rfaD-waaF-waaC-waaL



Position: 1026-1155, Conformation: #0







DMS reactivity > 1.0 0.0 0.4 0.7 G/U/No data
Position: 0 (position.label in template: 0.5')5' Position: 1 (position.label in template: 1.G) Reactivity: nanG Position: 2 (position.label in template: 2.C) Reactivity: nanC Position: 3 (position.label in template: 3.U) Reactivity: nanU Position: 4 (position.label in template: 4.G) Reactivity: nanG Position: 5 (position.label in template: 5.A) Reactivity: nanA Position: 6 (position.label in template: 6.A) Reactivity: nanA Position: 7 (position.label in template: 7.G) Reactivity: nanG Position: 8 (position.label in template: 8.G) Reactivity: nanG Position: 9 (position.label in template: 9.U) Reactivity: nanU Position: 10 (position.label in template: 10.G) Reactivity: nanG Position: 11 (position.label in template: 11.U) Reactivity: nanU Position: 12 (position.label in template: 12.A) Reactivity: nanA Position: 13 (position.label in template: 13.A) Reactivity: nanA Position: 14 (position.label in template: 14.C) Reactivity: nanC Position: 15 (position.label in template: 15.G) Reactivity: nanG Position: 16 (position.label in template: 16.G) Reactivity: nanG Position: 17 (position.label in template: 17.A) Reactivity: nanA Position: 18 (position.label in template: 18.A) Reactivity: nanA Position: 19 (position.label in template: 19.U) Reactivity: nanU Position: 20 (position.label in template: 20.A) Reactivity: nanA Position: 21 (position.label in template: 21.C) Reactivity: nanC Position: 22 (position.label in template: 22.A) Reactivity: nanA Position: 23 (position.label in template: 23.U) Reactivity: nanU Position: 24 (position.label in template: 24.G) Reactivity: nanG Position: 25 (position.label in template: 25.G) Reactivity: nanG Position: 26 (position.label in template: 26.C) Reactivity: nanC Position: 27 (position.label in template: 27.C) Reactivity: nanC Position: 28 (position.label in template: 28.U) Reactivity: nanU Position: 29 (position.label in template: 29.G) Reactivity: nanG Position: 30 (position.label in template: 30.G) Reactivity: nanG Position: 31 (position.label in template: 31.C) Reactivity: nanC Position: 32 (position.label in template: 32.U) Reactivity: nanU Position: 33 (position.label in template: 33.G) Reactivity: nanG Position: 34 (position.label in template: 34.A) Reactivity: 1A Position: 35 (position.label in template: 35.A) Reactivity: 0.5A Position: 36 (position.label in template: 36.U) Reactivity: nanU Position: 37 (position.label in template: 37.C) Reactivity: 0.5C Position: 38 (position.label in template: 38.G) Reactivity: nanG Position: 39 (position.label in template: 39.C) Reactivity: 0C Position: 40 (position.label in template: 40.G) Reactivity: nanG Position: 41 (position.label in template: 41.A) Reactivity: 0.5A Position: 42 (position.label in template: 42.C) Reactivity: 0.5C Position: 43 (position.label in template: 43.G) Reactivity: nanG Position: 44 (position.label in template: 44.C) Reactivity: 0.5C Position: 45 (position.label in template: 45.A) Reactivity: 0.5A Position: 46 (position.label in template: 46.U) Reactivity: nanU Position: 47 (position.label in template: 47.A) Reactivity: 1A Position: 48 (position.label in template: 48.A) Reactivity: 0.5A Position: 49 (position.label in template: 49.G) Reactivity: nanG Position: 50 (position.label in template: 50.A) Reactivity: 1A Position: 51 (position.label in template: 51.G) Reactivity: nanG Position: 52 (position.label in template: 52.C) Reactivity: 1C Position: 53 (position.label in template: 53.U) Reactivity: nanU Position: 54 (position.label in template: 54.C) Reactivity: 0C Position: 55 (position.label in template: 55.U) Reactivity: nanU Position: 56 (position.label in template: 56.G) Reactivity: nanG Position: 57 (position.label in template: 57.C) Reactivity: 0.5C Position: 58 (position.label in template: 58.A) Reactivity: 0.5A Position: 59 (position.label in template: 59.U) Reactivity: nanU Position: 60 (position.label in template: 60.G) Reactivity: nanG Position: 61 (position.label in template: 61.A) Reactivity: 1A Position: 62 (position.label in template: 62.A) Reactivity: 0.5A Position: 63 (position.label in template: 63.A) Reactivity: 0A Position: 64 (position.label in template: 64.A) Reactivity: 0.5A Position: 65 (position.label in template: 65.U) Reactivity: nanU Position: 66 (position.label in template: 66.A) Reactivity: 1A Position: 67 (position.label in template: 67.C) Reactivity: 0C Position: 68 (position.label in template: 68.U) Reactivity: nanU Position: 69 (position.label in template: 69.G) Reactivity: nanG Position: 70 (position.label in template: 70.G) Reactivity: nanG Position: 71 (position.label in template: 71.U) Reactivity: nanU Position: 72 (position.label in template: 72.G) Reactivity: nanG Position: 73 (position.label in template: 73.A) Reactivity: 0A Position: 74 (position.label in template: 74.U) Reactivity: nanU Position: 75 (position.label in template: 75.C) Reactivity: 0.5C Position: 76 (position.label in template: 76.G) Reactivity: nanG Position: 77 (position.label in template: 77.G) Reactivity: nanG Position: 78 (position.label in template: 78.C) Reactivity: 0C Position: 79 (position.label in template: 79.C) Reactivity: 0C Position: 80 (position.label in template: 80.C) Reactivity: 0C Position: 81 (position.label in template: 81.G) Reactivity: nanG Position: 82 (position.label in template: 82.U) Reactivity: nanU Position: 83 (position.label in template: 83.C) Reactivity: 0C Position: 84 (position.label in template: 84.U) Reactivity: nanU Position: 85 (position.label in template: 85.U) Reactivity: nanU Position: 86 (position.label in template: 86.G) Reactivity: nanG Position: 87 (position.label in template: 87.G) Reactivity: nanG Position: 88 (position.label in template: 88.G) Reactivity: nanG Position: 89 (position.label in template: 89.U) Reactivity: nanU Position: 90 (position.label in template: 90.U) Reactivity: nanU Position: 91 (position.label in template: 91.G) Reactivity: nanG Position: 92 (position.label in template: 92.G) Reactivity: nanG Position: 93 (position.label in template: 93.C) Reactivity: 0C Position: 94 (position.label in template: 94.G) Reactivity: nanG Position: 95 (position.label in template: 95.A) Reactivity: 0A Position: 96 (position.label in template: 96.C) Reactivity: 0C Position: 97 (position.label in template: 97.A) Reactivity: 0A Position: 98 (position.label in template: 98.U) Reactivity: nanU Position: 99 (position.label