rpsF-priB-rpsR-rplI



Position: 767-891, Conformation: #1







DMS reactivity > 1.0 0.0 0.4 0.7 G/U/No data
Position: 0 (position.label in template: 0.5')5' Position: 1 (position.label in template: 1.A) Reactivity: nanA Position: 2 (position.label in template: 2.C) Reactivity: nanC Position: 3 (position.label in template: 3.G) Reactivity: nanG Position: 4 (position.label in template: 4.G) Reactivity: nanG Position: 5 (position.label in template: 5.A) Reactivity: nanA Position: 6 (position.label in template: 6.C) Reactivity: nanC Position: 7 (position.label in template: 7.U) Reactivity: nanU Position: 8 (position.label in template: 8.G) Reactivity: nanG Position: 9 (position.label in template: 9.A) Reactivity: nanA Position: 10 (position.label in template: 10.G) Reactivity: nanG Position: 11 (position.label in template: 11.C) Reactivity: nanC Position: 12 (position.label in template: 12.A) Reactivity: nanA Position: 13 (position.label in template: 13.A) Reactivity: nanA Position: 14 (position.label in template: 14.A) Reactivity: nanA Position: 15 (position.label in template: 15.A) Reactivity: nanA Position: 16 (position.label in template: 16.U) Reactivity: nanU Position: 17 (position.label in template: 17.G) Reactivity: nanG Position: 18 (position.label in template: 18.G) Reactivity: nanG Position: 19 (position.label in template: 19.U) Reactivity: nanU Position: 20 (position.label in template: 20.U) Reactivity: nanU Position: 21 (position.label in template: 21.U) Reactivity: nanU Position: 22 (position.label in template: 22.U) Reactivity: nanU Position: 23 (position.label in template: 23.G) Reactivity: nanG Position: 24 (position.label in template: 24.C) Reactivity: nanC Position: 25 (position.label in template: 25.A) Reactivity: nanA Position: 26 (position.label in template: 26.U) Reactivity: nanU Position: 27 (position.label in template: 27.G) Reactivity: nanG Position: 28 (position.label in template: 28.C) Reactivity: nanC Position: 29 (position.label in template: 29.C) Reactivity: nanC Position: 30 (position.label in template: 30.G) Reactivity: nanG Position: 31 (position.label in template: 31.A) Reactivity: nanA Position: 32 (position.label in template: 32.G) Reactivity: nanG Position: 33 (position.label in template: 33.C) Reactivity: nanC Position: 34 (position.label in template: 34.A) Reactivity: 0A Position: 35 (position.label in template: 35.G) Reactivity: nanG Position: 36 (position.label in template: 36.A) Reactivity: 0.5A Position: 37 (position.label in template: 37.U) Reactivity: nanU Position: 38 (position.label in template: 38.U) Reactivity: nanU Position: 39 (position.label in template: 39.G) Reactivity: nanG Position: 40 (position.label in template: 40.A) Reactivity: 0.5A Position: 41 (position.label in template: 41.A) Reactivity: 0.5A Position: 42 (position.label in template: 42.U) Reactivity: nanU Position: 43 (position.label in template: 43.U) Reactivity: nanU Position: 44 (position.label in template: 44.G) Reactivity: nanG Position: 45 (position.label in template: 45.A) Reactivity: 0A Position: 46 (position.label in template: 46.U) Reactivity: nanU Position: 47 (position.label in template: 47.A) Reactivity: 1A Position: 48 (position.label in template: 48.G) Reactivity: nanG Position: 49 (position.label in template: 49.A) Reactivity: 0A Position: 50 (position.label in template: 50.U) Reactivity: nanU Position: 51 (position.label in template: 51.U) Reactivity: nanU Position: 52 (position.label in template: 52.C) Reactivity: 0.5C Position: 53 (position.label in template: 53.U) Reactivity: nanU Position: 54 (position.label in template: 54.G) Reactivity: nanG Position: 55 (position.label in template: 55.G) Reactivity: nanG Position: 56 (position.label in template: 56.A) Reactivity: 0.5A Position: 57 (position.label in template: 57.G) Reactivity: nanG Position: 58 (position.label in template: 58.A) Reactivity: 0A Position: 59 (position.label in template: 59.C) Reactivity: 0C Position: 60 (position.label in template: 60.U) Reactivity: nanU Position: 61 (position.label in template: 61.A) Reactivity: 1A Position: 62 (position.label in template: 62.G) Reactivity: nanG Position: 63 (position.label in template: 63.C) Reactivity: 0C Position: 64 (position.label in template: 64.C) Reactivity: 0C Position: 65 (position.label in template: 65.A) Reactivity: 1A Position: 66 (position.label in template: 66.U) Reactivity: nanU Position: 67 (position.label in template: 67.A) Reactivity: 0.5A Position: 68 (position.label