rpsF-priB-rpsR-rplI



Position: 346-490, Conformation: #0







DMS reactivity > 1.0 0.0 0.4 0.7 G/U/No data
Position: 0 (position.label in template: 0.5')5' Position: 1 (position.label in template: 1.C) Reactivity: nanC Position: 2 (position.label in template: 2.G) Reactivity: nanG Position: 3 (position.label in template: 3.C) Reactivity: nanC Position: 4 (position.label in template: 4.U) Reactivity: nanU Position: 5 (position.label in template: 5.U) Reactivity: nanU Position: 6 (position.label in template: 6.C) Reactivity: nanC Position: 7 (position.label in template: 7.A) Reactivity: nanA Position: 8 (position.label in template: 8.A) Reactivity: nanA Position: 9 (position.label in template: 9.C) Reactivity: nanC Position: 10 (position.label in template: 10.G) Reactivity: nanG Position: 11 (position.label in template: 11.A) Reactivity: nanA Position: 12 (position.label in template: 12.U) Reactivity: nanU Position: 13 (position.label in template: 13.G) Reactivity: nanG Position: 14 (position.label in template: 14.C) Reactivity: nanC Position: 15 (position.label in template: 15.C) Reactivity: nanC Position: 16 (position.label in template: 16.G) Reactivity: nanG Position: 17 (position.label in template: 17.U) Reactivity: nanU Position: 18 (position.label in template: 18.U) Reactivity: nanU Position: 19 (position.label in template: 19.A) Reactivity: nanA Position: 20 (position.label in template: 20.U) Reactivity: nanU Position: 21 (position.label in template: 21.C) Reactivity: nanC Position: 22 (position.label in template: 22.C) Reactivity: nanC Position: 23 (position.label in template: 23.G) Reactivity: nanG Position: 24 (position.label in template: 24.C) Reactivity: nanC Position: 25 (position.label in template: 25.A) Reactivity: nanA Position: 26 (position.label in template: 26.G) Reactivity: nanG Position: 27 (position.label in template: 27.C) Reactivity: nanC Position: 28 (position.label in template: 28.A) Reactivity: nanA Position: 29 (position.label in template: 29.U) Reactivity: nanU Position: 30 (position.label in template: 30.G) Reactivity: nanG Position: 31 (position.label in template: 31.G) Reactivity: nanG Position: 32 (position.label in template: 32.U) Reactivity: nanU Position: 33 (position.label in template: 33.U) Reactivity: nanU Position: 34 (position.label in template: 34.A) Reactivity: nanA Position: 35 (position.label in template: 35.U) Reactivity: nanU Position: 36 (position.label in template: 36.G) Reactivity: nanG Position: 37 (position.label in template: 37.C) Reactivity: 0C Position: 38 (position.label in template: 38.G) Reactivity: nanG Position: 39 (position.label in template: 39.U) Reactivity: nanU Position: 40 (position.label in template: 40.A) Reactivity: 1A Position: 41 (position.label in template: 41.C) Reactivity: 0C Position: 42 (position.label in template: 42.C) Reactivity: 0.5C Position: 43 (position.label in template: 43.A) Reactivity: 0.5A Position: 44 (position.label in template: 44.A) Reactivity: 1A Position: 45 (position.label in template: 45.G) Reactivity: nanG Position: 46 (position.label in template: 46.C) Reactivity: 1C Position: 47 (position.label in template: 47.A) Reactivity: 0A Position: 48 (position.label in template: 48.C) Reactivity: 0C Position: 49 (position.label in template: 49.G) Reactivity: nanG Position: 50 (position.label in template: 50.C) Reactivity: 0C Position: 51 (position.label in template: 51.U) Reactivity: nanU Position: 52 (position.label in template: 52.G) Reactivity: nanG Position: 53 (position.label in template: 53.U) Reactivity: nanU Position: 54 (position.label in template: 54.U) Reactivity: nanU Position: 55 (position.label in template: 55.A) Reactivity: 0.5A Position: 56 (position.label in template: 56.C) Reactivity: 0C Position: 57 (position.label in template: 57.C) Reactivity: 0C Position: 58 (position.label in template: 58.G) Reactivity: nanG Position: 59 (position.label in template: 59.A) Reactivity: 1A Position: 60 (position.label in template: 60.A) Reactivity: 0.5A Position: 61 (position.label in template: 61.G) Reactivity: nanG Position: 62 (position.label in template: 62.C) Reactivity: 0C Position: 63 (position.label in template: 63.A) Reactivity: 0A Position: 64 (position.label in template: 64.U) Reactivity: nanU Position: 65 (position.label in template: 65.C) Reactivity: 0C Position: 66 (position.label in template: 66.U) Reactivity: nanU Position: 67 (position.label in template: 67.C) Reactivity: 0C Position: 68 (position.label in template: 68.C) Reactivity: 0C Position: 69 (position.label in template: 69.G) Reactivity: nanG Position: 70 (position.label in template: 70.A) Reactivity: 1A Position: 71 (position.label in template: 71.U) Reactivity: nanU Position: 72 (position.label in template: 72.G) Reactivity: nanG Position: 73 (position.label in template: 73.G) Reactivity: nanG Position: 74 (position.label in template: 74.U) Reactivity: nanU Position: 75 (position.label in template: 75.U) Reactivity: nanU Position: 76 (position.label in template: 76.A) Reactivity: 0.5A Position: 77 (position.label in template: 77.A) Reactivity: 1A Position: 78 (position.label in template: 78.A) Reactivity: 1A Position: 79 (position.label in template: 79.G) Reactivity: nanG Position: 80 (position.label in template: 80.C) Reactivity: 0C Position: 81 (position.label in template: 81.G) Reactivity: nanG Position: 82 (position.label in template: 82.A) Reactivity: 0A Position: 83 (position.label in template: 83.A) Reactivity: 0A Position: 84 (position.label in template: 84.A) Reactivity: 0.5A Position: 85 (position.label in template: 85.G) Reactivity: nanG Position: 86 (position.label in template: 86.A) Reactivity: 0.5A Position: 87 (position.label in template: 87.C) Reactivity: 0.5C Position: 88 (position.label in template: 88.G) Reactivity: nanG Position: 89 (position.label in template: 89.A) Reactivity: 1A Position: 90 (position.label in template: 90.G) Reactivity: nanG Position: 91 (position.label in template: 91.C) Reactivity: 0C Position: 92 (position.label in template: 92.G) Reactivity: nanG Position: 93 (position.label in template: 93.C) Reactivity: 0C Position: 94 (position.label in template: 94.C) Reactivity: 