in template: 99.G) Reactivity: nanG Position: 100 (position.label in template: 100.A) Reactivity: 0A Position: 101 (position.label in template: 101.U) Reactivity: nanU Position: 102 (position.label in template: 102.G) Reactivity: nanG Position: 103 (position.label in template: 103.A) Reactivity: 0A Position: 104 (position.label in template: 104.U) Reactivity: nanU Position: 105 (position.label in template: 105.G) Reactivity: nanG Position: 106 (position.label in template: 106.U) Reactivity: nanU Position: 107 (position.label in template: 107.C) Reactivity: 1C Position: 108 (position.label in template: 108.G) Reactivity: nanG Position: 109 (position.label in template: 109.C) Reactivity: 0.5C Position: 110 (position.label in template: 110.A) Reactivity: 0A Position: 111 (position.label in template: 111.A) Reactivity: 1A Position: 112 (position.label in template: 112.A) Reactivity: 1A Position: 113 (position.label in template: 113.G) Reactivity: nanG Position: 114 (position.label in template: 114.U) Reactivity: nanU Position: 115 (position.label in template: 115.C) Reactivity: 0C Position: 116 (position.label in template: 116.U) Reactivity: nanU Position: 117 (position.label in template: 117.C) Reactivity: 0C Position: 118 (position.label in template: 118.U) Reactivity: nanU Position: 119 (position.label in template: 119.A) Reactivity: 1A Position: 120 (position.label in template: 120.U) Reactivity: nanU Position: 121 (position.label in template: 121.C) Reactivity: 0C Position: 122 (position.label in template: 122.G) Reactivity: nanG Position: 123 (position.label in template: 123.C) Reactivity: 0C Position: 124 (position.label in template: 124.A) Reactivity: 0.5A Position: 125 (position.label in template: 125.C) Reactivity: 1C Position: 126 (position.label in template: 126.G) Reactivity: nanG Position: 127 (position.label in template: 127.C) Reactivity: 0C Position: 128 (position.label in template: 128.U) Reactivity: nanU Position: 129 (position.label in template: 129.C) Reactivity: 0C Position: 130 (position.label in template: 130.C) Reactivity: 0C Position: 131 (position.label in template: 131.A) Reactivity: 0A Position: 132 (position.label in template: 132.G) Reactivity: nanG Position: 133 (position.label in template: 133.G) Reactivity: nanG Position: 134 (position.label in template: 134.C) Reactivity: 0C Position: 135 (position.label in template: 135.G) Reactivity: nanG Position: 136 (position.label in template: 136.C) Reactivity: 1C Position: 137 (position.label in template: 137.G) Reactivity: nanG Position: 138 (position.label in template: 138.C) Reactivity: nanC Position: 139 (position.label in template: 139.U) Reactivity: nanU Position: 140 (position.label in template: 140.A) Reactivity: nanA Position: 141 (position.label in template: 141.U) Reactivity: nanU Position: 142 (position.label in template: 142.C) Reactivity: nanC Position: 143 (position.label in template: 143.C) Reactivity: nanC Position: 144 (position.label in template: 144.C) Reactivity: nanC Position: 145 (position.label in template: 145.C) Reactivity: nanC Position: 146 (position.label in template: 146.A) Reactivity: nanA Position: 147 (position.label in template: 147.G) Reactivity: nanG Position: 148 (position.label in template: 148.G) Reactivity: nanG Position: 149 (position.label in template: 149.C) Reactivity: nanC Position: 150 (position.label in template: 150.G) Reactivity: nanG Position: 151 (position.label in template: 151.A) Reactivity: nanA Position: 152 (position.label in template: 152.U) Reactivity: nanU Position: 153 (position.label in template: 153.A) Reactivity: nanA Position: 154 (position.label in template: 154.A) Reactivity: nanA Position: 155 (position.label in template: 155.U) Reactivity: nanU Position: 156 (position.label in template: 156.C) Reactivity: nanC Position: 157 (position.label in template: 157.G) Reactivity: nanG Position: 158 (position.label in template: 158.A) Reactivity: nanA Position: 159 (position.label in template: 159.U) Reactivity: nanU Position: 160 (position.label in template: 160.G) Reactivity: nanG Position: 161 (position.label in template: 161.U) Reactivity: nanU Position: 162 (position.label in template: 162.G) Reactivity: nanG Position: 163 (position.label in template: 163.A) Reactivity: nanA Position: 164 (position.label in template: 164.U) Reactivity: nanU Position: 165 (position.label in template: 165.G) Reactivity: nanG Position: 166 (position.label in template: 166.G) Reactivity: nanG Position: 167 (position.label in template: 167.C) Reactivity: nanC Position: 168 (position.label in template: 168.A) Reactivity: nanA Position: 169 (position.label in template: 169.C) Reactivity: nanC Position: 170 (position.label in template: 170.C) Reactivity: nanC Position: 171 (position.label in template: 171.3')3' 10 20 30 50 100 150


rfaD-waaF-waaC-waaL



Position: 1026-1155, Conformation: #0







Retained alignments:


   NC_005126.1       GG...GGU..AA.CG..GAAUA.U...AU.-GC.A..UUg.gC-.UCAAU.C..............................................................AG.G...AUA....A.GUAA........U............cU.......A........C............U...C....A......C........U.......A..UGAAAA.UAUUGG.U.GAUC.GGC.CCUUCG.UGGGUGGGUGACAUGA.UGAUGUCGCAGA.............................................................GCCUUUA.C.CGG..AC.AUU...A.A..AG..G.C.U.U..UG...C....A.U..C.CU....A..A..U..GC.A..G.A..A.AU.UGAUG.UG.AUG.GCCCC
   NC_007712.1       GG...GGU..CG.CG..GAAUA.U...CU.ACG.C..UG...GC.UGAA-.-ccacaacuauug......................................auauccuugaguGC.A...AGA....A.A-GA........G.............A.......G........C...........gG...C....G......G........C.......A..UGAAAA.UACUGG.U.GAUC.GGA.CCAUCC.UGGGUCGGCGAUAUGA.UGAUGUCCCAGA.............................................................GCCUGUA.U.CGC..CU.GCU...G.G..CG..C.A.G.C..GC...C....A.-..C.CC....U..G..G..CG.U..A.C..AgAU.AGACG.UG.AUG.GCCCC
   NC_007963.1       GG...CGU..CA.GC..GCCUA.C...CU.GGA.U..UG...GC.UGAAU.G..............................................................GCuG...ACG....A.UACC........G.............C.......C........A............C...C....U......C........C.......C..CGCGCC.UGCUCG.U.CGUC.GGC.CCCUCG.UGGGUCGGCGACAUGG.UCAUGGCCCAGA.............................................................GU-CUGU.U.CAU.gAC.GCU...C.A..AG..G.C.G.C..AU...C....A.C..C.CC....G..A..G..GC.C..U.A..U.AU.CGGGG.UG.AUG.GCGCC