in template: 68.U) Reactivity: nanU Position: 69 (position.label in template: 69.G) Reactivity: nanG Position: 70 (position.label in template: 70.G) Reactivity: nanG Position: 71 (position.label in template: 71.C) Reactivity: 0C Position: 72 (position.label in template: 72.A) Reactivity: 1A Position: 73 (position.label in template: 73.C) Reactivity: 0.5C Position: 74 (position.label in template: 74.G) Reactivity: nanG Position: 75 (position.label in template: 75.U) Reactivity: nanU Position: 76 (position.label in template: 76.U) Reactivity: nanU Position: 77 (position.label in template: 77.A) Reactivity: 0.5A Position: 78 (position.label in template: 78.U) Reactivity: nanU Position: 79 (position.label in template: 79.U) Reactivity: nanU Position: 80 (position.label in template: 80.U) Reactivity: nanU Position: 81 (position.label in template: 81.C) Reactivity: 0C Position: 82 (position.label in template: 82.C) Reactivity: 0C Position: 83 (position.label in template: 83.G) Reactivity: nanG Position: 84 (position.label in template: 84.U) Reactivity: nanU Position: 85 (position.label in template: 85.C) Reactivity: 0.5C Position: 86 (position.label in template: 86.G) Reactivity: nanG Position: 87 (position.label in template: 87.U) Reactivity: nanU Position: 88 (position.label in template: 88.C) Reactivity: 0C Position: 89 (position.label in template: 89.G) Reactivity: nanG Position: 90 (position.label in template: 90.C) Reactivity: 0.5C Position: 91 (position.label in template: 91.A) Reactivity: 0.5A Position: 92 (position.label in template: 92.A) Reactivity: 0.5A Position: 93 (position.label in template: 93.G) Reactivity: nanG Position: 94 (position.label in template: 94.U) Reactivity: nanU Position: 95 (position.label in template: 95.U) Reactivity: nanU Position: 96 (position.label in template: 96.C) Reactivity: 0C Position: 97 (position.label in template: 97.U) Reactivity: nanU Position: 98 (position.label in template: 98.G) Reactivity: nanG Position: 99 (position.label in template: 99.C) Reactivity: 0C Position: 100 (position.label in template: 100.C) Reactivity: 0C Position: 101 (position.label in template: 101.G) Reactivity: nanG Position: 102 (position.label in template: 102.U) Reactivity: nanU Position: 103 (position.label in template: 103.U) Reactivity: nanU Position: 104 (position.label in template: 104.U) Reactivity: nanU Position: 105 (position.label in template: 105.C) Reactivity: 0C Position: 106 (position.label in template: 106.A) Reactivity: 0A Position: 107 (position.label in template: 107.C) Reactivity: 1C Position: 108 (position.label in template: 108.C) Reactivity: 0.5C Position: 109 (position.label in template: 109.G) Reactivity: nanG Position: 110 (position.label in template: 110.C) Reactivity: 0C Position: 111 (position.label in template: 111.G) Reactivity: nanG Position: 112 (position.label in template: 112.G) Reactivity: nanG Position: 113 (position.label in template: 113.A) Reactivity: 0A Position: 114 (position.label in template: 114.A) Reactivity: 0A Position: 115 (position.label in template: 115.G) Reactivity: nanG Position: 116 (position.label in template: 116.G) Reactivity: nanG Position: 117 (position.label in template: 117.C) Reactivity: 1C Position: 118 (position.label in template: 118.G) Reactivity: nanG Position: 119 (position.label in template: 119.U) Reactivity: nanU Position: 120 (position.label in template: 120.U) Reactivity: nanU Position: 121 (position.label in template: 121.C) Reactivity: 0.5C Position: 122 (position.label in template: 122.A) Reactivity: 0.5A Position: 123 (position.label in template: 123.A) Reactivity: 0.5A Position: 124 (position.label in template: 124.G) Reactivity: nanG Position: 125 (position.label in template: 125.A) Reactivity: 0.5A Position: 126 (position.label in template: 126.G) Reactivity: nanG Position: 127 (position.label in template: 127.A) Reactivity: 0A Position: 128 (position.label in template: 128.U) Reactivity: nanU Position: 129 (position.label in template: 129.C) Reactivity: 0.5C Position: 130 (position.label in template: 130.G) Reactivity: nanG Position: 131 (position.label in template: 131.A) Reactivity: 0A Position: 132 (position.label in template: 132.C) Reactivity: 0C Position: 133 (position.label in template: 133.U) Reactivity: nanU Position: 134 (position.label in template: 134.A) Reactivity: nanA Position: 135 (position.label in template: 135.U) Reactivity: nanU Position: 136 (position.label in template: 136.A) Reactivity: nanA Position: 