0C Position: 95 (position.label in template: 95.G) Reactivity: nanG Position: 96 (position.label in template: 96.U) Reactivity: nanU Position: 97 (position.label in template: 97.G) Reactivity: nanG Position: 98 (position.label in template: 98.A) Reactivity: 1A Position: 99 (position.label in template: 99.G) Reactivity: nanG Position: 100 (position.label in template: 100.C) Reactivity: 0C Position: 101 (position.label in template: 101.G) Reactivity: nanG Position: 102 (position.label in template: 102.U) Reactivity: nanU Position: 103 (position.label in template: 103.C) Reactivity: 0C Position: 104 (position.label in template: 104.G) Reactivity: nanG Position: 105 (position.label in template: 105.C) Reactivity: 0C Position: 106 (position.label in template: 106.G) Reactivity: nanG Position: 107 (position.label in template: 107.A) Reactivity: 1A Position: 108 (position.label in template: 108.U) Reactivity: nanU Position: 109 (position.label in template: 109.G) Reactivity: nanG Position: 110 (position.label in template: 110.A) Reactivity: 1A Position: 111 (position.label in template: 111.U) Reactivity: nanU Position: 112 (position.label in template: 112.U) Reactivity: nanU Position: 113 (position.label in template: 113.U) Reactivity: nanU Position: 114 (position.label in template: 114.C) Reactivity: 0C Position: 115 (position.label in template: 115.G) Reactivity: nanG Position: 116 (position.label in template: 116.C) Reactivity: 0C Position: 117 (position.label in template: 117.A) Reactivity: 1A Position: 118 (position.label in template: 118.A) Reactivity: 1A Position: 119 (position.label in template: 119.A) Reactivity: 0.5A Position: 120 (position.label in template: 120.C) Reactivity: 0.5C Position: 121 (position.label in template: 121.G) Reactivity: nanG Position: 122 (position.label in template: 122.A) Reactivity: 1A Position: 123 (position.label in template: 123.A) Reactivity: 1A Position: 124 (position.label in template: 124.A) Reactivity: 0A Position: 125 (position.label in template: 125.C) Reactivity: 0C Position: 126 (position.label in template: 126.C) Reactivity: 0C Position: 127 (position.label in template: 127.G) Reactivity: nanG Position: 128 (position.label in template: 128.C) Reactivity: 0C Position: 129 (position.label in template: 129.U) Reactivity: nanU Position: 130 (position.label in template: 130.G) Reactivity: nanG Position: 131 (position.label in template: 131.A) Reactivity: 0A Position: 132 (position.label in template: 132.U) Reactivity: nanU Position: 133 (position.label in template: 133.G) Reactivity: nanG Position: 134 (position.label in template: 134.A) Reactivity: 0A Position: 135 (position.label in template: 135.U) Reactivity: nanU Position: 136 (position.label in template: 136.G) Reactivity: nanG Position: 137 (position.label in template: 137.C) Reactivity: 0C Position: 138 (position.label in template: 138.U) Reactivity: nanU Position: 139 (position.label in template: 139.G) Reactivity: nanG Position: 140 (position.label in template: 140.A) Reactivity: 1A Position: 141 (position.label in template: 141.A) Reactivity: 1A Position: 142 (position.label in template: 142.G) Reactivity: nanG Position: 143 (position.label in template: 143.C) Reactivity: 0C Position: 144 (position.label in template: 144.U) Reactivity: nanU Position: 145 (position.label in template: 145.G) Reactivity: nanG Position: 146 (position.label in template: 146.G) Reactivity: nanG Position: 147 (position.label in template: 147.G) Reactivity: nanG Position: 148 (position.label in template: 148.G) Reactivity: nanG Position: 149 (position.label in template: 149.A) Reactivity: 0.5A Position: 150 (position.label in template: 150.U) Reactivity: nanU Position: 151 (position.label in template: 151.U) Reactivity: nanU Position: 152 (position.label in template: 152.C) Reactivity: nanC Position: 153 (position.label in template: 153.U) Reactivity: nanU Position: 154 (position.label in template: 154.G) Reactivity: nanG Position: 155 (position.label in template: 155.A) Reactivity: nanA Position: 156 (position.label in template: 156.A) Reactivity: nanA Position: 157 (position.label in template: 157.G) Reactivity: nanG Position: 158 (position.label in template: 158.A) Reactivity: nanA Position: 159 (position.label in template: 159.G) Reactivity: nanG Position: 160 (position.label in template: 160.U) Reactivity: nanU Position: 161 (position.label in template: 161.A) Reactivity: nanA Position: 162 (position.label in template: 162.A) Reactivity: nanA Position: 163 (position.label in template: 163.U) Reactivity: nanU Position: 164 (position.label in template: 164.U) Reactivity: nanU Position: 165 (position.label in template: 165.U) Reactivity: nanU Position: 166 (position.label in template: 166.C) Reactivity: nanC Position: 167 (position.label in template: 167.U) Reactivity: nanU Position: 168 (position.label in template: 168.G) Reactivity: nanG Position: 169 (position.label in template: 169.A) Reactivity: nanA Position: 170 (position.label in template: 170.U) Reactivity: nanU Position: 171 (position.label in template: 171.G) Reactivity: nanG Position: 172 (position.label in template: 172.A) Reactivity: nanA Position: 173 (position.label in template: 173.C) Reactivity: nanC Position: 174 (position.label in template: 174.C) Reactivity: nanC Position: 175 (position.label in template: 175.A) Reactivity: nanA Position: 176 (position.label in template: 176.A) Reactivity: nanA Position: 177 (position.label in template: 177.C) Reactivity: nanC Position: 178 (position.label in template: 178.C) Reactivity: nanC Position: 179 (position.label in template: 179.G) Reactivity: nanG Position: 180 (position.label in template: 180.U) Reactivity: nanU Position: 181 (position.label in template: 181.C) Reactivity: nanC Position: 182 (position.label in template: 182.U) Reactivity: nanU Position: 183 (position.label in template: 183.G) Reactivity: nanG Position: 184 (position.label in template: 184.G) Reactivity: nanG Position: 185 (position.label in template: 185.U) Reactivity: nanU Position: 186 (position.label in template: 186.3')3' 10 20 30 50 100 150


rpsF-priB-rpsR-rplI



Position: 346-490, Conformation: #0