   NC_008709.1       GG...UAC..UG.CU..GAAUA.U...AU.GGC.U..UG...GC.UAAAC.A..............................................................GA.U...AAG....U.UGAA........U.............A.......A........A............U...A....-......A........A.......A..UGAAAA.UAUUAG.U.UAUC.GGU.CCUUCU.UGGGUCGGCGAUAUGG.UGAUGUCGCAAU.............................................................GUUUAUA.U.AAA..UU.AUU...A.A..AA..C.A.G.C..AA...U....A.U..C.CC....C..A..G..GC.A..C.A..A.CU.UGAUG.UU.UUG.GCACC
   NC_008781.1       CG...CGC..AGgCCcuGCAUG.C...GU.CCG.A..UA...UU.CACAU.C..............................................................GA.G...ACC....A.AUCC........G.............G.......G........C............G...A....G......G........A.......G..UU----.-CAGCC.G.CAUC.CGC.CUGCGC.CGCGACGGCGACCUGG.AGCUGUACCAGA.............................................................AGCUC--.U.CGC..CC.CGG...C.U..GC..G.C.G.C.gGC...G....A.U..G.-G....U..G..U..CG.C..G.C..-.AU.CAAGG.UG.AUG.GCGCG
   NC_009792.1       GG...CGU..AA.CG..GAGUA.U...AU.GGC.C..UG...GC.UGAAU.C..............................................................GC.G...ACG....C.GUAA........G.............A.......A........G............-...A....A......A........C.......A..UGAAAA.UACUGG.U.GAUU.GGU.CCGUCC.UGGGUAGGCGACAUGA.UGAUGUCGCAAA.............................................................GUCUCUA.U.CGC..AC.GCU...C.A..AG..G.C.G.C..GC...U....A.U..C.CC....C..A..G..GC.G..A.U..A.AU.CGACG.UG.AUG.GCGCC
   NC_010554.1       GG...UGU..UG.CU..CUUUA.U...AU.-GC.A..AU..gGU.UAAAU.C..............................................................AG.G...AUA....A.GUAA........U.............C.......G........C............G...G....U......U........U.......A..UGAAAA.UUUUUG.U.GGUA.GGG.CCUUCU.UGGGUUGGGGAUAUGA.UGAUGUCCCAAA.............................................................GCCUAUA.U.CGU..AC.AUU...A.A..AA..G.C.G.U..UA...C....A.U..C.CU....G..C..G..GC.A..A.C..U.AU.UGAUG.UG.AUG.GCACC
   NC_010694.1       GG...UGU..CG.CG..GACUA.U...AU.GGC.G..UG...GC.UCAAC.C..............................................................GU.A...ACG....C.GUAA........G.............A.......Gg.....cgG............U...U....C......G........Ca.....gA..UGAAAA.UUCUGG.U.UAUC.GGC.CCUUCC.UGGGUCGGCGAUAUGA.UGAUGUCACAGA.............................................................GUCUCUA.U.CGC..AC.CCU...C.A..A-..-.-.-.A..GC...CgaaaA.U..C.CU....G..A..A..GC.G..G.U..U.AU.UGAUG.UG.AUG.GCACC
   NC_012691.1       GG...UGU..UG.CU..GAAUA.C...AU.GGC.G..UG...GC.UGAA-.-caaauaaaagcucucaggcucucaaccuaauaaacguauccaaaagcauaguccugauuaagGC.U...AUG....C.UUAA........U.............U.......U........U............U...A....U......G........U.......G..-GAACA.CACA--.-.UGCC.AGU.AAGCAG.UGAACAAGUAAAAUCCcUGAUCAUUCAAA.............................................................GUUGCUA.U.UUU..UU.GUU...C.G..GU..G.U.A.C..UC...U....G.U..A.--....U..-..-..-C.A..G.U..A.CG.AGAAG.UG.GUU.ACUCC
   NC_012880.1       GG...CGU..GG.CC..GAUUA.U...AU.GGC.C..UG...GC.UGAAU.-cgcagcgucuga......................................uuucgcucuagcGC.A...AGG....A.ACCU........C.............U.......A........A............C...G....G......U........U.......A..UGAAAA.UUCUGG.U.UAUC.GGC.CCGUCU.UGGGUGGGCGAUAUGA.UGAUGUCCCACA.............................................................GUCUGUA.U.CGC..AC.CCU...U.A..AG..G.CcG.A..GC...-....A.U..C.CG....G..A..U..GC.C..A.U..C.AU.UGACG.UG.AUG.GCUCC
   NC_012912.1       GG...GGU..GG.CC..GACUA.U...CU.GGC.C..UG...GC.UGAA-.-ccgcaaagccu.......................................gauuugcuuuacCC.U...AAG....G.AAAC........U.............C.......G........A............A...C....G......G........U.......A..UGAAAA.UUCUGG.U.UAUC.GGU.CCUUCC.UGGGUGGGCGAUAUGA.UGAUGUCGCACA.............................................................GCCUUUA.C.CGC..--.ACC...C.U..GA..A.G.G.C..CG...A....A.C..A.CC....C..G..G..AC.GccA.U..C.AU.UGACG.UG.AUG.GCGCC
   NC_012962.1       GG...CGU..AA.CG..GAAUA.U...AU.GCA.U..UG...GC.UCAAU.C..............................................................AG.G...AUA....A.GUAA........U.............C.......U........A............U...U....C......G........C......uA..UGAAAA.UAUUGG.U.GAUC.GGC.CCUUCG.UGGGUGGGUGACAUGA.UGAUGUCACAAA.............................................................GCCUUUA.C.CGA..AC.AUU...A.A..A-..-.G.G.C..UU...U....G.U.aC.CC....U..A..A..UG.C..A.G.gA.AU.UGAUG.UU.AUG.GCACC
   NC_013592.1       GG...GGU..CG.CC..GACUA.U...AU.GGC.C..UG...GC.UGAA-.-ccguaaagccug......................................acucacuuugccGU.A...A-G....G.AAAC........A.............C.......G........A............A...C....G......G........U.......A..UGAAAA.UUCUGG.U.UAUC.GGU.CCUUCC.UGGGUGGGCGAUAUGA.UGAUGUCGCACA.............................................................GCCUUUA.C.CG-..-A.ACC...C.U..GA..A.G.G.C..CG...A....A.C..A.CC....C..G..G..AC.GccA.U..C.AU.UGACG.UG.AUG.GCACC
   NC_013961.1       GG...UGU..CG.CG..GACUA.U...AU.GGC.G..UG...GU.UGAAC.C..............................................................GU.A...ACG....C.GUAA........G.............A.......Gg.....cgG............U...C....C......G........Ca.....gA..UGAAAA.UUCUGG.U.UAUC.GGC.CCUUCA.UGGGUCGGCGAUAUGA.UGAUGUCACACA.............................................................GUCUCUA.U.CGC..AC.---...C.C..UG..A.A.G.A..CC...Ga.aaA.U..C.CU....G..A..A..AC.G..G.U..C.AU.CGAUG.UG.AUG.GCGCC
   NC_014306.1       GG...CGU..CG.CU..GAAUA.U...AU.GGC.A..UG...GC.UGAAC.C..............................................................GC.A...AGG....C.GUAA........C.............G.......G........G............A...C....A......Auuc.cggcA.......A..UGAAGA.UUCUGG.U.AAUC.GGC.CCUUCA.UGGGUUGGCGAUAUGA.UGAUGUCGCAAA.............................................................GUCUCUA.U.CGC..AC.GUU...G.A..AG..G.C.G.-..GC...U....G.A..A.CC....C.gA..C..GC.G..A.U..A.AU.UGAUG.UG.AUG.GCACC
   NC_014500.1       GG...GGU..CG.CC..GACUA.U...CU.GGC.U..UG...GC.UGAA-.-ccgcaacgccug......................................auucgcuuugccGU.A...A-G....G.AAAC........A.............C.......G........A............A...C....G......G........U.......A..UGAAAA.UUCUGG.U.UAUC.GGU.CCUUCC.UGGGUGGGCGACAUGA.UGAUGUCGCACA.............................................................GUCUUUA.C.CGC..--.ACC...C.U..GA..A.G.G.C..CG...A....A.C..A.CC....C..G..GacGC.C..A.U..C.AU.CGAUG.UG.AUG.GCGCC
   NC_014532.2       GG...UGU..GA.AG..GCCUA.U...CU.GGA.G..UG...GC.UGAAU.-..............................................................GC.C...-UG....A.GGCC........G.............C.......U........C............C...C....G......G........C.......G..AGCGCA.UCCUGG.U.CGUC.GGC.CCGUCC.UGGGUCGGCGACAUGG.UCAUGGCCCAGA.............................................................G--CCUG.U.UCAagAC.CCU...C.A..AG..G.C.G.A..GG...C....A.G..-.CC...gG..A..C..GC.C..A.G..G.AU.CGGCG.UC.GUG.GCGCC
