rpsF-priB-rpsR-rplI



Position: 767-891, Conformation: #0







DMS reactivity > 1.0 0.0 0.4 0.7 G/U/No data
Position: 0 (position.label in template: 0.5')5' Position: 1 (position.label in template: 1.A) Reactivity: nanA Position: 2 (position.label in template: 2.C) Reactivity: nanC Position: 3 (position.label in template: 3.G) Reactivity: nanG Position: 4 (position.label in template: 4.G) Reactivity: nanG Position: 5 (position.label in template: 5.A) Reactivity: nanA Position: 6 (position.label in template: 6.C) Reactivity: nanC Position: 7 (position.label in template: 7.U) Reactivity: nanU Position: 8 (position.label in template: 8.G) Reactivity: nanG Position: 9 (position.label in template: 9.A) Reactivity: nanA Position: 10 (position.label in template: 10.G) Reactivity: nanG Position: 11 (position.label in template: 11.C) Reactivity: nanC Position: 12 (position.label in template: 12.A) Reactivity: nanA Position: 13 (position.label in template: 13.A) Reactivity: nanA Position: 14 (position.label in template: 14.A) Reactivity: nanA Position: 15 (position.label in template: 15.A) Reactivity: nanA Position: 16 (position.label in template: 16.U) Reactivity: nanU Position: 17 (position.label in template: 17.G) Reactivity: nanG Position: 18 (position.label in template: 18.G) Reactivity: nanG Position: 19 (position.label in template: 19.U) Reactivity: nanU Position: 20 (position.label in template: 20.U) Reactivity: nanU Position: 21 (position.label in template: 21.U) Reactivity: nanU Position: 22 (position.label in template: 22.U) Reactivity: nanU Position: 23 (position.label in template: 23.G) Reactivity: nanG Position: 24 (position.label in template: 24.C) Reactivity: nanC Position: 25 (position.label in template: 25.A) Reactivity: nanA Position: 26 (position.label in template: 26.U) Reactivity: nanU Position: 27 (position.label in template: 27.G) Reactivity: nanG Position: 28 (position.label in template: 28.C) Reactivity: nanC Position: 29 (position.label in template: 29.C) Reactivity: nanC Position: 30 (position.label in template: 30.G) Reactivity: nanG Position: 31 (position.label in template: 31.A) Reactivity: nanA Position: 32 (position.label in template: 32.G) Reactivity: nanG Position: 33 (position.label in template: 33.C) Reactivity: nanC Position: 34 (position.label in template: 34.A) Reactivity: 1A Position: 35 (position.label in template: 35.G) Reactivity: nanG Position: 36 (position.label in template: 36.A) Reactivity: 0A Position: 37 (position.label in template: 37.U) Reactivity: nanU Position: 38 (position.label in template: 38.U) Reactivity: nanU Position: 39 (position.label in template: 39.G) Reactivity: nanG Position: 40 (position.label in template: 40.A) Reactivity: 1A Position: 41 (position.label in template: 41.A) Reactivity: 0A Position: 42 (position.label in template: 42.U) Reactivity: nanU Position: 43 (position.label in template: 43.U) Reactivity: nanU Position: 44 (position.label in template: 44.G) Reactivity: nanG Position: 45 (position.label in template: 45.A) Reactivity: 1A Position: 46 (position.label in template: 46.U) Reactivity: nanU Position: 47 (position.label in template: 47.A) Reactivity: 0A Position: 48 (position.label in template: 48.G) Reactivity: nanG Position: 49 (position.label in template: 49.A) Reactivity: 1A Position: 50 (position.label in template: 50.U) Reactivity: nanU Position: 51 (position.label in template: 51.U) Reactivity: nanU Position: 52 (position.label in template: 52.C) Reactivity: 0C Position: 53 (position.label in template: 53.U) Reactivity: nanU Position: 54 (position.label in template: 54.G) Reactivity: nanG Position: 55 (position.label in template: 55.G) Reactivity: nanG Position: 56 (position.label in template: 56.A) Reactivity: 0A Position: 57 (position.label in template: 57.G) Reactivity: nanG Position: 58 (position.label in template: 58.A) Reactivity: 1A Position: 59 (position.label in template: 59.C) Reactivity: 1C Position: 60 (position.label in template: 60.U) Reactivity: nanU Position: 61 (position.label in template: 61.A) Reactivity: 0A Position: 62 (position.label in template: 62.G) Reactivity: nanG Position: 63 (position.label in template: 63.C) Reactivity: 0C Position: 64 (position.label in template: 64.C) Reactivity: 0C Position: 65 (position.label in template: 65.A) Reactivity: 0A Position: 66 (position.label in template: 66.U) Reactivity: nanU Position: 67 (position.label in template: 67.A) Reactivity: 0.5A Position: 68 (position.label in template: 68.U) Reactivity: nanU Position: 69 (position.label in template: 69.G) Reactivity: nanG Position: 70 (position.label