rfe-wzzE-wecB-wecC-rffG-rffH-rffC-wecE-wzxE-wecF-wzyE-rffM



Position: 5966-6075, Conformation: #0







DMS reactivity > 1.0 0.0 0.4 0.7 G/U/No data
Position: 0 (position.label in template: 0.5')5' Position: 1 (position.label in template: 1.G) Reactivity: nanG Position: 2 (position.label in template: 2.C) Reactivity: nanC Position: 3 (position.label in template: 3.G) Reactivity: nanG Position: 4 (position.label in template: 4.A) Reactivity: nanA Position: 5 (position.label in template: 5.A) Reactivity: nanA Position: 6 (position.label in template: 6.A) Reactivity: nanA Position: 7 (position.label in template: 7.U) Reactivity: nanU Position: 8 (position.label in template: 8.U) Reactivity: nanU Position: 9 (position.label in template: 9.C) Reactivity: nanC Position: 10 (position.label in template: 10.U) Reactivity: nanU Position: 11 (position.label in template: 11.C) Reactivity: nanC Position: 12 (position.label in template: 12.A) Reactivity: nanA Position: 13 (position.label in template: 13.U) Reactivity: nanU Position: 14 (position.label in template: 14.C) Reactivity: nanC Position: 15 (position.label in template: 15.A) Reactivity: nanA Position: 16 (position.label in template: 16.U) Reactivity: nanU Position: 17 (position.label in template: 17.C) Reactivity: nanC Position: 18 (position.label in template: 18.A) Reactivity: nanA Position: 19 (position.label in template: 19.C) Reactivity: nanC Position: 20 (position.label in template: 20.U) Reactivity: nanU Position: 21 (position.label in template: 21.A) Reactivity: nanA Position: 22 (position.label in template: 22.C) Reactivity: nanC Position: 23 (position.label in template: 23.G) Reactivity: nanG Position: 24 (position.label in template: 24.C) Reactivity: nanC Position: 25 (position.label in template: 25.C) Reactivity: nanC Position: 26 (position.label in template: 26.G) Reactivity: nanG Position: 27 (position.label in template: 27.G) Reactivity: nanG Position: 28 (position.label in template: 28.A) Reactivity: nanA Position: 29 (position.label in template: 29.A) Reactivity: nanA Position: 30 (position.label in template: 30.G) Reactivity: nanG Position: 31 (position.label in template: 31.A) Reactivity: nanA Position: 32 (position.label in template: 32.U) Reactivity: nanU Position: 33 (position.label in template: 33.A) Reactivity: 0A Position: 34 (position.label in template: 34.A) Reactivity: 0A Position: 35 (position.label in template: 35.A) Reactivity: 0A Position: 36 (position.label in template: 36.G) Reactivity: nanG Position: 37 (position.label in template: 37.G) Reactivity: nanG Position: 38 (position.label in template: 38.U) Reactivity: nanU Position: 39 (position.label in template: 39.U) Reactivity: nanU Position: 40 (position.label in template: 40.A) Reactivity: 1A Position: 41 (position.label in template: 41.U) Reactivity: nanU Position: 42 (position.label in template: 42.U) Reactivity: nanU Position: 43 (position.label in template: 43.U) Reactivity: nanU Position: 44 (position.label in template: 44.C) Reactivity: 0C Position: 45 (position.label in template: 45.C) Reactivity: 0C Position: 46 (position.label in template: 46.A) Reactivity: 0.5A Position: 47 (position.label in template: 47.G) Reactivity: nanG Position: 48 (position.label in template: 48.C) Reactivity: 0C Position: 49 (position.label in template: 49.G) Reactivity: nanG Position: 50 (position.label in template: 50.C) Reactivity: 0C Position: 51 (position.label in template: 51.C) Reactivity: 0C Position: 52 (position.label in template: 52.U) Reactivity: nanU Position: 53 (position.label in template: 53.G) Reactivity: nanG Position: 54 (position.label in template: 54.C) Reactivity: 0.5C Position: 55 (position.label in template: 55.U) Reactivity: nanU Position: 56 (position.label in template: 56.G) Reactivity: nanG Position: 57 (position.label