   NC_015567.1       GG...CGU..GA.AA..GAGUA.C...AU.GGC.C..UG...GU.UGAAC.C..............................................................GC.A...CCG....C.UUAA........Gcuga....aggaaA.......Uc......aC............U...C....-a...ggG........U.......A..UGAAAA.UACUGG.U.UAUC.GGC.CCUUCG.UGGGUUGGCGAUAUGA.UGAUGUCGCAAA.............................................................GUCUCUA.C.CGC..--.ACC...C.-..UG..A.A.G.-..GC...Cg..aG.C..A.CC....C..GacA..GC.G..G.A..A.AU.UGACG.UG.AUG.GCACC
   NC_015968.1       GG...CGU..AA.CG..GAAUA.U...AU.GGC.C..UG...GC.UGAAC.C..............................................................GC.G...ACG....C.GUAA........G.............A.......A........G............U...A....A......G........C.......A..UGAAGA.UACUGG.U.GAUC.GGC.CCGUCA.UGGGUGGGCGACAUGA.UGAUGUCGCAAA.............................................................GUCUCUA.U.CGC..AC.GCU...C.A..AG..G.C.G.C..GC...U....A.U..C.CC....C..A..G..GC.G..A.U..A.AU.CGACG.UG.AUG.GCACC
   NC_017554.1       GG...CGU..UU.CU..GAAUA.U...AU.GGU.U..UG...GU.UAAAU.C..............................................................GC.A...ACG....U.CUAA........A.............G.......G........A............A...U....A......GauaccgguA.......A..UGAAAA.UUCUGG.U.GAUC.GGC.CCGUCG.UGGGUCGGCGAUAUGA.UGAUGUCGCAAA.............................................................GUCUCUA.U.CGU..AC.CCU...C.A..AG..G.C.C.G..AA...C....A.U..C.CU....G..A..C..GC.A..G.U..G.AU.UGAUG.UG.AUG.GCACC
   NC_017857.3       GG...UGU..GG.UG..U-UUA.-...UU.UAU.C..UG...GC.UC---.-acaguacgc...........................................ugcauuaauaGC.G...AAU....G.ACUG........G.............C.......A........C............U...A....A......A........C.......A..CGAUA-.UUUUGA.U.CAUU.GGC.CCAUCA.UGGGUCGGUGAUAUGG.UGAUGGCGCA--.............................................................AUCUUUAuU.UGC.uGC.GCU...U.A..AG..C.A.A.C..GC...U....A.-..-.UC....C..A..G..AC.GgcA.A..U.AU.UGAUG.UG.UUG.GCGCC
   NC_017910.1       GG...GGU..AA.CG..GAAUA.C...AU.GGA.C..UG...GC.UGAAC.C..............................................................GC.A...AGG....C.GUAA........C.............G.......G........U............U...AcuggC......G........U.......A..UGAAAA.UUCUGG.U.GAUU.GGC.CCGUCA.UGGGUGGGCGACAUGA.UGAUGUCGCAAA.............................................................GUCUGUA.U.CGC..AC.GCU...C.A..GG..G.C.G.C..GU...U....A.U..C.CC....C..A..G..GC.G..A.U..A.AU.UGAUG.UG.AUG.GCACC
   NC_018419.1       GG...CGU..CC.CG..GAAUA.U...UU.ACG.A..UG...GC.UGAA-.-ccauaacgacugau..................................aucguuuagggaauGU.A...AAG....A.GACA........A.............A.......G........C............-...-....-......-........C.......A..UGAAAA.UACUGG.U.AAUC.GGA.GCAUCU.UGGGUGGGUGAUGCUA.UGAUGUCCCAAA.............................................................GCCUCUA.U.CGU..CU.CCU...C.A..UG..C.A.A.C..GC...C....A.U..C.CU....A..A..U..GC.G..A.A..G.AU.UGAUG.UC.AUG.GCUCC
   NC_021870.1       GG...GGU..AA.CG..GAAUA.U...AU.GGC.C..UG...GC.UGAAC.C..............................................................GC.G...ACG....C.GUAA........G.............-.......-........-............-...-....-......-........U.......A..UGAAAA.UUUUGG.U.CAUA.GGC.CCAUCC.UGGGUAGGCGACAUGA.UGAUGUCGCAAA.............................................................GCCUCUA.C.CGU..AC.GCU...C.A..AG..G.C.G.C..GC...U....A.U..C.CU....C..A..G..GC.A..A.U..A.AU.CGACG.UG.AUG.GCACC
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   NZ_AP024883.1     --...---..--.--..-----.C...GC.AGA.U..GG...U-.-----.-acuaugccccca......................................auuuagaugagu-A.G...UUG....U.AAAA........U.............C.......-........A............U...G....C......A........A.......A..UGAAGA.UUCUGG.U.AAUC.GGU.CCCUCA.UGGGUAGGGGAUAUGG.UGAUGUCACAGA.............................................................GUUUGUA.U.CGU..GA.ACU...C.A..AG..A.G.U.C..GU...C....A.-..-.CC....C..AaaA..UC.U..A.C..A.AU.UGAUG.UU.UUA.GCACC
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   NZ_CP006954.1     AA...AAC..GG.UA..AAAUU.C...UU.GC-.-..--...GC.AAAAC.U..............................................................GU.GuaaAGA....A.AUAG........G.............A.......G........C............U...C...aU......U........G.......A..UGAAUA.UUCUAG.U.UAUU.GCC.CCCUCU.UGGGUUGGUGAUAUGA.UGAUGUCGCACU.............................................................CGCUCUA.U.CAA..CA.ACU...C.A..AA..C.A.A.A..AC...U....A.U..C.CC....G..A..U..UG.C..G.A..A.AU.UGAUG.UG.AUG.G----
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   NZ_CP009787.1     GG...CGU..CA.AA..GAAUA.U...CU.GAC.C..UG...GC.UUAAU.-cgcucagucua........................................aaucacuugcuGC.A...AGG....A.AUUG........A.............U.......A........A............A...C....G......G........U.......A..UGAAAA.UACUGG.U.CAUC.GGC.CCUUCU.UGGGUUGGCGAUAUGA.UGAUGUCGCAAA.............................................................GUCUUUA.C.CGC..--.ACC...C.U..-G..A.A.G.-..GC...Cg..aA.U..A.UC....C..G..GcaGC.A..G.A..U.AU.UGAUG.UG.AUG.GCGCC
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   NZ_CP011254.1     GG...CGU..GA.AA..GAAUA.C...AU.GGC.C..UG...GU.UGAAU.-cgucccgcuua........................................agcgcugaagg--.-...---....A.AGUU........A.............C.......U........C............A...C....G......G........U.......A..UGAAAA.UACUGG.U.CAUU.GGC.CCUUCG.UGGGUUGGCGAUAUGA.UGAUGUCGCAAA.............................................................GUCUCUA.C.CGC..--.ACC...C.-..UG..A.A.G.-..GC...Cg..aG.U..A.CC....C..GucG..GC.A..G.A..A.AU.CGAUG.UG.AUG.GCACC
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   NZ_CP011835.1     --...---..--.--..-----.-...--.---.-..GG...GU.U----.-acgcugcuacgca....................................gcuaacccgcccuAC.G...AC-....C.AGAC........G.............A.......A........C............C...-....C......C........U.......A..UGAAUA.UCCUGA.U.CAUC.GGUcCCAGCU.-GGGUCGGCGACAUGG.UGAUGGCGCAG-.............................................................ACCCUGU.U.CGU..CU.GCC...U.G.aAG..C.A.G.C..GC...C....A.U..C.CC...gA..C..U..GC.G..-.A..A.AU.CGACG.UG.CUG.GCGCC
   NZ_CP012257.1     GG...GGU..CG.CA..GAGUA.C...AU.GGC.C..UG...GC.UGAGC.C..............................................................GC.G...ACG....C.AUAA........G.............C.......A........G............G...Cu.gaU......G........C.......A..UGAAAA.UACUGG.U.GAUC.GGC.CCGUCA.UGGGUGGGCGACAUGA.UGAUGUCGCAAA.............................................................GUCUCUA.U.CGC..AC.GCU...C.C..GG..G.C.C.C..GU...U....A.U..C.CG....C..A..G..GC.G..G.U..G.AU.UGACG.UG.AUG.GCGCC