Retained alignments:


   NC_003910.7       UUAUAACGAUGUUGUU..AUUCGUAACA...UGAUUAUGCGUACUAAAG.................................................AC.GCGGUAACUGAAGCAUCGCCA...AUGGC......UGC...UGCUAAA...GA.........AGA...GCGUCGU.....................................................gac............................................................gaucGC.CGC.GA.AGU............U.AAGA..AA.G..AUG...UU...GC.U.G..C......UG..CGcca...guuGA.A...G.CU...AA.A............G...-.-...-.-.........----.-..----..--......AA...GAC.U....C.U.G.............uUG....AAG.AG.AA...A.UCUGA........A.-.-.-
   NC_004347.2       UUUCAACGACGCAGUU..CUGCGUAACA...UGGUAAUGCGUACUAAAG.................................................GU.GCCAUCACCGAAGCAUCUCCA...AUGGC......GAA...AGCUAAA...GA.........UGA...GCGCGAU.....................................................u................................................................ca--.CGU.CG.UGG............C.CCAG..CU.G..GCG...AC..cGC.U.C..Au....aUG..AU.........GA.A...G.CU...AA.C............G...C.U...G.A........aGAAA.UcgCUGA..GU......AA...GUU.U....A.U.Cu............gUG....ACC.AC.CA...A.UAACU........U.G.G.U
   NC_004603.1       UUUCAACGAUGCAGUU..CUACGUAACA...UGAUCAUGCGUACUAAAG.................................................CA.GCGAUCACUGAGCAAUCUAUC...AUGCU......UAA...GCAAAAA...GA.........AGA...GCGUGC-.....................................................uc..............................................................cacGU.CGU.GA.AGA............G.CGUU..CU.-..--G...AA...GC.U.A..A......GC..CU.........GA.A...G.CU...AA.A............U...C.A...G.A.........---A.G..CUGC..UG......AG...UAA.G....U.U.U..............UGu..uAUG.AC.CA...A.CCGAA........U.G.G.A
   NC_005126.1       CUUCAACGAUGCCGUU..AUCCGCAGCA...UGAUUAUGCGCGUUAAGC.................................................AC.GCGGUAACUGAAGCAUCUCCA...AUGGU......UAA...AGCCAAA...GA.........UGA...ACGUCGC.......................................................................................................................aGC.CGU.GA.CUAc.........ucU.CUGG..AA.G..ACG...CC...AA.U.A..U......GG..AU.........GC.U...G.AA...GA.A............G...C.U...G.G.........GGAU.U..CUGA..AG......AG...UAA.U....A.A.Cu............gUG....ACA.AC.UA...A.UCGUU........U.G.G.U
   NC_005966.1       UUAUAACGAUGCAAUC..AUUCGUAACA...UCAUCAUCCGUCGUGAAC.................................................AC.GCAAUCACUGAAGAAUCUUUA...CUUGC......UAA...AAGUGCU...GA.........AGA...AAAAC--.....................................................gugcgcgu..................................................aaagcucaa--.CGU.GA.AGA............A.GCAC..--.-..---...AA...CA.A.A..U......UC..AA.........GA.U...U.CU...GC.U............G...-.-...A.A.........GC--.-..UUAA..GG......AG...AAC.A....U.C.A..............-A....UGG.CA.CG...U.UUUUA.......cC.G.-.-
   NC_007645.1       UUUUAACGACGCCAUC..CUCCGUGACC...UGGUUAUUCGUCGUAAGG.................................................AU.GCUGUGACCGAAGUGUCGCCC...AU---......CAA...AGCAGCU...GA.........---...GUCCC--.....................................................gcgaacagcgcgcuccucguggc....................gaagaucgucccgcccgcgucguu--.---.GC.UGA............C.GACG..UU.G..ACG...AC...UC.U.G..A......CG..AC.........GA.U...A.CU...GA.C............G...A.C...G.A.........AGAC.A..GCAA..CGac..gaAU...AAG.U....U.A.U..............AG....GAG.GC.UA...A.CCA--........U.G.G.C
   NC_007712.1       CUUCAAUGACGCCGUU..AUCCGCAGCA...UGAUCAUGCGCGUUAAGC.................................................AC.GCGGUGACUGAAGCGUCUCCG...AUGGU......UAA...AGCGAAA...GA.........UGA...ACGCCGC.....................................................ga...............................................................gcGC.CGU.GA.AGA............U.UUCG..CU.A..CUG...AA...AC.C.A..A......CG..AA.........GA.C...U.CU...GA.U............G...C.U...G.G.........GGAU.U..CUGA..AG......AG...UAA.U....C.G.A..............UG....AUG.AC.GG...-.-CGAA........C.C.G.U
   NC_007912.1       UUACAACGACGCUGUA..UUGCGUAACA...UGAUUAUCCGUUGUGAUG.................................................AA.GCCGUGACUGAAGAGUCGCCA...AUCAU......GAA...AGCGGAA...AA.........CGA...GAGCCGC.....................................................gagcgccgcaa.............................................ccgcgccgagcGU.CGU.GC.UCA............A.GAAG..CC.G..AAU...CA...GC.U.G..C......UG..AA.........GA.A...G.UU...GA.A............G...A.C...G.A.........AGAG.U..CUUU..AG......AC...GAA.G...aA.G.C..............CG....AUG.AU.GA...A.UCAUC........U.G.A.A
   NC_007954.1       UUUCAACGACGCUGUU..CUGCGUAACA...UGGUAAUGCGCACUAAAG.................................................UU.GCCGUUACUGAAGCUUCUCCU...AUGGC......AAA...AGCAAGA...GA.........CGA...GCGUGAU.....................................................ucacgu......................................................cguucacCU.UCU.GA.UGA............C.CGUA..--.-..---...UA...GA.A.G..A......AG..AA.........AG.C...G.CU...GA.A............G...-.-...-.A.........AAAC.G..CUGA..AU......AA...UUU.A....C.U.C..............UG....-UG.AA.UA...A.CCACU........U.A.U.C
   NC_007963.1       UUUCAACGAUGCCAUC..AUCCGCAGCC...UGGUGGUGCGUUGCAAAG.................................................AG.GCGAUCACCGAAGCGUCUCCG...AUGAU......GAA...GCCGGCU...GA.........AGA...AA-----.....................................................agccgcgucguc..........................................gugaagagaaaag--.---.--.---cg.......agcG.GCCG.cGC.A..CCG...AG...CG.C.A..A......CG..AA.........GA.A...G.CC...CC.C............G...C.U...G.A.........CG--.-..CCGA..AG......CC...AAC.U...gA.U.C..............CG....AUC.UC.U-...-.--GGA........G.-.-.-
   NC_008027.1       CUACAACGAUGCCGUG..AUCCGUAACC...UGGUCAUCCGUCGCGACG.................................................AA.GCCGUUACCGGCCCGUCCGAG...AUGCU......CAA...GGCCGAA...GA.........GAA...CCG----.....................................................cagcgagcgccgugagcguc...........................gcgaacguccugagcaugcu--.---.GA.UGG............C.GCCG..AA.G..GCG...AC...GA.C.A..G......CA..AU.........GA.C...A.GC...GA.Caac......agcG...-.-...-.A.........UAAC.G..CUGA..CG......AG...UAA.U....C.C.A..............CG....--G.AC.CU...U.UUG--........A.G.G.A