in template: 57.G) Reactivity: nanG Position: 58 (position.label in template: 58.G) Reactivity: nanG Position: 59 (position.label in template: 59.C) Reactivity: 0C Position: 60 (position.label in template: 60.G) Reactivity: nanG Position: 61 (position.label in template: 61.A) Reactivity: 1A Position: 62 (position.label in template: 62.U) Reactivity: nanU Position: 63 (position.label in template: 63.G) Reactivity: nanG Position: 64 (position.label in template: 64.G) Reactivity: nanG Position: 65 (position.label in template: 65.U) Reactivity: nanU Position: 66 (position.label in template: 66.A) Reactivity: 0.5A Position: 67 (position.label in template: 67.G) Reactivity: nanG Position: 68 (position.label in template: 68.U) Reactivity: nanU Position: 69 (position.label in template: 69.G) Reactivity: nanG Position: 70 (position.label in template: 70.A) Reactivity: 1A Position: 71 (position.label in template: 71.G) Reactivity: nanG Position: 72 (position.label in template: 72.U) Reactivity: nanU Position: 73 (position.label in template: 73.U) Reactivity: nanU Position: 74 (position.label in template: 74.C) Reactivity: 0C Position: 75 (position.label in template: 75.G) Reactivity: nanG Position: 76 (position.label in template: 76.G) Reactivity: nanG Position: 77 (position.label in template: 77.U) Reactivity: nanU Position: 78 (position.label in template: 78.A) Reactivity: 0A Position: 79 (position.label in template: 79.U) Reactivity: nanU Position: 80 (position.label in template: 80.C) Reactivity: 0C Position: 81 (position.label in template: 81.C) Reactivity: 0C Position: 82 (position.label in template: 82.A) Reactivity: 1A Position: 83 (position.label in template: 83.G) Reactivity: nanG Position: 84 (position.label in template: 84.C) Reactivity: 0.5C Position: 85 (position.label in template: 85.U) Reactivity: nanU Position: 86 (position.label in template: 86.G) Reactivity: nanG Position: 87 (position.label in template: 87.G) Reactivity: nanG Position: 88 (position.label in template: 88.A) Reactivity: 0A Position: 89 (position.label in template: 89.A) Reactivity: 1A Position: 90 (position.label in template: 90.U) Reactivity: nanU Position: 91 (position.label in template: 91.A) Reactivity: 0.5A Position: 92 (position.label in template: 92.U) Reactivity: nanU Position: 93 (position.label in template: 93.G) Reactivity: nanG Position: 94 (position.label in template: 94.C) Reactivity: 0C Position: 95 (position.label in template: 95.C) Reactivity: 0C Position: 96 (position.label in template: 96.G) Reactivity: nanG Position: 97 (position.label in template: 97.A) Reactivity: 0A Position: 98 (position.label in template: 98.A) Reactivity: 0A Position: 99 (position.label in template: 99.C) Reactivity: 0C Position: 100 (position.label in template: 100.A) Reactivity: 1A Position: 101 (position.label in template: 101.G) Reactivity: nanG Position: 102 (position.label in template: 102.C) Reactivity: 0C Position: 103 (position.label in template: 103.C) Reactivity: 0C Position: 104 (position.label in template: 104.C) Reactivity: 0C Position: 105 (position.label in template: 105.A) Reactivity: 0.5A Position: 106 (position.label in template: 106.G) Reactivity: nanG Position: 107 (position.label in template: 107.C) Reactivity: 0C Position: 108 (position.label in template: 108.C) Reactivity: 0C Position: 109 (position.label in template: 109.C) Reactivity: 0C Position: 110 (position.label in template: 110.G) Reactivity: nanG Position: 111 (position.label in template: 111.G) Reactivity: nanG Position: 112 (position.label in template: 112.A) Reactivity: 0A Position: 113 (position.label in template: 113.C) Reactivity: 1C Position: 114 (position.label in template: 114.G) Reactivity: nanG Position: 115 (position.label in template: 115.G) Reactivity: nanG Position: 116 (position.label in template: 