sdhC-sdhD-sdhA-sdhB-sucA-sucB-sucC-sucD-sdhX



Position: 5207-5316, Conformation: #1







DMS reactivity > 1.0 0.0 0.4 0.7 G/U/No data
Position: 0 (position.label in template: 0.5')5' Position: 1 (position.label in template: 1.C) Reactivity: nanC Position: 2 (position.label in template: 2.C) Reactivity: nanC Position: 3 (position.label in template: 3.G) Reactivity: nanG Position: 4 (position.label in template: 4.A) Reactivity: nanA Position: 5 (position.label in template: 5.C) Reactivity: nanC Position: 6 (position.label in template: 6.A) Reactivity: nanA Position: 7 (position.label in template: 7.C) Reactivity: nanC Position: 8 (position.label in template: 8.C) Reactivity: nanC Position: 9 (position.label in template: 9.G) Reactivity: nanG Position: 10 (position.label in template: 10.C) Reactivity: nanC Position: 11 (position.label in template: 11.G) Reactivity: nanG Position: 12 (position.label in template: 12.C) Reactivity: nanC Position: 13 (position.label in template: 13.A) Reactivity: nanA Position: 14 (position.label in template: 14.A) Reactivity: nanA Position: 15 (position.label in template: 15.A) Reactivity: nanA Position: 16 (position.label in template: 16.A) Reactivity: nanA Position: 17 (position.label in template: 17.U) Reactivity: nanU Position: 18 (position.label in template: 18.C) Reactivity: nanC Position: 19 (position.label in template: 19.U) Reactivity: nanU Position: 20 (position.label in template: 20.A) Reactivity: nanA Position: 21 (position.label in template: 21.C) Reactivity: nanC Position: 22 (position.label in template: 22.G) Reactivity: nanG Position: 23 (position.label in template: 23.C) Reactivity: nanC Position: 24 (position.label in template: 24.U) Reactivity: nanU Position: 25 (position.label in template: 25.G) Reactivity: nanG Position: 26 (position.label in template: 26.A) Reactivity: nanA Position: 27 (position.label in template: 27.C) Reactivity: nanC Position: 28 (position.label in template: 28.A) Reactivity: nanA Position: 29 (position.label in template: 29.A) Reactivity: nanA Position: 30 (position.label in template: 30.G) Reactivity: nanG Position: 31 (position.label in template: 31.C) Reactivity: nanC Position: 32 (position.label in template: 32.U) Reactivity: nanU Position: 33 (position.label in template: 33.G) Reactivity: nanG Position: 34 (position.label in template: 34.G) Reactivity: nanG Position: 35 (position.label in template: 35.A) Reactivity: 1A Position: 36 (position.label in template: 36.G) Reactivity: nanG Position: 37 (position.label in template: 37.C) Reactivity: 0.5C Position: 38 (position.label in template: 38.A) Reactivity: 0.5A Position: 39 (position.label in template: 39.G) Reactivity: nanG Position: 40 (position.label in template: 40.G) Reactivity: nanG Position: 41 (position.label in template: 41.A) Reactivity: 0A Position: 42 (position.label in template: 42.A) Reactivity: 0.5A Position: 43 (position.label in template: 43.A) Reactivity: 0.5A Position: 44 (position.label in template: 44.A) Reactivity: 1A Position: 45 (position.label in template: 45.A) Reactivity: 0.5A Position: 46 (position.label in template: 46.G) Reactivity: nanG Position: 47 (position.label in template: 47.U) Reactivity: nanU Position: 48 (position.label in template: 48.G) Reactivity: nanG Position: 49 (position.label in template: 49.G) Reactivity: nanG Position: 50 (position.label in template: 50.C) Reactivity: 0C Position: 51 (position.label in template: 51.G) Reactivity: nanG Position: 52 (position.label in template: 52.A) Reactivity: 0A Position: 53 (position.label in template: 53.C) Reactivity: 0C Position: 54 (position.label in template: 54.G) Reactivity: nanG Position: 55 (position.label in template: 55.C) Reactivity: 1C Position: 56 (position.label in template: 56.U) Reactivity: nanU Position: 57 (position.label in template: 57.G) Reactivity: nanG Position: 58 (position.label in template: 58.G) Reactivity: nanG Position: 59 (position.label in template: 59.A) Reactivity: 0A Position: 60 (position.label in template: 60.A) Reactivity: 1A Position: 61 (position.label in template: 61.G) Reactivity: nanG Position: 62 (position.label in template: 62.A) Reactivity: 0.5A Position: 63 (position.label in template: 63.U) Reactivity: nanU Position: 64 (position.label in template: 64.G) Reactivity: nanG Position: 65 (position.label in template: 65.C) Reactivity: 0C Position: 66 (position.label in template: 66.C) Reactivity: 0C Position: 67 (position.label in template: 67.A) Reactivity: 0A Position: 68 (position.label in template: 68.C) Reactivity: 0C Position: 69 (position.label in template: 69.C) Reactivity: 0.5C Position: 70 (position.label in template: 70.G) Reactivity: nanG Position: 71 (position.label in template: 71.A) Reactivity: 1A Position: 72 (position.label in template: 72.G) Reactivity: nanG Position: 73 (position.label in template: 73.A) Reactivity: 1A Position: 74 (position.label in template: 74.U) Reactivity: nanU Position: 75 (position.label in template: 75.G) Reactivity: nanG Position: 76 (position.label in template: 76.G) Reactivity: nanG Position: 77 (position.label in template: 77.U) Reactivity: nanU Position: 78 (position.label in template: 78.U) Reactivity: nanU Position: 79 (position.label in template: 79.A) Reactivity: 0A Position: 80 (position.label in template: 80.A) Reactivity: 0.5A Position: 81 (position.label in template: 81.C) Reactivity: 0.5C Position: 82 (position.label in template: 82.C) Reactivity: 0C Position: 83 (position.label in template: 83.U) Reactivity: nanU Position: 84 (position.label in template: 84.G) Reactivity: nanG Position: 85 (position.label in template: 85.U) Reactivity: nanU Position: 86 (position.label in template: 86.A) Reactivity: 0.5A Position: 87 (position.label in template: 87.C) Reactivity: 0.5C Position: 88 (position.label in template: 88.C) Reactivity: 0C Position: 89 (position.label in template: 89.G) Reactivity: nanG Position: 90 (position.label in template: 90.C) Reactivity: 0C Position: 91 (position.label in template: 91.G) Reactivity: nanG Position: 92 (position.label in template: 92.A) Reactivity: 0A Position: 93 (position.label in template: 93.U) Reactivity: nanU Position: 94 (position.label in template: 94.G) Reactivity: nanG Position: 95 (position.label in template: 95.C) Reactivity: 0C Position: 96 (position.label in template: 96.G) Reactivity: nanG Position: 97 (position.label in template: 97.C) Reactivity: 0C Position: 98 (position.label in template: 98.U) Reactivity: nanU Position: 99 (position.label in template: 99.G) Reactivity: nanG Position: 100 (position.label in template: 100.G) Reactivity: nanG Position: 101 (position.label in template: 101.A) Reactivity: 1A Position: 102 (position.label in template: 102.U) Reactivity: nanU Position: 103 (position.label in template: 103.G) Reactivity: nanG Position: 104 (position.label in template: 104.C) Reactivity: 0C Position: 105 (position.label in template: 105.U) Reactivity: nanU Position: 106 (position.label in template: 106.G) Reactivity: nanG Position: 107 (position.label in template: 107.G) Reactivity: nanG Position: 108 (position.label in template: 108.C) Reactivity: 0C Position: 109 (position.label in template: 109.G) Reactivity: nanG Position: 110 (position.label in template: 110.A) Reactivity: 1A Position: 111 (position.label in template: 111.U) Reactivity: nanU Position: 112 (position.label in template: 112.U) Reactivity: nanU Position: 113 (position.label in template: 113.G) Reactivity: nanG Position: 114 (position.label in template: 114.C) Reactivity: 0C Position: 115 (position.label in template: 115.G) Reactivity: nanG Position: 116 (position.label in template: 116.U) Reactivity: nanU Position: 117 (position.label in template: 117.A) Reactivity: 1A Position: 118 (position.label in template: 118.G) Reactivity: nanG Position: 119 (position.label in template: 119.U) Reactivity: nanU Position: 120 (position.label in template: 120.G) Reactivity: nanG Position: 121 (position.label in template: 121.G) Reactivity: nanG Position: 122 (position.label in template: 122.C) Reactivity: nanC Position: 123 (position.label in template: 123.A) Reactivity: nanA Position: 124 (position.label in template: 124.G) Reactivity: nanG Position: 125 (position.label in template: 125.A) Reactivity: nanA Position: 126 (position.label in template: 126.G) Reactivity: nanG Position: 127 (position.label in template: 127.U) Reactivity: nanU Position: 128 (position.label in template: 128.G) Reactivity: nanG Position: 129 (position.label in template: 129.G) Reactivity: nanG Position: 130 (position.label in template: 130.C) Reactivity: nanC Position: 131 (position.label in template: 131.G) Reactivity: nanG Position: 132 (position.label in template: 132.U) Reactivity: nanU Position: 133 (position.label in template: 133.C) Reactivity: nanC Position: 134 (position.label in template: 134.C) Reactivity: nanC Position: 135 (position.label in template: 135.G) Reactivity: nanG Position: 136 (position.label in template: 136.A) Reactivity: nanA Position: 137 (position.label in template: 137.U) Reactivity: nanU Position: 138 (position.label in template: 138.G) Reactivity: nanG Position: 139 (position.label in template: 139.A) Reactivity: nanA Position: 140 (position.label in template: 140.A) Reactivity: nanA Position: 141 (position.label in template: 141.C) Reactivity: nanC Position: 142 (position.label in template: 142.A) Reactivity: nanA Position: 143 (position.label in template: 143.U) Reactivity: nanU Position: 144 (position.label in template: 144.G) Reactivity: nanG Position: 145 (position.label in template: 145.C) Reactivity: nanC Position: 146 (position.label in template: 146.A) Reactivity: nanA Position: 147 (position.label in template: 147.C) Reactivity: nanC Position: 148 (position.label in template: 148.U) Reactivity: nanU Position: 149 (position.label in template: 149.C) Reactivity: nanC Position: 150 (position.label in template: 150.U) Reactivity: nanU Position: 151 (position.label in template: 151.3')3' 10 20 30 50 100


sdhC-sdhD-sdhA-sdhB-sucA-sucB-sucC-sucD-sdhX



Position: 5207-5316, Conformation: #1







Retained alignments:


   NC_004347.2       CGCC.ACGUA.A..G...A....UUUA.C.GCU..GACA.................................AAC...U.G.A......U....C...G...C..A..G..A....A.AA...C...A.CC..A.U.U...G...C...UG.....C..C..GAU..GA...............................................CGUGACCG...GCA.UGAUCA...ACACUUACCGCGAUG.CUUUAGAC.C......................AAGGUGA.UUGCGUA...GUG.AA.AGAAUG.G.CGU..C.....CA.AUG...A....C..A.................................CUG.....C.A...UA.CC
   NC_004603.1       CUCC.UCGUA.A..A...C....UGUA.C.GCC..GAUG.................................UUC...U.G.A......U....U...G...AuaA..G..A....A.UG...A...G.U-..-.C.G...G...A...UA.....U..U..GAA..AC...............................................UGCAACGC...AGU.UGGUGA...ACGAGUAUCGUGAUG.CACUUGAC.C......................GCGGUGA.AGUCGUG...GUG.AA.AGAGUG.G.CGU..C.....CG.AUG...G....C..A.................................UUG.....C.A...UU.CU
   NC_005126.1       CGCC.ACGUA.A..A...A....UCUA.U.GGU..GACA.................................AGC...U.G.G......U....G...G...C..U..G..A....G.AA...C...U.UG..A.U.A...U...C...AG.....U..C..GAU..GA...............................................UGUGACCG...AGA.UAGUUA...ACCUGUAUCGUGAUG.CCCUUGAC.C......................GUGGUGA.UUGUGUC...GUU.GA.UGAGUG.G.CGU..U.....CA.AUG...G....G..G.................................CUG.....C.A...CU.CA
   NC_007712.1       CGCC.GCGCA.A..G...A....UCUA.U.GCC..GACC.................................GCC...U.G.G......A....G...C...G..C..G..A....-.--...-...-.--..-.-.-...-...-...--.....-..-..---..--cggcauuaucacu.................cucgccgacgccac...------UG...AAC.AGGUCA...AUGUGUUCCGCGACG.CGCUGGAU.C......................AGGGCGA.GUGCGUG...GUG.AA.AGAGUG.G.CGG..C.....AG.AUG...A....A..U.................................AUG.....C.A...CU.CC
   NC_007954.1       CGCC.GCGUA.A..G...A....UUUA.C.GCC..GACA.................................AGU...U.G.A......U...uG...C...U..G..A..A....A.AU...A...G.CA..U.U.G...C...C...GA.....-..A..GAA..GA...............................................UGUCACAG...GUU.UAAUCA...ACCAUUACCGUGAUG.CGCUGGAU.C......................ACGGCGA.CUGCGUG...GUG.AA.AGAGUG.G.CGU..C.....CG.AUG...U....C..U.................................GAG.....C.G...UC.CG
   NC_008345.1       CGCC.ACGUA.A..A...A....UUUA.U.GCU..GAUA.................................AGU...U.G.A.....uA....G...C...U..G..A..A....A.AC...A...G.-C..A.U.U...C...C...UG.....C..C..GAU..GA...............................................AGUGACCG...GAC.UGAUUA...ACCAUUAUCGUGAUG.CAUUAGAU.G......................CAGGUGA.UUGUGUG...GUU.AA.AGAAUG.G.CGU..C.....CU.AUG...AcguuA..C.................................AUA.....C.A...G-.--
   NC_008700.1       CCCC.ACGUA.A..A...A....UCUA.C.GCC..GAUC.................................GCC...U.G.A......U....U...G...C..C..G..A....A.AA...C...G.CC..G.U.C...A...G...UG.....C..C..GAU..GA...............................................CGUGACCG...CCA.UGAUCA...AUGGCUACCGUGAUG.CCCUGGAU.C......................AGGGUGA.CUGUGUA...GUG.AA.AGAAUG.G.CGU..C.....CC.AUG...U....C..A.................................CUG.....C.G...UA.CC
   NC_009092.1       CGCC.ACGUA.A..G...A....UCUA.U.GCC..GACC.................................GUC...U.G.A......U....C...G...A..A..G..A....-.GC...A...G.AC..C.C.U...A...G...GU....gC..A..GAU..GA...............................................UGUGACCG...CGA.UGAUCA...ACGACUACCGCGACG.CGCUAGAU.A......................AAGGCGA.UUGCGUA...GUU.AA.AGAGUG.G.CGU..C.....CA.AUG...A....C..G.................................CUG.....C.A...CA.CG
   NC_009792.1       CGCC.GCGUA.A..A...C....UCUA.C.GCC..GACA.................................AGC...U.G.G......A....A...G...C..G..G..A....C.AA...G...G.UC..G.C.U...A...C...GC.....U..G..GAA..GA...............................................CGCCACUG...AAA.UGGUCA...ACCUCUACCGCGAUG.CGCUGGAU.G......................CAGGCGA.AUGCGUG...GUG.AA.AGAGUG.G.CGU..C.....CG.AUG...A....A..C.................................AUG.....C.A...CU.CC
   NC_009831.1       CGCC.UCGUA.A..A...A....UUUA.U.GCC..GAUC.................................GAU...U.G.AuugccgA....G...C...A..G..A..C...cU.UA...G...G.UG..C.C.G...A...U...--.....-..-..---..GA...............................................CGUCACCU...CUA.UGGUCA...ACGAUUACCGAGAUG.CGCUGGAU.C......................ACGGUGA.UUGUGUC...GUG.UC.UGAAUG.G.CGU..C.....CG.AUG...A....C..A.................................UUG.....C.A...UU.CG
   NC_009901.1       CACC.AAGAA.A..G...A....UUUA.U.GCC..GACA.................................GAC...U.G.A......U....U...G...C..U..G..A....A.AA...U...G.CG..C.U.U...G...G...UA.....G..C..GAU..GA...............................................AGUCACAU...CUA.UGGUGA...ACGAUUACCGUGAUG.CACUCGAU.G......................GCGGUGA.UUGUGUC...GUU.AA.AGAAUG.G.CGA..C.....CA.AUG...A....C..C.................................UUA.....C.A...CU.CG
   NC_010334.1       CACC.AAGAA.A..A...A....UCUA.C.GCU..GAU-agau.....................ugau....UGC...U.G.A......A....A...A...U..A..C..A....C.UU...G...G.UA..G.C.G...A...C...G-.....-..-..---..-A...............................................UGUAACCU...CUA.UGGUCA...ACGCUUAUCGUGAUG.CACUCGAU.G......................AUGGUGA.UUGUGUC...GUU.AA.AGAAUG.G.CGU..C.....CA.AUG...A....C..C.................................UUA.....C.A...UU.CU
   NC_010506.1       CGCC.ACGUA.A..A...A....UCUA.C.GCU..GAUC.................................-GU...U.U.G......A....U...U...-..G..C..U....G.AA...A...G.CA..C.C.C...U...U...GC.....A..GccGAU..GA...............................................AGUUACUU...CGA.UGAUCA...AUGAUUAUCGUGACG.CGCUUGAU.C......................ACGGUGA.UUGUGUU...GUU.GA.AGAGUG.G.CGU..C.....CU.AUG...A....C..A.................................CUG.....C.A...CU.CU