in template: 70.G) Reactivity: nanG Position: 71 (position.label in template: 71.C) Reactivity: 0C Position: 72 (position.label in template: 72.A) Reactivity: 0A Position: 73 (position.label in template: 73.C) Reactivity: 1C Position: 74 (position.label in template: 74.G) Reactivity: nanG Position: 75 (position.label in template: 75.U) Reactivity: nanU Position: 76 (position.label in template: 76.U) Reactivity: nanU Position: 77 (position.label in template: 77.A) Reactivity: 0.5A Position: 78 (position.label in template: 78.U) Reactivity: nanU Position: 79 (position.label in template: 79.U) Reactivity: nanU Position: 80 (position.label in template: 80.U) Reactivity: nanU Position: 81 (position.label in template: 81.C) Reactivity: 0.5C Position: 82 (position.label in template: 82.C) Reactivity: 0C Position: 83 (position.label in template: 83.G) Reactivity: nanG Position: 84 (position.label in template: 84.U) Reactivity: nanU Position: 85 (position.label in template: 85.C) Reactivity: 0C Position: 86 (position.label in template: 86.G) Reactivity: nanG Position: 87 (position.label in template: 87.U) Reactivity: nanU Position: 88 (position.label in template: 88.C) Reactivity: 0.5C Position: 89 (position.label in template: 89.G) Reactivity: nanG Position: 90 (position.label in template: 90.C) Reactivity: 0C Position: 91 (position.label in template: 91.A) Reactivity: 0A Position: 92 (position.label in template: 92.A) Reactivity: 1A Position: 93 (position.label in template: 93.G) Reactivity: nanG Position: 94 (position.label in template: 94.U) Reactivity: nanU Position: 95 (position.label in template: 95.U) Reactivity: nanU Position: 96 (position.label in template: 96.C) Reactivity: 0C Position: 97 (position.label in template: 97.U) Reactivity: nanU Position: 98 (position.label in template: 98.G) Reactivity: nanG Position: 99 (position.label in template: 99.C) Reactivity: 0C Position: 100 (position.label in template: 100.C) Reactivity: 0.5C Position: 101 (position.label in template: 101.G) Reactivity: nanG Position: 102 (position.label in template: 102.U) Reactivity: nanU Position: 103 (position.label in template: 103.U) Reactivity: nanU Position: 104 (position.label in template: 104.U) Reactivity: nanU Position: 105 (position.label in template: 105.C) Reactivity: 0.5C Position: 106 (position.label in template: 106.A) Reactivity: 1A Position: 107 (position.label in template: 107.C) Reactivity: 0C Position: 108 (position.label in template: 108.C) Reactivity: 0C Position: 109 (position.label in template: 109.G) Reactivity: nanG Position: 110 (position.label in template: 110.C) Reactivity: 0C Position: 111 (position.label in template: 111.G) Reactivity: nanG Position: 112 (position.label in template: 112.G) Reactivity: nanG Position: 113 (position.label in template: 113.A) Reactivity: 0A Position: 114 (position.label in template: 114.A) Reactivity: 0.5A Position: 115 (position.label in template: 115.G) Reactivity: nanG Position: 116 (position.label in template: 116.G) Reactivity: nanG Position: 117 (position.label in template: 117.C) Reactivity: 0C Position: 118 (position.label in template: 118.G) Reactivity: nanG Position: 119 (position.label in template: 119.U) Reactivity: nanU Position: 120 (position.label in template: 120.U) Reactivity: nanU Position: 121 (position.label in template: 121.C) Reactivity: 0.5C Position: 122 (position.label in template: 122.A) Reactivity: 0.5A Position: 123 (position.label in template: 123.A) Reactivity: 1A Position: 124 (position.label in template: 124.G) Reactivity: nanG Position: 125 (position.label in template: 125.A) Reactivity: 0A Position: 126 (position.label in template: 126.G) Reactivity: nanG Position: 127 (position.label in template: 127.A) Reactivity: 0.5A Position: 128 (position.label in template: 128.U) Reactivity: nanU Position: 129 (position.label in template: 129.C) Reactivity: 0C Position: 130 (position.label in template: 130.G) Reactivity: nanG Position: 131 (position.label in template: 131.A) Reactivity: 0.5A Position: 132 (position.label in template: 132.C) Reactivity: 0.5C Position: 133 (position.label in template: 133.U) Reactivity: nanU Position: 134 (position.label in template: 134.A) Reactivity: nanA Position: 135 (position.label in template: 135.U) Reactivity: nanU Position: 136 (position.label in template: 136.A) Reactivity: nanA Position: 137 (position.label in template: 137.A) Reactivity: nanA Position: 138 (position.label in template: 138.A) Reactivity: nanA Position: 139 (position.label in template: 139.G) Reactivity: nanG Position: 140 (position.label in template: 140.A) Reactivity: nanA Position: 141 (position.label in template: 141.U) Reactivity: nanU Position: 142 (position.label in template: 142.A) Reactivity: nanA Position: 143 (position.label in template: 143.U) Reactivity: nanU Position: 144 (position.label in template: 144.C) Reactivity: nanC Position: 145 (position.label in template: 145.G) Reactivity: nanG Position: 146 (position.label in template: 146.C) Reactivity: nanC Position: 147 (position.label in template: 147.U) Reactivity: nanU Position: 148 (position.label in template: 148.A) Reactivity: nanA Position: 149 (position.label in template: 149.C) Reactivity: nanC Position: 150 (position.label in template: 150.G) Reactivity: nanG Position: 151 (position.label in template: 151.C) Reactivity: nanC Position: 152 (position.label in template: 152.U) Reactivity: nanU Position: 153 (position.label in template: 153.G) Reactivity: nanG Position: 154 (position.label in template: 154.A) Reactivity: nanA Position: 155 (position.label in template: 155.A) Reactivity: nanA Position: 156 (position.label in template: 156.A) Reactivity: nanA Position: 157 (position.label in template: 157.A) Reactivity: nanA Position: 158 (position.label in template: 158.A) Reactivity: nanA Position: 159 (position.label in template: 159.C) Reactivity: nanC Position: 160 (position.label in template: 160.U) Reactivity: nanU Position: 161 (position.label in template: 161.A) Reactivity: nanA Position: 162 (position.label in template: 162.C) Reactivity: nanC Position: 163 (position.label in template: 163.A) Reactivity: nanA Position: 164 (position.label in template: 164.U) Reactivity: nanU Position: 165 (position.label in template: 165.C) Reactivity: nanC Position: 166 (position.label in template: 166.3')3' 10 20 30 50 100 150


rpsF-priB-rpsR-rplI



Position: 767-891, Conformation: #0







Retained alignments:


   NC_004347.2       U..G.G..CCA.A..A.-.-----.....---aucgcuu.................................agucaucc..-----.-..AU.G.....CCG.A..A..AA...U..G.U...C...G...A...A....U..UG.....A....A..A....-..A..C.....U.....UA..GG.A.G.AC.U.-G..U.C....A....A..AU......................................................................................GGC.ACGU...UA.U...UUC.C...GUCGUCG...C...AAG...UUCUGC...CGUUUCACC.GCUGAA..GGUGUUGCAGA.AAUUGAUUACAAAGAUAUCGUUACUUU
   NC_004578.1       -..-.-..---.-..-.-.-----.....---..................................................-----.-..--.-.....---.-..-..--...-..-.-...-...-...-...-....-..--.....-....-..-....-..-..-.....-.....--..--.-.-.AA.C.AG..C.-....-....-..--gacguuagcgauaacgcugacgaguaauc...........................cacggaccuuuugaggagccaauuacaug.-GC.ACGU...UU.C...UUC.C...GUCGUCG...U...AAA...UUCUGC...CGCUUCACC.GCUGAA..GACGUCAAAGA.GAUCGAUUACAAAGAUCUCAACACUCU
   NC_004603.1       U..G.G..CGU.U..G.G.GAAAU.....UAG..................................................UGUUA.C..AU.G.....CCG.A..C..AA...U..A.U...U...A...C...U....C..AA.....Au..uU..A....A..G..A.....U.....CA..GG.A.G.A-.U.AG..C.C....-....C..AU......................................................................................GGC.UCGU...UU.C...UUC.C...GUCGUCG...U...AAA...UUCUGC...CGUUUCACU.GCAGAA..GGCGUACAAGA.GAUUGAUUACAAAGACGUAGCAACUCU
   NC_005126.1       U..G.G..UCU.U..A.A.CAAAC.....UGG..................................................UUCUU.C..AU.G.....CCG.A..G..CA...G..A.U...U...G...A...A....U..UG.....A....U..A....G..A..U.....U.....CU..GG.A.G.AC.U.AG..C.C....A....A..AU......................................................................................GGC.ACGU...UA.U...UUC.C...GUCGUCG...C...AAG...UUCUGC...CGUUUCACA.GCGGAA..GGCGUUCAAGA.GAUUGAUUAUAAAGACAUCGCUACGCU
   NC_005966.1       -..-.-..---.-..-.-.-----.....---..................................................----A.C..GU.G....aAGA.A..G..CA...C..A.A...C...A...A...A....U..UC.....-....A..A....G..A..U.....U.....CU..GC.U.G.A-.-.AG..C.-....-....-..--uuaaggaga...................................................................acaucaaug.-GC.ACGU...UU.U...UAC.C...GUCGUCG...C...AAG...UUCUGC...CGCUUUACA.GCUGAG..AAUGUUGCGUA.CAUCGACUACAAAGAUAUCGACACUUU
   NC_006300.1       A..G.G..GUU.G..A.G.CCAAU.....UAG..................................................UUUUA.C..AU.G.....CCG.A..G..CA...U..A.U...C...G...A...A....UauUU.....A....U..A....G..A..U.....U.....-A..GG.A.G.AC.U.AG..C.C....A....A..AU......................................................................................GGC.ACGU...UA.U...UUC.C...GUCGUCG...C...AAG...UUCUGC...CGUUUUACA.GCGGAA..AACGUAGUUGA.AAUCGAUUAUAAAGAUAUCGCUACAUU