116.U) Reactivity: nanU Position: 117 (position.label in template: 117.C) Reactivity: 0.5C Position: 118 (position.label in template: 118.U) Reactivity: nanU Position: 119 (position.label in template: 119.G) Reactivity: nanG Position: 120 (position.label in template: 120.G) Reactivity: nanG Position: 121 (position.label in template: 121.C) Reactivity: nanC Position: 122 (position.label in template: 122.G) Reactivity: nanG Position: 123 (position.label in template: 123.C) Reactivity: nanC Position: 124 (position.label in template: 124.A) Reactivity: nanA Position: 125 (position.label in template: 125.G) Reactivity: nanG Position: 126 (position.label in template: 126.G) Reactivity: nanG Position: 127 (position.label in template: 127.C) Reactivity: nanC Position: 128 (position.label in template: 128.C) Reactivity: nanC Position: 129 (position.label in template: 129.U) Reactivity: nanU Position: 130 (position.label in template: 130.U) Reactivity: nanU Position: 131 (position.label in template: 131.U) Reactivity: nanU Position: 132 (position.label in template: 132.A) Reactivity: nanA Position: 133 (position.label in template: 133.U) Reactivity: nanU Position: 134 (position.label in template: 134.C) Reactivity: nanC Position: 135 (position.label in template: 135.A) Reactivity: nanA Position: 136 (position.label in template: 136.U) Reactivity: nanU Position: 137 (position.label in template: 137.C) Reactivity: nanC Position: 138 (position.label in template: 138.G) Reactivity: nanG Position: 139 (position.label in template: 139.G) Reactivity: nanG Position: 140 (position.label in template: 140.U) Reactivity: nanU Position: 141 (position.label in template: 141.G) Reactivity: nanG Position: 142 (position.label in template: 142.A) Reactivity: nanA Position: 143 (position.label in template: 143.A) Reactivity: nanA Position: 144 (position.label in template: 144.A) Reactivity: nanA Position: 145 (position.label in template: 145.C) Reactivity: nanC Position: 146 (position.label in template: 146.C) Reactivity: nanC Position: 147 (position.label in template: 147.U) Reactivity: nanU Position: 148 (position.label in template: 148.U) Reactivity: nanU Position: 149 (position.label in template: 149.C) Reactivity: nanC Position: 150 (position.label in template: 150.C) Reactivity: nanC Position: 151 (position.label in template: 151.3')3' 10 20 30 50 100


rfe-wzzE-wecB-wecC-rffG-rffH-rffC-wecE-wzxE-wecF-wzyE-rffM



Position: 5966-6075, Conformation: #0







Retained alignments:


   NC_004347.2       CGCC....A...G...A....G...G...A...U...C....A....A.....U..C.U..U.....C....U....U..U.U.C..A...A.......C..G..U..C.......UU..C.U...C...G.GU.....GA....CGG.U.....A.....G....U...G..A...CU.U....U.G...G..UA..UC.A..G.U...U.U................................................G..CA..A.UA...UGCaguuC..-...AA..G...U..A.AC.-.-.....A..C..C.-.A.....GAU..GGC.....UUAGCGCA...A...G...C...U...UU.U...A.UU..A...U..C..G...G...U.G
   NC_004369.1       CACC....C...G...A....G...G...A...C...C....G....C.....A..G.C..G.....C....G....U..U.C.G..A...G.......C..G..A..C.......UG..C.U...C...G.GU.....GA....UGG.U.....-.....-....U...C..C...GG.C....U.G...G..GG..UA.U..-.-...-.-cuc.......................................gcu...G..UC..C.UA...CGC....C..G...UC..C...A..G.CC.G.U....cG..C..C.-.G.....GAU..GGC.....CUGGCGCA...G...G...C...G...UU.C...A.UC..A...U..C..G...G...C.G
   NC_004578.1       CGCC....A...G...A....A...G...Ac.uU...G...c-...cA.....A..G.C..U.....U....U....C..G.C.A..A...G.......-..-..-..C.......UG..C.U...G...G.GC.....GA....CGG.C.....A.....G....U...C..A...GU.A....C.G...G..CA..UU.G..A.A...C.U................................................C..AC..U.UA...UGC....C..G...AA..C...A..A.CC.U.A....cG..C..C.C.G.....-AU..GGC.....CUGGCACA...A...G...C...G...UU.C...A.UC..A...U..U..G...G...C.G
