sdhC-sdhD-sdhA-sdhB-sucA-sucB-sucC-sucD-sdhX



Position: 2861-2975, Conformation: #1







DMS reactivity > 1.0 0.0 0.4 0.7 G/U/No data
Position: 0 (position.label in template: 0.5')5' Position: 1 (position.label in template: 1.G) Reactivity: nanG Position: 2 (position.label in template: 2.C) Reactivity: nanC Position: 3 (position.label in template: 3.G) Reactivity: nanG Position: 4 (position.label in template: 4.C) Reactivity: nanC Position: 5 (position.label in template: 5.U) Reactivity: nanU Position: 6 (position.label in template: 6.U) Reactivity: nanU Position: 7 (position.label in template: 7.A) Reactivity: nanA Position: 8 (position.label in template: 8.U) Reactivity: nanU Position: 9 (position.label in template: 9.C) Reactivity: nanC Position: 10 (position.label in template: 10.C) Reactivity: nanC Position: 11 (position.label in template: 11.A) Reactivity: nanA Position: 12 (position.label in template: 12.G) Reactivity: nanG Position: 13 (position.label in template: 13.C) Reactivity: nanC Position: 14 (position.label in template: 14.U) Reactivity: nanU Position: 15 (position.label in template: 15.A) Reactivity: nanA Position: 16 (position.label in template: 16.A) Reactivity: nanA Position: 17 (position.label in template: 17.A) Reactivity: nanA Position: 18 (position.label in template: 18.A) Reactivity: nanA Position: 19 (position.label in template: 19.G) Reactivity: nanG Position: 20 (position.label in template: 20.A) Reactivity: nanA Position: 21 (position.label in template: 21.G) Reactivity: nanG Position: 22 (position.label in template: 22.A) Reactivity: nanA Position: 23 (position.label in template: 23.A) Reactivity: nanA Position: 24 (position.label in template: 24.A) Reactivity: nanA Position: 25 (position.label in template: 25.G) Reactivity: nanG Position: 26 (position.label in template: 26.A) Reactivity: nanA Position: 27 (position.label in template: 27.U) Reactivity: nanU Position: 28 (position.label in template: 28.C) Reactivity: nanC Position: 29 (position.label in template: 29.C) Reactivity: nanC Position: 30 (position.label in template: 30.C) Reactivity: nanC Position: 31 (position.label in template: 31.A) Reactivity: nanA Position: 32 (position.label in template: 32.G) Reactivity: nanG Position: 33 (position.label in template: 33.C) Reactivity: 0.5C Position: 34 (position.label in template: 34.C) Reactivity: 0C Position: 35 (position.label in template: 35.U) Reactivity: nanU Position: 36 (position.label in template: 36.G) Reactivity: nanG Position: 37 (position.label in template: 37.U) Reactivity: nanU Position: 38 (position.label in template: 38.C) Reactivity: 0C Position: 39 (position.label in template: 39.G) Reactivity: nanG Position: 40 (position.label in template: 40.U) Reactivity: nanU Position: 41 (position.label in template: 41.U) Reactivity: nanU Position: 42 (position.label in template: 42.C) Reactivity: 0C Position: 43 (position.label in template: 43.C) Reactivity: 0C Position: 44 (position.label in template: 44.G) Reactivity: nanG Position: 45 (position.label in template: 45.C) Reactivity: 0C Position: 46 (position.label in template: 46.C) Reactivity: 0C Position: 47 (position.label in template: 47.G) Reactivity: nanG Position: 48 (position.label in template: 48.C) Reactivity: 0C Position: 49 (position.label in template: 49.U) Reactivity: nanU Position: 50 (position.label in template: 50.C) Reactivity: 0C Position: 51 (position.label in template: 51.C) Reactivity: 0C Position: 52 (position.label in template: 52.U) Reactivity: nanU Position: 53 (position.label in template: 53.G) Reactivity: nanG Position: 54 (position.label in template: 54.C) Reactivity: 1C Position: 55 (position.label in template: 55.C) Reactivity: 1C Position: 56 (position.label in template: 56.G) Reactivity: nanG Position: 57 (position.label in template: 57.U) Reactivity: nanU Position: 58 (position.label in template: 58.G) Reactivity: nanG Position: 59 (position.label in template: 59.A) Reactivity: 1A Position: 60 (position.label in template: 60.A) Reactivity: 0.5A Position: 61 (position.label in template: 61.G) Reactivity: nanG Position: 62 (position.label in template: 62.G) Reactivity: nanG Position: 63 (position.label in template: 63.U) Reactivity: nanU Position: 64 (position.label in template: 64.G) Reactivity: nanG Position: 65 (position.label in template: 65.U) Reactivity: nanU Position: 66 (position.label in template: 66.G) Reactivity: nanG Position: 67 (position.label in template: 67.U) Reactivity: nanU Position: 68 (position.label in template: 68.G) Reactivity: nanG Position: 69 (position.label in template: 69.C) Reactivity: 0C Position: 70 (position.label in template: 70.G) Reactivity: nanG Position: 71 (position.label in template: 71.G) Reactivity: nanG Position: 72 (position.label in template: 72.U) Reactivity: nanU Position: 73 (position.label in template: 73.U) Reactivity: nanU Position: 74 (position.label in template: 74.C) Reactivity: 1C Position: 75 (position.label in template: 75.C) Reactivity: 0C Position: 76 (position.label in template: 76.G) Reactivity: nanG Position: 77 (position.label in template: 77.A) Reactivity: 0A Position: 78 (position.label in template: 78.C) Reactivity: 0C Position: 79 (position.label in template: 79.G) Reactivity: nanG Position: 80 (position.label in template: 80.G) Reactivity: nanG Position: 81 (position.label in template: 81.U) Reactivity: nanU Position: 82 (position.label in template: 82.C) Reactivity: 0C Position: 83 (position.label in template: 83.U) Reactivity: nanU Position: 84 (position.label in template: 84.G) Reactivity: nanG Position: 85 (position.label in template: 85.A) Reactivity: 1A Position: 86 (position.label in template: 86.A) Reactivity: 0.5A Position: 87 (position.label in template: 87.C) Reactivity: 0.5C Position: 88 (position.label in template: 88.A) Reactivity: 1A Position: 89 (position.label in template: 89.U) Reactivity: nanU Position: 90 (position.label in template: 90.G) Reactivity: nanG Position: 91 (position.label in template: 91.A) Reactivity: 0.5A Position: 92 (position.label in template: 92.A) Reactivity: 1A Position: 93 (position.label in template: 93.C) Reactivity: 0C Position: 94 (position.label in template: 94.G) Reactivity: nanG Position: 95 (position.label in template: 95.G) Reactivity: nanG Position: 96 (position.label in template: 96.C) Reactivity: 0.5C Position: 97 (position.label in template: 97.A) Reactivity: 0A Position: 98 (position.label in template: 98.A) Reactivity: 0A Position: 99 (position.label in template: 99.G) Reactivity: nanG Position: 100 (position.label in template: 100.A) Reactivity: 1A Position: 101 (position.label in template: 101.A) Reactivity: 1A Position: 102 (position.label in template: 102.U) Reactivity: nanU Position: 103 (position.label in template: 103.G) Reactivity: nanG Position: 104 (position.label in template: 104.G) Reactivity: nanG Position: 105 (position.label in template: 105.U) Reactivity: nanU Position: 106 (position.label in template: 106.C) Reactivity: 0C Position: 107 (position.label in template: 107.U) Reactivity: nanU Position: 108 (position.label in template: 108.G) Reactivity: nanG Position: 109 (position.label in template: 109.G) Reactivity: nanG Position: 110 (position.label in template: 110.C) Reactivity: 0C Position: 111 (position.label in template: 111.C) Reactivity: 0C