   NC_008340.1       GUUCAACGACGCCGUU..AUCCGCAACA...UGGUCCUC----------ggucgc.....gacgagg...............................--.-CCGUCACCGAGCCGUCCCCG...CUGGCc....cGCA...G------...--.........---...-------ccaggagaagga............................cgaggaagagggc...................................................................--.---.--.---............-.----..--.-..---...--..gGC.C.GcaC......GG..CC.........GA.G...G.CC...UA.A............G...-.-...-.G.........GGUC.G..CCGU..GU......CU...GAC.G....G.G.C..............AG....ACC.AG.CA...A.CCGGG........U.G.A.U
   NC_008345.1       UUUCAACGACGCUGUU..CUGCGUAACA...UGGUAAUGCGCACUAAAG.................................................CU.GCCGUUACUGAAGCUUCUCCU...AUGGC......AAA...AGCAAGA...GA.........CGA...GCGUGAU.....................................................ucacgu......................................................cguucac--.---.--.--C............U.UCUG..AU.G..ACCguaAU...GU.A.G..A......AG..AA.........AG.C...G.CU...GA.A............G...-.-...-.A.........AAAC.G..CUGA..AU......AA...UUU.U....U.U.G..............UG....AAU.AA.UC...A.CUUAA........U.G.U.U
   NC_008700.1       UUUCAACGACGCUGUU..CUGCGUAGCA...UGGUAAUGCGCACCAAGG.................................................GU.GCCAUCACCGAAGCCUCUCCA...AUGGC......UAA...AGCUAAA...GA.........UGA...GCGUG--.....................................................augcucgucgugc.........................................ugccaucagugag--.CGC.UC.UUC............U.GAGG..CU.G..AUG...AA...GU.C.G..A......AG..AA.........AA.C...G.CU...GA.A............G...-.-...A.A.........UC--.-..-UGC..CG......AG...UAA.U....U.U.Cugu........uugUG....ACC.GC.AA...A.CUCUU........U.G.G.U
   NC_008709.1       UUUCAACGAUUCAGUG..AUCCGUAACA...UGAUCAUGCGUACUAAAA.................................................CU.GCUGUGACUGAAGUUUCUGUA...GUGGC......AAA...AGCAAGA...GA.........AGA...GCGUGU-.....................................................ugaac........................................................gugcucCU.CGU.GC.UCCa.........cgU.CCAG..AA.G..UGA...AA...GC.A.G..A......AC..CA.........GA.A...G.CA...GA.A............G...C.A...A.C.........AG--.-..CUGA..AG......CA...UAA.G....C.U.Ac............uUA....GUG.AC.UG...A.UAACU........U.-.-.-
   NC_009092.1       UUUCAACGACGCUGUU..CUUCGUAGCA...UGGUUAUGCGUACCAAGG.................................................GU.GCCAUCACCGAAGCUUCUCCA...AUGGC......UAA...AGCGAAA...GA.........CGA...GCGUG--.....................................................aagcac.......................................................gucguuCU.AGC.GA.AGAg.........cgU.UCAG..CU.G..UAG...AA...GC.U.G..AaguaucUG..AA.........GA.A...G.CC...--.-............G...C.U...G.A.........AAAC.G..CAGC..AG......AG...UAA.G....U.U.Uau.........uugUG....GCC.AC.CA...A.UCACU........U.G.G.U
   NC_009792.1       CUUCAACGAUGCCGUU..AUCCGUAGCA...UGGUAAUGCGUACUAAGC.................................................AC.GCUGUUACCGAAGCAUCUCCG...AUGGU......UAA...AGCGAAA...GA.........CGA...GCGCCGU.....................................................ga...............................................................gcGU.CGC.GA.UGA............U.UUCG..CA.A..ACG...AA...AC.C.G..C......AG..AU.........GA.U...G.CA...GA.U............G...C.U...G.G.........GGAU.U..CUGA..AG......AG...UAA.U....U.U.C..............UG....AUG.AC.CA...A.CCGUC........U.G.G.C
   NC_009831.1       UUUCAACGACGCUGUU..CUGCGUAGCA...UGGUUAUGCGUACUAAAG.................................................CA.GCCAUCACUGAAGCAUCUCCA...AUGGC......UAA...AGCGAAA...GA.........CGA...GCGUGA-.....................................................uucacgucguucu.........................................agcgaaggcgagcGU.CGU.AG.UGC............G.CC--..-U.G..CUG...AA...GC.A.A..C......UG..AA.........GA.A...G.UU...AA.A............G...-.-...A.A.........A-CC.G..CUGA..AA......AA...GCA.G....C.U.G..............AG....UAA.GU.UU...U.UCUGU........G.G.C.C
   NC_009901.1       UUUCAACGACGCUGUU..UUGCGUAGCA...UGGUUAUGCGUACUAAAG.................................................CU.GCCAUCACUGAAGCAUCUCCA...AUGGC......UAA...AGCUAAA...GA.........CGA...GCGCG--.....................................................acacacgucguucau.....................................cugaagagcgugcacCU.CGU.GC.AGA............-.----..--.-..---...-A...GC.U.A..C......UG..AA.........GA.A...G.CU...GA.Agaa......agcG...C.U...G.A.........AAAC.A..CUGC..UG......AG...UAA.G....U.U.Uuu.........uugUG....ACC.AC.AA...A.CAAUU........U.G.G.U
   NC_010334.1       UUUCAACGACGCUGUU..UUGCGUAGCA...UGGUUAUGCGUACUAAAG.................................................CU.GCCAUCACUGAAGCAUCUCCA...AUGGC......UAA...AGCUAAA...GA.........CGA...GCGCGAU.....................................................acacgucguucauc.......................................ugaagagcgugcacCU.CGU.GC.AGA............A.GCUG..CU.G..AAG...AA...GU.U.G..A......AG..AA.........AG.C...G.CU...GA.A............-...-.-...A.A.........CACU.G..CUGA..GU......AA...GUU.U....U.U.Uu............gUG....ACC.AC.AA...A.CAAUU........U.G.G.U
   NC_010506.1       UUUCAACGACGCUGUA..CUGCGUAACA...UGGUUAUGCGUACUAAAG.................................................CU.GCUAUCACUGAAGCAUCUCCA...AUGGC......UAA...AGCUAAA...GA.........CGA...GCGUGAU.....................................................ucacgccgugcu..........................................agcgaaggcgagcGU.CGU.AG.UGC............G.CCAG..C-.-..-UG...AA...GC.A.A..C......UG..AA.........GA.A...G.UU...AC.A............G...-.-...A.A.........GC-C.G..CUGA..AA......AA...ACA.G....C.U.G..............AG....UAA.GU.UU...U.UUUGU........G.-.-.-
   NC_010519.1       UUACAACGACGCAGUU..CUUCGUAACG...UAAUUAUUCGUACUAAGC.................................................AC.GCCGUAACAGAAGCGUCCCCA...AUGGU......UAA...AGCACGU...GA.........AGA...-----GC.....................................................gu...............................................................aa--.---.--.---............G.CCUU..UA.A..CUG...AA...GU.-.-..-......UG..AA.........AA.C...A.AC...GA.U............U...U.U...G.A.........GGAU.G..CUGA..AG......AG...UAA.U....U.U.A.............gAG....GUU.GA.UA...A.UCGUU........U.U.U.C
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   NZ_CP073262.1     CUUCAACGACGCCGUU..AUCCGCAGCA...UGGUUAUGCGCGUUAAAA.................................................AC.GCGGUUACCGAAGCAUCUCCG...AUGGU......AAA...AGCGAAA...GA.........CGA...GCGCCGU.....................................................ga...............................................................ucGC.CGU.GA.AGA............U.UUCG..CC.A..ACG...AA...AC.C.U..C......GG..AU.........GA.U...U.CG...GA.U............G...C.U...G.G.........GGAU.U..CUGA..AG......AG...UAA.U....C.A.Ac...........cgUG....ACG.GC.AA...A.UCGAC........-.U.G.C