   NC_006512.1       U..G.G..CUC.A..C.C.UCGUU.....UGG..................................................UACUU.C..AU.G.....CUC.A..G..CA...U..C.U...C...G...A...A....U..UG.....A....U..-....-..-..U.....U.....AA..GG.A.G.AC.C.AU..-.C....-....-..AU......................................................................................GGC.UCGU...UU.U...UUU.C...GUCGCCG...C...AAA...UUCUGC...CGCUUUAAA.GCAGAU..GGCGUAAAAGA.AAUUGAUUAUAAAGAUAUCGCUACGCU
   NC_006513.1       A..G.G..AA-.-..A.C.GAAAA.....UGG..................................................CUUUC.A..AG.C.....CCA.A..G..--...-..-.U...C...G...A...A....G..UU.....C....A..A....G..A..A.....A.....AA..GG.A.U.GA.U.CG..C.G....G....C..A-a...................................................................................c.CGC.-GGU...CU.G...UUC.A...AGCGUCG...C...AAG...UUCUGC...CGCUUCACC.GCGGAG..AAGAUCGAAGA.AGUCGACUACAAGGAUGUGGAUAUCCU
   NC_007204.1       C..G.U..CCA.G..A.U.CGUGA.....UGA..................................................UAGCG.AcgAC.A.....ACG.A..C..CA...C..A.G...U...G...A...A....G..A-.....C....U..A....A..U..U.....A.....AA..GG.A.G.AA.U.AC..U.C....-....-..AU......................................................................................GGC.ACGU...UU.C...UAU.C...GCCGUCG...C...AAA...UUCUGC...CGUUUCACU.GCUGAA..GGCAUCACUCA.CAUCGAUUAUAAAGAUGUUGAAUUGCU
   NC_007481.1       C..G.G..CCU.U..A.G.CCAAU.....UGG..................................................UUUUG.C..AU.G.....CUC.A..G..CA...U..A.U...C...G...A...A....A..GA.....A....U..U....A..U..U.....U.....GA..G-.G.A.AU.U.AA..U.C....U....C..AU......................................................................................GGC.ACGU...UA.U...UUC.A...GACGUCG...U...AAG...UUUUGC...CGCUUUAAA.GCGGAA..GGCGUACAACA.AAUCGAUUACAAAGAUCUAGCUACUCU
   NC_007484.1       -..-.-..-GA.U..A.GcCUGGU.....UG-u..............................................g..-UUGGcC..AG.G.....UUG.A..A..AG...A..A.A...U...U...A...A....U..UC.....A....U..U....G..A..A.....G.....GU..GG.A.A.UC.-.--..-.-....-....-..AU......................................................................................GGC.ACGU...UU.U...UUU.C...GGCGCAG...A...AAA...UUUUGC...CGCUUUACA.GCCGAG..GGAGUGAAAGA.GAUUGACUACAAAGAUCUAGCUACCCU
   NC_007645.1       -..-.U..ACU.G..A.C.-----.....---g.............................................ac..-----.G..--.-.....AAG.A..C..AG...C..A.A...C...G...A...C....G..AA.....U....A..A....G..U..U.....A.....UA..GG.A.G.GC.U.AA..C.C....A....U..--......................................................................................GGC.UCGU...UU.C...UUU.C...GCAGAAG...A...AAG...UUCUGC...CGUUUUACU.GCCGAA..GGCGUAAAAGA.GAUCGAUUACAAAGAUGUAGAAGUACU
   NC_007712.1       U..G.G..CCU.C..A.G.CAAAA.....UAG..................................................UUCUG.C..AU.A.....CCG.A..G..CA...G..A.U...U...G...A...U....U..UG.....A....U..A....G..A..U.....U.....CU..GG.A.G.AC.U.AG..C.C....C....U..AU......................................................................................GGC.ACGU...UA.U...UUC.C...GUCGUCG...C...AAG...UUCUGC...CGUUUCACC.ACGGAA..GGCGUUGUUGA.GAUCGACUAUAAAGACAUCGCUACGCU
   NC_007912.1       -..-.-..---.-..A.G.CCGA-.....---..................................................AUCAG.C..-U.G.....CUG.A..A..GA...A..G.U...U...G...A...A....G..AC.....G....A..A....G..A..G.....U.....CU..UU.A.G.AC.-.--..-.-....-....-..--gaagaagccgaugaugaaucaucugaa..............................gacgaaagcgaggaggcauaaucauggc.---.ACGU...UU.U...UUC.C...GACGUCG...U...AAG...UUCUGU...CGUUUCACU.GCCGAA..GGCGUGAAAAG.CAUCGACUAUAAAGAUUUAGAUACUCU
   NC_007951.1       A..G.G..ACU.G..A.-.-----.....---a..............................................c..-----.-..AU.G.....CCC.C..G..C-...-..-.-...-...-...-...-....-..--.....-....-..-....-..-..-.....-.....--..--.-.-.--.-.--..-.-....-....-..--ccgacugguaagaaauucgac...........................................aagcgucgucagcaacagaau.---.CCGC...U-.C...UUC.A...AGCGCAA...G...AAG...UUCUGC...CGUUUCACG.GCCGCU..GGCGUCGAUCA.CAUCGACUACAAGGACCUCGAAACGCU
   NC_007954.1       U..G.G..ACA.A..A.A.CCGUU.....UGG..................................................UCUUG.C..AU.G.....CUG.A..A..AA...U..G.U...C...G...A...A....U..UG.....A....A..A....-..A..C.....U.....UA..GG.A.G.AC.U.GU..C.A....A....C..AU......................................................................................GGC.ACGU...UA.U...UUC.C...GUCGUCG...C...AAG...UUCUGC...CGUUUCACC.UCUGAA..GGUGUUGCAGA.AAUUGAUUACAAAGAUAUCGUUACUUU
   NC_007963.1       -..-.-..AAC.-..-.-.-----.....---gaagaagccc............................ccgcugacgc..-----.-..--.-.....CGA.A..G..CC...A..A.C...U...G...A...U....C..CG.....A....U..-....-..-..C.....U.....CU..GG.A.G.GA.U.AA..C.C....-....C..AU......................................................................................GGC.ACGC...UU.U...UUC.C...GUCGCCG...U...AAG...UUCUGC...CGCUUCACC.GCCGAA..GGCGUGAAGUA.CAUCGAUUACAAGGACAUCGAUACACU