Position: 112 (position.label in template: 112.U) Reactivity: nanU Position: 113 (position.label in template: 113.G) Reactivity: nanG Position: 114 (position.label in template: 114.U) Reactivity: nanU Position: 115 (position.label in template: 115.A) Reactivity: 1A Position: 116 (position.label in template: 116.U) Reactivity: nanU Position: 117 (position.label in template: 117.U) Reactivity: nanU Position: 118 (position.label in template: 118.A) Reactivity: 0.5A Position: 119 (position.label in template: 119.C) Reactivity: 0.5C Position: 120 (position.label in template: 120.C) Reactivity: 0C Position: 121 (position.label in template: 121.C) Reactivity: 0C Position: 122 (position.label in template: 122.C) Reactivity: 0C Position: 123 (position.label in template: 123.G) Reactivity: nanG Position: 124 (position.label in template: 124.A) Reactivity: nanA Position: 125 (position.label in template: 125.U) Reactivity: nanU Position: 126 (position.label in template: 126.U) Reactivity: nanU Position: 127 (position.label in template: 127.U) Reactivity: nanU Position: 128 (position.label in template: 128.C) Reactivity: nanC Position: 129 (position.label in template: 129.G) Reactivity: nanG Position: 130 (position.label in template: 130.G) Reactivity: nanG Position: 131 (position.label in template: 131.C) Reactivity: nanC Position: 132 (position.label in template: 132.A) Reactivity: nanA Position: 133 (position.label in template: 133.C) Reactivity: nanC Position: 134 (position.label in template: 134.U) Reactivity: nanU Position: 135 (position.label in template: 135.C) Reactivity: nanC Position: 136 (position.label in template: 136.A) Reactivity: nanA Position: 137 (position.label in template: 137.A) Reactivity: nanA Position: 138 (position.label in template: 138.C) Reactivity: nanC Position: 139 (position.label in template: 139.C) Reactivity: nanC Position: 140 (position.label in template: 140.A) Reactivity: nanA Position: 141 (position.label in template: 141.G) Reactivity: nanG Position: 142 (position.label in template: 142.C) Reactivity: nanC Position: 143 (position.label in template: 143.C) Reactivity: nanC Position: 144 (position.label in template: 144.G) Reactivity: nanG Position: 145 (position.label in template: 145.G) Reactivity: nanG Position: 146 (position.label in template: 146.G) Reactivity: nanG Position: 147 (position.label in template: 147.C) Reactivity: nanC Position: 148 (position.label in template: 148.A) Reactivity: nanA Position: 149 (position.label in template: 149.A) Reactivity: nanA Position: 150 (position.label in template: 150.G) Reactivity: nanG Position: 151 (position.label in template: 151.A) Reactivity: nanA Position: 152 (position.label in template: 152.A) Reactivity: nanA Position: 153 (position.label in template: 153.G) Reactivity: nanG Position: 154 (position.label in template: 154.A) Reactivity: nanA Position: 155 (position.label in template: 155.U) Reactivity: nanU Position: 156 (position.label in template: 156.3')3' 10 20 30 50 100 150


sdhC-sdhD-sdhA-sdhB-sucA-sucB-sucC-sucD-sdhX



Position: 2861-2975, Conformation: #1







Retained alignments:


   NC_003910.7       UC..U..G...A.U.U..C..................U.U...U...U..A...A...A...A...G...A...A...A...C...A...GA..U...U...C..AA.G...C..U...U.A.U..C..U....U..UC..CGU..CGC....UCGUGUCGUGA......AGG.UGUUUGUGGCU..C..U.G.A..UGG.C...U..U.G..AACAUGAAUGGUAAAAAUGGCUUAG.CUUGU....AU....U....AC..GCCUUU.A.U.....................................................C...A.G...A.A...U..U...G..A....A.-..-.A....G.C..C..G..A..-..U