   NZ_CP073587.1     UUUCAACGACGCUGUU..CUGCGUAGCC...UGGUUAUGCGCACUAAAG.................................................CU.GCCAUCACCGAAGUUUCUCCA...AUGGC......CAA...AGCAAAA...GA.........UGA...ACGUG--.....................................................acucacgucgcgcagcc................................aacagcgacagagcuguu--.GAC.GA.AGA............U.UCUG..CU.G..---...-A...GC.U.G.gA......UG..AA.........GA.A...A.AC...GC.U............G...A.A...G.A.........GAUC.G..CUGA..GU......AA...GUU.U....U.U.Cu............gUG....ACC.AC.CA...A.CCAUC........U.G.G.A
   NZ_CP073751.1     UUACAACGACGCCGUG..AUCCGUAACA...UGGUCAUCCGUCGUGACG.................................................AA.GCCAUCACUGAACAGUCCGAC...AUGCU......CAA...GCCUGAA...GA.........CAC...UGGC---.....................................................cgugg.........................................................ugagcGU.CGU.GA.AC-............-.----..--.G..CCG...UG...AG.C.G..C......A-..CC.........GA.C...U.CC...GA.C............-...-.-...A.A.........CGAU.G..CUG-..AU......AG...CAA.C....A.A.C..............AG....CAA.CG.AC...A.CCGAC........G.A.C.G
   NZ_CP073754.1     UUUUAACGAUGCGAUU..CUGCGCAGCC...UGACUCUG-GUACAAAAA.................................................GCgGCGGUUACUACGCCUUCUGCU...AUCGC......UUU...A---AGC...GG.........CAA...UGACGG-.....................................................ccaa..........................................................aaagcCU.CCA.GC.CGU............G.UUA-..AA.G..AAG...AA...GU.U.G..A......AG..AA.........GA.A...G.CC...GA.A............G...C.A...G.A.........AGUA.G..UUGA..CG......AU...G--.-....-.-.C..............AG....AAG.UC.GA...A.AUAAC........U.G.-.-
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   NZ_CP074570.1     UUUCAACGAUGUAGUG..CUGCGUAACA...UGAUUAUGCGUACUAAAA.................................................AU.GCUGUUACUGAGCCAUCACCA...AUGGC......UAA...UGAUAAC...AAg......ccU--...-------.....................................................gagcaucgugaa..........................................agaccugcuaaac--.-GA.GA.UGA...........c-.GCGU..CU.U..UUG...AA...GC.C.G..Ca...ucUG..AC.........GA.A...G.CA...UA.A............-...-.-...-.-.........GAAU.U..AGGA.uAG......AG...GAA.A....U.A.A..............AA....AAU.GU.CU...A.ACUAU.....uucA.G.A.C
   NZ_CP074578.1     UUACAACGAUGCUGUG..AUCCGUAACC...UGGUCAUCCGUCGCGACG.................................................AA.GCCGUAACCGGCCAGUCCGAG...AUGCU......CAA...GGCUGAA...GA.........GAA...CCGCAGU.....................................................gagcgc......................................................cgugagcGU.CGU.GA.CCG............U.CCUGagCAcU..CCG...AC...AG.C.G..C......CG..AU.........GG.C...G.AU...GA.C............G...-.-...G.C.........GACA.A..CAGC..GA......CG...UUA.G....C.G.A..............UA....ACG.CU.G-...-.-----........-.-.-.-
   NZ_CP074676.1     CUACAACGAUGCCGUG..AUCCGUAACC...UGGUCAUCCGUCGCGACG.................................................AA.GCCGUUACCGGCCAGUCCGAG...AUGCU......CAA...GGCUGAA...GA.........AAA...CCGC---.....................................................agugagcgccgugagcgucgcgaccg...............uccugagcacgcugacaacgccgaag--.-GC.GA.UGA............-.-CAG..C-.-..--G...AC...AA.C.A..G......CG..AC.........AA.C...A.GC...--.-............G...A.U...A.A.........CG--.-..CUGA..CG......AG...UAA.U....C.C.A..............CG....--G.AC.CU...U.UUG--........A.G.G.A
   NZ_CP075564.1     CUUCAACGAUGCCGUU..AUCCGCAACA...UGAUCAUGCGCACCAAGC.................................................AC.GCCGUGACUGAAGUUUCUCCG...AUGGC......CAA...GGCCAAG...GA.........AGA...GCGCU--.....................................................uca.............................................................cccGU.CGU.GA.CGA............C.GA-G..--.-..---...-C...GC.C.G..-......CG..AA.........GA.U...G.CU...GU.U............G...A.A...G.C.........GUCU.U..CCGA..AG......AG...UAA.U....U.C.U.............uAG....AUC.AC.CG...C.AUUAG........A.G.G.A
   NZ_CP075567.1     CUACAACGAUGCUGUG..AUCCGUAACC...UGGUCAUCCGUCGCGACG.................................................AA.GCCGUUACCGGCCAGUCCGAG...AUGCU......CAA...GGCUGAA...GA.........AAA...CCGCAGU.....................................................gagcgc......................................................cgugagcGU.CGC.GA.ACG............U.CCUG..AG.C..ACG...AU...GG.C.A..G......CG..CC.........GA.U...G.GC...GA.U............G...A.C...A.G.........CGAU.A..GCGA.cAG......CG...ACA.A....C.A.G..............CG....AUA.AC.GC...U.G----........-.-.-.-
   NZ_CP076413.1     GUUCAACGACGCCGUG..CUGCGUCACC...UCAUCGUUCAGACCAAGA.................................................AG.GCUGAAACGGCGCCGUCGCCG...AUGAU......GAA...GG-----...--.........---...AAGUCGC.....................................................acgcgaagagg.............................................ccaagaagaccGC.CGC.UC.AGA............-.----..CC.G..AAC...AG...GC.C.G..C......--..CU.........GA.U...A.CC...GC.-............G...U.G...G.U.........GC--.-..-UGC..GC......A-...---.-....-.-.-..............--....---.--.--...-.-----........-.-.-.-
   NZ_CP076643.1     UUUCAACGACGCAGUU..CUGCGUAACA...UGAUCAUGCGUACUAAAG.................................................CG.CCUGUAACUGAAGCGUCUAUC...AUGCU......GAA...AGCGAAA...GA.........AGA...GCGUGCU.....................................................cc...............................................................ucGU.CGC.GA.AGA............-.----..--.-..---...--...-U.C.G..U......G-..AA.........GA.A...G.CU...AA.A............U...C.A...G.A........aGC-A.G..CUGA..GU......AA...U--.-....U.U.Cc............uUU....AUG.AC.CA...A.UCGAA........U.G.G.A
   NZ_CP076668.1     UUACAACGAUGCUGUG..AUCCGUAACC...UGGUCAUCCGUCGCGACG.................................................AA.GCCGUAACUGGCCAGUCCGAG...AUGCU......CAA...GGCUGAA...GA.........GAA...CCGCAGU.....................................................gagcgc......................................................cgugagcGU.CGU.GA.CCG............U.CCUGagCAcU..CCG...AC...AG.C.G..C......CG..AU.........GG.C...G.AU...GA.C............G...-.-...G.U.........GACA.A..CAGC..GA......CG...UUA.G....C.G.A..............UA....ACG.CU.G-...-.-----........-.-.-.-