   NC_010554.1       CACC.UCGUA.A..G...A....UCUA.U.GCU..GAUA.................................AGU...U.A.G......U....A...G...A..G..C..A....A.GG...U...U.UA..AuC.G...A...A...GC.....U..-..AAU..GA...............................................UGUUACUG...AGU.UAGUUA...AUCUCUAUCGUGAUG.CUCUCGAU.C......................GUGGUGA.UUGUGUC...GUU.GA.AGAGUA.U.CGU..C.....CU.AUG...G....G..G.................................CUA.....C.A...UU.CU
   NC_010694.1       CGCC.GCGUA.A..G...C....UCUA.U.GCU..GACA.................................AGC...U.G.G......A....G...G...C..C..G..A....G.CA...G...G.UU..G.C.C...A...G...CC.....U..G..GAA..GA...............................................UGCCACUG...AAA.UGGUCA...ACCUGUAUCGCGAUG.CUCUGGAC.G......................AAGGCGA.AUGCGUG...GUG.CC.GGAAUG.G.CGU..C.....CU.AUG...A....G..U.................................CAG.....C.A...CU.CC
   NC_011566.1       CGCC.AAGAA.A..G...A....UCUA.C.GCC..GACA.................................AGC...U.A.A......U....U...G...C..A..G..A....A.AA...U...G.CA..A.U.G...G...G...CG.....C..C..GAU..GA...............................................CGUAACCU...CGA.UGGUGA...AUGCUUAUCGUGACG.CGUUAGAU.G......................AUGGUGA.UUGUGUC...GUU.AA.AGAGUG.G.CGU..C.....CG.AUG...A....C..G.................................UUA.....C.A...CU.CC
   NC_011753.2       CACC.ACGUA.A..G...C....UUUA.C.GCU..GACG.................................UGC...U.A.A......U....G...G...A..G..C..G....U.GG...A...G.--..-.-.-...-...-...--.....-..-..---..--aguuugguau.......................ugauacagcaa...-----CUC...AGC.UAGUUA...ACGAAUAUCGUGAUG.CACUUGAU.C......................ACGGUGA.AGUUGUG...GUU.AA.AGAGUG.G.CGC..C.....CA.AUG...G....C..A.................................CUU.....C.A...CU.CU
   NC_012880.1       CUCC.GCGCA.A..A...A....UCUA.U.GCC..GAUC.................................GCU...U.G.G......A....G...C...G..U..G..A....U.GG...U...A.UC..A.C.A...A...C...GC.....U..G..GAA..GA...............................................CGCAACUG...AAC.UGGUCA...AUUUGUACCGUGACU.CAUUGGAU.G......................CCGGCGA.GUGCGUG...GUU.GA.AGAGUG.G.CGU..C.....CG.AUG...G....A..U.................................AUG.....C.A...CU.CU
   NC_012912.1       CUCC.UCGCA.A..A...A....UUUA.U.GCC..GAUC.................................GUC...U.G.G......A....A...C...A..G..C..A....A.AA...A...G.UG..G.C.G...A...C...GC.....U..G..GAA..GA...............................................CGCUACCG...AGC.UGGUUA...AUCUUUAUCGCGAUG.CGCUGGAU.G......................CCGGCGA.AUGCGUG...GUA.GA.UGAGUG.G.CGU..C.....CG.AUG...G....A..U.................................AUG.....C.A...UU.CU
   NC_012962.1       CUCC.ACGUA.A..A...A....UCUA.C.GCG..GAUA.................................AGC...U.G.G......U....C...G...C..U..G..A....G.AA...C...C.UA..A.U.A...G...C...CG.....U..C..GAU..GA...............................................UGUAAUUG...AGA.UGGUUA...AUCUGUAUCGUGAUG.CCUUAGAC.C......................GUGGUGA.CUGUGUC...GUU.GA.AGAGUG.G.CGU..U.....CA.AUG...G....G..G.................................CUG.....C.A...CU.CC
   NC_013592.1       CGCC.GCGUA.A..A...A....UCUA.C.GCC..GACC.................................GUC...U.G.G......A....A...C...A..G..C..A....G.AA...G...A.UU..G.C.A...A...C...GU.....U..G..GAA..GA...............................................CGCCACCG...AGA.UGGUCA...AUCUUUAUCGCGAUG.CGCUGGAU.G......................CGGGUGA.GUGUGUG...GUA.GA.CGAGUG.G.CGU..C.....CG.AUG...G....A..C.................................AUG.....C.A...CU.CU
   NC_013961.1       CGCC.GCGUA.A..A...A....UCUA.C.GCU..GACA.................................AGC...U.G.G......A....A...G...C..C..G..G....G.CA...G...G.UU..G.C.C...A...G...CC.....U..G..GAA..GA...............................................UGCCACGG...AAA.UGGUCA...ACCUGUACCGUGAUG.CCUUAGAU.G......................AAGGCGA.GUGCGUG...GUG.CC.GGAAUG.G.CGA..C.....CG.AUG...A....G..C.................................CUG.....C.A...CU.CC
   NC_014012.1       CGCC.GCGUA.A..G...A....UUUA.U.GCC..GAUA.................................AGC...U.G.A......U....U...G...C..C..G..A....-.--...-...-.--..-.-.-...-...G...--.....-..-..---..--aauaccuugg........................ccgccgauga...AGUCACUG...GGA.UGAUCA...ACGAUUAUCGCGAUG.CCUUAGAU.C......................ACGGUGA.UUGCGUG...GUG.GA.UGAAUG.G.CGU..C.....CU.AUG...A....C..A.................................CUG.....C.A...UU.CU
   NC_014306.1       CUCC.GCGCA.A..A...C....UCUA.U.GCU..GAUC.................................GUC...U.C.G......A....A...A...G..C..G..A....G.AA...G...A.UU..G.C.C...A...G...CC.....U..G..GAA..GA...............................................UGCCACGG...AAA.UGGUCA...ACCUGUACCGCGACG.CGCUGGAU.G......................CCGGCGA.AUGCGUG...GUG.CC.UGAAUG.G.CGU..C.....CG.AUG...A....G..C.................................CUG.....C.A...CU.CC
   NC_014500.1       CGCC.GCGUA.A..A...A....UUUA.C.GCC..GACC.................................GUC...U.G.G......A....A...C...A..G..C..A....G.CA...A...A.UG..G.C.G...A...C...GC.....U..G..GAA..GA...............................................CGCCACCG...AGC.UGGUCA...AUCUUUACCGCGAUG.CGCUGGAU.G......................CCGGCGA.AUGCGUG...GUA.GA.CGAGUG.G.CGC..C.....CG.AUG...G....A..U.................................AUG.....C.A...CU.CC