   NC_004347.2       AC..U..U...A.U.C..A..................A.G...U...U..A...A...A...A...G...A...A...A...A...A...GA..U...C...C..AA.C...C..U...U.A.G..U..G....U..UC..CGU..CGC....UCUUGCCGUGA......AGG.UGUUUGCGGUA..G..C.G.A..UGG.U...C..U.G..AACAUGAACGGUAAAAAUGGUCUGG.CUUGU....AU....U....AC..C-----.-.-cc.............................................agu...-...-.-...-.-...C..U...C..U....A.C..C.U....U.C..A.aA..G..G..U
   NC_004578.1       --..U..G...G.C.G..C..................U.G...G...U..C...A...A...A...G...A...A...C...A...G...GA..C...G...A..AG.G...C..U...U.U.U..C..G....U..AC..CGU..CGU....UCGUGCCGUGA......AGG.CGUGUGCGGCU..C..C.G.A..UGG.C...A..U.G..AACAUCAAUGGCAAGAACGGCCUGG.CGUGC....AU....C....AC..GCCGCU.G.U.....................................................C...U.G...C.G...G..U...U..G....U.C..-.-....G.C..C..A..A..GaaC
   NC_004603.1       GC..A..Uu.gA.U.U..C..................U.G...C...U..A...A...A...A...G...A...G...C...A...A...GA..U...C...C..AA.G...C..A...U.C.G..C..A....U..UC..CGU..CGU....UCUUGUCGUGA......AGG.UGUGUGUGGUU..C..U.G.A..UGG.U...U..U.G..AACAUGAACGGCAAAAAUGGUCUGG.CAUGU....AU....C....AC..UCCAUU.A.U.....................................................C...G.G...C.-...-..U...C..U....A.C..A.A....G.G..U..-..G..A..C
   NC_004757.1       GC..U..G...A.U.A..C..................G.C...A...U..C...A...A...A...A...C...C...A...U...C...GA..U...G...A..CA.-...-..G...U.C.U..C..A....G..CC..UGA..GGCg..cUCCUGCCGGGA......AGG.UGUCUGCGGUU..C..C.G.A..CGC.C...A..U.G..AAUAUCAACGGUCGAAAUGGACUUG.CCUGC....AU....C....AC..GCCGCU.-.-ggccg........................................gccug...-...-.-...-.-...-..-...-..C....G.U..G.A....A.C..-..-..-..-..-
   NC_005126.1       GU..U..A...A.U.C..C..................A.G...C...U..U...A...A...A...G...A...A...C...A...G...GA..C...C...C..AA.C...A..C...U.C.U..C..U....U..UC..CGU..CGU....UCUUGCCGUGA......AGG.UGUUUGUGGUU..C..U.G.A..CGG.C...C..U.C..AACAUGAAUGGUAAAAAUGGUCUGG.CUUGU....AU....U....AC..GCCUGU.U.U.....................................................C...G.G...C.U...U..U..gC..G....G.C..G.U....G.G..U..A..G..-..C
   NC_005966.1       UU..U..A...C.U.U..G..................C.A...U...U..G...A...A...A...G...U...U...C...A...G...GA..U...G...A..AA.C...A..U...U.G.A..C..A....U..UC..CGU..CGU....UCAUGCCGUGA......AGG.AAUCUGUGGUU..C..U.G.A..UGG.U...G..U.G..AACAUUAACGGUAAAAAUGGUUUGG.CUUGU....CU....-....--..------.-.-guggaauuugaacg......................auuuaccagaaaaa...-...-.-...-.-...-..-...-..-....A.-..-.-....-.-..-..-..-..-..-
   NC_006512.1       AC..U..G...A.U.C..A..................A.A...U...U..G...A...A...A...G...A...A...C...A...A...GA..U...C...-..CA.U...C.gC...U.G.G..C..A....U..UC..CGC..CGC....UCGUGCCGUGA......AGG.UGUUUGUGGCU..C..C.G.A..UGG.U...A..U.G..AAUAUUAAUGGUAAAAAUGGUUUGG.CUUGU....AU....C....AC..UCA---.-.-uuugucuucuuuga.....................aaucagacaaaauug...-...U.G...-.-...-..-...-..-....-.-..-.-....-.-..-..-..-..-..-
   NC_006513.1       GC..U..G...G.U.U..C..................G.C...C...U..G...A...A...G...U...C...G...A...A...G...GA..C...G...A..CA.C...C..U...U.G.U..C..G....U..UC..CGC..CGC....UCGUGCCGCGA......AGG.UGUAUGCGGUU..C..G.G.A..CGC.G...A..U.G..AACAUCAACGGCAAGAACGGCCUGG.CCUGC....CU....G....AC..--CGAC.A.U.....................................................C...G.A...C.G...G..C...C..U....G.CcgC.A....G.C..C..G..A..U..C
   NC_007481.1       AC..U..U...A.U.U..C..................U.U...U...U..A...A...A...A...G...A...A...C...A...A...GA..U...C...C..AA.C...A..U...U.A.U..C..U....U..UC..CGU..CGU....UCAUGCCGUGA......AGG.UGUGUGUGGAU..C..U.G.A..UGG.U...G..U.U..AACAUGAAUGGUAAAAAUGGUUUGG.CAUGU....AU....C....AC..U-----.-.-cc.............................................uuu...-...-.-...-.-...A..U...C..U....A.C..-.-....G.C..U..-..-..G..C