   NZ_CP076686.1     UUUCAACGAUGCAAUC..AUCCGCGACA...UGAUCCUGCGCCGUGAUG.................................................GU.GCGGAUACAGACCUGUCCCCG...AU---......GAA...AGCUUCC...GAg.......u---...-------.....................................................cccgugaagaccgucguggcggcgaugaucgcccgcgucguucagccgaaucugacgagccacguca--.---.--.---............G.CGUG..CU.G..AAA...CC...CA.G.G..A......CG..AA.........GA.A...G.AG...UA.A............U...U.A...A.C.........CGGA.G..UUGA..GG......AG...UUA.A...gU.U.A..............UG....---.--.--...-.-----........-.-.-.-
   NZ_CP077073.1     CUACAACGAUGCCGUG..AUCCGUAACC...UGGUCAUCCGUCGCGACG.................................................AA.GCCGUUACCGGCCCGUCCGAG...AUGCU......CAA...GGCCGAA...GA.........GAA...CCGCA--.....................................................gcgagcgccgug...........................................agcgucgugaacGU.CCU.GA.AAA............U.GCUG..AU.G..GCG...CC...GA.U.G..G......CG..AC.........GA.C...A.GC...AA.U............G...-.-...A.C.........AGCG.A..CAAC..AG......CG...ACA.A....C.G.C..............UG....ACG.AG.UA...A.UCCAC........G.-.-.-
   NZ_CP077075.1     CUACAACGAUGCCGUG..AUCCGUAACC...UGGUCAUCCGUCGUGACG.................................................AA.GCCGUUACCGGCCCGUCCGAG...AUGCU......CAA...GGCCGAA...GA.........AAA...CCGCAGC.....................................................gagcgccgugag...........................................cgucgugaacgu--.CCU.GA.CAA............U.GCCG..AC.G..GCG...CC...GA.U.G..G......CG..AC.........GA.C...A.GC...AA.U............G...-.-...A.C.........AGCG.A..CAAC..AG......CG...ACA.A....C.G.C..............UG....ACG.AG.UA...A.UCCAC........G.-.-.-
   NZ_CP077078.1     CUACAACGAUGCAGUG..AUCCGUAACC...UGGUCAUCCGUCGCGACG.................................................AA.GCCGUUACCGGCCAGUCCGAG...AUGCU......CAA...GGCUGAA...GA.........AAA...CCGCAGU.....................................................gagcgc......................................................cgugagcGU.CGC.GA.CCG............U.CCUG..AG.C..ACG...AA...GG.C.G..U......UG..AAagc...gcuGA.C...A.GU...GA.U............G...-.-...A.C.........AGCG.A..CAAC..AG......CG...AUA.A....C.G.C..............UG....ACG.AG.UA...A.UCCAC........G.-.-.-
   NZ_CP077079.1     CUACAACGAUGCAGUG..AUCCGUAACC...UGGUCAUCCGUCGCGAAG.................................................AA.GCCGUUACCGGCCAAUCCGAG...AUGCU......CAA...GGCUGAA...GA.........AAA...CCGCAGU.....................................................gagcgc......................................................cgugagcGU.CGC.GA.CCG............U.CCUG..AG.C..ACG...AA...GG.C.G..C......UG..AUagc...gcuGA.C...A.GU...GA.U............G...-.-...A.C.........AGCG.A..CAGC..AG......CG...AUA.A....C.G.C..............UG....ACG.AG.UA...A.UCCAC........G.-.-.-
   NZ_CP077080.1     CUACAACGAUGCAGUG..AUCCGUAACC...UGGUCAUCCGUCGCGAAG.................................................AA.GCCGUCACCGGCCAAUCCGAG...AUGCU......CAA...GGCUGAA...GA.........AAA...CCGCAGU.....................................................gagcgccgugagcgucgcgaccg.....................uccugagcacucugacagcgccgAU.GGC.GA.UGA............-.-CAG..C-.-..--G...AU...AG.C.G..A......CA..GC.........GA.C...A.AC...AG.C............G...A.U...A.A.........CG--.-..CUGA..CG......AG...UAA.U....C.C.A..............CG....--G.AC.CU...U.UUA--........A.G.G.A
   NZ_CP077083.1     CUACAACGAUGCAGUG..AUCCGUAACC...UGGUCAUCCGUCGCGAAG.................................................AA.GCCGUUACCGGCCAAUCCGAG...AUGCU......CAA...GG---CU...GA.........AGA...AAACCGC.....................................................agugagcgccgu..........................................gagcgucgcgaccGU.CCU.GA.AGA............A.GGCG..CU.G..AUG...AU...AG.C.G..U......UG..AA.........GA.C...A.GC...GA.Caac......agcG...A.-...-.-.........UAAC.G..CUGA..CG......AG...UAA.U....C.C.A..............CG....G--.AC.CU...U.AUUAA........G.G.-.-
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   NZ_CP077090.1     CUACAACGAUGCAGUG..AUCCGUAACC...UGGUCAUCCGUCGCGACG.................................................AA.GCCGUAACUGGCCAGUCCGAG...AUGCU......CAA...GGCUGAA...GA.........AAA...CCGCAGU.....................................................gagcgc......................................................cgugagcGU.CGC.GA.CCG............U.CCUG..AG.C..ACG...AA...GG.C.G..C......CG..AAggc...accGA.U...A.GU...GA.U............G...-.-...A.C.........AGCG.A..CAAC..AG......CG...AUA.A....C.G.C..............UG....ACG.AG.UA...A.UCCAC........G.-.-.-
   NZ_CP077091.1     CUACAACGAUGCAGUG..AUCCGUAACC...UGGUCAUCCGUCGCGACG.................................................AA.GCCGUUACCGGCCAGUCCGAG...AUGCU......CAA...GGCUGAA...GA.........AAA...CCGCAGU.....................................................gagcgc......................................................cgugagcGU.CGC.GA.CCG............U.CCUG..AG.C..ACG...AA...GG.C.G..C......CG..AA.........GG.C...A.CC...GA.C............A...U.U...G.Aug.....acAGCG.A..CAAC..AG......CG...AUA.A....C.G.C..............UG....ACG.AG.UA...A.UCCAC........G.-.-.-
   NZ_CP077092.1     CUACAACGAUGCAGUG..AUCCGUAACC...UGGUCAUCCGUCGCGACG.................................................AA.GCCGUUACCGGCCAGUCCGAG...AUGCU......CAA...GGCUGAA...GA.........AAA...CCGCAGU.....................................................gagcgc......................................................cgugagcGU.CGC.GA.CCG............U.CCUG..AG.C..ACG...AA...GG.C.G..C......CG..AAggc...accGA.C...A.GU...GA.U............G...-.-...A.C.........AGCG.A..CAAC..AG......CG...AUA.A....C.G.C..............UG....ACG.AG.UA...A.UCCAC........G.-.-.-
   NZ_CP077093.1     CUACAACGAUGCUGUG..AUCCGUAACC...UGGUCAUCCGUCGUGACG.................................................AA.GCCAUCACUGGUCAGUCCGAG...AUGCU......CAA...GGCUGAA...GA.........AAA...CCGCAGU.....................................................gagcgccguga.............................................gcgucgcgaccGU.CCU.GA.GCA............C.UCCG..AC.G..CUG...AA...GG.C.G..U......UG..AG.........GG.U...-.--...GA.U............G...-.-...A.C.........AGCG.A..CAAC..AG......CG...AUA.A....C.G.C..............UG....ACG.AG.UA...A.UCCAC........G.-.-.-