   NC_014541.1       CCCC.GCGCA.A..G...A....UCUA.C.GCA..GAC-cg.........................cc....UGA...U.U.G......A....G...C...A..G..G..G....-.--...C...G.UG..A.U.G...A...A...CG.....C..C..GAA..GA...............................................GGUGACGG...AGC.AGAUCA...ACACCUACCGCGAAC.AGCUCGAC.C......................AGGGUGA.AUGCGUG...GUG.CC.GGAAUG.G.CGC..A.....CC.AUG...A....C..A.................................GAG.....C.A...CU.CC
   NC_015567.1       CGCC.GCGCA.A..G...C....UUUA.U.GCU..GACG.................................UUC...U.U.A......C....C...G...A..A..C..A....G.AA...A...G.UC..G.C.G...A...G...CC.....U..G..GAA..GA...............................................UGCCACGG...AAA.UGGUCA...ACCUGUAUCGCGAUG.CGCUCGAU.C......................GUGGCGA.UUGCGUG...GUU.GA.AGAAUG.G.CGU..C.....CG.AUG...A....A..U.................................CUG.....C.A...UU.CC
   NC_015968.1       CUCC.ACGUA.A..A...A....UCUA.U.GCU..GAUA.................................AGC...U.G.G......A....A...G...G..C..G..A....C.AA...A...G.UG..G.C.G...A...C...GC.....U..G..GAA..GA...............................................UGCGACCG...AGC.UGGUCA...AUCUUUACCGCGACG.CACUGGAU.G......................CGGGUGA.GUGCGUA...GUG.AA.AGAGCU.G.CGC..C.....CA.AUG...A....A..C.................................AUG.....C.A...CU.CC
   NC_016041.1       UACC.GCGCG.A..C...A....UUUA.U.GCU..GACC.................................AAU...U.G.A......U....U...G...C..U..G..A....A.GG...C...A.CA..A.U.U...G...A...AA.....A..G..CAC..GA...............................................GGUUGAGA...AGC.UAAUGG...CUGAGUAUAGAGCAG.CAUUAGAU.C......................AUGGUGC.CUGUGUG...GUU.GA.AGAAUG.G.CGU..C.....CA.AUG...A....C..U.................................GAG.....C.A...UU.CA
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   NZ_CP085627.1     CGCC.GCGUA.A..A...C....UCUA.U.GCU..GACA.................................AGC...U.G.G......A....A...G...C..C..G..A....A.AA...G...G.UC..G.C.C...A...G...CC.....U..G..GAA..GA...............................................UGCCACGG...AAA.UGGUCA...ACCUGUACCGUGAUG.CUCUGGAU.G......................CAGGUGA.GUGCGUG...GUA.CC.GGAAUG.G.CGC..C.....CA.AUG...A....G..C.................................CUC.....C.A...CU.CU
   NZ_CP085871.1     CACC.ACGUA.A..A...G....UCUA.U.GCA..GAUC.................................GCC...U.A.G......U....C...G...C..U..G..A....G.GG...U...G.UA..A.U.U...A...A...UG.....A..A..GAA..AA...............................................AGCAACAG...AAC.UAGUUA...ACAACUAUCGUGAUG.CAUUAGAU.C......................GUGGUGA.UUGUGUC...GUU.GA.AGAAUG.G.CGA..G.....AG.AUG...G....A..U.................................UUA.....A.-...--.--
   NZ_CP086253.1     CGCC.GCGUA.A..G...G....UCUA.U.GCC..GAUC.................................GUC...U.G.G......A....G...C...A..G..G..A....A.AA...A...U.CC..A.U.C...A...C...GC.....U..G..GAA..GA...............................................UGCCACCG...AGA.UGGUUA...ACCUAUACCGCGAUG.CGCUGGAU.G......................CGGGUGA.AUGCGUG...GUG.GA.AGAAUG.G.CGU..C.....AG.AUG...G....A..U.................................AUG.....C.A...GU.CC
   NZ_CP087392.1     CGCC.GCGUA.A..G...G....UAUA.C.GCC..GAUC.................................GUC...U.G.G......A....G...C...A..G..G..A....A.AA...A...U.CC..A.U.U...A...C...GC.....A..G..GAA..GA...............................................UGCCACCG...AAA.UGGUCA...ACCUGUACCGCGAUG.CGCUGGAU.G......................CCGGUGA.AUGCGUG...GUG.GA.AGAAUG.G.CGU..C.....AG.AUG...G....A..U.................................AUG.....C.A...GU.CC
   NZ_CP087711.1     CACC.ACGUA.A..G...A....UUUA.U.GCC..GAUC.................................GAC...U.C.A......U....C...-...-..-..-..-....G.AA...A...G.UG..G.C.Cu.gAuuuU...GC.....A..A..GAA..GA...............................................UGCCACCG...AAA.UGGUCA...AUAACUAUCGCGAUG.CGCUGGAU.A......................AAGGCGA.UUGCGUG...GUG.CC.AGAGUG.G.CGU..C.....CG.AUG...C....A..G.................................AUG.....C.A...CU.CG
   NZ_CP087880.1     CUCC.GCGUA.A..G...A....UCUA.U.GCU..GACA.................................AAC...U.U.G......A....G...C...A..G..C..A....G.GG...C...G.UC..G.C.U...A...C...GC.....U..G..GAA..GA...............................................CGCCACCG...AAA.UGGUCA...ACCUGUACCGCGACG.CGCUGGAC.G......................CGGGCGA.GUGCGUG...GUG.AA.AGAGUG.G.CGU..C.....AG.AUG...A....A..C.................................CUG.....C.A...CU.CC
   NZ_CP089919.1     CGCC.ACGCA.A..A...A....UCUA.C.GCU..GAUG.................................UCC...U.G.A......C....U...G...A..G..C..A....G.AA...C...G.UU..G.C.C...A...G...CC.....U..C..GAA..GA...............................................UGCCACGG...AAA.UGGUCA...ACCUGUACCGCGAUG.CGCUGGAU.G......................CCGGUGA.AUGCGUG...GUG.GA.AGAGUG.G.CGU..C.....AG.AAU...G....A..C.................................AUG.....C.A...CA.CU
   NZ_CP089932.1     CGCC.GCGUA.A..G...C....UUUA.U.GCU..GACC.................................GCC...U.C.G......A....A...C...A..G..G..A....A.AA...G...G.UA..G.C.C...A...G...CC.....U..G..GAA..GA...............................................UGCCACGG...AAA.UGGUCA...ACCUGUAUCGUGAUG.CGCUGGAU.A......................GGGGCGA.AUGCGUG...GUG.UC.GGAAUG.U.CGU..C.....CA.CUC...A....G..U.................................CUG.....C.A...UU.CU