137 (position.label in template: 137.A) Reactivity: nanA Position: 138 (position.label in template: 138.A) Reactivity: nanA Position: 139 (position.label in template: 139.G) Reactivity: nanG Position: 140 (position.label in template: 140.A) Reactivity: nanA Position: 141 (position.label in template: 141.U) Reactivity: nanU Position: 142 (position.label in template: 142.A) Reactivity: nanA Position: 143 (position.label in template: 143.U) Reactivity: nanU Position: 144 (position.label in template: 144.C) Reactivity: nanC Position: 145 (position.label in template: 145.G) Reactivity: nanG Position: 146 (position.label in template: 146.C) Reactivity: nanC Position: 147 (position.label in template: 147.U) Reactivity: nanU Position: 148 (position.label in template: 148.A) Reactivity: nanA Position: 149 (position.label in template: 149.C) Reactivity: nanC Position: 150 (position.label in template: 150.G) Reactivity: nanG Position: 151 (position.label in template: 151.C) Reactivity: nanC Position: 152 (position.label in template: 152.U) Reactivity: nanU Position: 153 (position.label in template: 153.G) Reactivity: nanG Position: 154 (position.label in template: 154.A) Reactivity: nanA Position: 155 (position.label in template: 155.A) Reactivity: nanA Position: 156 (position.label in template: 156.A) Reactivity: nanA Position: 157 (position.label in template: 157.A) Reactivity: nanA Position: 158 (position.label in template: 158.A) Reactivity: nanA Position: 159 (position.label in template: 159.C) Reactivity: nanC Position: 160 (position.label in template: 160.U) Reactivity: nanU Position: 161 (position.label in template: 161.A) Reactivity: nanA Position: 162 (position.label in template: 162.C) Reactivity: nanC Position: 163 (position.label in template: 163.A) Reactivity: nanA Position: 164 (position.label in template: 164.U) Reactivity: nanU Position: 165 (position.label in template: 165.C) Reactivity: nanC Position: 166 (position.label in template: 166.3')3' 10 20 30 50 100 150


rpsF-priB-rpsR-rplI



Position: 767-891, Conformation: #1







Retained alignments:


   NC_002977.6       -..A.GCCU..U....GCU.....GGC...C...G...AU.CCA.......A..A...AG..A..C.A..........U....UA..UcgccgaucA....G.A..U....U....C.....AG.GA..GUU..-CACC....GAU.............................................................................................................GGUUC...GUC...A...AUUCAA...AC...GUAGA..AG.G...UACUGUCGCUUCACC.................................GCGG..A.AGACGUCAAGGAAAUCGAUUACAAGGACUUGGACACCCUGC..GGGAAUA
   NC_003910.7       U..A.AUUA..G....GCU.....UUA...U...U...UA.CUA.......A..C...AA..A..A.U..........A....GU..U........A....A.C..U....A....A.....AU.AA..AAC..CAU--....---.............................................auuggag.................................................aacuccauGUCUC...GUU...U...UUUUAG...AC...GUCGU..AA.G...UUUUGCCGCUUCACA.................................GCGG..A.AGGCGCAACAUCUAUCGAUUAUAAAGAUAUUGCAACUUUAA..AAAAUUA
   NC_004193.1       A..A.ACUU..U....-CA.....AAU...C...U...A-.-AU.......U..U...UU..A..A.G..........U....GA..A........G....G.A..G....U....G.....U-.--..---..-----....-A-uu........................................aauauggcagcucg.........................................ucgcggacgugc-----...---...-...---AAA...AC...GUCGU..AA.G...GUGUGUUACUUCACA.................................GCGA..A.CGGAAUUACGCACAUCGAUUACAAAGAUGUUGAUCUAUUAA..GACGUUU
   NC_004556.1       U..G.AUAA..C....G-A.....UGG...C...G...GC.AAC.......G..C...CG..A..A.-..........-....-G..C........U....G.C..U....U....A.....AG.GA..GUC..CC--C...uCAU.............................................................................................................GUCUA...AGU...U...CUUCCG...AC...GCCGC..AA.A...UUCUGCAAAUUCACU.................................GCCG..A.GGGCAUUAAAGAGAUCGACUAUAAAGAUCUCAAUACCCUAC..GCCAGUA
   NC_004578.1       U..U.AGCG..A....UAA.....CGC...U...G...--.-AC.......G..A...GU..A..A.U..........C....CA..C........G....G.A..CcuuuU....G.....AG.GA..GCC..AAUUA....CAU.............................................................................................................GGCAC...GUU...U...CUUCCG...UC...GUCGU..AA.A...UUCUGCCGCUUCACC.................................GCUG..A.AGACGUCAAAGAGAUCGAUUACAAAGAUCUCAACACUCUGA..AAGCCUA
   NC_004603.1       U..A.GUGU..U....ACA.....UGC...C...G...AC.AAUa....uuA..C...UC..A..A.A..........U....UU..A........A....G.A..U....-....C.....AG.GA..GAU..-AGCC....CAU.............................................................................................................GGCUC...GUU...U...CUUCCG...UC...GUCGU..AA.A...UUCUGCCGUUUCACU.................................GCAG..A.AGGCGUACAAGAGAUUGAUUACAAAGACGUAGCAACUCUUA..AAAACUA