   NZ_CP012264.1     GG...CGU..GA.CG..GAAUA.U...AU.GGC.C..UG...GC.UGAAC.C..............................................................GC.G...ACG....C.GUAA........C.............C.......G........C............A...G....C......Gau....ccU.......A..UGAAAA.UCCUGA.U.UAUC.GGC.CCGUCA.UGGGUGGGCGACAUGA.UGAUGUCGCAAA.............................................................GUCUCUA.U.CGC..AC.GCU...C.C..GG..G.C.C.C..GU...U....A.U..C.CG....C..A..G..GC.A..G.U..C.AU.CGACG.UG.AUG.GCGCC
   NZ_CP012266.1     GG...CGU..GG.CG..GAGUA.U...AU.GGC.C..UG...GC.UGAAC.C..............................................................GC.G...ACG....C.AUAA........G.............C.......Ag.....gcU............U...A....C......G........C.......A..UGAAAA.UACUGG.U.GAUC.GGC.CCGUCA.UGGGUGGGCGACAUGA.UGAUGUCGCAAA.............................................................GUCUCUA.U.CGC..AC.GCU...C.A..AG..G.C.C.C..GC...U....A.C..C.CG....C..A..G..GC.G..A.U..C.AU.CGACG.UG.AUG.GCGCC
   NZ_CP012268.1     GG...UGU..GA.CG..GAAUA.C...AU.GGC.C..UG...GC.UGAAC.C..............................................................GC.G...ACG....C.AUAA........G.............C.......Ag.....gcU............A...A....U......G........C.......A..UGAAAA.UAUUGG.U.GAUC.GGC.CCGUCA.UGGGUGGGCGACAUGA.UGAUGUCGCAAA.............................................................GUCUCUA.U.CGC..AC.GCU...C.A..AG..G.C.U.C..GC...U....A.U..C.CA....C..A..G..GC.G..A.U..C.AU.CGACG.UG.AUG.GCGCC
   NZ_CP012621.1     --...--U..UA.UA..AUC-A.U...GC.AACaU..AGc.aUG.GCUUU.A..............................................................CA.G...ACG....A.A---........U.............A.......U........A............U...C....C......G........G.......A..UGAAAA.CUCUAG.U.CAUA.GGC.CCCUCC.UGGGUGGGUGACAUGG.UGAUGUCCCAGA.............................................................GCCUCUA.U.AUC..--.ACC...C.U..-G..A.A.G.C..GC...U....-.U..G.CAccccG..G..U..GC.C..G.A..G.CU.GCAUG.UG.AUG.GCGCC
   NZ_CP012871.1     GG...CGU..GA.CG..GAAUA.U...AU.GGC.C..UG...GC.UGAAC.C..............................................................GC.G...ACG....C.GUAA........G.............A.......A........G............U...A....A......G........C.......A..UGAAAA.UACUGG.U.GAUC.GGC.CCGUCA.UGGGUGGGCGACAUGA.UGAUGUCGCAAA.............................................................GUCUCUA.U.CGC..AC.GCU...C.A..AG..G.C.G.C..GC...U....U.U..C.CC....C..A..G..GC.A..A.U..A.AU.CGAUG.UG.AUG.GCACC
   NZ_CP013124.1     CG...CGC..AG.CU..GAUUG.CaggCGgGCU.C..UG...AG.CCUCC.C..............................................................CG.G...UUG....U.UUUU........G.............G.......A........U............A...A....G......G........C.......A..UGAAGA.UACUGA.U.CAUC.GGC.CCUAGU.UGGGUAGGCGACAUGG.UAAUGGCGCAG-ac........................................................gcuGUUCCAG.U.-GC..CU.G--...-.A..AG..C.A.G.C..GC...C....A.-..-.CC....C..A..G..AG.U.gC.G..AgAU.CGACG.UG.CUG.GCGCC
   NZ_CP013940.1     GG...GGU..CG.CG..GAGUA.U...AU.GGC.C..UG...GC.UGAAC.C..............................................................GC.G...ACG....C.AUAA........G.............C.......A........G............G...Cu.gaU......G........C.......A..UGAAAA.UACUGG.U.GAUC.GGC.CCGUCA.UGGGUGGGCGACAUGA.UGAUGUCGCAAA.............................................................GUCUCUA.U.CGC..AC.GCU...C.C..GG..G.C.A.C..GC...U....A.U..C.CG....C..A..G..GC.G..G.U..G.AU.UGAUG.UG.AUG.GCGCC
   NZ_CP013990.1     GG...CGU..AA.CG..GAAUA.U...AU.GGC.C..UG...GC.UGAAC.C..............................................................GC.G...ACG....C.GUAA........Gg..........caA.......G........U............A...A....C......C........G.......A..UGAGAA.UACUGG.U.GAUU.GGC.CCGUCC.UGGGUGGGCGACAUGA.UGAUGUCGCAAA.............................................................GUCUCUA.U.CGC..AC.GCU...C.A..AG..G.C.G.C..GC...U....A.U..C.CC....C..A..G..GC.G..A.U..A.AU.CGACG.UG.AUG.GCACC
   NZ_CP014007.2     GG...CGU..AA.CC..GAGUA.U...AU.GGC.C..UG...GC.UGAAC.C..............................................................GC.G...ACG....C.GUAA........G.............-.......-........-............-...-....-......-........U.......A..UGAAAA.UUUUGG.U.CAUU.GGC.CCGUCC.UGGGUCGGCGACAUGA.UGAUGUCGCAAA.............................................................GUCUCUA.U.CGC..AC.GCU...C.A..AA..G.C.G.C..GC...U....U.U..C.CC....C..A..G..GC.G..A.U..A.AU.CGAUG.UG.AUG.GCACC
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   NZ_CP031416.1     --...CGC..CG.AA..GGGGU.G...AG.UGC.C..UA...UU.UA---.-..............................................................AA.G...UGG....C.UUGA........C.............G.......C........C............A...A....G......G........C.......A..UGAAGU.UUCUGG.U.AAUU.GGG.CCAUCU.UGGGUUGGCGAUAUGG.UGAUGGCCCA-G.............................................................GCCCUUU.U.CAU..CG.ACC...U.G..AA..AaA.A.C..GC...U....A.C..C.CG....G..A..G..GC.G..G.U..A.AU.UGAUG.UG.CUG.GCACC
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   NZ_CP033744.1     GG...CGU..AA.CG..GAAUA.U...AU.GGC.C..UG...GC.UGAAC.C..............................................................GC.G...ACG....C.AUAA........Gg..........caG.......G........C............A...A....U......C........U.......A..UGAGGA.UUCUGG.U.GGUU.GGC.CCGUCU.UGGGUGGGCGACAUGA.UGAUGUCGCAAA.............................................................GUCUCUA.U.CGC..AC.GCU...C.A..AG..G.C.G.C..GC...U....A.U..C.CC....C..A..G..GC.G..A.U..A.AU.CGACG.UG.AUG.GCACC
   NZ_CP033844.1     --...---..--.--..-----.-...--.---.-..-G...AA.CGAA-.-ggcagccaac.........................................gcagagacagcUU.G...AAG....G.AUGA........A.............A.......-........-............-...-....U......G........A.......A..UGAAGA.UACUGG.U.GGUG.GGC.CCGUCA.UGGGUGGGCGACAUGA.UGAUGUCGCAAA.............................................................GUCUCUA.U.CGU..AC.GCU...C.A..GG..G.C.G.C..GC...U....A.U..C.CC....C..A..G..GC.G..A.U..A.AU.CGACG.UG.AUG.GCGCC
   NZ_CP034035.1     GG...CGU..CG.CU..GAAUA.C...AU.GAC.C..UG...GU.UAAA-.-ccguucuguuuaaucgg............................acaaggaauagauaagcGC.G...AUG....A.AA-A........C.............A.......-........-............G...C....A......U........G.......A..UGAAAA.UCCUGG.U.CAUC.GGC.CCUUCA.UGGGUAGGCGAUAUGA.UGAUGUCGCAUA.............................................................GUCUCUA.U.CGC..AC.GCU...-.-..-G..A.A.G.-..GC...UgaacA.U..C.CG....C..A..A..GC.G..G.U..C.AU.CGACG.UG.AUG.GCGCC
   NZ_CP034036.1     GG...CGU..GG.CC..GAAUA.C...AU.GGC.C..UG...GC.UGAA-.-ccguaccgu............................................uuaagcgga-C.A...AGG....A.AGUA........G.............A.......U.......aA............G...C....G......G........U.......A..UGAAAA.UCCUGG.U.CAUC.GGC.CCUUCC.UGGGUAGGCGAUAUGA.UGAUGUCGCACA.............................................................GCCUGUA.U.CGC..AC.GCU...A.A..AG..G.C.G.C..AA...C....A.U..C.CG....C..A..A..GC.G..G.U..C.AU.UGACG.UG.AUG.GCGCC