   NC_007484.1       GC..-..-...-.-.-..-uggagga..aauccgg..-.G...C...G..C...A...G...G...A...U...G...A...A...A...G-..-...-...-..--.-...U..C...U.U.G..C..C....U..UC..CGC..CGC....UCCUGCGGAGA......GGG.AGUAUGUGGCU..C..C.G.A..UGG.A...A..U.G..AAUAUCAAUGGCCGGAAUGGUUUAG.CCUGU....AU....U....AC..GCCAC-.-.-.....................................................U...G.G...C.G...A..G...C..C....U.C..A.A....G.-..-..G..A..A..-
   NC_007511.1       AC..U..G...G.U.C..A..................A.A...C...U..G...A...A...G...G...C...C...G...U...G...GA..C...G...A..GA.C...G..C...U.G.U..C..G....U..UC..CGC..CGU....UCGUGCCGUGA......AGG.CGUGUGCGGUU..C..G.G.A..CGC.G...A..U.G..AACAUCAACGGCAAGAACGGUCUCG.CGUGU....CU....C....AC..------.-.-gaacc.......................................ugaacg...-...-.-...-.-...-..-...-..-....A.C..C.U....G.C..C..G..-..-..C
   NC_007626.1       UG..A..A...G.-.-..A..................U.C...A...A..G...A...A...C...G...A...G...A...U...C...GA..C...U...C..GA.C...C..U...U.G.A..C..C....U..UC..CGC..CGU....UCGUGCCGCGA......AGG.CAUCUGCGGGU..C..G.U.G..CGC.C...A..U.G..AACAUCGACGGCACCAAUACCCUGG.CCUGC....CU....C....AA..GCCCAU.C.G.....................................................A...G.G...A.C...A..U...C..Aa..gG.-..-.-....-.-..-..-..-..-..-
   NC_007645.1       U-..-..G...G.G.A..C..................U.G...A...U..G...A...A...A...G...A...A...A...A...A...GA..C...C...C..GA.C...C..C...U.G.G..C..G....U..AC..CGU..CGC....UCAUGCCGUGA......GGG.CGUGUGCGGUU..C..G.G.A..CGG.C...A..U.G..AAUAUGAACGGCAAGAACGGCUUGG.CCUGU....AU....C....AC..CCC---.-.-ucuuucucagguggu....................gaagaacaacaagcu...-...G.G...U.A...U..U...-..-....-.-..-.-....-.-..-..-..-..-..-
   NC_007712.1       CU..U..A...A.U.C..C..................A.G...C...U..U...A...A...A...G...A...G...C...A...G...GA..U...C...C..AA.G...C..C...U.G.U..C..G....U..UC..CGC..CGC....UCCUGCCGUGA......GGG.GGUUUGUGGCU..C..A.G.A..CGG.C...G..U.C..AAUAUGAACGGCAAAAACGGUUUGG.CGUGC....AU....A....AC..GCCGCU.G.U.....................................................C...G.A...U.G...U..U...G..C....G.C..A.A...gG.G..C..G..A..C..C
   NC_007908.1       GU..U..Uu.gA.C.U..A..................A.A...C...U..C...A...A...A...G...C...A...A...C...G...GA..C...C...C..CA.C...C..A...U.U.U..C..U....U..AC..CGG..CGU....UCAUGCCGCGA......AGG.CAUUUGCGGCU..C..G.G.A..CGC.G...A..U.G..AACAUCAACGGCAAGAACGGUUUGG.CUU--....--....-....--..------.-.-gccuggucaa.............................uauguugacuu...-...-.-...-.-...-..-...-..-....-.-..-.U....G.C..C..C..G..A..C
   NC_007952.1       AC..U..G...C.U.C..A..................A.G...C...U..G...A...A...G...G...C...A...A...U...G...GA..C...G...A..GA.C...G..U...U.G.U..C..G....U..UC..CGC..CGC....UCGUGCCGUGA......AGG.CGUGUGCGGUU..C..G.G.A..CGC.A...A..U.G..AACAUCAACGGCAAGAACGGUCUGG.CGUGC....CU....G....A-..------.-.-cgaacc......................................ugaacg...-...-.-...-.-...-..-...-..-....A.C..C.U....G.C..C..G..C..A..A
   NC_007954.1       AC..U..U...A.U.A..A..................A.G...C...U..U...A...A...A...G...A...A...C...A...A...GA..C...U...C..AA.C...C..U...U.A.G..C..G....U..UC..CGU..CGC....UCAUGCCGUGA......AGG.UGUGUGUGGAU..C..A.G.A..CGG.C...G..U.U..AACAUGAACGGUAAAAAUGGCUUGG.CGUGU....AU....C....AC..G-----.-.-cc.............................................acu...-...-.-...-.-...U..U...C..A....A.C..C.U...uA.A..A..G..G..G..U
   NC_007963.1       UG..A..G...A.U.G..A..................U.C...A...A..G...C...A...G...C...A...G...G...A...C...AG..U...U...C..CA.U...G..-...-.-.G..C..G....U..AU..CGU..CGC....AGCUGCCGUGA......AGG.GGUUUGCGGUU..C..C.G.A..UGG.C...A..U.G..AACAUGAACGGCAAGAACGGUCUGG.CAUGC....AU....C....AC..G-----.-.-ccgcuguccga...........................gguggucaagga...-...-.-...-.-...-..-...C..A....A.C..A.A....G.C..U..G..-..-..-