   NZ_CP077094.1     CUACAACGAUGCCGUU..AUCCGUAACC...UCGUCAUCCGUCGCGACG.................................................AA.GCCGUAACCGGCCAAUCCGAG...AUGCU......GAA...GGCUGAA...GA.........AAA...CCGCAG-.....................................................cgagcgccgugagcgucgugagc....................guccugagcaugcugaauccgccgAU.GGC.GA.CGA............-.-CAG..C-.A..AUG...AC...AG.C.G..A......CU..CC.........--.-...-.--...AG.C............G...A.U...A.A.........CG--.-..CUGA..CG......AG...UAA.U....C.C.A..............CG....---.--.--...-.-----........-.-.-.-
   NZ_CP077097.1     CUACAACGAUGCCGUU..AUCCGUAACC...UGGUCAUCCGUCGCGACG.................................................AA.GCCGUUACCGGCCAGUCCGAG...AUGCU......GAA...GGCUGAA...GA.........AAA...CCGCAG-.....................................................cgagcgccgug............................................agcgucgugagcGU.CCU.GA.GCA............U.GCUG..AA.U..CCG...CC...GA.C.G..G......CG..AC.........GA.C...A.GC...AA.U............G...-.-...A.C.........AGCG.A..CUCC..AG......CG...AUA.A....C.G.C..............UG....ACG.AG.UA...A.UCCAC........G.-.-.-
   NZ_CP077366.1     CUUCAACGACGCCGUU..AUCCGUAGCA...UGGUUAUGCGCGUUAAAA.................................................AC.GCGGUAACUGAAGCAUCGCCG...AUGGU......UAA...AGCGAAA...GA.........UGA...GCGUCGU.....................................................ga...............................................................ucGU.CGC.GA.AGA............U.UUUG..CU.A..ACG...AA...UC.C.G..C......UG..AU.........GA.G...U.CA...GA.U............G...C.U...G.G.........GGAU.U..CUGA..AG......AG...UAA.U....C.C.Au...........cgUG....ACG.GU.UA...A.UCGAC........U.-.-.-
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   NZ_LR884459.1     UUAUAACGAUGCCAUC..AUCCGUAGCU...UAGUUAUGCGCCGCGAUG.................................................AC.GCUAUCACUGAAGAGUCUCAG...UUAGC......UAA...GAACGCU...GA.........UGA...AAAGCGU.....................................................gcucguaaagcuaaccgu..............................cguccugauucagacaaccGC.UCU.GA.UGA............U.GACA..AU.G..AUG...AC...GA.C.A..A......CG..AU.........GA.C...A.CU...GA.C............G...A.U...A.G........cAG--.-..-UGA..CG......AC...UAA.U....U.A.A..............AG....GAG.AA.AU...C.UCAUG........-.-.-.-
   NZ_LR890047.1     UUUUAACGAUAAUGUU..AUCCGCAGUA...UUGUUAUGCGCACUAAAA.................................................AC.CCUGUAAAUGAGGUUUCAGCU...AUGCU......AAA...GCCCAAA...GA.........UGA...ACGUCAU.....................................................agcga.........................................................ucgucGC.CGC.GA.UGA............U.UUCU..CU.C..AUG...AA...AG.C.G..Cu...acAG..GU.........GA.U...U.AC...UA.Gugu......auuA...C.U...A.G.........UAUU.A..CUAG..AU......AG...UAA.U....U.C.U..............UG....AAG.UU.AC...U.CUAAA........U.U.U.-
   NZ_LS483250.1     CUUUAACGACGCCGUU..AUCCGUAGCA...UGUUCCUACGUACUAAAG.................................................GU.GUAGUUACUGAAGCUUCUCCA...AUGGC......UAA...AGCUAAA...GA.........AGA...ACGC---........................................................................................................................--.CGU.GA.AGC............-.---G..C-.-..CUG...CU...GC.U.A..C......UG..AA.........GC.A...A.CA...GC.U............G...C.U...A.A.........AU--.-..-AAU..AG......CG...UUU.U....A.G.C..............U-....AUA.GG.UA...U.UUGUU........U.G.U.U
   NZ_LS483422.1     CUUCAACGAUGCCGUU..AUCCGCAGCA...UGGUUAUGCGCGUUAAAC.................................................AC.GCGGUGACAGAAGCUUCUUCU...AUGGU......UAA...AGCUAAA...GA.........CGA...ACGUCGC.......................................................................................................................gGC.CGU.GA.CCU............U.UCUG..AU.G..AUU...AU...CA.G.G..A......UG..AA.........GA.A...A.CU...GA.Ag.........aaG...C.U...G.G.........GGAU.U..CUGA..AG......AG...UAA.U....U.G.Cac.........aggUG....ACC.AC.UA...A.UCGUU........U.A.G.U
   NZ_LS483429.1     UUAUAACGAUGCUGUA..UUACGCAGUC...UUGUUAUCCAUACUAAGC.................................................AC.GCCGUAACCGAAGCGUCCCCA...AUGAA......AGC...GGCUAAA...GA.........AGA...AC-----.....................................................gua.............................................................aacCU.UUA.GC.UGA............A.GUUG..AA.A..ACA...AC...GA.U.U..U......UG..AG.........GA.U...G.CU...GA.A............-...-.-...G.A.........GUAA.U..UUGA..AA......--...---.-....-.-.-..............--....AUU.GA.UA...A.UCGUU........U.U.U.C
   NZ_LS483443.1     UUAUAACGAUGCUGUA..UUACGCAGCC...UUGUUAUUCACACUAAGC.................................................AC.GCCGUAACCGAAGCGUCCCCA...AUGGU......UAA...AGCAAAA...GA.........UGA...UCGUA--.....................................................aa...............................................................gc-U.UUA.AC.UGA............A.GUUG..AA.U..CCA...AC...GA.U.U..U......UG..AG.........GA.U...G.CU...GA.A............G...-.-...-.A.........GUAA.U..UUGA..AC......AU...UGA.A....A.A.C..............CG....UUU.AU.CC...A.UUAUU........G.G.U.A
   NZ_LS483458.1     UUAUAACGAUGCUGUA..UUACGCAGUC...UUGUUAUCCAUACUAAGC.................................................AC.GCCGUAACAGAAGCGUCCCCA...AUGAA......AGC...GGCUAAA...GA.........AGA...AC-----.....................................................gua.............................................................aacCU.UUA.GC.UGA............A.GUUG..AA.A..ACA...AC...GA.U.U..U......UG..AG.........GA.U...G.CU...GA.A............-...-.-...G.A.........GUAA.U..UUGA..AA......--...---.-....-.-.-..............--....AUU.GA.UA...A.UCGUU........U.U.U.C
   NZ_LS483470.1     UUUCAACGAUGCCGUU..AUCCGCAGCA...UGGUUAUGCGUACUAAGC.................................................AU.GCCGUGACUGAAGCAUCUCCG...AUGGU......UAA...AGCUAAA...GA.........AGA...UCGUCGC.....................................................ga...............................................................ucGC.CGC.GA.AGA............U.UAUG..CU.G..AAG...AA...AC.C.G..C......CG..AG.........GA.U...G.AC...UC.Agau......gauG...C.U...G.G.........GGAU.U..CUGA..AG......AG...UAA.A....U.A.Gccc.......guguUG....ACU.GC.UA...A.CCGAC........U.C.A.C