   NZ_CP036175.1     --...---..--.--..-----.-...--.---.-..-G...AA.CGAA-.-ggcagccaac.........................................gcagagacagcUU.G...AAG....G.AUGA........A.............A.......-........-............-...-....U......G........A.......A..UGAAGA.UAUUGG.U.GGUA.GGC.CCGUCA.UGGGUGGGCGACAUGA.UGAUGUCGCAAA.............................................................GUCUCUA.U.CGU..AC.GCU...C.A..GG..G.C.G.C..GC...U....A.U..C.CC....C..A..G..GC.A..A.U..C.AU.CGACG.UG.AUG.GCACC
   NZ_CP037864.1     GG...AGC.uUA.CA.aGAGUA.A...GU.GAC.C..GG...AG.UGAA-.-cgcaggcagcca.....................................acgcagagacagcUU.G...AAG....G.AUGA........-.............-.......-........-............A...G....U......G........A.......A..UGAAGA.UUUUGG.U.GGUU.GGC.CCGUCC.UGGGUGGGCGACAUGA.UGAUGUCGCAAA.............................................................GUCUCUA.U.CGC..AC.GCU...C.A..AG..G.C.G.C..GC...U....A.U..C.CC....C..A..G..GC.A..A.U..A.AU.CGACG.UG.AUG.GCACC
   NZ_CP038155.1     GG...GGU..UG.CU..GACUA.U...AU.GCA.A..UG...GU.UAAAU.G..............................................................GC.A...AUG....A.UUAA........A.............U.......Gg......aA............A...U....A......G........U.......A..UGAAGA.UACUGG.U.AGUU.GGC.CCGUCA.UGGGUAGGCGAUAUGA.UGAUGUCGCAGA.............................................................GUCUUUA.C.CGU..AC.UU-...-.-..UG..A.A.GaC..CC...U....A.C..A.CC....C..A..GacGC.A..G.A..A.AU.UGAUG.UU.AUG.GCACC
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   NZ_CP038498.1     GG...CGU..AG.CG..GAAUA.U...AU.GAC.C..UG...GC.UGAA-.-ccguaccguu.........................................uaaucggauaaG-.G...AUU....C.AUAA........G.............-.......-........-............-...C....G......G........U.......A..UGAAAA.UUUUGG.U.CAUC.GGC.CCUUCC.UGGGUCGGCGAUAUGA.UGAUGUCGCACA.............................................................GCCUUUA.U.CGC..AC.AUU...-.-..-G..A.A.G.-..GC...Ug..aA.C..A.CC....C..G..GaaGC.G..G.U..C.AU.UGACG.UG.AUG.GCACC
   NZ_CP038613.1     GG...GGU..UG.CU..GAUUA.U...AU.GCA.A..UG...GU.UAAAU.U..............................................................GC.G...AUG....A.UUAA........A.............U.......Gg......aA............A...U....A......G........C.......A..UGAAGA.UAUUGG.U.CGUU.GGC.CCUUCA.UGGGUGGGUGAUAUGA.UGAUGUCGCAGA.............................................................GUCUUUA.C.CGU..--.ACU...U.-..UG..A.A.GaC..UC...U....A.C..A.CC....C..A..G..AG.GcaG.A..A.AU.UGAUG.UU.AUG.GCACC
   NZ_CP038662.1     GG...CGU..GA.AA..GAGUA.C...AU.GGC.C..UG...GU.UGAAC.C..............................................................GC.A...CCG....C.AUAA........GcugaaggaauuaaC.......G........C............U...G....G......G........U.......A..UGAAAA.UACUGG.U.UAUC.GGC.CCUUCU.UGGGUUGGCGACAUGA.UGAUGUCGCAAA.............................................................GUCUCUA.U.CGC..--.ACC...C.U..-G..A.A.G.-..GC...Cg..aA.U..A.CC....C..GucG..GC.G..G.A..G.AU.CGAUG.UG.AUG.GCGCC
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   NZ_CP040392.1     GG...CGU..CA.CC..GAGUA.U...AU.GGC.C..UG...GC.UGAAC.C..............................................................GC.G...ACG....C.GUAA........G.............-.......-........-............-...-....-......-........U.......A..UGAAAA.UUUUGG.U.CAUU.GGC.CCGUCA.UGGGUGGGCGACAUGA.UGAUGUCGCAAA.............................................................GUCUCUA.U.CGC..AC.GCU...C.A..AA..G.C.G.C..GC...U....U.U..C.CC....C..A..A..GC.G..A.U..A.AU.CGAUG.UG.AUG.GCACC
   NZ_CP040428.1     GG...GGU..UA.CG..GAGUA.U...AU.GAC.C..UG...GC.UAAAC.C..............................................................GU.G...ACG....C.UUAA........C.............G.......G........G............U...A....Ac...cuGg.....ccU.......A..UGAAAA.UACUGG.U.GAUC.GGC.CCAUCA.UGGGUGGGCGACAUGA.UGAUGUCGCAAA.............................................................GUCUCUA.C.CGC..AC.GCU...C.A..GG..G.C.G.C..GC...U....A.U..C.CC....C..A..A..GC.G..G.U..A.AU.CGAUG.UG.AUG.GCACC
   NZ_CP041247.1     GG...CGU..AA.CG..GAAUA.U...AU.GGC.C..UG...GC.UCAAC.C..............................................................GC.G...ACG....C.GUAA........G.............A.......C........A............-...U....A......A........C.......A..UGAAAA.UAUUGG.U.GGUU.GGC.CCGUCU.UGGGUGGGCGACAUGA.UGAUGUCGCAAA.............................................................GUCUCUA.U.CGC..AC.GCU...C.A..GG..G.C.G.C..GC...U....A.U..C.CC....C..A..G..GC.G..A.U..A.AU.CGACG.UG.AUG.GCACC
   NZ_CP041764.1     GG...CGU..CA.AA..GAGUA.C...AU.GGC.C..UG...GC.UCAAC.C..............................................................GC.A...CCG....C.UUAA........Gcugaag.ggaaucU.......G........C............A...C....G......G........U.......A..UGAAAA.UACUGG.U.UAUC.GGC.CCUUCC.UGGGUUGGCGAUAUGA.UGAUGUCGCAAA.............................................................GUCUUUA.C.CGC..--.ACC...C.U..GA..A.G.-.-..GC...Cg..aG.U..A.CC....C..GucA..GC.A..G.A..G.AU.CGACG.UC.AUG.GCUCC
   NZ_CP041925.1     GG...CGU..AA.CG..GAAUA.U...AU.GGC.C..UG...GC.UCAAC.C..............................................................GC.G...ACG....C.GUAA........G.............A.......A........A............C...A....A......G........C.......A..UGAAAA.UAUUGG.U.GAUA.GGC.CCGUCU.UGGGUGGGCGACAUGA.UGAUGUCGCAAA.............................................................GUCUUUA.U.CGU..AC.GCU...C.A..GG..G.C.G.C..GC...U....A.U..C.CC....C..A..G..GC.G..A.U..U.AU.CGACG.UG.AUG.GCGCC
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   NZ_CP042425.1     GG...CGU..AC.UG..GAAUG.G...CU.G--.-..--...--.---AU.C..............................................................CC.G...CCG....G.---C........G.............U.......G........G............U...U....U......C........U.......A..CCAACG.UAAUGG.C.GCGC.GGC.CCGGCG.UAAGCGGGCCGCGUCU.UGAUA-UGCAAA.............................................................GAC---A.C.GGC..CC.GCU...U.A..CG..C.C.G.G..GC...C...gC.G..CgCC....A..A..-..--.G..A.U..U.AU.UUCUG.CU.UCG.ACGCC
   NZ_CP043318.1     GG...CGU..AA.CG..GAAUA.U...AU.GGC.C..UG...GC.UGAAC.C..............................................................GC.G...ACG....C.GUAA........G.............-.......-........-............-...-....-......-........U.......A..UGAAAA.UUCUGG.U.GAUC.GGC.CCGUCA.UGGGUGGGCGACAUGA.UGAUGUCGCAAA.............................................................GUCUCUA.U.CGC..AC.GCU...C.A..AG..G.C.G.C..GU...U....A.U..C.CC....C..A..G..GC.G..A.U..A.AU.CGACG.UG.AUG.GCACC