   NZ_CP090614.1     CACC.ACGUA.A..G...C....UAUA.C.GCU..GACA.................................UCC...U.A.A......U....G...G...A..G..-..-....-.--...-...-.--..-.-.-...-...-...--.....-..-..---..--cgcggugaguuugg...............uaucgacacagcaac...------UC...AGC.UGGUGA...ACGAAUACCGUGAUG.CUCUAGAC.C......................AUGGUGA.AGUUGUC...GUU.AA.AGAGUG.G.CGC..C.....CA.AUG...G....C..A.................................CUA.....C.A...CU.CU
   NZ_CP090968.1     CGCC.GCGCA.A..G...C....UGUA.C.GCC..GAUC.................................GCC...U.G.A......C....G...G...A..G..C..A....G.GG...G...G.UG..A.U.C...A...C...CC.....U..G..GAG..GA...............................................CGCCACCG...AGA.UGGUCA...ACCUCUAUCGCGAUG.CUCUGGAC.G......................GCGGCGG.CUGCGUC...GUG.GC.GGAGUG.G.CGC..C.....CG.AUG...A....C..C.................................AUG.....C.A...CA.GC
   NZ_CP091779.1     CCCC.GCGCA.A..A...A....UCUA.U.GCU..GACA.................................AGC...U.G.G......A....A...G...C..G..G..A....C.AA...A...G.UG..G.C.G...A...C...GC.....U..G..GAA..GA...............................................UGCGACCG...AGC.UGGUCA...AUCUUUACCGCGACG.CGCUGGAU.G......................CGGGUGA.AUGCGUA...GUG.AA.AGAGCU.G.CGC..C.....CA.AUG...A....A..U.................................AUG.....C.A...CU.CC
   NZ_CP092427.2     GUCG.GCGCC.G..A...U....C---.C.GUU..GUCC.................................CAC...A.U.C......A....A...C...U.cG..U..U....G.AA...U...U.CG..G.U.G...A...C...GU.....-..-..---..--...........................................g...CACCAGCG...GGA.UGUCCG...ACCGGU-CGGCGAGG.GGAUGCAC.A......................CUGUCCA.CGGCGUA...GG-.GC.CGCGGC.G.CGU..UgugcuCG.ACG...A....A..C.................................ACG.....G.C...CG.CG
   NZ_CP093242.1     CACC.GCGUA.A..A...A....UCUA.U.GCG..GAU-aaa......................uuaa....---...U.C.G......A....G...C...A..A..A..A....U.AU...C...G.UU..A.C.G...G...C...G-.....-..-..AAU..GA...............................................UGUCACAG...AAA.UGGUUA...ACGUUUAUCGUGAUG.CAUUAGAU.C......................GUGGUGA.UUGUGUG...GUU.GA.AGAAUG.G.CGU..C.....CA.AUG...-....-..-ggg.......................cuga...AUG.....C.U...U-.--
   NZ_CP093328.1     CGCC.ACGCA.A..G...A....UUUA.C.GCU..GAUG.................................UCC...U.G.A......C....U...G...A..G..C..A....A.AA...C...G.UA..G.C.C...A...G...CC.....U..C..GAA..GA...............................................UGCCACGG...AAA.UGGUCA...ACCUGUACCGCGAUG.CGCUGGAU.G......................CCGGUGA.AUGCGUG...GUG.GA.AGAGUG.G.CGU..C.....AG.AAU...G....A..C.................................AUG.....C.A...CA.CU
   NZ_CP093332.1     CGCC.ACGUA.A..A...A....UCUA.C.GCA..GACC.................................GUC...U.G.G......A....G...C...A..G..C..A....A.AA...G...C.UG..G.C.C...A...C...GU.....U..A..GAA..GA...............................................UGCUACCG...AAA.UGGUGA...AUCUCUAUCGUGACG.CGCUGGAU.G......................CUGGCGA.AUGUGUG...GUG.AA.AGAAUA.C.CGC..C.....CG.AUG...A....A..C.................................AUG.....C.A...UU.CC
   NZ_CP093334.1     CUCC.GCGCA.A..A...A....UCUA.C.GCC..GACA.................................AAC...U.U.G......A....G...C...A..G..G..A....C.AA...A...G.UG..U.C.G...A...C...CC.....U..G..GAA..GA...............................................UGCGACCG...AAC.UGGUUA...ACCUCUAUCGUGAUG.CGCUGGAU.G......................CCGGCGA.AUGCGUG...GUU.GA.GGAAUG.G.CGU..C.....CG.AUG...A....A..U.................................CUG.....C.A...CU.CC
   NZ_CP095443.1     CACC.ACGUA.A..A...A....UCUA.U.GCG..GAU-.................................CGC...U.U.A......A....U...C...G..A..A..A....GcGG...U...G.UU..G.U.G...A...C...UG.....C..U..GAU..GA...............................................AGUGACUG...AAA.UGGUUA...ACUUAUAUCGCGAUG.CAUUGGAU.A......................GAGGUGA.UUGUGUC...GUU.GA.AGAAUG.G.CGU..G.....AA.AUG...G....G..U.................................CUG.....C.A...CU.CU
   NZ_CP096199.1     CGCC.ACGUA.A..G...A....UUUA.C.GCA..GACG.................................UAC...U.U.A......U....G...G...A..G..-..-....-.--...C...G.UG..G.U.G...A...C...UU.....C..G..GCA..--uug.....................................auac...CGCAACUC...AAA.UGGUCA...AUGAGUACCGCGAUG.CACUCGAC.C......................GCGGUGA.AGUUGUG...GUA.AA.AGAGUG.G.CGU..C.....CA.AUG...G....C..G.................................UUG.....C.A...CU.CU
   NZ_CP096201.1     CCCC.GCGUA.A..A...A....UCUA.U.GCU..GACA.................................AGC...U.G.G......A....A...G...C..G..G..A....C.AA...A...G.UC..G.C.G...A...C...GC.....U..G..GAA..GA...............................................UGCCACUG...AGA.UGGUCA...ACCUGUAUCGCGACG.CGCUGGAC.G......................CGGGCGA.AUGCGUG...GUG.AA.AGAGUG.G.CGU..C.....CG.AUG...A....A..C.................................CUG.....C.A...CU.CC
   NZ_CP098034.1     CACC.ACGCA.A..A...U....UGUA.U.GCA..GAUG.................................UUC...U.G.A......U....C...G...A..U..A..A....A.AA...U...G.--..-.-.-...-...-...--.....-..-..---..--aaucagauau.......................cgagacagcga...-----CUC...AGU.UAGUCA...AUGAGUAUCGCGAUG.CAUUAGAU.C......................GCGGUGA.AGUGGUU...GUU.AA.AGAAUG.G.CGU..C.....CA.AUG...G....C..G.................................UUG.....C.A...CU.CU
