.A...G..U...G..C..G.C..U...U...G....U..C.................................AG..GAC..AA.GAU.U.C.UG.G.U.CGCGGCAC...CUUCU.C.G.C.A.CC.G-..--...-ucauuc......................................aagacu...-U...G...U..U...G..AUC.AA.GU..A...A...CAG............A....A.......G............A............AA..C............G...U.U.U.....-...--.---.-..-----..-..-.-..-..-...---..-...-...-...-...--...-.-..-..-.-..................................................................-...-...--.-.-.....-.-.--
   NZ_OX366335.1     CUGG...-.G...CA.aC.U..GC.U.G..AA.A.GU.C........................U.UGCAUU....CGCGU....C...AUUGCU...U...A.A......A....G.A.....A.....G..G...A.....A........U..A.....G..G.A...G..U...G..C..G.C..U...U...G....U..C.................................AG..GAC..AA.GAU.U.C.UG.G.U.CGCGGUAC...CUUCU.C.G.C.A.CC.G-..--...-ucauuc......................................aagacu...-U...G...U..U...G..AUC.AA.GU..A...A...CAG............A....A.......G............A............AA..C............G...U.U.U.....-...--.---.-..-----..-..-.-..-..-...---..-...-...-...-...--...-.-..-..-.-..................................................................-...-...--.-.-.....-.-.--


   Structure         ((((...(.(...((.......((.(.(...................................).))).......))))....................................(.(.....(.....(..(...........................(..(.(...(.........(..(.(..(...(.............................................))..)))...........).)).)..........)...))))......(.(.((.((.............................................................))...)...)..)...).................)...))).................................................................................................((((.....(.(..(..(........................((................................................................................)...)...)).).).....).).))


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sdhC-sdhD-sdhA-sdhB-sucA-sucB-sucC-sucD-sdhX



Position: 5542-5681, Conformation: #1







97% 90% 75% 50% Nucleotide present N N N Nucleotide identify E < 0.1 Base-pair covariation E < 0.05 Helix-level covariation 97% 90% 75%

Y U G G G Y G C G A R Y U G C U Y G C Y U R U R G A R G G Y Y R U C G Y U C G G Y A R G A Y Y G G C G Y G G Y A C U U C Y C A C G Y C A Y R C G U U Y R Y R A Y C A R R R Y G R U R Y R Y C C Y U 5'