   NC_004603.1       CACC....U...G...A....-...A...G...A...C....A....A.....U..G.A..G.....A....G....U..U.U.U..A...A......gC..G..C..U.......UA..C.U...U...G.GU.....GA....UGG.U.....U.....C....C...G..A...UU.A....U.G...G..UA..UU.A..A.U...U.U................................................A..GA..A.UA...UGC....A..A...UA..C...A..G.CC.U.U.....C..U..C.C.G.....GAU..GGG.....UUAGCUCA...A...G...C...G...UU.U...A.CU..A...U..U..G...G...U.G
   NC_005070.1       CACC....C...C...A....U...G...A...Uc.aG....G....A.....G..G.C..C.....-....-....U..U.U.C..A...G.......C..G..G..U.......UG..C.U...U...G.GC.....GA....UGG.C.....A.....G....U...C..G...CU.G....G.G...G..CA..UG.A..C.C...A.U................................................U..CA..A.UA...CGC....C..G...UG..C...A..G.CC.C.A.....G..C..C.C.G.....GAU..GGG.....UUGGCGCA...G...G...C...U...UU.C...C.UC..A...U..C..G...G...C.G
   NC_005126.1       CGCC....A...G...A....A...G...A...U...U....U....A.....C..C.U..U.....C....U....U..U.C.C..G...C.......C..G..G..C.......UG..U.U...A...G.GU.....GA....UGG.U.....A.....A....C...A..G...AU.U....U.G...G..UA..UU.C..A.C...U.U................................................G..AG..C.UA...UAA....A..G...AA..C...A..G.CC.A.U....cA..C..C.G.G.....-AU..GGU.....UUAGCUCA...G...G...C...A...UU.U...U.UG..A...U..U..G...G...U.G
   NC_006138.1       CCCC....C...G...A....A...G...A...C...A....A....U.....G..C.C..A.....A....C....U..U.C.A..G...G.......C..G..U..C.......UU..C.U...G...G.GC.....AG....CGG.C.....G.....A....A...C..A...GU.U....A.G...G..GA..UA.A..G.C...A.U................................................U..CA..A.UA...UGC....A..A...UA..C...A..G.CC.A.A.....G..C..C.C.G.....GAU..GGU.....UUAGCUCA...G...G...C...C...UU.C...A.UC..A...U..A..G...G...U.G
   NC_006512.1       CACC....A...G...A....G...G...A...U...C....U....G.....C..C.U..A.....A....U....U..U.U.A..A...A.......A..A..A..C.......UA..U.U...A...G.GU.....GA....UGG.U.....U.....C....C...A..A...AU.U....C.G...G..UA..UC.G..A.A...U.U................................................A..UC..U.UA...CGC....U..G...AG..C...A..A.CC.G.A.....G..U..C.C.U.....GAU..GGU.....UUAGCACA...G...G...C...U...UU.U...A.UC..A...U..U..G...G...A.G
   NC_006513.1       CGCC....G...C...A....G...-...-...G...A....C....A.....C..G.C..Cg...cG....U....U..U.C.G..A...G.......C..A..G..C.......UG..C.U...C...G.GC.....GA....CGG.C.....A.....-....-...-..A...GC.G....C.U...G..GG..GG.C..U.GagcC.U................................................G..CG..G.UA...CGC....G..G...UG..C...A..G.CC.G.A.....G..C..C.C.G.....GAC..GGG.....CUCGCGCA...G...G...C...C...UU.U...C.UG..A...U..C..G...G...C.G
   NC_007512.1       CUCC....U...G...A....A...G...A...C...C....A....A.....C.cG.U..C.....-....G....U..U.C.A..U...G.......A..A..G..C.......UU..C.U...C...G.GA.....GA....CGG.G.....A.....G....C...G..A...--.-....-.-...-..--..--.-..-.-...-.-cugggggaucaggc................ugaccuaugcggugc...-..--..-.--...---....-..-...--..-...A..G.CC.A.U.....C..U..C.C.C.....GAU..GGU.....CUUGCCCA...G...G...C...G...UU.C...A.UC..A...U..C..G...G...A.G
   NC_007626.1       CGCC....G...G...A....C...-...-...G...A....C....C.....U..G.C..Cg...cG....U....U..U.C.G..A...G.......C..G..C..C.......UG..C.U...G...G.GC.....GA....CGG.C.....C.....G....C...C..G...CU.G....G.G...G..CA..UC.A..A.U...C.U................................................C..AG..C.UA...UGC....G..G...AA..C...A..G.CC.C.A.....A..G..C.C.G.....GCC..GGG.....CUGCCUCA...G...G...C...C...UU.U...C.UG..A...U..C..G...G...C.G
   NC_007645.1       CUCC....G...G...A....U...G...A...U...U....U....G.....C..C.U..U.....A....C....U..U.C.A..A...A.......A..A..G..A.......UG..U.U...G...G.GA.....GA....CGG.U.....G.....C....G...G..A...UU.U....U.G...G..CG..UA.A..C.G...C.U................................................U..GC..G.UA...CGC....U..G...AG..C...A..G.CC.A.U.....C..C..C.C.C.....GAU..GGC.....CUCGCGCA...G...G...C...C...UU.U...A.UA..A...U..C..G...G...U.G
