rpsF-priB-rpsR-rplI



Position: 346-490, Conformation: #1







DMS reactivity > 1.0 0.0 0.4 0.7 G/U/No data
Position: 0 (position.label in template: 0.5')5' Position: 1 (position.label in template: 1.C) Reactivity: nanC Position: 2 (position.label in template: 2.G) Reactivity: nanG Position: 3 (position.label in template: 3.C) Reactivity: nanC Position: 4 (position.label in template: 4.U) Reactivity: nanU Position: 5 (position.label in template: 5.U) Reactivity: nanU Position: 6 (position.label in template: 6.C) Reactivity: nanC Position: 7 (position.label in template: 7.A) Reactivity: nanA Position: 8 (position.label in template: 8.A) Reactivity: nanA Position: 9 (position.label in template: 9.C) Reactivity: nanC Position: 10 (position.label in template: 10.G) Reactivity: nanG Position: 11 (position.label in template: 11.A) Reactivity: nanA Position: 12 (position.label in template: 12.U) Reactivity: nanU Position: 13 (position.label in template: 13.G) Reactivity: nanG Position: 14 (position.label in template: 14.C) Reactivity: nanC Position: 15 (position.label in template: 15.C) Reactivity: nanC Position: 16 (position.label in template: 16.G) Reactivity: nanG Position: 17 (position.label in template: 17.U) Reactivity: nanU Position: 18 (position.label in template: 18.U) Reactivity: nanU Position: 19 (position.label in template: 19.A) Reactivity: nanA Position: 20 (position.label in template: 20.U) Reactivity: nanU Position: 21 (position.label in template: 21.C) Reactivity: nanC Position: 22 (position.label in template: 22.C) Reactivity: nanC Position: 23 (position.label in template: 23.G) Reactivity: nanG Position: 24 (position.label in template: 24.C) Reactivity: nanC Position: 25 (position.label in template: 25.A) Reactivity: nanA Position: 26 (position.label in template: 26.G) Reactivity: nanG Position: 27 (position.label in template: 27.C) Reactivity: nanC Position: 28 (position.label in template: 28.A) Reactivity: nanA Position: 29 (position.label in template: 29.U) Reactivity: nanU Position: 30 (position.label in template: 30.G) Reactivity: nanG Position: 31 (position.label in template: 31.G) Reactivity: nanG Position: 32 (position.label in template: 32.U) Reactivity: nanU Position: 33 (position.label in template: 33.U) Reactivity: nanU Position: 34 (position.label in template: 34.A) Reactivity: nanA Position: 35 (position.label in template: 35.U) Reactivity: nanU Position: 36 (position.label in template: 36.G) Reactivity: nanG Position: 37 (position.label in template: 37.C) Reactivity: 0.5C Position: 38 (position.label in template: 38.G) Reactivity: nanG Position: 39 (position.label in template: 39.U) Reactivity: nanU Position: 40 (position.label in template: 40.A) Reactivity: 0A Position: 41 (position.label in template: 41.C) Reactivity: 1C Position: 42 (position.label in template: 42.C) Reactivity: 1C Position: 43 (position.label in template: 43.A) Reactivity: 0.5A Position: 44 (position.label in template: 44.A) Reactivity: 0A Position: 45 (position.label in template: 45.G) Reactivity: nanG Position: 46 (position.label in template: 46.C) Reactivity: 1C Position: 47 (position.label in template: 47.A) Reactivity: 0A Position: 48 (position.label in template: 48.C) Reactivity: 0.5C Position: 49 (position.label in template: 49.G) Reactivity: nanG Position: 50 (position.label in template: 50.C) Reactivity: 0C Position: 51 (position.label in template: 51.U) Reactivity: nanU Position: 52 (position.label in template: 52.G) Reactivity: nanG Position: 53 (position.label in template: 53.U) Reactivity: nanU Position: 54 (position.label in template: 54.U) Reactivity: nanU Position: 55 (position.label in template: 55.A) Reactivity: 0A Position: 56 (position.label in template: 56.C) Reactivity: 