   NZ_CP100494.1     CGCC.GCGCA.A..A...A....UCUA.C.GCU..GACA.................................AGC...U.G.G......A....G...C...A..G..G..A....A.AA...C...G.UC..G.C.G...A...C...GC.....U..G..GAA..GA...............................................CGCCACCG...AGA.UGGUUA...ACCUUUACCGCGAUG.CGCUGGAU.G......................CUGGCGA.GUGCGUG...GUA.AA.AGAGUG.G.CGU..C.....CG.AUG...A....A..C.................................AUG.....C.A...CU.CC
   NZ_CP101694.1     CGCC.CCGUA.A..A...U....UAUA.U.GCC..GAUU.................................A--...U.U.U......A....A...C...U..-..G..A....A.AU...U...G.GU..G.C.A...U...UuggGU.....U..A..GAU..AU...............................................UGCGACAG...GCU.UAGUGA...AUGAAUACCGUGAUG.CAUUAGAU.C......................GCGGUGA.GUGUGUG...GUU.AA.AGAGUG.G.CGA..C.....CA.AUG...A....A..A.................................UUG.....C.A...CU.CG
   NZ_CP104006.1     CGCC.GCGCA.A..A...A....UCUA.U.GCU..GACA.................................AGC...U.G.A......C....C...G...A..G..C..A....A.AA...U...A.UC..G.C.C...A...G...CC.....U..G..GAA..GA...............................................UGCCACGG...AAA.UGGUCA...ACCUGUAUCGUGAUG.CUCUGGAU.C......................ACGGCGA.CUGUGUG...GUG.GA.AGAGUG.G.CGU..C.....CG.AUG...A....A..U.................................CUG.....C.A...AU.CC
   NZ_CP104755.1     CACC.ACGUA.A..G...A....UCUA.U.GCU..GAUA.................................AAU...U.G.A......U....U...G...C..U..G..A....A.AA...U...A.CC..A.U.C...G...C...UG.....C..C..GAU..GA...............................................CGUGACAG...GUA.UGGUUA...ACAACUAUCGUGACG.CGUUAGAU.C......................AGGGUGA.UUGUGUC...GUA.AA.AGAAUG.G.CGU..C.....CA.AUG...A....C..G.................................UUG.....C.A...UU.CU
   NZ_CP107077.1     CGCC.GCGUC.A..G...A....UUUA.C.GCC..AGCC.................................GUC...U.G.G......A....G...C...A..G..G..A....A.AC..cA...C.CA..U.C.G...C...C...GC.....U..G..-AA..GA...............................................CGCCACCG...AGA.UGGCUA...ACGUCUACCGCGAUG.CGCUCGAC.G......................CCGGUGA.GUGCGUG...GUC.GC.UGAAUG.G.CGU..C.....CG.AUG...A....A..U.................................AUG.....C.A...CU.CC
   NZ_CP109947.1     CGCC.GCGUA.A..A...G....UCUA.C.GCC..GAUC.................................GGU...U.A.G......A....G...C...A..G..G..A....G.AA...G...G.UG..G.U.C...A...C...GU.....U..G..GGC..GA...............................................CGCCACCG...AAA.UGGUUA...AUCUAUACCGCGAUG.CACUGGAU.U......................CUGGCGA.AUGUGUG...GUG.GA.AGAAUG.G.CGU..G.....AA.AUG...A....A..U.................................AUG.....C.A...GU.CC
   NZ_FO704550.1     -ACU.GCCCG.UaaA...A....UUUA.U.GCA..GAUA.................................AGC...U.G.G......U....C...G...C..G..G..A....A.GG...U...U.UA..C.U.G...G...G...UG.....C..C..AAU..GA...............................................CGUUACUG...AGA.UGGUGA...AUUUGUACCGUGAUG.CACUGGAU.C......................AUGGUGA.AUGUGUU...GUC.GA.UGAAUG.G.CGU..C.....CA.AUG...G....G..G.................................CUG.....C.A...CU.CA
   NZ_FO704551.1     AACU.GCCCG.UaaA...A....UUUA.U.GCA..GAUA.................................AGC...U.G.G......U....C...G...C..A..G..-....-.--...-...-.--..-.-.-...-...-...--.....-..-..---..--aaggcuugcuggcu................gcuaaugaugugac...------UG...AGA.UGGUGA...ACGUGUACCGCGAUG.CACUGGAU.C......................AGGGGGA.AUGUGUU...GUU.GA.UGAAUG.G.CGU..C.....CA.AUG...G....G..G.................................AUG.....C.A...UU.CA
   NZ_LR134201.1     CGCC.GCGUA.A..A...A....UCUA.C.GCC..GACA.................................AGC...U.U.G......A....G...C...A..G..G..A....C.AA...A...C.UG..G.C.C...A...C...GC.....U..G..GAA..GA...............................................UGCCACCG...AAA.UGGUGA...AUCUGUAUCGCGAUG.CGCUGGAU.G......................CCGGCGA.AUGCGUA...GUU.AA.CGAAUG.G.CGU..C.....CG.AUG...A....A..C.................................AUG.....C.A...CU.CC
   NZ_LR134327.1     CUCC.GCCGA.A..G...G....UGUA.C.GCC..AAUC.................................GUU...U.A.A......U....U...C...A..A..G..A....A.GG...C...G.UG..A.U.U...A...C...UG.....A..A..GAA..GA...............................................UGCCACUG...AAA.UCUCCA...AUUUGUACCGUGAUG.CUUUAGAU.A......................ACGGUGA.AUGUGUU...GUG.CC.GGAAUG.G.CGC..C.....CA.AUG...G....-..-auauggcaa...........aaguggauug...GU-.....-.-...--.--
   NZ_LR134376.1     GACC.CCGCG.C..A...Ag..aUCUA.C.GCC..GAUC.................................AGC...U.GaU......C....G...C...C..G..A..A....G.GC...U...G.CG..U.C.A...-...-...--.....-..-..---..--gcccg..................................gagcu...GGUCACCG...CUC.AGGUCA...ACGACUAUCGCGACG.CCCUGGAC.A......................AGGGGGA.GCGGGUG...GUC.AA.GGAGUG.G.CGU..C.....CG.AUG...G....A..G.................................CUG.....C.A...CU.CC
   NZ_LR134494.1     CGCC.GCGCA.A..G...A....UUUA.U.GCU..GACG.................................UGC...U.G.A......C....C...G...A..A..C..A....A.AA...A...G.UC..G.C.C...A...G...CC.....U..G..GAA..GA...............................................UGCCACGG...AAA.UGGUCA...ACCUGUACCGUGAUG.CACUCGAC.C......................GCGGCGA.UUGCGUG...GUU.GA.AGAAUG.G.CGU..C.....CG.AUG...A....A..C.................................CUG.....C.A...UU.CC