   NC_007712.1       CACC....A...G...A....A...-...-...G...A....G....A.....U..G.C..C.....A....U....UauU.C.A..A...G.......C..G..G..U.......UG..C.U...C...G.GC.....GC....GGG.C.....G.....A....G...G..C...GU.U....U.G...G..CG..UU.C..G.U...C.U................................................G..AC..U.UA...UGC....C..G...CC..C...A..G.CC.G.A.....G..U..C.C.C.....GAC..GGC.....AUAGCGCA...G...G...C...G...UU.C...C.UG..A...U..U..G...G...C.G
   NC_007794.1       CGCC...cG...A...G....G...A...U...G...C....-....G.....G..U.G..C.....A....G....U..U.C.C..A...G.......C..G..U..G.......UU..C.U...G...G.GC.....GA....UGG.G.....U.....C....G...G..C...GU.U....C.G...G..CA..UC.G..C.G...A.U................................................C..AG..C.UA...UGC....G..G...UC..C...A..G.CC.A.A.....G..C..C.C.C.....GAC..GGG.....UUGGCACA...G...G...C...C...UU.U...C.AU..A...U..C..G...G...C.G
   NC_007912.1       CCCC....G...G...A....A...G...A...U...C....A....A.....U..C.U..U.....C....G....U..U.U.A..A...G.......C..G..U..G.......UA..U.U...G...G.GA.....GA....UGG.U.....U.....C....U...G..G...UU.U....U.G...G..UA..UA.A..G.C...C.U................................................U..AA..G.UA...UGC....A..G...UU..C...A..A.CC.U.A.....C..A..C.C.A.....GAU..GGU.....UUAGCGCA...A...G...C...A...UU.U...A.UU..A...U..A..G...G...U.G
   NC_007954.1       CGCC....A...G...A....A...G...A...C...A....Au..gA.....A..G.C..U.....U....U....-..-.U.A..A...G.......C..G..U..U.......UA..U.U...A...G.GU.....GA....UGG.U.....U.....C....A...G..A...UU.U....C.G...G..CA..UU.A..A.U...U.U................................................A..AG..C.UA...UGA....A..A...UU..C...A..G.CC.A.U....cA..C..C.-.A.....GAU..GGC.....UUAGCACA...A...G...C...U...UU.U...A.UU..A...U..C..G...G...U.G
   NC_008027.1       CCCC....G...A...C....C...G...A...C...-....-....C.....U..G.C..Cg...gG....C....U..U.C.C..A...G.......C..G..C..A.......UG..C.U...C...G.GU.....GA....CGG.C.....A.....G....C...C..A...GU.U....C.G...G..UA..UC.A..A.G...C.U................................................C..AG..C.UA...CGC....C..G...AG..C...A..G.CC.A.A.....G..C..C.C.G.....GAU..GGC.....CUGGCCCA...G...G...C...G...UU.C...A.UC..A...U..C..G...G...C.A
   NC_008148.1       CCCC....C...C...A....G...G...A...C...C....U....G.....C..C.G..C.....G....C....U..U.C.G..A...G.......C..A..G..C.......UG..C.U...G...G.GC.....GA....CGG.C.....U.....Cg..cA...G..U...GG.G....G.G...A..UG..AG.C..U.U...C.A................................................G..CU..A.--...CGC....C..G...UC..C...A..G.CC.C.C.....G..C..C.C.C.....GAG..GGG.....CUCGCGCA...G...G...C...G...UU.C...G.UC..A...U..C..G...G...G.C
   NC_008260.1       CCCC....G...G...A....A...G...A...U...C....A....G.....G..C.C..G.....G....C....U..U.C.C..A...G.......C..G..C..C.......UG..C.U...G...G.GC.....GA....UGG.C.....A.....G....U...C..A...GU.U....C.G...G..UA..UC.G..A.G...C.U................................................C..AC..C.UA...UGC....C..A...UC..C...A..G.CC.A.A.....G..C..C.C.G.....GAU..GGC.....CUGGCCCA...G...G...C...C...UU.U...A.UC..A...U..U..G...G...C.G
   NC_008340.1       CCCC....G...C...A....G...G...A...C...A....C....C.....C..C.G..C.....G....C....U..U.C.G..A...G.......C..A..A..C.......UG..C.U...G...G.GC.....GA....UGG.C.....G.....A....G...C..A...GU.G....G.G...G..GC..UU.A..A.C...C.U................................................G..AA..C.UA...CGC....C..G...UG..C...A..A.CC.C.U.....C..G..C.C.G.....GAC..GGU.....CUGGCCCA...G...G...C...G...UU.C...A.UC..A...U..C..G...G...C.G
   NC_008554.1       CGCC....C...G...A....G...G...A...Uc.uGc..cG....A.....G..G.U..U.....-....-....-..-.C.G..A...A.......C..U..G..C.......UG..C.U...C...G.GC.....GA....CGG.C.....A.....G....U...C..A...AU.G....G.G...G..AA..UC.C..G.G...C.U................................................G..CA..C.UA...CGC....C..G...AA..C...A..A.CC.C.C.....G..G..C.C.G.....GAA..GGA.....CUCGCUCA...G...G...C...C...UU.C...A.UU..A..uC..G..G...G...C.G