   NC_007964.1       CC..U..G...A.U.C..U..................G.G...A...U..C...A...A...G...G...A...C...C...A...C...AU..C...G...A..CC.C...G..A...C.G.C..U..Ga.ccU..UC..CGC..CGC....UCCUGCCGCGA......AGG.CGUGUGCGGCU..C..C.U.G..CGC.C...A..U.G..AACAUCGAUGGCCAGAAUACGCUGG.CCUGC....AC....C....AC..GUCGAU.GcA.....................................................C...G.A...-.-...C..U...U..G....G.C..C.G....G.-..C..G..G..C..G
   NC_008027.1       --..-..G...G.C.G..C..................U.G...A...U..C...A...A...G...G...A...G...C...A...G...GA..C...G...A..GG.G...C..U...U.C.U..C..G....U..AC..CGU..CGC....UCCUGCCGUGA......AGG.CGUGUGCGGUU..C..C.G.A..CGG.C...A..U.G..AACAUCAACGGCAAGAACGGCCUGG.CGUGC....AU....C....AC..GCCGCU.G.U.....................................................C...C.G...C.U...G..U...C..-....G.U..A.A....-.-..A..A..G..G..U
   NC_008048.1       GC..U..C...A.U.C..A..................A.G...A...U..G...A...A...GagcG...A...G...C...A...G...GA..U...U...C..GA.C...G..C...U.G.A..C..C....U..UC..CGC..CGU....UCGUGCCGCGA......AGG.CAUCUGCGGCAgcU..G.U.U..CGA.U...G..-.-..AACAUGAACGGCAAGAACGGCCUCG.CCUGC....AC....G....AC..CGCGA-.-.-ucgaggau..................................cugaaggg...C...G.A...C.A...U..C...A..C....G.A..Uc-....-.-..-..-..-..-..-
   NC_008260.1       CC..U..U...G.C.U..U..................U.G...G...U..A...A...A...A...G...A...G...C...A...G...GA..U...G...A..GU.C...C..A...U.G.U..C..U....U..AC..CGU..CGC....UCCUGUCGUGA......AGG.GGUAUGCGGUU..C..C.G.A..CGG.C...A..U.G..AACAUGAACGGCAAGAACGGUUUGG.CGUGU....AU....C....AC..UCC---.-.-gcugucucagguggc...................gccagguguucuggaa...-...G.G...U.A...-..-...-..-....-.-..-.-....-.-..-..-..-..-..-
   NC_008345.1       GU..U..A...A.U.U..A..................A.A...C...U..G...A...A...A...G...A...A...C...A...A...GA..C...U...C..AA.C...G..C...U.U.G..C..G....U..UC..CGU..CGU....UCAUGCCGUGA......AGG.UGUGUGUGGUU..C..U.G.A..CGG.U...G..U.U..AACAUGAAUGGUAAAAACGGAUUAG.CGUGU....AU....U....AC..G-----.-.-cc.............................................auu...-...-.-...-.A...U..C...U..A....C.C..U.U....U.A..A..A..G..G..U
   NC_008700.1       GC..U..G...C.U.G..A..................A.G...C...U..G...A...A...A...G...A...A...A...U...C...GA..U...C...C..GA.C...A..C...U.G.U..C..G....U..UC..CGC..CGU....UCAUGCCGUGA......AGG.UGUGUGUGGUU..C..U.G.A..CGG.U...A..U.G..AACAUGAAUGGUAAGAACGGCCUGG.CUUGU....AU....C....AC..G-----.-.-cc..............................................ua...-...-.-...-.U...C..U...C..U....A.C..C.U....U.C..A.aG..G..G..C
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   NZ_LR884459.1     GC..U..A...U.U.G..C..................G.U...C...U..A...A...A...A...A...A...G...C...A...A...GA..U...G...A..AA.G...C..A...U.C.A..C..U....U..UC..CGC..CGC....UCAUGCCGUGA......AGG.UAUUUGUGGUU..C..G.G.A..CGG.C...G..U.G..AACAUCAACGGUAAAAACGGCCUAG.CGUGU....CU....U....AU..U--AAC.A.U.....................................................G...A.A...C.A...-..-...-..-....C.C..C.U....G.C..C..A..G..-..-
   NZ_LS398110.1     CC..U..G...A.U.C..U..................G.G...A...U..C...A...A...-...G...A...A...C...C...A...CA..UcgaC...C..CG.U...C..G...C.U.C..A..C...cU..UC..CGC..CGC....UCCUGCCGUGA......AGG.CGUCUGCGGCU..C..C.U.G..CGC.C...A..U.G..AACAUCGACGGCCAGAACACGCUGG.CCUGC....AC....C....CG..CUCGAU.GcA.....................................................C...G.A...C.G...U..C...A..A....G.G..A.A....G.G..C..-..G..C..G
   NZ_LS483250.1     GC..U..U...A.U.C..U..................U.G...U...U..A...A...A...A...G...A...A...A...A...A...GA..U...G...C..AA.C...A..U...U.A.A..C..U....U..UC..CGU..CGU....UCUUGCCGCGA......GGG.UGUAUGUGGUU..C..U.G.A..UGG.U...G..U.U..AACAUGAAUGGCAAAAAUGGCCUCG.CGUGU....AU....C....AC..ACCUUU.A.U.....................................................C...U.G...A.U...C..U...U..A....A.U..A.U....G.-..-..-..A..A..C