1C Position: 57 (position.label in template: 57.C) Reactivity: 0C Position: 58 (position.label in template: 58.G) Reactivity: nanG Position: 59 (position.label in template: 59.A) Reactivity: 0A Position: 60 (position.label in template: 60.A) Reactivity: 1A Position: 61 (position.label in template: 61.G) Reactivity: nanG Position: 62 (position.label in template: 62.C) Reactivity: 0C Position: 63 (position.label in template: 63.A) Reactivity: 0A Position: 64 (position.label in template: 64.U) Reactivity: nanU Position: 65 (position.label in template: 65.C) Reactivity: 0C Position: 66 (position.label in template: 66.U) Reactivity: nanU Position: 67 (position.label in template: 67.C) Reactivity: 0.5C Position: 68 (position.label in template: 68.C) Reactivity: 0.5C Position: 69 (position.label in template: 69.G) Reactivity: nanG Position: 70 (position.label in template: 70.A) Reactivity: 0.5A Position: 71 (position.label in template: 71.U) Reactivity: nanU Position: 72 (position.label in template: 72.G) Reactivity: nanG Position: 73 (position.label in template: 73.G) Reactivity: nanG Position: 74 (position.label in template: 74.U) Reactivity: nanU Position: 75 (position.label in template: 75.U) Reactivity: nanU Position: 76 (position.label in template: 76.A) Reactivity: 1A Position: 77 (position.label in template: 77.A) Reactivity: 1A Position: 78 (position.label in template: 78.A) Reactivity: 0.5A Position: 79 (position.label in template: 79.G) Reactivity: nanG Position: 80 (position.label in template: 80.C) Reactivity: 0C Position: 81 (position.label in template: 81.G) Reactivity: nanG Position: 82 (position.label in template: 82.A) Reactivity: 0A Position: 83 (position.label in template: 83.A) Reactivity: 0A Position: 84 (position.label in template: 84.A) Reactivity: 0.5A Position: 85 (position.label in template: 85.G) Reactivity: nanG Position: 86 (position.label in template: 86.A) Reactivity: 1A Position: 87 (position.label in template: 87.C) Reactivity: 1C Position: 88 (position.label in template: 88.G) Reactivity: nanG Position: 89 (position.label in template: 89.A) Reactivity: 0.5A Position: 90 (position.label in template: 90.G) Reactivity: nanG Position: 91 (position.label in template: 91.C) Reactivity: 0C Position: 92 (position.label in template: 92.G) Reactivity: nanG Position: 93 (position.label in template: 93.C) Reactivity: 0C Position: 94 (position.label in template: 94.C) Reactivity: 0C Position: 95 (position.label in template: 95.G) Reactivity: nanG Position: 96 (position.label in template: 96.U) Reactivity: nanU Position: 97 (position.label in template: 97.G) Reactivity: nanG Position: 98 (position.label in template: 98.A) Reactivity: 0.5A Position: 99 (position.label in template: 99.G) Reactivity: nanG Position: 100 (position.label in template: 100.C) Reactivity: 0C Position: 101 (position.label in template: 101.G) Reactivity: nanG Position: 102 (position.label in template: 102.U) Reactivity: nanU Position: 103 (position.label in template: 103.C) Reactivity: 0C Position: 104 (position.label in template: 104.G) Reactivity: nanG Position: 105 (position.label in template: 105.C) Reactivity: 0C Position: 106 (position.label in template: 106.G) Reactivity: nanG Position: 107 (position.label in template: 107.A) Reactivity: 0.5A Position: 108 (position.label in template: 108.U) Reactivity: nanU Position: 109 (position.label in template: 109.G) Reactivity: nanG Position: 110 (position.label in template: 110.A) Reactivity: 1A Position: 111 (position.label in template: 111.U) Reactivity: nanU Position: 112 (position.label in template: 112.U) Reactivity: nanU Position: 113 (position.label in template: 113.U) Reactivity: nanU Position: 114 (position.label in template: 