   NC_008260.1       -..-.-..---.-..-.-.---AA.....UUG.................................................cUUGCC.C..AA.Ac...gCUG.C..A..AA...G..C.C...U...U...A...A....C..UA.....A....-..G....G..A..U.....Uc..gaCA..GG.A.G.AU.U.AU..C.C....A....-..AU......................................................................................GGC.CCGU...UU.U...UAU.C...GCCGCCG...C...AAG...UUCUGC...CGCUUUACU.GCGGAA..GGUGUUGAGUA.CAUCGAUUACAAAGAUCUCGACACCCU
   NC_008340.1       C..G.G..AU-.-..-.-.-----.....---cacccggc...............................ucgauacca..-----.-..--.-.....CCG.A..A..GA...A..U.C...U...-...-...-....-..--.....-....-..-....-..C..A.....U.....CA..GG.A.G.--.-.--..-.-....-....U..--aauc............................................................................gacau.GGC.ACGC...UU.U...UUC.C...GCCGCCG...C...AAG...UACUGC...CGUUUCACC.GCCGAG..GGUGUGAAGGA.GAUCGACUACAAGGAUCUCAACACCCU
   NC_008345.1       U..G.G..ACA.A..A.A.CCGUU.....UAG..................................................UCUUG.C..AU.G.....CUG.A..A..AA...U..G.U...C...G...A...A....U..UG.....A....A..A....-..A..C.....U.....UA..GG.A.G.AC.U.GU..C.A....A....A..AU......................................................................................GGC.ACGU...UA.U...UUC.C...GUCGUCG...C...AAG...UUCUGC...CGCUUCACC.UCUGAA..GGUGUUGUCGA.GAUUGAUUACAAAGAUAUCGUUACUUU
   NC_008700.1       U..G.G..ACA.A..A.G.UCGCU.....UGG..................................................UACUG.C..AU.G.....CCG.A..A..AA...U..G.U...C...G...A...A....U..UG.....A....A..A....U..C..U.....-.....UA..GG.A.G.AC.U.-G..U.C....A....C..AU......................................................................................GGC.ACGU...UA.U...UUC.C...GUCGUCG...C...AAG...UUCUGC...CGUUUCACC.GCUGAA..GGUGUUGCAGA.GAUCGAUUACAAAGAUAUUGCUACUCU
   NC_008709.1       A..A.G..CUU.G..-.G.AAAAC.....UCG..................................................UGUUG.C..AU.G.....CUC.A..G..UA...C..A.U...A...G...A...A....C..AA.....-....-..-....-..-..A.....U.....UU..GA.G.G.AA.A.UA..C.C....A....-..-U......................................................................................GGC.UCGU...UA.C...UUC.C...GCCGUCG...U...AAG...UUCUGU...CGUUUCACC.GCUGAA..GGUGUUAGCGA.AAUUGAUUACAAAGACGUUGUUACGUU
   NC_009092.1       C..C.G..CCU.G..-.G.UA---.....---...............................................u..---UA.C..AC.G.....CUG.A..A..AA...U..G.U...C...G...A...A....U..UG.....A....A..A....-..A..C.....U.....UA..GG.A.G.AC.U.GU..C.A....A....A..AU......................................................................................GGC.ACGU...UA.U...UUC.C...GUCGUCG...C...AAG...UUCUGC...CGUUUCACU.GCAGAA..GGCGUUACUGA.GAUCGAUUACAAAGAUAUCGCUACUCU
   NC_009446.1       -..-.-..---.-..-.-.---AA.....UGA..................................................UGAUG.C..AA.G.....---.-..-..--...-..-.-...-...-...-...-....-..--.....-....-..-....-..-..-.....-.....--..--.-.-.--.-.--..-.-....-....-..--aaguuaaga..................................................................aauaaggagc.---.ACAU...AA.U...GGCaC...GUCGUAA...A...AGA...AUUUGU...CGUUUUACC.GCUGAA..GGCGUUAAAGA.AAUCGAUUAUAAAGAUUUGGAAACGUU
   NC_009831.1       U..G.G..UCA.G..A.A.UCGUU.....UGG..................................................UAUUA.C..AC.G.....CUG.A..A..AA...U..G.U...C...G...A...A....U..UG.....A....A..A....-..A..C.....U.....UA..GG.A.G.AC.U.-G..U.C....A....C..AU......................................................................................GGC.ACGU...UA.U...UUC.C...GUCGUCG...C...AAG...UUCUGC...CGUUUCACU.GCAGAA..GGUGUUACAGA.GAUCGAUUACAAAGAUAUCGUAACUUU
   NC_010334.1       U..G.G..UCA.A..A.A.UCGCU.....UGG..................................................UUUUA.C..AC.G.....CUG.A..A..AA...U..G.U...C...G...A...A....U..UG.....A....A..A....-..A..C.....U.....UA..GG.A.G.AC.U.-G..U.C....A....C..AU......................................................................................GGC.ACGU...UA.U...UUC.C...GUCGUCG...C...AAG...UUCUGC...CGUUUCACU.GCAGAA..GGCGUUACCGA.GAUCGAUUACAAAGAUAUCGUAACUUU
   NC_010506.1       U..G.G..UCA.A..A.A.CCGUU.....UGG..................................................UAUUA.C..AC.G.....CUG.A..A..AA...U..G.U...C...G...A...A....U..UG.....A....A..A....-..A..C.....U.....UA..GG.A.G.AC.U.-G..U.C....A....C..AU......................................................................................GGC.ACGU...UA.U...UUC.C...GUCGUCG...C...AAG...UUCUGC...CGUUUCACU.GCAGAA..GGUGUUACCGA.GAUCGAUUACAAAGAUAUCGUUACUUU