   NZ_LS483369.1     --..-..-...-.U.G..C..................G.C...C...U..G...A...A...A...G...C...G...C...A...A...GA..U...G...A..UA.C...A..U...U.G.U..C..U....U..UC..CGC..CGU....UCUUGUCGCGA......AGG.UAUUUGCGGUU..C..U.G.A..CGG.U...A..U.G..AACAUCAAUGGCAAAAACGGCUUGG.C--GU....GU....U....UG..ACCGAU.C.U..................................................gcgC...G.G...C.U...U..G...A..A....A.C..-.A....G.C..C..G..G..U..U
   NZ_LS483422.1     GU..U..G...A.U.U..C..................U.G...A...U..U...A...A...A...G...A...A...C...A...G...GA..U...C...C..AA.C...G..C...U.U.U..C..A....U..UU..CGU..CGU....UCUUGCCGAGA......AGG.CGUAUGUGGCU..C..U.G.A..UGG.U...U..U.G..AACAUGAACGGGAAAAACGGACUGG.CUUGU....AU....C....AC..GCCAUU.A.U.....................................................C...C.G...C.G...U..U...G..A...uG.C..A.A....G.G..U..G..G..G..-
   NZ_LS999205.1     GC..U..G...G.C.C..C..................U.G...A...U..C...A...A...A...G...A...G...C...A...G...GA..C...G...A..AG.G...U..U...U.U.U..C..C....U..AC..CGU..CGU....UCCUGCCGUGA......AGG.CGUUUGCGGUU..C..C.G.A..UGG.C...A..U.G..AACAUCAACGGCAAGAACGGUCUGG.CGUGC....AU....C....AC..G-----.-.-cc.............................................gcu...-...-.-...-.-...-..-...-..-....G.U..C.U....G.C..C..GugG..U..C
   NZ_LT615367.1     GU..U..G...A.U.U..C..................A.G...C...U..C...A...A...A...G...A...G...C...A...G...GA..U...C...C..AA.C...G..C...U.G.G..C..G....U..UC..CGG..CGU....UCGUGUCGUGA......AGG.CGUGUGCGGUU..C..U.G.A..UGG.U...U..U.G..AACAUGAACGGUAAAAACGGUCUGG.CUUGC....AU....C....AC..ACCGGU.U.U.....................................................C...-.-...C.A...C..U...U..U....G.C..-.-....G.C..A..A.cG..G..U
   NZ_LT853882.1     GC..U..U...A.U.C..A..................A.G...A...U..C...AagaA...C...G...A...G...A...U...C...GA..C...C...C..GA.C...A..U...U.G.G..C..A....U..UC..CGU..CGU....UCGUGCCGCGA......AGG.UAUCUGCGGUU..C.gU.G.C.gCGA.U...G..-.-..AACAUCGACGGCACCAAUACGCUGG.CCUGC....AC....C....AA..GGCGAU.-.-.....................................................C...G.C...U.G...C..U...U..-....G.C..G.GaaagG.C..C..G..-..-..-
   NZ_LT855380.1     --..U..G...G.C.C..C..................U.G...G...U..C...A...A...A...G...A...A...C...A...G...GA..U...C...A..AG.G...U..U...U.U.U..C..G....U..AU..CGC..CGC....UCGUGCCGUGA......AGG.CGUCUGCGGUU..C..C.G.A..CGG.C...A..U.G..AACAUGAACGGCAAGAACGGCCUGG.CCUGC....AU....C....AC..G-----.-.-ccagug.....................................ucugcug...-...-.-...-.-...-..-...-..U....G.G..U.U....G.C..CaaG..G..G..C
   NZ_LT906434.1     UC..U..U...G.U.U..A..................A.G...U...U..A...A...A...A...G...C...C...A...U...G...GA..U...G...A..CA.G...C..U...U.G.U..C..U....U..UC..CGC..CGC....UCUUGCCGGGA......AGG.UAUUUGCGGUU..C..A.G.A..CGG.C...A..U.G..AAUAUCAACGGUAAAAACGGCUUGG.CUUGU....UU....G....AC..CGAUAU.U.C.....................................................G...U.A...G.U...U..U...G..A....A.A..C.A....G.C..C..G..A..U..U
   NZ_LT906435.1     AC..U..G...G.U.G..A..................A.G...C...U..C...A...A...G...A...A...G...AucgA...C...GA..A...G...G..CA.U...C..G...-.-.-..C..U....U..UC..CGC..CGC....UCGUGCCGCGA......AGG.CGUGUGCGGUU..C..G.G.A..CGC.C...A..U.G..AACAUCAACGGCAAGAAUGGUCUGG.CCUGC....CU....G....AC..C-----.-.-aaca.........................................ugaac...-...-.-...-.-...-..-...-..G....A.U..C.U....G.C..C..G..A..A..C
   NZ_LT906469.1     --..U..G...A.U.C..-ua............cg..U.C...A...A..G...A...G...C...U...A...C...C...U...G...GA..C...G...G..CA.C...G..C...U.G.A..C..C....U..UC..CGC..CGG....UCCUGCGCGCA......CGG.GGUGUGCGGCU..C..G.G.A..CGG.C...G..U.G..CGGGUCAACGGCAACAACAAGCUGG.CCU--....--....-....--..------.-.-gcaagcugcugaugcg.................cgacauccugcccaaaa...-...-.-...-.-...-..-...-..-....-.-..-.A....G.C..C..G..G..G..C