   NC_005126.1       U..G.GUUC..U....UCA.....UGC...C...G...AG.CAG.......A..U...UG..A..A.U..........U....GA..U........A....G.A..U....U....C.....UG.GA..GAC..UAGCC...aAAU.............................................................................................................GGCAC...GUU...A...UUUCCG...UC...GUCGC..AA.G...UUCUGCCGUUUCACA.................................GCGG..A.AGGCGUUCAAGAGAUUGAUUAUAAAGACAUCGCUACGCUGA..AAAACUA
   NC_005861.2       G..AuUUAU..G....CUA.....CAA...A...G...A-.-AA.......A..C...CA..A..A.A..........U....AU..A........A....-.-..-....-....-.....UU.CU..GAC..UACUC...uGAU.............................................................................................................GCC-C...GCU...C...UAAAA-...--...AGCGU..AA.G...CGUUGCCCUUUUACU.................................GCGG..C.AGGAAUUAGAGAAAUUGAUUACAAAGAUAUAGAUACUUUGA..CAAAAUU
   NC_005966.1       U..G.AAGA..A....GCA.....CAA...Ca.aA...UU.CAA.......G..A...UU..C..U.G..........C....UG..A........A....G.C..U....U....A.....AG.GA..GAA..CA-UC....AAU.............................................................................................................GGCAC...GUU...U...UUACCG...UC...GUCGC..AA.G...UUCUGCCGCUUUACA.................................GCUG..A.GAAUGUUGCGUACAUCGACUACAAAGAUAUCGACACUUUAA..AACAGUA
   NC_006300.1       U..A.GUUU..U....ACA.....UGC...C...G...AG.CAU.......A..U...CG..A..A.Ua........uU....UA..U........A....G.A..U....U....-.....AG.GA..GAC..UAGCC...aAAU.............................................................................................................GGCAC...GUU...A...UUUCCG...UC...GUCGC..AA.G...UUCUGCCGUUUUACA.................................GCGG..A.AAACGUAGUUGAAAUCGAUUAUAAAGAUAUCGCUACAUUGA..AGAACUA
   NC_006513.1       A..U.GGCU..U....UCA.....AGC...C...C...--.-AA.......G..U...CG..A..A.G..........U....UC..A........A....G.A..A....A....A.....AG.GA.uGAU..CGCGG....CAA.............................................................................................................CCGCG...GUC...U...GUUCAA...GC...GUCGC..AA.G...UUCUGCCGCUUCACC.................................GCGG..A.GAAGAUCGAAGAAGUCGACUACAAGGAUGUGGAUAUCCUGA..AGGACUU
   NC_007204.1       U..G.AUAG..Cg..aCGA.....CAA...C...G...AC.CAC.......A..G...UG..A..A.G..........A....CU..A........A....-.U..U....A....A.....AG.GA..GAA..UA-CU....CAU.............................................................................................................GGCAC...GUU...U...CUAUCG...CC...GUCGC..AA.A...UUCUGCCGUUUCACU.................................GCUG..A.AGGCAUCACUCACAUCGAUUAUAAAGAUGUUGAAUUGCUAA..AACAGUA
   NC_007292.1       G..A.UUGC..A....UUU.....AUA...U...G...UA.UUU.......U..U...UA..U..A.A..........U....GA..A........C....U.A..U....G....G.....AG.UC..AAU..UA---....--U.............................................................................................................GGCAC...GUU...U...UGUACG...UC...AUCGC..AA.A...UUUUGUAGGUUUACA.................................GCGG..A.AAAAUGCAUUAAUAUUGAUUAUAAAGAUCUUGUCACAAUAC..AGCAUUC
   NC_007484.1       U..G.GUUG..U....GUU.....GGC...C...A...GG.UUG.......A..A...AG..A..A.A..........U....UA..-........A....U.U..C....A....U.....UG.AA..GGU..-GGAA...uCAU.............................................................................................................GGCAC...GUU...U...UUUUCG...GC...GCAGA..AA.A...UUUUGCCGCUUUACA.................................GCCG..A.GGGAGUGAAAGAGAUUGACUACAAAGAUCUAGCUACCCUUA..AAGACUA
   NC_007645.1       U..G.ACGA..C....GAA.....-GA...C...A...G-.--C.......A..A...CG..A..C.G..........A....AU..A........A....G.U..U....A....U.....AG.GA..GGC..UAACC....-AU.............................................................................................................GGCUC...GUU...U...CUUUCG...CA...GAAGA..AA.G...UUCUGCCGUUUUACU.................................GCCG..A.AGGCGUAAAAGAGAUCGAUUACAAAGAUGUAGAAGUACUGA..AAGGCUA
   NC_007712.1       U..A.GUUC..U....GCA.....UAC...C...G...AG.CAG.......A..U...UG..A..U.U..........U....GA..U........A....G.A..U....U....C.....UG.GA..GAC..UAGCC...cUAU.............................................................................................................GGCAC...GUU...A...UUUCCG...UC...GUCGC..AA.G...UUCUGCCGUUUCACC.................................ACGG..A.AGGCGUUGUUGAGAUCGACUAUAAAGACAUCGCUACGCUGA..AAAACUA