   NC_010519.1       U..G.G..UUU.A..A.A.UCAAU.....UAA..................................................UAUUG.C..AU.G.....CCG.A..G..CA...A..A.U...C...G...A...A....U..UU.....A....U..A....G..A..G.....U.....-A..GG.A.G.AC.U.AG..C.C....A....A..AU......................................................................................GGC.ACGU...UA.U...UUC.C...GUCGUCG...U...AAG...UUCUGC...CGUUUUACA.GCGGAA..AAUGUAGUAGA.AAUCGAUUAUAAAGAUAUUGCUACAUU
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   NZ_LR134343.1     U..C.G.cACC.G..A.G.C---A.....AGG..................................................U---G.A..GA.A.....CGA.U..G..CU...G..A.C...A...G...U...G....A..UA.....A....C..U....A..A..U.....U.....AA..GG.A.G.AU.U.U-..C.A....U....C..AU......................................................................................GGC.ACGU...UU.U...UAU.C...GUCGUCG...U...AAG...UUCUGC...CGUUUUACU.GCCGAA..GGCAUCUCUCA.CAUUGAUUACAAAGAUGUAGAAUUGCU
   NZ_LR134376.1     -..-.-..--A.A..G.A.UGCUG.....UU-gaagcgucuuccgaagagua.......auucuuagaucaacgcauuag..A----.-..--.-.....---.-..-..--...-..-.-...-...-...-...-....-..--.....-....-..-....-..-..-.....-.....--..GG.A.U.AA.A.GG..C.C....A....-..--....................................................................................u.GGC.ACGU...UA.U...UUC.C...GUCGUCG...U...AAG...UUCUGC...CGCUUCACC.GCCGAG..AACGUUACCGA.GAUCGACUACAAAGAUAUCGUUACUCU
   NZ_LR134494.1     U..G.G..ACU.G..A.A.CAAAA.....UGG..................................................UGUUG.C..AU.G.....CCG.A..G..CA...G..A.U...U...G...A...A....U..UG.....A....U..A....G..A..U.....U.....CU..GG.A.G.AC.U.AG..C.C....U....A..AU......................................................................................GGC.ACGU...UA.U...UUC.C...GUCGUCG...C...AAG...UUCUGC...CGUUUCACA.GCGGAA..GGCGUUGUUGA.GAUCGAUUACAAAGAUAUCGCAACGUU
   NZ_LR134510.1     -..-.-..--A.A..C.G.CAAUU.....A-G..................................................UAUUA.C..AC.G.....CCG.A..G..CA...G..A.U...C...G...A...A....U..UU.....A....U..A....G..A..U.....U.....-A..GG.A.G.AA.U.CG..C.C....A....C..AU......................................................................................GGC.ACGU...UA.U...UUC.C...GUCGUCG...U...AAG...UUCUGC...CGUUUCACA.GCGGAA..AAUGUUACUGA.AAUCGAUUACAAAGAUAUCGCAACAUU
   NZ_LR134515.1     C..G.G..UUU.A..A.G.CCAAU.....UAG..................................................UCGUU.C..AU.G.....CCG.A..A..CA...U..A.U...U...G...A...A....U..UU.....A....U..A....G..A..U.....-.....CA..GG.A.G.A-.-.AG..C.C....A....A..AU......................................................................................GGC.ACGU...UA.U...UUC.C...GUCGUCG...U...AAG...UUCUGC...CGUUUCACA.GCGGAA..AAUGUUGUUGA.GAUCGAUUACAAAGAUAUCGCUACAUU
   NZ_LR134531.1     U..G.G..GCU.G..A.A.UAAAU.....UAG..................................................UGUUA.C..AU.G.....CCG.A..G..CA...G..A.U...U...G...A...A....U..UG.....A....U..A....G..A..U.....U.....CU..GG.A.G.AC.U.AG..C.C....A....U..AU......................................................................................GGC.ACGU...UA.U...UUC.C...GUCGUCG...C...AAG...UUCUGC...CGUUUCACA.GCGGAA..GGCGUUCAAGA.GAUCGACUAUAAAGAUAUCGCAACGCU
   NZ_LR134533.1     G..A.A..AUA.U..A.C.CAAAA.....CGG..................................................UAUUG.C..GA.A.....UAC.A..G..AA...U..A.U...U...A...A...A....G..A-.....-....-..A....U..A..U.....A.....--..--.-.-.--.-.--..-.-....-....-..--aagguuaaau................................................................gacauggcucg.---.UCAA...UC.A...UUC.A...AACGUAG...A...AAA...UUCUGC...CGUUUCACG.GCUGAA..AAAAUUCAAGA.AGUCGAUUACAAACAAGUAGACCUGUU
   NZ_LR215729.2     -..-.-..---.-..-.-.-----.....---..................................................-----.A..AC.G.....CUG.A..C..GA...G.uA.A...U...C...C...A....C..GG.....A....U..C....U..A..U.....U.....GA..GG.A.G.CC.U.A-..U.C....A....A..AU......................................................................................GGC.ACGU...UU.C...UUC.C...GUCGUCG...U...AAA...UUCUGC...CGUUUCACC.GCUGAA..GACGUGAAAGA.GAUCGAUUUCAAAGAUCUCAACACGCU
   NZ_LR217713.1     U..G.G..UUU.G..A.G.AUAAA.....UCA..................................................UGCUU.C..AU.G.....UCA.A..U..AA...G..A.U...U...G...A...G....U..UC.....A....U..A....G..A..G.....U.....UU..GG.A.G.AG.U.AA..U.U....A....U..AU......................................................................................GUC.CCGU...UA.U...UUU.C...GUCGUCG...U...AAG...UUUUGU...CGAUUUACU.GCUGAA..GGUGUGCAGGA.GAUUGAUUAUAAAGAUAUUGCUAUAUU
   NZ_LR699007.1     U..G.G..AUU.A..U.C.AAAAC.....UGG..................................................UUCUU.C..AU.G.....CCG.A..A..CA...U..A.U...U...G...A...A....U..UG.....A....U..A....G..A..U.....U.....CU..GG.A.G.AC.U.AG..C.C....A....U..AU......................................................................................GGC.ACGU...UA.U...UUC.C...GUCGUCG...U...AAA...UUCUGC...CGUUUCACC.GCAGAA..GGCGUUCAAGA.GAUUGAUUAUAAAGACAUCGCUACGCU