   NC_008639.1       CACC....C...G...A....A...G...A...U...C....U....G.....C..C.U..U.....U....G....U..U.U.C..A...G.......C..G..U..C.......UG..C.U...G...G.GA.....GA....UGG.C.....A.....G....C...G..G...UU.G....-.-...-..--..--.-..-.-...-.-gggaauauc...........................gcuuuccua...-..--..-.--...---....-..-...CA..A...G..G.CU.C.Aac.caU..C.gC.C.U.....GAC..GGG.....CUGGCGCA...G...G...C...U...UU.U...A.UU..C...U..U..G...G...U.G
   NC_008686.1       CGCC....C...G...A....G...G...A...U...C....A....G.....G..C.C..C.....A....G....U..U.C.C..G...C.......C..G..C..C.......UG..C.U...G...G.GC.....GA....CGG.C.....A.....G....C...C..A...A-.-....-.-...-..--..--.-..-.-...-.-uggggccu............................cagauucga...-..--..A.UA...CCU....G..G...UG..C...A..A.CC.C.U.....C..G..C.C.G.....GAC..GGG.....CUGGCGCA...G...G...C...C...UA.U...C.UC..C...U..G..G...C...C.G
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   NZ_LS483422.1     CACC....U...G...A....A...G...A...U...C....A....A.....A..G.C..A.....G....C....U..U.C.G..A...A.......C..G..U..U.......UA..U.U...A...G.GU.....GA....CGG.U.....U.....C....U...C..A...GU.U....U.G...G..UA..UU.U..C.A...U.U................................................A..CA..A.UA...UGC....A..A...UA..C...A..A.CC.A.A.....A..A..C.C.G.....GAA..GGU.....UUAGCGCA...A...G...C...U...UU.U...A.UU..A...U..C..G...G...C.G
   NZ_LS483460.1     CCCC....G...G...A....G...G...A...C...C....A....G.....G..A.C..G.....C....C....U..U.C.A..A...G.......C..G..C..C.......UG..U.U...G...G.GU.....GA....UGG.C.....U.....C....CcagC..U...GG.G....C.C...U..CA..UG.-..-.-...C.U................................................C..CA..C.UA...UGC....G..G...UC..C...A..G.CC.G.C.....G..C..C.C.A.....GAA..GGC.....UUGGCCCA...G...G...C...C...UU.C...C.UC..A...U..U..G...C...G.G
   NZ_LS483470.1     CGCC....G...G...A....A...G...A...U...C....-....-.....U..G.C..Cc...gC....C....U..U.U.C..G...C.......C..G..C..C.......UG..U.U...G...G.GG.....UC....GGG.U.....G.....A....G...G..A...GU.U....U.G...G..CA..UU.C..G.A...U.U................................................A..AG..C.UA...UGC....C..G...AG..C...A..G.CC.U.A.....G..C..C.C.G.....GAC..GGC.....CUGGCUCA...G...G...C...A...UU.U...A.UU..A...U..U..G...G...C.G
   NZ_LS999205.1     CCCC....-...-...-....C...C...A...G...G....A....C....cU..G.C..Cg...cA....A....U..A.C.C..G...C.......A..A..C..C.......UG..C.U...G...G.GU.....GA....CGG.C.....A.....G....C...C..A...GU.U....C.G...G..CG..UG.C..G.U...U.U................................................U..UG..C.UA...CGC....C..G...AA..C...A..G.CC.U.U.....C..G..C.C.G.....GAU..GGC.....CUGGCCCA...G...G...C...C...UU.C...C.UG..A...U..U..G...G...C.G
   NZ_LT605205.1     CUCC....G...G...U....C...G...A...C...C....-....-.....U..G.C..C.....Ag..gA....U..U.C.G..A...A.......C..G..G..U.......UG..C.U...C...G.GU.....GA....UGG.U.....U.....C....U...G..A...CU.A....U.G...G..UG..UC.C..A.U...U.U................................................C..AG..U.UA...UGC....C..G...AA..C...A..A.CC.U.U.....C..U..C.C.G.....GAC..GGA.....UUGGCACA...G...G...C...U...UU.U...A.UU..A...U..C..G...G...A.G
   NZ_LT605585.1     CUCC....G...U...A....U...G...A...C...U....U....A.....C..C.U..C.....U....A....U..U.U.C..A...G.......A..A..A..U.......UG..C.U...C...G.GU.....GA....UGG.C.....C.....A....C...G..A...GU.U....C.G...G..CG..UG.-..A.G...C.U...............................................uC..UC..A.UA...UGC....U..G...AG..C...A.aG.CG.C.A.....U..C..C.G.A.....-AC..GGU.....CUGGCCGA...A...G...C...U...UU.U...A.UC..A...U..C..G...G...U.A
   NZ_LT615367.1     CACC....U...G...A....AgacA...A...C...G....A....A.....G..G.G..U.....-....-....-..U.C.C..G...G.......C..G..U..U.......UG..U.U...G...A.GC.....GA....UGG.C.....A.....G....U...C..A...UU.U....U.G...G..AA..UC.A..A.U...A.U................................................U..GA..G.UA...UGC....U..G...UU..C...A..G.CC.U.A.....G..U..C.C.G.....GAU..GGA.....CUUGCUCA...G...G...C...A...UU.C...A.UU..A...U..U..G...G...U.G