   NC_007912.1       G..A.AGCC..G....--A.....UGA...U...G..aAU.CAU.......C..U...GA..A..G.A..........C....GA..A........A....-.G..C....-....G.....AG.GA..GGC..AUAAU....CAU.............................................................................................................GGCAC...GUU...U...UUUCCG...AC...GUCGU..AA.G...UUCUGUCGUUUCACU.................................GCCG..A.AGGCGUGAAAAGCAUCGACUAUAAAGAUUUAGAUACUCUGA..AAGCAUA
   NC_007947.1       -..-.-UAU..U....GCA.....UAU..aC...A...AA.CAUuggaaagA..A...UU..A..U.C..........U....GA..A........A....G.G..U....U....U.....UC.AU..CAU..GGCAC....---.............................................................................................................GUGAC...AUG...U...UCA--A...AC...GCCGC..CG.C...UACUGCCGCUUCUCG.................................GCAG..A.GGGCAUCAAGCAAGUGGAUUACAAGGAUGUUGAUCUGCUGA..AGGACUU
   NC_007951.1       G..G.ACUG..A....ACA.....UGC...C...C..cGC.CCG.......A..C...UG..G..U.A..........A....GA..A........A....U.U..C....G....A.....-C.AA..GCG..UCGUC....---.............................................agc.........................................................aacaGAAUC...CGC...U...CUUCAA...GC...GCAAG..AA.G...UUCUGCCGUUUCACG.................................GCCG..C.UGGCGUCGAUCACAUCGACUACAAGGACCUCGAAACGCUGA..AGGACUU
   NC_007954.1       U..G.GUCU..U....GCA.....UGC...U...G...AA.AAU.......G..U...CG..A..A.U..........U....GA..A........A....-.A..C....U....U.....AG.GA..GAC..UGUCA...aCAU.............................................................................................................GGCAC...GUU...A...UUUCCG...UC...GUCGC..AA.G...UUCUGCCGUUUCACC.................................UCUG..A.AGGUGUUGCAGAAAUUGAUUACAAAGAUAUCGUUACUUUAA..AGAACUA
   NC_007963.1       A..A.GCCC..C....CGC.....UGA...C...G...-C.CGA.......A..G...CC..A..A.C..........U....GA..U........Cc..gA.U..C....U....C.....UG.GA..GGA..UAACC....CAU.............................................................................................................GGCAC...GCU...U...UUUCCG...UC...GCCGU..AA.G...UUCUGCCGCUUCACC.................................GCCG..A.AGGCGUGAAGUACAUCGAUUACAAGGACAUCGAUACACUCA..AGUCCUA
   NC_008260.1       -..-.-GCU..-....GCA.....AAG...C...C...--.-UU.......A..A...CU..A..A.G..........G....AU..U........C....G.A..C....-....-.....AG.GA..GAU..UAUCC....AAU.............................................................................................................GGCCC...GUU...U...UUAUCG...CC...GCCGC..AA.G...UUCUGCCGCUUUACU.................................GCGG..A.AGGUGUUGAGUACAUCGAUUACAAAGAUCUCGACACCCUGA..AAGCCUA
   NC_008340.1       C..G.GAUC..A....CCC.....GGC...U...C...GA.UAC......cA..C...CG..A..A.G..........A....--..A........U....C.U..C....A....U.....CA.GG..AGU..AAUCG...aCAU.............................................................................................................GGCAC...GCU...U...UUUCCG...CC...GCCGC..AA.G...UACUGCCGUUUCACC.................................GCCG..A.GGGUGUGAAGGAGAUCGACUACAAGGAUCUCAACACCCUGC..GCAACUA
   NC_008344.1       G..A.GAUU..U....UCA.....AGA...A...A...CA.AAG.......A..U...GC..A..A.A..........G....AA..C........A....A.G..A....-....-.....-U.GA..---..-AGGA....---.............................................ccggaug.................................................gcaaaucgGCCAC...---...U...AUUCAA...AC...GCAAA..AA.A...UUCUGUCGGUUUACA.................................GCUG..A.GGGAAUUAAAAAAAUAGACUAUAAAGAUGUUGAUCUGCUGA..AAGAUUU
   NC_008345.1       U..A.GUCU..U....GCA.....UGC...U...G...AA.AAU.......G..U...CG..A..A.U..........U....GA..A........A....-.A..C....U....U.....AG.GA..GAC..UGUCA...aAAU.............................................................................................................GGCAC...GUU...A...UUUCCG...UC...GUCGC..AA.G...UUCUGCCGCUUCACC.................................UCUG..A.AGGUGUUGUCGAGAUUGAUUACAAAGAUAUCGUUACUUUAA..AGAACUA
   NC_008610.1       -..-.----..A....AAG.....GGG...A...G...AU.CAU.......A..A...UG..G..C.C..........A....AG..C........A....-.A..G....U....A.....AA.AA..GAA..AA---....---cg........................................cag................................................................---AC...CUC...A...AAUUAA...AA...UUAAC..AC.U...UUUUGCCGUUUUACG.................................GCAG..C.AGGUAUUACAAGAAUUGAUUAUAAAGAUGUUGAUACACUGC..UUAAAAA
   NC_008686.1       U..G.ACCG..C....GAC.....---...-...G...AC.CGG.......A..A...UU..A..A.G..........G....GA..A........A....G.G..A....A....C.....CA.GG..AUC..-AUGG...cCAA.............................................................................................................CAAAC...CCU...U...CUUCCG...CC...GCCGG..AA.A...GUCUGCCCCUUCUCG.................................GGCG..A.CAACGCCCCCGCCAUCGACUACAAGGACACGCGCCUGCUUC..AGCGUUA