   NZ_LR699553.1     A..G.G..ACU.G..A.-.-----.....---a..............................................c..-----.-..AU.G.....CCC.C..G..C-...-..-.-...-...-...-...-....-..--.....-....-..-....-..-..-.....-.....--..--.-.-.--.-.--..-.-....-....-..--ccgacugguaagaaauucgac...........................................aagcgucgucagcaacaaaau.---.CCGC...U-.C...UUC.A...AGCGCAA...G...AAG...UUCUGC...CGUUUCACG.GCCGCU..GGCGUCGAUCA.CAUCGACUACAAAGACCUCGAAACGCU
   NZ_LR778175.1     -..-.-..---.-..-.-.-----.....---..................................................-----.-..--.A.....ACU.A..U..UA...U..A.U...U...G...-...-....-..CG.....A....U..A....G..G..U.....U.....AU..AG.A.A.GA.U.AG..A.U....-....U..AU......................................................................................GGC.ACAU...UA.U...UUU.C...GACGUAA...A...AAA...UUUUGU...CGUUUCACA.GCCGAA..GGCGUUAAGGA.AAUUGAUUAUAAAGAUCUAGCAACCCU
   NZ_LR778301.1     -..-.-..---.-..-.-.---AA.....U-U..................................................UUUGG.A..AG.G.....AAA.U..C..CA...G..A.U...G...G...C...A....U..UC.....A....A..A....-..-..-.....-.....CC..GA.A.G.AG.U.GG..C.-....-....-..--gcuaacaacaagcgc......................................................aaggacgacaagggcc.-GC.A-GC...CU.G...UUC.A...AGCGCCG...C...AAA...UUCUGC...CGCUUCAGU.GCGGAG..AAGAUCGAAUA.UAUCGAUUACAAGGACAUCGAAAUCCU
   NZ_LR884459.1     -..-.-..---.-..-.-.-----.....---..................................................-----.-..--.-.....CAC.U..G..AC...G..A.U...A...G...C...A....G..UG.....AcgacU..A....A..U..U.....A.....AA..GG.-.-.AG.A.AA..U.C....U....C..AU......................................................................................GGC.ACGU...UU.U...UAU.C...GCCGUCG...U...AAG...UUCUGC...CGUUUCACC.GCAGAA..GGUAUUACCCA.CAUCGAUUAUAAAGAUGUAGAAUUAUU
   NZ_LR890047.1     U..AcG..AUU.G..U.U.UGAAA.....---cgu..........................................uau..UUUUA.U..AC.G.....CUA.A..A..AA...G..A.U...U...G...A...A....U..UU.....A....U..A....G..G..U.....U.....UU..GG.A.G.AC.U.AG..C.U....A....U..AU......................................................................................GGC.ACGU...UA.U...UUU.C...GUCGUCG...C...AAG...UUCUGC...CGUUUUACC.GCGGAG..GAUGUUCAAGA.GAUUGAUUAUAAGGAUAUCUCUACUCU
   NZ_LS483250.1     -..-.-..---.-..-.-.----A.....ACA..................................................UUUAG.U..UA.U.....CCA.A..-..UU...A..U.U...U...G...A...G....A..AG.....A....U..-....-..-..U.....U.....UA..GG.A.G.AU.U.UU..A.A....U....U..AU......................................................................................GGC.ACGU...UU.U...UUC.C...GUCGUCG...U...AAA...UUCUGU...CGUUUCACU.UCUGAA..GGUGUUACGGA.GAUUGAUUAUAAAGAUAUCGCUACGUU
   NZ_LS483422.1     U..G.G..GAU.C..A.G.UAAAU.....UAG..................................................UCCUU.C..AU.G.....CCG.A..G..CA...G..A.U...U...G...A...U....U..UG.....A....U..A....G..A..U.....U.....CU..GG.A.G.AC.U.AG..C.C....U....U..AU......................................................................................GGC.ACGU...UA.U...UUC.C...GUCGUCG...C...AAG...UUCUGC...CGUUUCACA.GCGGAA..GGCGUUCAAGA.GAUCGACUAUAAAGAUAUCGCAACGCU
   NZ_LS483429.1     U..G.G..GUU.A..U.G.CCAAU.....UAG..................................................UUUUA.C..AU.G.....CCG.A..G..CA...A..A.U...C...G...A...A....U..UU.....A....U..A....G..A..U.....U.....-A..GG.A.G.AC.U.AG..C.C....A....A..AU......................................................................................GGC.ACGU...UA.U...UUC.C...GUCGUCG...U...AAG...UUCUGC...CGUUUCACA.GCGGAA..AAUGUUGUUGA.AAUCGAUUAUAAAGAUAUCGCUACAUU
   NZ_LS483443.1     U..G.G..GUC.A..A.A.ACAAU.....UAG..................................................UCUUA.C..AU.G.....CCG.A..G..CA...A..A.U...C...G...A...A....U..UU.....A....U..A....G..A..U.....U.....-A..GG.A.G.AC.C.AG..C.C....A....A..AU......................................................................................GGC.ACGU...UA.U...UUC.C...GUCGUCG...U...AAG...UUCUGC...CGUUUCACA.GCGGAA..AAUGUUGUUGA.AAUCGAUUACAAAGAUAUCGCUACAUU
   NZ_LS483458.1     U..G.G..GUU.A..U.G.CCAAU.....UAG..................................................UUUUA.C..AU.G.....CCG.A..G..CA...A..A.U...C...G...A...A....U..UU.....A....U..A....G..A..U.....U.....-A..GG.A.G.AC.U.AG..C.C....A....A..AU......................................................................................GGC.ACGU...UA.U...UUC.C...GUCGUCG...U...AAG...UUCUGC...CGUUUCACA.GCGGAA..AAUGUUGUUGA.AAUCGAUUACAAAGAUAUCGCUACAUU