   NZ_LT635479.1     CACC....C...C...A....G...G...A...U...A....C....A.....C..C.C..A.....G....A....U..U.U.A..A...A.......G..A..A..C.......UG..C.U...G...G.GG.....GA....CGG.A.....C.....A....U...C..A...GU.U....U.G...G..UG..UG.C..A.G...C.U................................................G..UC..C.UA...UGC....G..G...UG..C...A..G.CC.A.A.....G..U..C.C.G.....GAC..GGA.....CUGGCCCA...G...G...C...G...UU.U...A.UC..A...U..C..G...G...C.G
   NZ_LT853882.1     CGCC....G...C...A....C...G...A...G...C....A....G.....G.cG.C..U.....-....G....U..U.C.C..A...G.......U..C..G..U.......UA..C.U...G...G.GC.....GA....CGG.U.....G.....C....G...C..A...GU.G....G.G...G..GG..UC.A..A.U...A.U................................................C..CA..G.UA...CGC....C..G...UG..C...A..A.CC.G.A.....G..C..C.C.G.....GAC..GGG.....UUGGCGCA...G...G...CcuaU...CU.G...A.UC..G...G..C..C...G...C.G
   NZ_LT855380.1     CGCC....G...G...A....G...-...-...-...-....-....-.....G..A.U..U.....U....G....C..C.G.C..A...G.......U..A..C..Cgca.agcUG..U.U...G...G.GG.....GA....UGG.C.....A.....G....C...C..A...GU.U....C.G...G..UG..UG.C..A.A...U.U................................................C..AA..U.UA...CGC....C..G...AG..C...A..G.CC.G.A.....A..A..C.C.G.....GAC..GGU.....CUGGCGCA...A...G...C...C...UU.U...C.UG..A...U..U..G...G...U.G
   NZ_LT906434.1     CGCC....C...G...A....A...G...A...C...-....A....A.....C..G.C..C....gC....U....U..U.C.C..G...C.......C..G..C..C.......UU..U.U...G...G.GA.....GA....CGG.C.....U.....C....C...G..A...UU.U....C.G...G..CA..UC.C..G.C...A.U................................................C..GA..U.UA...CGC....C..G...AA..C...A..G.CC.C.A.....G..C..C.C.C.....GAC..GGU.....UUGGCACA...G...G...C...U...UU.C...A.UC..A...U..C..G...G...C.G
   NZ_LT906435.1     CGCC....G...C...A....G...-...-...G...A....C....A.....C..G.C..Cg...cG....U....U..U.C.G..A...G.......C..A..A..C.......UG..C.U...G...G.GC.....GA....CGG.C.....A.....G....C...C..A...GU.G....G.G...G..CC..UG.A..A.U...C.U................................................C..CA..G.UA...UGC....G..G...UU..C...A..G.CC.C.U.....C..G..C.C.G.....GAC..GGU.....CUGGCUCA...G...G...C...C...UU.U...C.UG..A...U..C..G...G...U.G
   NZ_LT906439.1     CUCC....G...C...A....A...G...A...U...U....U....A.....C..C.U..C.....G....U....U..U.U.G..A...G.......G..A..G..A.......UG..C.U...U...G.GC.....GA....UGG.A.....U.....C....U...G..A...GU.U....U.G...G..GA..UU.A..C.G...C.U................................................U..UC..U.UA...UGC....A..G...AG..C...A..A.CC.A.A.....G..U..C.C.A.....GAU..GGC.....UUGGCGCA...A...G...C...C...UU.U...A.UC..A...U..U..G...G...A.G
   NZ_LT906442.1     CUCC....U...G...A....A...G...A...U...A....U....C.....G..G.U..U.....U....G....U..A.U.C..A...A.......C..G..C..C.......UA..U.U...A...G.GA.....AA....UGG.G.....-.....-....-...G..A...GA.A....A.U...U..UG..GU.-..-.-...-.-auua....................................acuua...-..AC..U.UA...UAA....A..G...UU..C...A..G.CC.U.A....gC..C..C.U.G.....GAG..GAA.....UUG-CUCA...G...G...C...U...UU.U...A.UU..A...U..U..G...G...A.G
   NZ_LT906449.1     CUCC....A...C...A....G...G...A...U...C....-....-.....U..G.C..C.....Ag..gU....U..U.U.C..A...G.......C..G..G..C.......UG..C.U...G...G.GC.....GA....UGG.C.....A.....G....U...G..A...UU.A....C.G...G..UA..UC.C..G.C...U.U................................................G..GC..G.UA...UGC....C..G...AA..C...A..A.CC.G.U.....C..G..C.C.U.....GAU..GGG.....CUGGCACA...G...G...C...G...UU.U...A.UC..A...U..C..G...G...U.G
   NZ_LT906451.1     CCAU....A...G...A....G...G...A...U...G....A....G.....G..A.U..U.....C....A....U..U.U.A..A...A.......C..G..C..U.......UG..C.U...A...G.GG.....AA....UGG.U.....G.....A....G...C..A...GU.U....U.G...G..UA..UC.C..G.C...U.U................................................G..AA..U.UA...CGC....U..C...UG..C...A..A.CC.A.A.....A..A..C.C.U.....GAU..GGU.....UUAGCUCA...G...G...C...A...UU.U...A.UU..A...U..C..G...G...C.G