114.C) Reactivity: 0C Position: 115 (position.label in template: 115.G) Reactivity: nanG Position: 116 (position.label in template: 116.C) Reactivity: 0C Position: 117 (position.label in template: 117.A) Reactivity: 0A Position: 118 (position.label in template: 118.A) Reactivity: 0A Position: 119 (position.label in template: 119.A) Reactivity: 1A Position: 120 (position.label in template: 120.C) Reactivity: 1C Position: 121 (position.label in template: 121.G) Reactivity: nanG Position: 122 (position.label in template: 122.A) Reactivity: 0A Position: 123 (position.label in template: 123.A) Reactivity: 0A Position: 124 (position.label in template: 124.A) Reactivity: 0.5A Position: 125 (position.label in template: 125.C) Reactivity: 0.5C Position: 126 (position.label in template: 126.C) Reactivity: 0C Position: 127 (position.label in template: 127.G) Reactivity: nanG Position: 128 (position.label in template: 128.C) Reactivity: 0C Position: 129 (position.label in template: 129.U) Reactivity: nanU Position: 130 (position.label in template: 130.G) Reactivity: nanG Position: 131 (position.label in template: 131.A) Reactivity: 0A Position: 132 (position.label in template: 132.U) Reactivity: nanU Position: 133 (position.label in template: 133.G) Reactivity: nanG Position: 134 (position.label in template: 134.A) Reactivity: 0A Position: 135 (position.label in template: 135.U) Reactivity: nanU Position: 136 (position.label in template: 136.G) Reactivity: nanG Position: 137 (position.label in template: 137.C) Reactivity: 0C Position: 138 (position.label in template: 138.U) Reactivity: nanU Position: 139 (position.label in template: 139.G) Reactivity: nanG Position: 140 (position.label in template: 140.A) Reactivity: 0A Position: 141 (position.label in template: 141.A) Reactivity: 1A Position: 142 (position.label in template: 142.G) Reactivity: nanG Position: 143 (position.label in template: 143.C) Reactivity: 0.5C Position: 144 (position.label in template: 144.U) Reactivity: nanU Position: 145 (position.label in template: 145.G) Reactivity: nanG Position: 146 (position.label in template: 146.G) Reactivity: nanG Position: 147 (position.label in template: 147.G) Reactivity: nanG Position: 148 (position.label in template: 148.G) Reactivity: nanG Position: 149 (position.label in template: 149.A) Reactivity: 1A Position: 150 (position.label in template: 150.U) Reactivity: nanU Position: 151 (position.label in template: 151.U) Reactivity: nanU Position: 152 (position.label in template: 152.C) Reactivity: nanC Position: 153 (position.label in template: 153.U) Reactivity: nanU Position: 154 (position.label in template: 154.G) Reactivity: nanG Position: 155 (position.label in template: 155.A) Reactivity: nanA Position: 156 (position.label in template: 156.A) Reactivity: nanA Position: 157 (position.label in template: 157.G) Reactivity: nanG Position: 158 (position.label in template: 158.A) Reactivity: nanA Position: 159 (position.label in template: 159.G) Reactivity: nanG Position: 160 (position.label in template: 160.U) Reactivity: nanU Position: 161 (position.label in template: 161.A) Reactivity: nanA Position: 162 (position.label in template: 162.A) Reactivity: nanA Position: 163 (position.label in template: 163.U) Reactivity: nanU Position: 164 (position.label in template: 164.U) Reactivity: nanU Position: 165 (position.label in template: 165.U) Reactivity: nanU Position: 166 (position.label in template: 166.C) Reactivity: nanC Position: 167 (position.label in template: 167.U) Reactivity: nanU Position: 168 (position.label in template: 168.G) Reactivity: nanG Position: 169 (position.label in template: 169.A) Reactivity: nanA Position: 170 (position.label in template: 170.U) Reactivity: nanU Position: 171 (position.label in template: 171.G) Reactivity: nanG Position: 172 (position.label in template: 172.A) Reactivity: nanA Position: 173 (position.label in template: 173.C) Reactivity: nanC Position: 174 (position.label in template: 174.C) Reactivity: nanC Position: 175 (position.label in template: 175.A) Reactivity: nanA Position: 176 (position.label in template: 176.A) Reactivity: nanA Position: 177 (position.label in template: 177.C) Reactivity: nanC Position: 178 (position.label in template: 178.C) Reactivity: nanC Position: 179 (position.label in template: 179.G) Reactivity: nanG Position: 180 (position.label in template: 180.U) Reactivity: nanU Position: 181 (position.label in template: 181.C) Reactivity: nanC Position: 182 (position.label in template: 182.U) Reactivity: nanU Position: 183 (position.label in template: 183.G) Reactivity: nanG Position: 184 (position.label in template: 184.G) Reactivity: nanG Position: 185 (position.label in template: 185.U) Reactivity: nanU Position: 186 (position.label in template: 186.3')3' 10 20 30 50 100 150


rpsF-priB-rpsR-rplI



Position: 346-490, Conformation: #1







Retained alignments:


   NC_003910.7       UUAUAACGAUG.UUGUUAUUCGUAAC.AUGAUUAUGCGUACUAAAGACGCGGUAACUGA................................AGCA.UCGCC..AAUG......GC...UGC.UGCUAAA..GA............AGAGC....gucgugacgaucgccgcgaa...............................guuaagaaagauguugcugcuGC.GCCAG.....uU..GA.AG.C..UA......AAGAAGA......CUC............U.GUU.G......A.A...G.AG.A...A...A..UC...UGA.........AGAAg..........cuGC......UA..G..CG.AAGAA.U.A..A.G............U..A.A.UCUG.U.G...AUU.G--.........................................-.-.-.-
   NC_004347.2       UUUCAACGACG.CAGUUCUGCGUAAC.AUGGUAAUGCGUACUAAAGGUGCCAUCACCGA................................AGCA.UCUCC..AAUG......GC...GAA.AGCUAAA..GA............UGAGC....gcga...............................................................uucacGU.CGUGG......C..CC.AG.C..UG......GCGACCG......CUCa.........uaU.GAU.G......A.A...G.CU.A...A...C..GC...UGA.........AGAAa..........ucGC......UG..AguAA.GUUUA.U.C..U.G............U..G.A.CCAC.C.A...AUA.ACU.........................................U.G.G.U
   NC_005126.1       CUUCAACGAUG.CCGUUAUCCGCAGC.AUGAUUAUGCGCGUUAAGCACGCGGUAACUGA................................AGCA.UCUCC..AAUG......GU...UAA.AGCCAAA..GA............UGAAC....gucg...............................................................cagccGU.GACUAc...ucU..CU.GG.A..AG......ACGCCAA......UAU............G.---.G......A.U...G.CU.GaagA...A..GC...UGG.........GGAU.............UC......UG..A..AG.AGUAA.U.A..A.Cu..........gU..G.A.CAAC.U.A...AUC.GUU.........................................U.G.G.U
   NC_005966.1       UUAUAACGAUG.CAAUCAUUCGUAAC.AUCAUCAUCCGUCGUGAACACGCAAUCACUGA................................AGAA.UCUUU..ACUU......GC...UAA.AAGUGCU..GA............AGAAA....aacgugcgcg...................................................uaaagcucaacGU.GAAGA......A..GC.AC.A..A-......-CAAAUU......CA-............A.GAU.U......C.U...-.--.-...-...-..--...-GC.........UGAA.............GC......UU..A..AG.GAGAA.C.-..-.A............U..C.A.AUGG.C.A...CGU.UUU.........................................U.A.C.C
   NC_007204.1       UUAUAACGACG.CGAUCAUUCGUAGU.CUAGUUAUGCGCCGUGACGACGCUGUCACUGA................................AGAG.UCGCA..GUUA......GC...UAA.GAAUGCC..GA............UGAAA....aacgugcacgcaaagcaacuacucgucgucc.........agaucgugaugauagcgacgacaacgaccacaGU.GAAGA......C..UA.AU.U..AA......AGGAGAA......UAC............U.CAU.G......G.C...A.--.-...-...-..--...---.........CGUU.............UC......UA..U..CG.-----.-.-..-.-............-..-.-.----.-.-...---.---.........................................-.-.-.-