   NZ_CP043342.1     GG...CGU..GA.CG..GAAUA.U...AU.GGC.C..UG...GC.UGAAC.C..............................................................GC.G...ACG....C.AUAA........G.............-.......-........-............-...-....-......-........U.......A..UGAAAA.UUUUGG.U.GGUA.GGC.CCGUCC.UGGGUGGGCGACAUGA.UGAUGUCGCAAA.............................................................GUCUCUA.U.CGC..AC.GCU...C.A..AG..G.C.G.C..GC...U....A.U..C.CC....C..A..G..GC.G..A.U..A.AU.CGACG.UG.AUG.GCACC
   NZ_CP043727.1     GG...CGU..CA.AA..GAAUA.C...UU.GGC.C..UG...GC.UCAAU.-cgcucagucua........................................aaucacuugcuGC.A...AGG....A.AUUG........A.............U.......A........A............A...C....G......G........U.......A..UGAAAA.UACUGG.U.CAUU.-GG.CCCUUCuUGGGUUGGCGAUAUGA.UGAUGUCGCAAA.............................................................GUCUUUA.C.CGC..--.ACC...C.U..GA..A.G.G.C..CA...A....A.U..A.UC....C..G..GcaGC.A..G.A..A.AU.UGAUG.UG.AUG.GCACC
   NZ_CP044098.1     GG...CGU..CA.CG..GAAUA.U...AU.GGC.C..UG...GC.UGAAC.C..............................................................GC.G...ACG....C.GUAA........G.............-.......-........-............-...-....-......-........U.......A..UGAAAA.UUUUGG.U.GGUU.GGC.CCGUCU.UGGGUGGGCGACAUGA.UGAUGUCGCAAA.............................................................GUCUCUA.U.CGC..AC.GCU...C.A..AG..G.C.G.C..GC...U....A.U..C.CC....C..A..G..GC.G..A.U..A.AU.CGACG.UG.AUG.GCACC
   NZ_CP044101.1     GG...CGU..AA.CG..GAAUA.U...AU.GGC.C..UG...GC.UGAAC.C..............................................................GC.G...ACG....C.GUAA........G.............A.......A........G............U...U....A......G........C.......A..UGAAAA.UACUGG.U.GAUC.GGC.CCGUCA.UGGGUGGGCGACAUGA.UGAUGUCGCAAA.............................................................GUCUCUA.U.CGC..AC.GCU...C.A..AG..G.C.G.C..GC...U....A.U..C.CC....C..A..G..GC.G..A.U..A.AU.CGACG.UG.AUG.GCACC
   NZ_CP044218.1     --...---..--.-G..GCCAG.U...UC.CGC.G..AU...GU.CGAA-.-accggc.................................................gugaaagAC.U...AUG....U.CGAA........U.............G.......G........C............Ug.aA....A......G........C.......C..CGACGA.UCCUCG.U.GAUC.GGC.CCCCGC.UGGGUGGGCGACAUGG.UCAUGGCGCA--.............................................................GUGCCUG.U.UCU..CG.GCA...C.U..GA..A.G.C.A..GC...Uu..uA.U..C.CA....A..A..C..GC.C..G.G..C.AU.CGACG.UG.AUG.GCGCC
   NZ_CP045300.1     GG...CGU..CA.CC..GAGUA.U...AU.GGC.C..UG...GC.UGAAC.C..............................................................GC.G...ACG....C.GUAA........G.............-.......-........-............-...-....-......-........U.......A..UGAAAA.UUUUGG.U.GAUU.GGC.CCGUCA.UGGGUAGGCGACAUGA.UGAUGUCGCAAA.............................................................GUCUCUA.U.CGC..AC.GCU...C.A..AA..G.C.G.C..GC...U....U.U..C.CC....C..A..G..GC.G..A.U..A.AU.CGAUG.UG.AUG.GCACC
   NZ_CP045720.1     GG...CGU..UG.CU..GACUA.U...AU.GGU.C..UG...GC.UGAAC.C..............................................................GC.A...ACG....C.AUAA........A.............G.......G.......aA............G...C....U......G........CuccggcgA..UGAAAA.UUCUGG.U.AAUC.GGC.CCGUCA.UGGGUCGGCGAUAUGA.UGAUGUCGCAAA.............................................................GUCUCUA.U.CGC..AC.ACU...C.A.aAG..C.C.G.A..A-...C....A.U..C.CG....G..A..U..GC.A..G.U..G.AU.UGACG.UG.AUG.GCGCC
   NZ_CP045771.1     GG...UGU..AA.CG..GAAUA.U...AU.GGC.C..UG...GC.UGAAC.C..............................................................GC.G...ACG....C.GUAA........G.............-.......-........-............-...-....-......-........U.......A..UGAAAA.UUUUGG.U.GGUA.GGC.CCGUCC.UGGGUGGGCGACAUGA.UGAUGUCGCAAA.............................................................GUCUCUA.U.CGC..AC.GCU...U.A..AG..G.C.G.C..GC...U....A.U..C.CC....C..A..G..GC.G..A.U..A.AU.CGACG.UG.AUG.GCACC
   NZ_CP045783.1     GG...CGU..AA.CG..GAGUA.U...AU.GGC.C..UG...GC.UGAAU.C..............................................................GG.G...AUG....C.GUAA........G.............A.......G........A............U...A....-......A........C.......A..UGAAAA.UUCUGG.U.GGUA.GGC.CCGUCU.UGGGUGGGCGACAUGA.UGAUGUCGCAAA.............................................................GUCUUUA.U.CGU..AC.GCU...C.A..GG..G.C.G.C..GC...U....A.U..C.CC....C..A..G..GC.G..A.U..U.AU.CGACG.UG.AUG.GCGCC
   NZ_CP045845.1     GG...CGU..AA.CG..GAAUA.U...AU.GGC.C..UG...GU.UGAAC.C..............................................................GC.G...AAG....C.GUAA........G.............A.......A........G............U...C....A......G........C.......A..UGAAAA.UACUGG.U.GGUC.GGC.CCGUCA.UGGGUGGGCGACAUGA.UGAUGUCGCAAA.............................................................GUCUCUA.U.CGC..AC.GCU...C.A..AG..G.C.G.C..GC...U....A.U..C.CC....C..A..G..GC.G..A.U..A.AU.CGACG.UG.AUG.GCACC
   NZ_CP045889.1     GG...GGU..GC.CU..GAAUA.U...UU.ACG.C..UG...GC.UCAA-.-ccauacaccuug......................................auuuccuucaagGC.A...CUA....A.CGAG........A.............A.......U........A............G...C....A......A........U.......A..UGAAAA.UACUGG.U.AAUC.GGA.CCAUCU.UGGGUCGGUGAUAUGA.UGAUGUCCCAGA.............................................................GUCUAUA.U.CGC..UU.GCU...G.A..UU..C.A.A.C..GC...U....A.U..-.CC....U..G..G..CG.C..AcA..G.AU.UGAUG.UA.AUA.GCUCC
   NZ_CP045929.1     GC...ACC.aCG.UG..GAGUG.C...AU.UGC.C..CU...CC.UGGAA.C..............................................................GG.G...ACG....A.AUGA........U.............C.......A........C............C...C....U......G........A.......U..UGAAUG.UCCGGG.C.---C.GUC.ACGUCC.AA-----GGAGGAUCG.UCGUGUGGCUUG.............................................................GCGUGAC.U.UC-..--.---...-.C..GG..G.C.G.C..GU...C....C.-..-.CC....G..A..G..GC.U..U.C..G.AU.UGCCG.UG.GUG.--UCC
   NZ_CP046268.1     GG...UAC..UA.UG..CCUUC.U...--.AAU.U..UA...GA.UGAG-.-..............................................................UC.G...UUC....U.AAAA........U.............C.......-........A............U...G....C......C........A.......A..UGAAAA.UCCUGA.U.AAUC.GGC.CCCUCA.UGGGUUGGAGAUAUGG.UGAUGUCACAGA.............................................................GUUUAUA.U.CGC..GA.ACU...C.A..AA..A.G.C.C..GU...C....A.-..-.UC....C..A..A..AC.GcaA.C..A.AU.UGAUG.UU.UUG.GCUCC
   NZ_CP046293.1     GG...CGU..CA.AA..GAAUA.U...CU.GGC.C..UG...GC.UCAAU.-cgcucagucua........................................aauuacuugcuGC.A...AGG....A.AUUG........A.............U.......A........A............A...C....G......G........U.......A..UGAAAA.UACUGG.U.CAUC.GGC.CCUUCU.UGGGUUGGCGAUAUGA.UGAUGUCGCAAA.............................................................GUCUUUA.C.CGU..--.ACC...C.U..-G..A.A.G.-..GC...Cg..aA.U..A.UC....C..G..GcaGC.A..G.A..U.AU.UGAUG.UG.AUG.GCACC