   NZ_LT906467.1     CCCC....G...G...A....G...G...A...U...G....C....G.....G..G.C..G.....C....G....U..U.C.A..A...G.......C..G..C..C.......UG..C.U...U...G.GC.....GA....CGG.C.....U.....C....G...C..G...UU.U....C.G...G..CA..UC.A..U.G...C.U................................................C..AG..C.UA...CGC....C..G...UC..C...A..G.CC.C.U.....C..C..C.C.G.....GAU..GGA.....CUCGCGCA...G...G...C...U...UU.C...A.UC..A...U..C..G...G...C.G
   NZ_LT906479.1     CGCC....A...G...A....G...G...A...U...A....U....G.....C..C.C..U.....C....U....U..U.C.C..A...G.......C..G..C..U.......UA..C.U...U...G.GA.....GA....UGG.C.....A.....G....C...C..G...--.-....-.-...-..--..--.-..-.-...-.-uuuuggcaucagacu...............gagcuaugaaaucca...-..--..-.--...---....-..-...--..-...-..A.CC.A.A.....G..U..C.C.A.....GAU..GGG.....CUGGCUCA...A...G...C...U...UU.C...C.UG..A...U..U..G...G...C.G
   NZ_LT906482.1     CCCC....C...G...A....A...G...A...U...A....A....C.....G..C.C..G.....C....C....U..U.C.C..A...C.......C..G..C..C.......UG..C.U...U...G.GC.....AA....CGG.C.....A.....G....C...G..A...CU.U....C.G...G..CA..UC.C..G.U...C.U................................................G..CA..A.UA...CGC....C..G...UA..C...A..A.CC.C.A.....G..C..C.C.A.....GAC..GGC.....CUUGCCCA...A...G...C...U...UU.C...A.UC..A...U..C..G...G...C.G
   NZ_LT906483.1     CCCC....G...Ac.gG....A...C...G...C...G....C....C.....G..G.C..G.....-....-....U..U.C.C..A...G.......C..G..G..C.......UG..C.U...C...G.GC.....GA....CGG.C.....U.....C....G...G..C...GU.U....C.G...G..UG..UG.A..A.C...C.U................................................G..CG..G.UA...UGC....C..G...AA..C...A..G.CAgG.A.....G..C.cC.G.A.....GGG..G--.....CUGGCCCA...G...G...C...C...UU.C...G.UG..A...U..C..G...G...C.G
   NZ_LT960614.1     CGCC....G...C...A....U...G...A...C...C....U....-.....-..G.C..Cg...aA....U....U..U.C.C..A...G.......C..G..G..U.......UG..C.U...C...G.GA.....GA....CGG.C.....C.....-....-...-..-...--.-....-.-...A..--..--.-..-.-...-.-guccugggggauu...................ucgaucuccuaug...-..--..-.--...--C....C..G...AG..C...A..G.CC.U.U.....C..G..C.C.C.....GAU..GGU.....CUGGCGCA...G...G...C...C...UA.U...A.UC..A...U..C..G...G...C.G
   NZ_OU015321.1     CACC....U...C...A....A...G...A...U...C....A....A.....G..A.A..A.....G....U....U..U.C.A..A...A.......A..A..A..U.......UA..U.U...G...G.GA.....GA....UGG.U.....U.....C....U...U..-...--.-....-.-...-..--..--.-..-.-...-.-cuauuggcuguaagu...............uugaauauaaaguuc...-..--..-.--...---....-..-...--..-...A..G.CC.U.U.....C..C..C.C.A.....GAU..GGU.....UUAGCUCA...A...G...C...U...UU.U...A.UU..U...U..G..G...G...A.G
   NZ_OU015430.1     CCCC....G...C...A....C...G...A...G...C....A....G.....G..C.G..C.....U....G....U..U.C.C..A...G.......A..A..C..C.......UG..C.U...G...G.GC.....GA....CGG.U.....U.....C....G...C..A...GU.G....G.G...G..CA..UG.A..A.G...A.U................................................C..GA..G.UA...CGC....C..G...UG..C...A..G.CC.G.A.....G..C..C.C.C.....GAC..GGG.....CUUGCGCAggcG...U...U...C...CU.G...A.UC..G...G..C..C...G...C.G


   Structure         ((((....(...(............(...(...(...(....(....(.....(..(.(..(....................(.(..(...(..........(..(..(...........(.(...(...(.((............((.(...........................((.(....(.(...(..((..((.(...........................................................)..)).........)))....)..)...))..)......).)).........)..)..).).).....)....))).....)))).......)...)...)...)...)).)...).))......)..)..)...)...).)


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rfe-wzzE-wecB-wecC-rffG-rffH-rffC-wecE-wzxE-wecF-wzyE-rffM



Position: 5966-6075, Conformation: #0







97% 90% 75% 50% Nucleotide present N N N Nucleotide identify E < 0.1 Base-pair covariation E < 0.05 Helix-level covariation 97% 90% 75%

C C C A G A Y Y U U Y A R R Y U R Y U G G Y G A Y G G Y A U G G R U U U A Y G C G C A R C C Y C C G A Y G G Y U R G C C A R G C U U Y U A U Y G G Y G 5'