   NC_007712.1       CUUCAAUGACG.CCGUUAUCCGCAGC.AUGAUCAUGCGCGUUAAGCACGCGGUGACUGA................................AGCG.UCUCC..GAUG......GU...UAA.AGCGAAA..GA............UGAAC....gccgcg............................................................agcgccGU.GAAGA......U..UU.CG.C..UA......CUGAAAC......CAA............C.GAA.G......A.C...U.CU.G...A...U..GC...UGG.........GGAU.............UC......UG..A..AG.AGUAA.U.C..G.Au.........gaU..G.A.CGGC.G.A...ACC.GUC.........................................-.-.-.-
   NC_007912.1       UUACAACGACG.CUGUAUUGCGUAAC.AUGAUUAUCCGUUGUGAUGAAGCCGUGACUGA................................AGAG.UCGCC..AAUC......AU...GAA.AGCGGAA..AA............CGAGA....gccgcgagcgccgcaac......................................cgcgccgagcgucgugcUC.-AAGA......-..--.AG.C..CG......AAUCAGC......UGC............U.GAA.G......A.A...G.UU.G...A...A..GA...CGA.........AGAG.............UC......UU..U..AG.ACGAA.G.A.aG.C............C..G.A.UGAU.G.A...AUC.AUC.........................................U.G.A.A
   NC_007954.1       UUUCAACGACG.CUGUUCUGCGUAAC.AUGGUAAUGCGCACUAAAGUUGCCGUUACUGA................................AGCU.UCUCC..UAUG......GC...AAA.AGCAAGA..GA............CGAGC....gugauucacguc................................................guucaccuucugAU.GACCG......U..AU.AG.A..AG......AAGAAAG......CGC............U.GAA.G......A.-...-.--.-...-...-..--...---.........AAAC.............GC......UG..A..AU.AAUUU.A.C..U.C............U..-.G.UGAA.U.A...ACC.ACU.........................................U.A.U.C
   NC_007963.1       UUUCAACGAUG.CCAUCAUCCGCAGC.CUGGUGGUGCGUUGCAAAGAGGCGAUCACCGA................................AGCG.UCUCC..GAUG......AU...GAA.GCCGGCU..GA............AGAAA....agccgcgucgucgugaagagaaaa........................gcgagcggccgcgcaccgagcgcaAC.GAAGA......A..GC.CC.C..--......-CGCUGA......CGC............C.GAA.G.....cC.A...A.CU.G...A...U..C-...--C.........GAUC.............UC......UG..G..AG.GAUAA.C.C..C.A............U..G.G.CACG.C.U...UUU.UCC.........................................G.-.-.-
   NC_008345.1       UUUCAACGACG.CUGUUCUGCGUAAC.AUGGUAAUGCGCACUAAAGCUGCCGUUACUGA................................AGCU.UCUCC..UAUG......GC...AAA.AGCAAGA..GA............CGAGC....gugauucacguc................................................guucaccuucugAU.GACCG......U..AA.UG.U..AG......AAGAAAG......CGC............U.GAA.G......A.-...-.--.-...-...-..--...---.........AAAC.............GC......UG..A..AU.A---A.U.U..U.U............U..U.G.UGAA.U.A...AUC.ACU.........................................U.A.A.U
   NC_008700.1       UUUCAACGACG.CUGUUCUGCGUAGC.AUGGUAAUGCGCACCAAGGGUGCCAUCACCGA................................AGCC.UCUCC..AAUG......GC...UAA.AGCUAAA..GA............UGAGC....gugaugcucgucgug..........................................cugccaucagugagcGC.UCUUC......U..GA.GG.C..UG......AUGAAGU......CGA............A.GAA.A......A.C...G.CU.G...-...-..--...--A.........AGAA.............UC......UG..C..CG.AGUAA.U.U..U.Cugu......uugU..G.A.CCGC.A.A...ACU.CUU.........................................U.G.G.U
   NC_008709.1       UUUCAACGAUU.CAGUGAUCCGUAAC.AUGAUCAUGCGUACUAAAACUGCUGUGACUGA................................AGUU.UCUGU..AGUG......GC...AAA.AGCAAGA..GA............AGAGC....guguugaac......................................................gugcuccucGU.GCUCC......A..CG.UC.C..AG......AAGUGAA......AGC............A.GAA.C......C.A...G.AA.G...C...A..GA...AGC.........AACA.............GC......UG..A..AG.CAUAA.G.C..U.A...........cU..U.A.GU--.-.-...---.---.........................................-.-.-.-
   NC_009092.1       UUUCAACGACG.CUGUUCUUCGUAGC.AUGGUUAUGCGUACCAAGGGUGCCAUCACCGA................................AGCU.UCUCC..AAUG......GC...UAA.AGCGAAA..GA............CGAGC....gugaagcac......................................................gucguucuaGC.GAAGAg...cgU..UC.AG.C..UG......UAGAAGC......UGAagu......aucU.GAA.G......A.A...G.CC.G...-...-..-C...UGA.........AAAC.............GC......AG..C..AG.AGUAA.G.U..U.Uau.......uugU..G.G.CCAC.C.A...AUC.ACU.........................................U.G.G.U