   NC_008700.1       U..G.GUAC..U....GCA.....UGC...C...G...AA.AAU.......G..U...CG..A..A.U..........U....GA..A........A....-.U..C....U....U.....AG.GA..GAC..-UGUC...aCAU.............................................................................................................GGCAC...GUU...A...UUUCCG...UC...GUCGC..AA.G...UUCUGCCGUUUCACC.................................GCUG..A.AGGUGUUGCAGAGAUCGAUUACAAAGAUAUUGCUACUCUGA..AGAACUA
   NC_008709.1       U..C.GUGU..U....GCA.....UGC...U...C...AG.UAC.......A..U...AG..A..A.C..........A....AA..-........-....-.U..U....U....G.....AG.GA..AAU..-A--C....CAU.............................................................................................................GGCUC...GUU...A...CUUCCG...CC...GUCGU..AA.G...UUCUGUCGUUUCACC.................................GCUG..A.AGGUGUUAGCGAAAUUGAUUACAAAGACGUUGUUACGUUAA..AAAAUUA
   NC_009092.1       U..G.GUAU..U....ACA.....CGC...U...G...AA.AAU.......G..U...CG..A..A.U..........U....GA..A........A....-.A..C....U....U.....AG.GA..GAC..UGUCA...aAAU.............................................................................................................GGCAC...GUU...A...UUUCCG...UC...GUCGC..AA.G...UUCUGCCGUUUCACU.................................GCAG..A.AGGCGUUACUGAGAUCGAUUACAAAGAUAUCGCUACUCUAA..AGAACUA
   NC_009446.1       G..A.AGCC..U....CAA.....UGA..uG...A...UG.CAA.......G..A...AG..U..U.A..........A....GA..A........A....U.A..A....G....G.....A-.--..---..--GCAc.auAAU.............................................................................................................GGCAC...---...-...-----G...UC...GUAAA..AG.A...AUUUGUCGUUUUACC.................................GCUG..A.AGGCGUUAAAGAAAUCGAUUAUAAAGAUUUGGAAACGUUAA..AAGCCUA
   NC_009831.1       U..G.GUAU..U....ACA.....CGC...U...G...AA.AAU.......G..U...CG..A..A.U..........U....GA..A........A....-.A..C....U....U.....AG.GA..GAC..-UGUC...aCAU.............................................................................................................GGCAC...GUU...A...UUUCCG...UC...GUCGC..AA.G...UUCUGCCGUUUCACU.................................GCAG..A.AGGUGUUACAGAGAUCGAUUACAAAGAUAUCGUAACUUUGA..AGAACUA
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   NZ_LR884459.1     -..-.----..-....---.....-AC...C...G...CU.CUG.......A..U...G-..-..-.-..........-....--..A........U....G.A..C....A....A.....UG.AU..GAC..--GAC....---.............................................aacgaugacacugacgauagcagug.............acgacuaauuaaaggagaaaucucauGGCAC...GUU...U...UUAUCG...CC...GUCGU..AA.G...UUCUGCCGUUUCACC.................................GCAG..A.AGGUAUUACCCACAUCGAUUAUAAAGAUGUAGAAUUAUUAA..AGCAGUA
   NZ_LR890047.1     U..A.UUUU..U....AUA.....CGC...U...A...AA.AAG.......A..U...UG..A..A.U..........U....UA..U........A....G.G..U....U....U.....UG.GA..GAC..UAGCU...aUAU.............................................................................................................GGCAC...GUU...A...UUUUCG...UC...GUCGC..AA.G...UUCUGCCGUUUUACC.................................GCGG..A.GGAUGUUCAAGAGAUUGAUUAUAAGGAUAUCUCUACUCUAA..GAAACUA
   NZ_LR990739.1     C..A.CCGA..U....AC-.....CGA...C...G...GC.GAC.......A..A...CG..C..C.G..........A....AG..C........C....G.C..U....U....A.....AG.GA..GCG..CUGUC....-AU.............................................................................................................GUCCA...AGU...U...CUUCCG...UC...GUCGC..AA.G...UUCUGCAAAUUCACC.................................GCCG..A.GGGCGUCAAGGAGAUCGAUUACAAGGAUCUCAACACCCUGC..GUCAGUA
   NZ_LS483250.1     U..A.G---..-....--U.....UAU...C...C...AA.UUA.......U..U...UG..A..G.-..........-....--..A........A....G.A..U...uU....U.....AG.GA..GAU..UUUAA...uUAU.............................................................................................................GGCAC...GUU...U...UUUCCG...UC...GUCGU..AA.A...UUCUGUCGUUUCACU.................................UCUG..A.AGGUGUUACGGAGAUUGAUUAUAAAGAUAUCGCUACGUUAA..AAAACUA
   NZ_LS483369.1     C..G.UUCC..C....UUA.....UGC...C...G...AU.GCU.......C..A...GA..A..U.A..........C....AA..A........A....U.A..U....U....A.....AA.GA..AUA..UA---....---.............................................aagguuaaacg.........................................acaauggcucgu----C...AAU...C...AUUCAA...AC...GUAGA..AA.A...UUCUGCCGUUUUACG.................................GCUG..A.AAAAAUCCAAGAAGUCGAUUACAAACAAGUUGAUUUGCUGA..AAGACUU