   NZ_LT906479.1     GU..U..A...A.U.G..C..................A.G...C...U..G...A...A...A...G...A...A...A...A...A...GA..U...C...C..GU.C...C..C...U.G.U..C..G....U..UC..CGU..CGC....UCAUGCCGUGA......AGG.CGUGUGCGGCU..C..C.G.A..CGG.C...C..U.C..AAUAUGAACGGCAAAAACGGCCUGG.CCUGC....AU....C....AC..CCCGAU.C.U.....................................................C...U.U...C.G...C..U...G..C....G.C..A.A...aG.C..C..-..G..G..C
   NZ_LT906482.1     GCcaU..C...A.U.G..A..................A.G...C...U..C...A...A...A...G...C...C...A...A...A...GA..U...G...A..CA.G...U..C...U.C.U..C..C....U..UC..CGC..CGC....UCCUGCCGCGA......AGG.CAUCUGCGGCU..C..G.G.A..CGG.C...A..U.G..AACAUCAACGGCAAAAACGGCCUCG.CCUGC....CU....C....A-..-CCGAU.A.U.....................................................C...C.G...C.A...G..C...C..-....U.C..A.A....G.C..-..A..G..C..C
   NZ_LT907988.1     -C..G..C...A.U.C..A..................A.G...-...-..-...A...A...C...G...A...C...G...U...G...GA..C...G...A..CA.G...C..C...U.G.G..C..C....A..UC..CGC..CGU....UCCUGCCGCGA......AGG.CGUGUGCGGGU..C..G.G.A..CGC.C...A..U.G..AACAUCAACGGGAAGAACGGGCUUG.CCUGU....AC....C....AC..U-----.-.-.................................................a...-...-.-...-.-...-..-...-..-....A.C..C.Ug..cG.C..G..A..G..C..U
   NZ_OU015521.1     GC..U..U...U.G.G..A..................A.G...C...A..A...U...C...A...G...G...G...A...A...A...AA..C...A...C..CC.A...G..A...U.A.U..CggC....U..UA..CGU..CGU....UCGUGUGGUGA......AGG.AGUUUGUGGGU..C..G.G.A..UGG.A...A..U.G..AAUAUUAAUGGUAAAAAUGGUUUGG.CUUGU....GU....G....AC..GC--AA.U.U.....................................................A...A.A...A.A...C..U...U..U....A.C..C.A....GaU..C..A..A..G..U
   NZ_OU343031.1     UC..U..A...A.U.U..A..................A.G...C...U..G...A...A...A...U...C...A...A...U...C...GA..U...G...A..GA.C...C..A...U.C.U..C..U....U..UU..CGG..CGC....UCAUGCCGCGA......AGG.CGUAUGCGGUU..C..A.G.A..UGC.A...A..U.G..AAUAUCAAUGGAAAAAACGGACUAG.CGUGC....UU....A....AC..A-----.-.-aaucu........................................aaaug...-...-.-...-.-...-..-...-..-....-.-..-.A....G.U..U..G..C..C..A
   NZ_OU594967.1     AU..U..G...C.U.G..A..................A.G...A...U..A...A...A...A...G...A...G...C...A...A...GA..U...C...C..UU.C...A..U...U.G.G..C..U....U..UU..AGA..CGU....UCAUGUCGCGA......AGG.GGUAUGUGGUU..C..U.G.A..UGG.U...G..U.G..AAUAUGAACGGCCAAAAUGGUCUUG.CAUGC....AU....U....AC..GCCGCU.G.U.....................................................C...A.G...A.U...C..U...A..C....U.C..A.A....U.C..A..G..G..G..U
   NZ_OW485601.1     GC..U..G...A.U.C..A..................A.G...A...U..C...AagaA...C...G...A...G...G...U...C...GA..C...C...C..GA.C...C..C...U.G.A..C..C....U..UC..CGC..CGC....UCCUGCCGCGA......AGG.CAUCUGCGGCU..C..C.U.G..CGC.G...G..U.G..AACAUCGACGGGCUGAACACGCUCG.CCUGC....CU....C....AA..GCCGAU.C.G.....................................................C...G.G...A.C...G..-...-..U....G.C..A.G...gG.C..G..A..G..-..-


   Structure         ((..(................................).)...).............................................................((.(......(...(.(.(..(..(........(..(((..(((.....(((.............)))..))).)))).......).).)..))).....)..).).....................((((((.(..((....................(((...........................................................)...).)........................).).........).)..)..)..)..)..)


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sdhC-sdhD-sdhA-sdhB-sucA-sucB-sucC-sucD-sdhX



Position: 2861-2975, Conformation: #1







97% 90% 75% 50% Nucleotide present N N N Nucleotide identify E < 0.1 Base-pair covariation E < 0.05 Helix-level covariation 97% 90% 75%

Y U R Y R U A A R G A R A R G A Y R Y U C U U Y C G Y C G Y U C U G C C G Y G A A G G Y G U U G Y G G Y U C G A Y G R U G A A Y A U A A Y G G Y A A R A A Y G G Y Y U R G C U G Y R U A C 5'