   NZ_LS483470.1     C..G.G..UCU.U..A.A.UAAAC.....UGG..................................................UGUUA.C..AU.G.....CCG.A..G..CA...G..A.U...U...G...A...U....U..UG.....A....U..A....G..A..U.....U.....CU..GG.A.G.AG.U.AG..C.C....A....U..AU......................................................................................GGC.ACGU...UA.U...UUC.C...GUCGUCG...C...AAG...UUCUGC...CGUUUUACC.GCGGAA..GGCGUUCAAGA.GAUCGAUUAUAAAGAUAUCGCAACGCU
   NZ_LT615367.1     U..G.G..CCU.C..A.G.UAAAU.....UGG..................................................UGCUG.C..AU.G.....CCG.A..G..CA...G..A.U...U...G...A...A....U..UG.....A....U..U....G..A..U.....U.....CU..GG.A.G.AC.U.AG..C.C....A....A..AU......................................................................................GGC.ACGU...UA.U...UUC.C...GUCGUCG...C...AAG...UUCUGC...CGUUUCACC.GCGGAA..GGCGUUCAAGA.GAUUGACUAUAAAGACAUCGCAACGCU
   NZ_LT897836.1     U..G.G..CCU.C..A.G.UAAAA.....UAG..................................................UUUUA.C..AU.G.....CCG.A..G..CA...A..A.U...U...G...A...U....U..UG.....A....U..A....G..A..G.....U.....CC..GG.A.G.AC.U.AA..C.U....A....U..AU......................................................................................GAC.GCAU...UA.U...UUC.C...GUCGCCG...C...AAG...UUUUGU...CGUUUUACU.GCAGAA..GGCGUUGUUGA.GAUCGACUACAAAGACAUUGCUACACU
   NZ_LT906448.1     U..G.G..CUU.A..A.A.CCAAU.....UAG..................................................UAUUA.C..AU.G.....CCG.A..G..CA...A..A.U...C...G...A...A....U..UU.....A....U..A....G..A..U.....U.....-A..GG.A.G.AC.U.AG..C.C....A....A..AU......................................................................................GGC.ACGU...UA.U...UUC.C...GUCGUCG...U...AAG...UUCUGC...CGUUUCACA.GCGGAA..AAUGUAGUAGA.AAUCGAUUAUAAAGAUGUAGCUACAUU
   NZ_LT906463.1     U..G.G..UUU.A..A.A.UCAAC.....UAG..................................................UAUUA.C..AC.G.....CCG.A..G..CA...A..A.U...C...G...A...A....U..UU.....A....U..A....G..A..U.....U.....-A..GG.A.G.AC.U.AG..C.C....A....A..AU......................................................................................GGC.ACGU...UA.U...UUC.C...GUCGUCG...U...AAG...UUCUGC...CGUUUCACU.GCGGAA..AAUGUUGUUGA.AAUCGAUUACAAAGAUAUCGCUACAUU
   NZ_OU015521.1     -..-.-..---.-..-.-.-----.....---..................................................-----.-..--.-.....---.A..A..AG...G..A.C...U...G...U...U....G..AA.....A....A..A....C..U..U.....G.....AA..GA.A.A.CC.U.AA..G.A....G....G..AA......................................................................................UAU.AUGU...CA.U...UU-.C...AUCGCAA...A...AAA...UUCUGU...GCUUUUAAA.GCAAAA..AAUAUUCGAGA.AAUCGAUUAUAAGGAUAUCGAUACGUU
   NZ_OU343031.1     -..-.-..---.-..-.-.-----.....---..................................................-----.-..--.-.....---.-..-..--...-..-.-...-...-...-...-....-..--.....-....-..-....-..-..-.....-.....-A..AA.A.G.AC.U.AA..U.U....A....U..--ggcucguccuacuaguaaaaaau.......................................ucgauaaacgucgccaacaacaa.AAU.CCGC...U-.U...UUC.A...AGCGUAA...A...AAG...UUCUGC...CGCUUUACU.GCCGCU..AGCGUUAAAUA.UAUCGAUUAUAAAGAUAUAGAGACGUU
   NZ_OU594967.1     C..G.G..U-G.A..A.U.CAAAA....cUGG..................................................UUCUG.C..AU.G.....CCC.A..A..CA...C..A.U...A...G...A...A....U..UG.....U....U..A....G..C..U.....U.....GA..G-.-.-.GA.U.AA..A.C....U....U..AU......................................................................................GGC.ACGU...UU.U...UUC.C...GUCGUCG...U...AAA...UUCUGC...CGUUUUUCG.GCUGAA..GGCGUAGUUGA.AAUCGAUUAUAAAGAUAUCACUACUUU
   NZ_OU907312.1     -..-.-..---.-..A.A.UAGGC.....UAG..................................................UACUG.C..AU.G.....CUG.A..A..UC...C..G.U...U...C...A...A....U..UG.....A....C..U....U..A..U.....U.....CU..GG.A.G.AG.G.AA..U.U....C....A..AU......................................................................................GGC.ACGU...UA.U...UUC.C...GUCGCCG...U...AAG...UUUUGC...CGGUUUACU.ACCGAA..GGUAUUCAAGA.AGUAGACUAUAAAGAUACUGUGCUGUU


   Structure         (..(.(...........(.(((((..........................................................))))).)...........)))................................................................................................(..(.(....................................................................................................)))............................................(((((.............)))))...(((((....((...((.........))..))...)))))


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rpsF-priB-rpsR-rplI



Position: 767-891, Conformation: #0







97% 90% 75% 50% Nucleotide present N N N Nucleotide identify E < 0.1 Base-pair covariation E < 0.05 Helix-level covariation 97% 90% 75%

R R R C C G U U Y U U Y G C G Y G A A R U U Y U G C C G Y U U Y A C G C G A A G G Y R U R A R A U Y G A Y U A Y A A A G A Y U G A Y Y U 5'