   NZ_LS483422.1     U..A.GUCC..U....UCA.....UGC...C...G...AG.CAG.......A..U...UG..A..U.U..........U....GA..U........A....G.A..U....U....C.....UG.GA..GAC..UAGCC...uUAU.............................................................................................................GGCAC...GUU...A...UUUCCG...UC...GUCGC..AA.G...UUCUGCCGUUUCACA.................................GCGG..A.AGGCGUUCAAGAGAUCGACUAUAAAGAUAUCGCAACGCUGA..AAAACUA
   NZ_LS483429.1     U..A.GUUU..U....ACA.....UGC...C...G...AG.CAA.......A..U...CG..A..A.U..........U....UA..U........A....G.A..U....U....-.....AG.GA..GAC..UAGCC...aAAU.............................................................................................................GGCAC...GUU...A...UUUCCG...UC...GUCGU..AA.G...UUCUGCCGUUUCACA.................................GCGG..A.AAAUGUUGUUGAAAUCGAUUAUAAAGAUAUCGCUACAUUAA..AGAACUA
   NZ_LS483443.1     U..A.GUCU..U....ACA.....UGC...C...G...AG.CAA.......A..U...CG..A..A.U..........U....UA..U........A....G.A..U....U....-.....AG.GA..GAC..CAGCC...aAAU.............................................................................................................GGCAC...GUU...A...UUUCCG...UC...GUCGU..AA.G...UUCUGCCGUUUCACA.................................GCGG..A.AAAUGUUGUUGAAAUCGAUUACAAAGAUAUCGCUACAUUAA..AGAACUA
   NZ_LS483470.1     U..G.GUGU..U....ACA.....UGC...C...G...AG.CAG.......A..U...UG..A..U.U..........U....GA..U........A....G.A..U....U....C.....UG.GA..GAG..UAGCC...aUAU.............................................................................................................GGCAC...GUU...A...UUUCCG...UC...GUCGC..AA.G...UUCUGCCGUUUUACC.................................GCGG..A.AGGCGUUCAAGAGAUCGAUUAUAAAGAUAUCGCAACGCUGA..AAAACUA
   NZ_LS483476.1     C..G.AAGG..A...cUUA.....AGU...A...A...AA.GAU.......A..-...--..-..-.A..........A....GG..G........A....G.G..U....U....A.....UU.UC..UAU..-----....---.............................................ggcaggugga...........................................cgcagaggugg-----...---...-...ACGUAA...AC...GCCGU..AA.A...GUGUGUUUUUUCACA.................................UCAA..A.CGGUAUUACACACAUCGACUAUAAAGAUAUUGAUUUAUUAAagAAAUUUG
   NZ_LT594522.1     U..A.GUAU..U....UAU.....UAC..aU...G...AG.CAU.......A..U...UG..A..U.U..........U....AA..U........A....A.A..U....U....A.....UG.GA..GAA..UAGCU...aUAU.............................................................................................................GACAC...GUU...A...UUUACG...UA...GACGU..AA.G...UUCUGCCGUUUUACA.................................GCUG..A.GGAAAUUGUUGAGAUAGAUUACAAAGACAUAUCUAUGCUGA..AAAAUUA
   NZ_LT608328.1     A..A.AGAU..G....GCU.....AAA...C...A...AU.CAG.......A..A...A-..-..-.-..........U....CA..G........A....U.-..-....-....-.....AU.UU..GAC..UCCCG....UAU.............................................................................................................CGGUU...GAU...G...UUAAAA...--...AGAAA..AA.G...UAUUGUCGUUUCAAA.................................AAGA..A.CGGAAUCAAGUACAUCGAUUACAAGGAUCCCGAAUUUUUGA..AAAAGUU
   NZ_LT615367.1     U..G.GUGC..U....GCA.....UGC...C...G...AG.CAG.......A..U...UG..A..A.U..........U....GA..U........U....G.A..U....U....C.....UG.GA..GAC..UAGCC...aAAU.............................................................................................................GGCAC...GUU...A...UUUCCG...UC...GUCGC..AA.G...UUCUGCCGUUUCACC.................................GCGG..A.AGGCGUUCAAGAGAUUGACUAUAAAGACAUCGCAACGCUGA..AAAACUA
   NZ_LT897836.1     U..A.GUUU..U....ACA.....UGC...C...G...AG.CAA.......A..U...UG..A..U.U..........U....GA..U........A....G.A..G....U....C.....CG.GA..GAC..UAACU...aUAU.............................................................................................................GACGC...AUU...A...UUUCCG...UC...GCCGC..AA.G...UUUUGUCGUUUUACU.................................GCAG..A.AGGCGUUGUUGAGAUCGACUACAAAGACAUUGCUACACUUA..AAAAUUA
   NZ_LT906434.1     C..U.GUGU..Ug..cGCA.....UAC...A...A...--.AAC.......A..U...UA..A..A.-..........G....AA..U........A....U.A..A....A....G.....GU.UA..AAC..--GAC....AAU.............................................................................................................GGCUC...GUC...AaucAUUCAA...AC...GUAGA..AA.A...UUCUGCCGUUUCACG.................................GCUG..A.AAAAAUCCAAGAAGUUGAUUACAAACAAGUAGACUUGUUGA..AAGACUU