   NZ_LR134531.1     CACC.ACGUA.A..A...G....UGUA.U.GCC..GAUC.................................GCU...U.G.A......U....U...G...A..G..A..A....U.AA...U...G.UU..G.U.U...A...C...CG.....C..A..GAA..GA...............................................AGUGACCG...AAA.UGGUCA...AUCUCUAUCGUGAUG.CGUUGGAU.C......................GCGGAGA.GUGUGUG...GUU.GA.CGAGUG.G.CGU..C.....CA.AUA...A....A..U.................................ACG.....C.A...CU.CA
   NZ_LR699007.1     CACC.GCGUA.A..A...A....UCUA.C.GGC..GAUA.................................AAC...U.G.A......U....U...G...C..C..G..A....A.GG...U...G.UG..GuC.G...C...U...GC.....C..G..-GU..GA...............................................UGUGACUG...AAA.UGGUCA...AUAUGUACCGUGAUG.CGAUGGAU.C......................GCGGUGA.CUGUGUG...GUG.GA.AGAGUG.G.C--..-.....--.---...-....-..-gugaaauc.............gguaaagca...--G.....C.G...CU.U-
   NZ_LS483422.1     CGCC.ACGUA.A..A...A....UUUA.U.GCA..GAU-.................................CGC...U.U.A......A....U...U...G..A..A..A...gC.GG...U...G.UU..G.U.G...U...C...UG.....C..A..AAU..GA...............................................AGUGACUG...AAA.UGGUCA...AUUCUUACCGUGAUG.CACUAGAU.G......................CGGGUAA.CUGCGUG...GUU.GA.AGAGUA.-.CCG..-.....--.-UG...A....A..A.................................UGG.....G.A...CU.CA
   NZ_LS483429.1     CACC.GCGUA.A..A...G....UUUA.U.GCA..GAUC.................................-GC..uU.A.G......U....U...U...C..A..G..A....A.GG...C...G.UG..A.U.G...A...C...UG.....A..A..GAA..CA...............................................AGUUACCG...AGA.UGGCGA...AUGAUUAUCGCGAUG.CGCUAGAU.A......................AUGGCGA.UCGCGUG...GUA.UC.UGAAUG.G.CGA..G.....AA.AUG...G....A..U.................................ACG.....G.-...--.--
   NZ_LS483443.1     CACC.ACCGA.A..A...G....UAUA.C.GCC..AAUC.................................GUU...U.A.A......U....U...C...A..A..G..A....A.GG...C...G.UG..A.U.U...A...C...GG.....A..A..GAA..GA...............................................UGCUACUG...AAA.UUUCCA...AUUUAUACCGCGAUG.CCUUGGAU.A......................AUGGCGA.AUGUGUC...GUG.CC.GGAAUG.G.CGU..G.....CG.AUG...G....A..U.................................AUG....gC.A...A-.--
   NZ_LS483458.1     UACC.CCUCG.U..A...Aa..gUUUA.U.GCA..GAUC.................................-GC..uU.A.G......U....U...U...C..A..G..A....A.GG...C...G.UG..A.U.G...A...C...UG.....A..A..GAA..CA...............................................AGUCACCG...AGA.UGGCAA...AUGAUUAUCGCGAUG.CGCUAGAU.A......................AUGGUGA.UCGAGUC...GUA.UC.AGAAUG.G.CGA..G.....AA.AUG...G....A..U.................................ACG.....-.-...--.--
   NZ_LS483470.1     CGCC.GCGUA.A..A...G....UGUA.U.GCC..GAUC.................................GCC...U.G.A......U....U...G...A..A..G..A....A.AA...A...A.CG..G.C.A...U...C...CG.....C..A..GAG..GA...............................................CGUGACCG...AAA.UGGUGA...ACGUCUAUCGCGACG.CGUUGGAU.C......................GCGGAGA.CUGUGUG...GUG.GA.CGAGUG.G.CGG..C.....CC.AUC...A....-..-auacg...................caaaac...CUG.....U.-...--.--
   NZ_LT615367.1     CACC.GCGUA.A..A...A....UUUA.U.GCC..GAUC.................................GUC...U.G.G......A....G...C...A..G..C..A....A.AA...A...G.UC..U.C.G...A...C...GC.....U..U..GAG..GA...............................................UGCGACUG...AGC.UGGUCA...ACGUCUAUCGCGAUG.CGCUGGAU.G......................CUGGCGA.AUGCGUG...GUA.GA.UGAAUG.G.CGA..C.....CA.AUG...G....A..U.................................AUG.....C.A...CU.CU
   NZ_LT897836.1     CGUU.GCGUA.A..A...A....UCUA.C.GCC..GACU.................................AUC...U.G.G......A....A...A...A..-..-..-....-.--...-...-.--..-.-.-...-...-...--.....-..-..---..--caccggaauuauuac..............cccugccgacuccac...------CG...AAA.UGGUAA...AUAUGUUCCGCGCCG.CGUUGGAU.A......................AAGGCGA.GUGUGUG...GUG.AA.AGAGUG.G.CGC..C.....GA.AGG...C....G..U.................................AUG.....A.A...UU.CU
   NZ_LT906479.1     CGCC.ACGCA.A..A...A....UCUA.C.GCU..GACG.................................UGC...U.G.A......C....C...G...A..A..C..A....G.AA...G...G.UC..G.C.C...A...G...CC.....U..G..GAA..GA...............................................UGCCACGG...AAA.UGGUCA...ACCUGUACCGUGACG.CGCUCGAC.C......................GCGGCGA.CUGCGUG...GUU.GA.AGAAUG.G.CGU..C.....CG.AUG...A....A..U.................................CUG.....C.A...UA.CC


   Structure         (((..(((((.(............(((...(((.......................................)))...).).)............................................(.((..(.(.(..............................................................................))))))..................................((((((..........................))))))..))))))....)))....((((((...(((...........................................................))).....).)...)).))


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sdhC-sdhD-sdhA-sdhB-sucA-sucB-sucC-sucD-sdhX



Position: 5207-5316, Conformation: #1







97% 90% 75% 50% Nucleotide present N N N Nucleotide identify E < 0.1 Base-pair covariation E < 0.05 Helix-level covariation 97% 90% 75%

C C C R C G Y R R R R U U A Y G C G A Y Y U R R R R Y R Y R A G Y R Y Y G R R U R R U A A Y U A Y C G Y G A Y G C R Y U G A Y G G Y G A Y G Y G U G U R G A R U G G C G Y Y Y R A U G R Y G Y R Y C 5'