   NC_009792.1       CUUCAACGAUG.CCGUUAUCCGUAGC.AUGGUAAUGCGUACUAAGCACGCUGUUACCGA................................AGCA.UCUCC..GAUG......GU...UAA.AGCGAAA..GA............CGAGC....gccgug............................................................agcgucGC.GAUGA......U..UU.CG.C..AA......ACGAAAC......CGC............A.GAU.G......A.U...G.CA.G...A...U..GC...UGG.........GGAU.............UC......UG..A..AG.AGUAA.U.U..U.C............U..G.A.UGAC.C.A...ACC.GUC.........................................U.G.G.C
   NC_009831.1       UUUCAACGACG.CUGUUCUGCGUAGC.AUGGUUAUGCGUACUAAAGCAGCCAUCACUGA................................AGCA.UCUCC..AAUG......GC...UAA.AGCGAAA..GA............CGAGC....gugauucacgucguucuagcga............................aggcgagcgucguagugcgccu--.---GC......U..GA.AG.C..AA......CUGAAGA......AGU............U.AAA.G......A.A...A.CC.G...C...U..GA...AAA.........AGCA.............GC......UG..A..GU.AAGUU.U.U..U.Cu..........gU..G.G.CCAC.A.A...ACC.AUU.........................................U.G.G.U
   NC_009901.1       UUUCAACGACG.CUGUUUUGCGUAGC.AUGGUUAUGCGUACUAAAGCUGCCAUCACUGA................................AGCA.UCUCC..AAUG......GC...UAA.AGCUAAA..GA............CGAGC....gcgacacacgucguucau....................................cugaagagcgugcaccucGU.GCAGA......-..--.AG.C..UA......CUGAAGA......AGC............U.GAA.G......A.A...A.--.-...G...C..GC...UGA.........AAAC.............AC......UG..C..UG.AGUAA.G.U..U.Uuu.......uugU..G.A.CCAC.A.A...ACA.AUU.........................................U.G.G.U
   NC_010334.1       UUUCAACGACG.CUGUUUUGCGUAGC.AUGGUUAUGCGUACUAAAGCUGCCAUCACUGA................................AGCA.UCUCC..AAUG......GC...UAA.AGCUAAA..GA............CGAGC....gcgauacacgucguucau....................................cugaagagcgugcaccucGU.GCAGA......A..GC.UG.C..UG......AAGAAGU......UGA............A.GAA.A......G.C...G.CU.G...-...-..--...--A.........AAAC.............AC......UG..C..UG.AGUAA.G.U..U.Uuu.......uugU..G.A.CCAC.A.A...ACA.AUU.........................................U.G.G.U
   NC_010506.1       UUUCAACGACG.CUGUACUGCGUAAC.AUGGUUAUGCGUACUAAAGCUGCUAUCACUGA................................AGCA.UCUCC..AAUG......GC...UAA.AGCUAAA..GA............CGAGC....gugauucacgccgugcuagcg.............................aaggcgagcgucguagugcgcc--.--AGC......U..GA.AG.C..AA......CUGAAGA......AGU............U.ACA.G......A.A...G.CC.G...C...U..GA...AAA.........AACA.............GC......UG..A..GU.AAGUU.U.U..U.Uu..........gU..G.G.CCAC.A.A...ACC.AUU.........................................U.G.G.U
   NC_010519.1       UUACAACGACG.CAGUUCUUCGUAAC.GUAAUUAUUCGUACUAAGCACGCCGUAACAGA................................AGCG.UCCCC..AAUG......GU...UAA.AGCACGU..GA............AGAGC............................................................................GU.---AA......G..CC.UU.U..AA......CUGAAGU......UGA............A.AAC.A......A.C...G.--.-...A...U..UU...UGA.........GGAU.............GC......UG..A..AG.AGUAA.U.U..U.A...........gA..G.G.UUGA.U.A...AUC.GUU.........................................U.U.U.C
   NC_010554.1       CUUCAAUGAUG.CCGUGCUCCGCAAC.AUGAUCAUGCGUACUAAACACGCAGUGACUGA................................AGCU.UCACC..AAUG......GU...UAA.AGCAAAA..GA............CGAAC....gucgucg.........................................................cgauguugCU.GAAGA......U..CU.UG.A..UG......AAGAAGA......AGU............U.GAU.G......A.U...G.UA.G...-...-..-C...AGA.........GGAU.............UC......UG..A..AG.AGUAA.U.U..A.Gug.......uugU..G.A.CGGC.U.A...AUC.GAU.........................................U.A.G.U