   NZ_LT906442.1     -..A.AUGA..A....GAA.....AGA...A...A...AA.GAA.......A..C...UA..G..A.G..........C....UG..C........-....U.U..A....A....G.....GG.GA..GUG..--UAC....AAU.............................................................................................................GUCUG...AAU...A...UUUUCG...UA...GAAAA..AA.A...AUGUGUCGUUUCAGU.................................GCUG..A.AGGUGGUAAUGAAAUAGAUUAUAAAGAUAUUAAUUUACUUA..AAAAUUA
   NZ_LT906448.1     U..A.GUAU..U....ACA.....UGC...C...G...AG.CAA.......A..U...CG..A..A.U..........U....UA..U........A....G.A..U....U....-.....AG.GA..GAC..UAGCC...aAAU.............................................................................................................GGCAC...GUU...A...UUUCCG...UC...GUCGU..AA.G...UUCUGCCGUUUCACA.................................GCGG..A.AAAUGUAGUAGAAAUCGAUUAUAAAGAUGUAGCUACAUUAA..AGAACUA
   NZ_LT906460.1     A..C.ACAU..A....AAA.....UAA...U...A...UU.CAA.......A..G...GA..G..G.U..........A....G-..U........U....A.A..C....U....A.....UG.GC..---..-----....---agguggaccaa......................gaagaggcggac................................................................-----...---...-...--GUCG...UC...GUAAA..AA.A...GUAUGCUAUUUCACA.................................GCAA..A.UGGUAUUACACAUAUCGACUAUAAAGACACUGAAUUAUUGA..AACGUUU
   NZ_LT906462.1     G..C.CGUU..U....UAA....uAGU...U...G...AU.AAA.......A..A...CG..U..A.U..........A....UA..U........A....A.A..C....A....U.....UU.A-..---..-----....---.............................................acaagaagggaggaacacauucau...............ggcagguggaccaagaagagguggu-----...---...-...-CGUCG...UC...GUAAA..AA.A...GUUUGUUAUUUCACA.................................GCAA..A.CGGAAUUACACAUAUCGACUACAAAGAUACUGAUUUACUUA..AAAAGUU
   NZ_LT906463.1     U..A.GUAU..U....ACA.....CGC...C...G...AG.CAA.......A..U...CG..A..A.U..........U....UA..U........A....G.A..U....U....-.....AG.GA..GAC..UAGCC...aAAU.............................................................................................................GGCAC...GUU...A...UUUCCG...UC...GUCGU..AA.G...UUCUGCCGUUUCACU.................................GCGG..A.AAAUGUUGUUGAAAUCGAUUACAAAGAUAUCGCUACAUUAA..AGAACUA
   NZ_LT906464.1     A..A.AAUA..U....UUA.....-AC...A...G...--.--G.......A..A...GG..G..A.G..........G....CA..C........A....C.A..U....C....A.....UG.GC..---..-----....---agguggaccaa.......................gaagagguggu................................................................-----...---...-...-CGUCG...UC...GUAAA..AA.A...GUUUGCUACUUCACA.................................GCAA..A.UGGUAUUACACAUAUCGACUACAAAGACACUGAAUUAUUAA..AACGUUU
   NZ_OU594967.1     U..G.GUUC..U....GCA.....UGC...C...C...AA.CAC.......A..U...AG..A..A.U..........U....GU..U........A....G.C..U....U....-.....-G.AG..GAU..AAACU....UAU.............................................................................................................GGCAC...GUU...U...UUUCCG...UC...GUCGU..AA.A...UUCUGCCGUUUUUCG.................................GCUG..A.AGGCGUAGUUGAAAUCGAUUAUAAAGAUAUCACUACUUUAA..AAAAUUA
   NZ_OU907312.1     U..A.GUAC..U....GCA.....UGC...U...G...AA.UCC.......G..U...UC..A..A.U..........U....GA..C........U....U.A..U....U....C.....UG.GA..GAG..GAAUU...cAAU.............................................................................................................GGCAC...GUU...A...UUUCCG...UC...GCCGU..AA.G...UUUUGCCGGUUUACU.................................ACCG..A.AGGUAUUCAAGAAGUAGACUAUAAAGAUACUGUGCUGUUAA..AGAAUUA
   NZ_OU912926.1     -.cG.UGUU..U....UUA.....AGA...A...A...--.---.......-..-...--..-..-.A..........A....AG..A........U....G.A..C....A....A.....GA.AG..AGU..AACUC....UUC.............................................................................................................GCGUC...AAU...U...GUUCAA...AC...GCCGC..AA.A...UUUUGCCGCUUCACU.................................GCAG..A.UAAGAUUGCAGAAGUAGAUUAUAAAGAUUUGAAUAUUCUCA..AGGAAUU


   Structure         (..(.((((..(.....((......((...........((.(...........................................................(.(..(...............((.((..(((....(((....................................................................................................................))).....))).........))))........)))............(((.((((.......................................))))....)))............................)))..))))...)))))))


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rpsF-priB-rpsR-rplI



Position: 767-891, Conformation: #1







97% 90% 75% 50% Nucleotide present N N N Nucleotide identify E < 0.1 Base-pair covariation E < 0.05 Helix-level covariation 97% 90% 75%

R R R R R C Y U U Y R C G Y G A A R U U Y U G Y C G Y U U Y A C G C G A R R R Y R U R A R A U Y G A Y U A Y A A R G A Y U R R Y Y Y U R A A R R R Y U 5'