   NZ_LS999205.1     UUACAACGAUGCUGUG..AUCCGUAACC...UGGUCAUCCGUCGCGAAG.................................................AA.GCCAUCACUGGCCAAUCCGAG...AUGCU......CAA...GGCUGAA...GA.........AAA...CCGCAGU.....................................................gagcgc......................................................cgugagcGU.CGU.GA.CCG............U.CCUG..AG.C..AUG...CU...GA.C.A..G......CG..CC.........GA.U...G.GC...GA.U............G...A.C...A.G........cGACA.A..CAGC..GA......CG...CCA.G....C.G.A..............UA....ACG.CU.G-...-.-----........-.-.-.-
   NZ_LT615367.1     CUUCAACGACGCCGUU..AUCCGCAGCA...UGGUUAUGCGCGUUAAGC.................................................AC.GCGGUAACUGAAGCAUCUCCG...AUGGU......GAA...AGCGAAA...GA.........CGA...ACGCCGU.....................................................ga...............................................................gcGU.CGU.GA.CGA............A.UACG..CU.-..--G...AA...GC.U.G..A......UG..AU.........GA.U...G.CU...GA.A............G...U.U...G.G.........GGAU.U..CUGA..AG......AG...UAA.U....U.G.Uug.........uggUG....GCG.AC.CA...A.UCGGC........U.G.G.A
   NZ_LT855380.1     UUACAACGAUGCUGUG..AUCCGUAACC...UGGUCAUCCGUCGCGACG.................................................AA.GCCGUAACUGGCCAGUCCGAG...AUGCU......CAA...GGCUGAA...GA.........AAA...CCGCAGU.....................................................gagcgc......................................................cgugagcGU.CGU.GA.CCG............U.CCUGagCAcU..CCG...AC...AG.C.G..C......CG..AU.........GG.C...G.AU...GA.C............G...-.-...G.C.........GACA.A..CAGC..GA......CG...UUA.G....C.G.A..............UA....ACG.CU.G-...-.-----........-.-.-.-
   NZ_LT897836.1     CUUUAAUGAUGCCGUU..AUUCGCAGUA...UUAUCACGCGUGUUAAGC.................................................AU.GCGGUGACUGAAGCAUCUCCG...AUGAA......AGA...CUCGAAA...GA.........UGA...ACGUCGC.....................................................ga...............................................................gcGC.CUU.GA.AGA............U.UUCG..UU.A..CCG...AA...GU.A.A..A......CA..AA.........GA.C...U.AU...AA.U............G...C.U...A.Uuag...caaGUAG.G..AUGA..AU......AA...UUA.A....U.U.A..............UG....GCA.AC.UA...A.CUGCC........U.A.A.U
   NZ_LT906434.1     CUUCAACGAUGCCGUA..UUGCGUCAUC...UGACCAUCAAAACCAAAC.................................................AU.GCCGUUACCGAAGCUUCUCCG...AUGCU......GAA...A---GAC...GA.........AAA...-----GU.....................................................c.................................................................u--.---.-A.AAA............A.UCUG..C-.-..UCG...AC...AG.C.A..A......CU..CU.........GC.G...G.CU...AA.A............G...A.A...G.A.........AACU.G..CCGA..AG......CG...UAA.U....U.G.A..............AG....AUU.GA.AA...A.UCU--........U.U.U.C
   NZ_LT906448.1     UUACAACGACGCAGUU..CUUCGUAACG...UAAUCAUUCGUACUAAGC.................................................AC.GCCGUAACAGAAGCGUCCCCA...AUGGU......UAA...AGCAAAA...GA.........CGA...UCGUA--.....................................................a................................................................agCU.UUA.GC.UGA............A.GUUG..AA.A..ACA...AC...GA.U.U..U......UG..AG.........GA.U...G.CU...GA.A............G...-.-...-.A.........GUAA.U..UUGA..AA......AU...UGA.U....A.A.C..............CG....UUU.UU.CG...-.-----........-.-.-.-
   NZ_LT906463.1     UUAUAACGAUGCUGUA..UUACGCAGUC...UUGUUAUCCACACUAAGC.................................................AC.GCCGUAACCGAAGCGUCCCCA...AUGGC......UAA...AGCUAAA...GA.........UGA...U------.....................................................c................................................................gu--.---.AA.AGC............U.GUAG..CU.G..AAG...UU...GA.A.A..C......CA..AC.........GA.U...-.--...--.-............U...U.U...G.A.........GGAU.G..CUGA..AG......AG...UAA.U....U.C.C..............AC...uAUU.GA.UA...A.UCGCU........U.U.U.C
   NZ_LT907988.1     CUACAACGACGCCGUG..CUGCGCCACC...UGGUCAUCAAGACCAAGG.................................................CU.GCCCCCGCCGCCGCGUCGGUG...AUGAU......GAA...GUCGGUC...GA.........---...GCGCG--.....................................................aag.............................................................aggCC.CGC.AA.---............G.GCCA..GC.G..CCG...AA...GC.C.G..C......CG..CU.........CC.C...G.CC...GA.A............U...C.C...G.A.........GUAA.U..-UCC..GG......--...---.-....-.-.A..............UC....ACG.GC.GU...U.UCGUA........-.-.-.-
   NZ_OU015521.1     CUAUAACGAUGCUGUG..AUUCGUAAUU...UAAUUUUAAAACGCAAUC.................................................AU.GCUAUUACCGAGCUUUCACUC...AUUAU......GCA...AGGCGCU...GA.........ACA...AACGA--.....................................................aauuuuugaaaga........................................gaagcuaaaagucuUC.GUU.GA.AGA............A.AGGA..CU.G..UUG...AA...AA.A.C..U......UG..AA.........GA.A...A.CC...UA.A............-...-.-...G.A.........GGAA.U..AUAU..GU......CA...U--.-....-.-.U..............UC....AUC.GC.AA...A.AAAUU........C.U.G.U
   NZ_OU594967.1     UUUCAACGAUGCCGUU..AUCCGUAACA...UGAUUAUGCGUAAAAAAC.................................................AC.GCUGAAACUGAAGCAUCACCA...AUUGC......UAA...AGCAAAA...GA.........UGA...UCGCC--.....................................................cag.............................................................cucGU.CGU.GA.CCA............U.CGUG..AA.G..---...AC...GC.U.C..C......AG..CA.........AG.A...U.CU...CA.U............U...C.A...G.A.........UGAC.U..CUGA..AG......AG...AAU.G....U.G.G..............AG....CAG.AG.CG...A.AGAAG........CaG.C.U


   Structure         ((((((((....))).....((.((((.....(((...((((........................................................)).))....)))..((((((..((....((((.............((((((....................(((.(..........................................................................................................................)..)))...................).))))..)................)).).).........)).............)).)...).))...................)...).)...)...........)).......)))..)).................................................((.((..................).).).)


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rpsF-priB-rpsR-rplI



Position: 346-490, Conformation: #0







97% 90% 75% 50% Nucleotide present N N N Nucleotide identify E < 0.1 Base-pair covariation E < 0.05 Helix-level covariation 97% 90% 75%

Y U Y A A C G A Y G C R U U C G Y A R C U R R U Y A U C R Y Y R A G C R U A C Y G A R Y U C Y A U G Y A A R R G A R A R R R R R G G A R R R R Y G R 5'