   NC_011312.1       UUACAACGAUG.CUGUUCUACGUAAC.AUGAUCAUGCGUACUAAAGCUGCGAUCACUGA................................GCCA.UCAGU..AAUG......AU...GAA.AGCUAAA..GA............AGAGC....guacug............................................................cuaagcGU.GAAGA......C..--.-G.C..UG......CACCACG......CGC............U.GAA.G......A.-...-.--.-...-...-..--...---.........AGCU.............GC......UG..C..UG.AGUAA.U.U..G.Au..........uU..G.A.UGAC.C.A...AUC.GAU.........................................U.G.G.A
   NC_011566.1       UUUCAACGACG.CUGUUUUGCGUAGC.AUGGUUAUGCGUACUAAAGCUGCCAUCACUGA................................AGCA.UCUCC..AAUG......GC...UAA.AGCUAAA..GA............CGAAC....gcgauacacgucguucau....................................cugaagagcgugcaccucGU.GCAGA......-..--.AG.C..UA......CUGAAGA......AGU............U.AAA.G......A.AagcG.CU.G...A...A..AA...CAC.........AGCU.............G-......AG..U..AA.GUUUU.U.U..U.G............U..G.A.CCAC.A.A...ACA.AUU.........................................U.G.G.U
   NC_012560.1       CUACAACGACG.CCGUCAUCCGCAAC.CUGGUCAUCCGUCGCGACGAAGCCAUCACU--................................GGUC.AGUCCgaGAUG......CU...CAA.GGCCGAA..GA............AAACC....gcagcgagcgucgcgagcgucgc.........................gagcgucccgagcacgguggccac--.GAAGG......C..CU.CG.A..UG......GCG---A......CAG............C.GAC.A......A.G...G.CU.G...A...C..GA...GUAauu...cccGGAUc...........uAU......UG..A..GG.AGCAA.U.U..C.C............C..-.-.AUGG.C.A...CGU.UUC.........................................U.U.C.C
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   NZ_LT906479.1     CUUCAACGACG.CCGUUAUCCGCAGC.AUGGUUAUGCGCGUUAAGCACGCGGUAACUGA................................AGCA.UCUCC..GAUG......GU...UAA.AGCGAAA..GA............CGAAC....gucgugg.........................................................cgaucgccGC.GAAGA......C..UU.CG.C..UA......ACGAAAC......CGC............A.GAU.G......A.U...G.CA.G...A...U..GC...UGG.........GGAU.............UC......UG..A..AG.AGUAA.U.U..G.Ccg.......ccgU..G.A.CGGC.U.A...AUC.GUC.........................................U.G.G.U
   NZ_OU015521.1     CUAUAACGAUG.CUGUGAUUCGUAAU.UUAAUUUUAAAACGCAAUCAUGCUAUUACCGA................................GCUU.UCACU..CAUU......AU...GCA.AGGCGCU..GA............ACAAA....cgaaauuuuugaaaga.......................................gaagcuaaaagucuucgUU.GAAGA......A..AG.GA.C..--......-------......---............U.GUU.G......A.A...A.--.-...A...A..CU...UGA.........AGAA.............AC......CU..A..AG.AGGAA.U.A..U.A............U..G.U.CAUU.U.C...AUC.GCA.........................................A.A.A.A
   NZ_OU594967.1     UUUCAACGAUG.CCGUUAUCCGUAAC.AUGAUUAUGCGUAAAAAACACGCUGAAACUGA................................AGCA.UCACC..AAUU......GC...UAA.AGCAAAA..GA............UGAUC....gcccag............................................................cucgucGU.GACCA......U..CG.UG.A..AG......ACGCUCC......AGC............A.A--.G......A.-...U.CU.C...A...U..UC...AGA.........UGAC.............UC......UG..A..AG.AGAAU.G.U..G.G............A..G.C.AGAG.C.G...AAGaAGC.........................................A.G.C.U


   Structure         (((((..((...((........((((.((.((((.(((..........(((........................................))).............................((((((...................((............................................................................))............)..)).)).).......................)))............).)))........).)...).)).)...........................))...............))......))..)..))....................................((.(.(...................................................).).).)


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rpsF-priB-rpsR-rplI



Position: 346-490, Conformation: #1







97% 90% 75% 50% Nucleotide present N N N Nucleotide identify E < 0.1 Base-pair covariation E < 0.05 Helix-level covariation 97% 90% 75%

Y U Y A A C G A Y G C R U Y U C G Y A R C U G R U Y R U C G Y Y R A R G C R U A C Y G A R C U C C Y A U R Y A A R R R G A G A R R R R R R R R R G C Y G R G R Y 5'