   NZ_CP046621.1     CG...AAC..GU.CU..GCAUA.C...--.GCC.C..GA..gGC.GAAA-.-..............................................................GC.G...GCG....U.-UGC........G.............U.......G........C............U...C....U......G........G.......U..AAAGGAuUGACGG.U.G---.GGA.GCGGGC.UUGCCCCGCGAUACGA.UGCUGCUGACAA.............................................................GCCGCAA.U.CGC..GG.GGC...A.A..GC..C.C.G.C..UC...C....U.A..C.--....C..C..G..GG.G..-.A..A.AU.CC-AC.AG.CAA.GCUCU
   NZ_CP047349.1     GG...CGU..AG.AG..CUUUA.U...AU.-GC.A..AU..gGU.UAAAU.C..............................................................AA.G...GUA....A.GUAA........U.............C.......A........C............U...G....U......U........U.......A..UGAAAA.UCUUUG.U.GGUA.GGG.CCUUCA.UGGGUCGGGGAUAUGA.UGAUGUCCCAAA.............................................................GUCUUUA.U.CGU..AC.AUU...G.A..--..A.A.G.C..AU...Ua..cA.U..C.CU....G..C..G..GC.A..A.C..G.AU.UGAUG.UG.AUG.GCACC
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   NZ_CP051548.1     --...---..--.--..-----.-...--.---.-..--...AA.-----.-caaaggcagcca.....................................acgcagagacagcUU.G...AAG....G.AUGA........-.............-.......-........-............A...G....U......G........A.......A..UGAAAA.UAUUGG.U.GAUC.GGC.CCGUCC.UGGGUGGGCGACAUGA.UGAUGUCGCAAA.............................................................GUCUCUA.U.CGC..AC.GCU...C.A..AA..G.C.G.C..GC...U....A.C..C.CC....C..A..G..GC.G..A.U..U.AU.CGACG.UG.AUG.GCACC
   NZ_CP051652.1     GG...CGU..GG.CG..GAAUA.U...AU.GGC.C..UG...GC.UGAA-.-ccguaccguu.........................................uaaucggauaaG-.G...AUU....C.AUAA........G.............-.......-........-............-...C....G......G........U.......A..UGAAAA.UUUUGG.U.CAUC.GGC.CCUUCC.UGGGUCGGCGAUAUGA.UGAUGUCGCACA.............................................................GCCUUUA.U.CGC..AC.ACU...G.A..--..-.A.G.-..GC...Ug..aA.C..A.CC....C..G..GaaGC.G..G.U..C.AU.UGACG.UG.AUG.GCGCC
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   NZ_CP054058.1     --...---..--.--..-----.-...--.---.-..-G...AA.UGAA-.-ggcagccaac.........................................gcagagacagcUU.G...AAG....G.AUGA........-.............-.......-........-............A...G....U......G........A.......A..UGAAGA.UAUUGG.U.GGUU.GGC.CCGUCA.UGGGUGGGCGACAUGA.UGAUGUCGCAAA.............................................................GUCUCUA.U.CGC..AC.GCU...C.A..AG..G.C.G.C..GC...U....A.U..C.CC....C..A..G..GC.G..A.U..C.AU.UGAUG.UG.AUG.GCACC
   NZ_CP055292.1     GG...UGU..AA.CG..GAAUA.C...AU.GGC.C..UG...GC.UGAAU.C..............................................................GC.G...ACG....C.AUAA........G.............A.......G........C............U...C....U......G........C.......A..UGAAAA.UACUGG.U.GAUC.GGC.CCGUCU.UGGGUUGGCGACAUGA.UGAUGUCGCAAA.............................................................GUCUCUA.U.CGC..AC.GCU...C.C..AG..G.C.G.C..GC...U....A.U..C.CC....C..A..G..GC.G..A.U..A.AU.CGAUG.UG.AUG.GCACC
   NZ_CP059082.1     GG...GGU..GA.AG..GCCUA.C...UU.GGG.G..UG...GU.UAAAU.G..............................................................GC.U...AAU....-.---U........C.............A.......G........C............U...C....A......G........C.......G..C----U.UGCUGG.U.GAUU.GGC.CCUUCG.UGGGUCGGUGACAUGG.UCAUGGCACAAA.............................................................G--CCUG.U.UUA..UG.ACC...U.U..AA..A.A.G.CccGC...C....A.G..C.CA....G..G..C..GC.G..A.C..G.AU.AGGGG.UG.GUU.GCACC
   NZ_CP059560.1     GG...CGU..GC.CG..AAAUA.C...AU.GGA.A..UG...GC.UGG--.-cgcagaa...............................................ccugggau--.G...ACG....C.A---........-.............-.......-........-............G...C....U......G........C.......-..GGCAGG.UCCUGG.U.GGUC.GGC.CCCUCG.UGGGUCGGGGACAUGG.UGAUGGCGCAGA.............................................................GCCUC--.U.UCA..UG.ACC...C.U..UC..A.G.G.C..GG...A....G.G..G.CC....C..G..U..GC.G..A.-..G.AU.CGACG.UG.CUC.GCGCC
   NZ_CP059690.1     GG...UGU..CG.AG..CUUUA.U...AU.-GC.A..AU..gGU.UAAAU.C..............................................................AA.G...GUA....A.GUAA........U.............C.......G........C............U...G....U......U........U.......A..UGAAAA.UCUUUG.U.GGUA.GGG.CCUUCA.UGGGUCGGGGACAUGA.UGAUGUCCCAAA.............................................................GUCUUUA.U.CGU..AC.AUU...G.A..--..A.A.G.C..AU...Ua..cA.U..C.CU....G..C..G..GC.A..A.C..G.AU.UGAUG.UG.AUG.GCACC
   NZ_CP060401.1     GG...UGU..CG.CU..GAAUA.U...AU.GCA.A..UG...GC.UUAAU.C..............................................................AG.G...AUA....A.UUAG........U.............C.......G........A............C...U....U......C........U.......A..UGAAGA.UAUUGG.U.GAUC.GGC.CCAUCA.UGGGUAGGUGACAUGA.UGAUGUCACAAA.............................................................GCCUCUA.C.CGU..--.ACU...U.U..GA..A.A.G.A..UU...U....A.U.aC.CC....C..A..A..UG.C..A.G.aA.AU.UGAUG.UG.AUG.GCACC
   NZ_CP061081.1     GG...UGU..CC.AG..GAUUA.C...UU.AGG.U..UG...GCuUGAUA.C..............................................................AC.A...UGG....C.UAAA........U.............A.......-........-............-...-....-......-........-.......-..UUUA-A.------.U.AGUC.GGC.CCGUCU.UGGGUGGGUGACAUGG.UGAUGGCUCAAA.............................................................GUCUCUU.U.AUU..AC.ACU...A.A..AG..C.A.G.C..GU...G....A.U..G.AA....G..A..A..GC.A..A.U..U.AU.UGAUG.UC.AUU.GGGCC
   NZ_CP063425.1     GG...AGU..AA.CC..GAGUA.U...AU.GGC.C..UG...GC.UGAAC.C..............................................................GC.G...ACG....C.GUAA........G.............-.......-........-............-...-....-......-........U.......A..UGAAAA.UUUUGG.U.CAUU.GGC.CCGUCC.UGGGUCGGCGAUAUGA.UGAUGUCGCAGA.............................................................GUCUUUA.U.CGC..AC.GCU...U.A..AA..G.C.G.C..GC...U....U.U..C.CC....C..A..G..GC.G..A.U..A.AU.CGAUG.UG.AUG.GCACC
   NZ_CP065044.1     GG...CGU..GG.CG..GAAUA.U...AU.GGC.C..UG...GC.UGAA-.-ccguaccguu.........................................uaaucaaauaaG-.G...AUU....C.AUAA........G.............C.......G........-............-...-....-......G........U.......A..UGAAAA.UUUUGG.U.CAUC.GGC.CCUUCC.UGGGUCGGCGAUAUGA.UGAUGUCGCACA.............................................................GCCUUUA.U.CGC..AC.GUU...-.-..-G..A.A.G.-..GC...Ug..aA.C..A.CC....C..G..GaaGC.G..G.U..U.AU.UGACG.UG.AUG.GCGCC
   NZ_CP065178.1     GG...CGU..AG.CG..GAAUA.U...AU.GGC.C..UG...GC.UGAA-.-ccguaccguu.........................................uaaucggauaaG-.G...AUU....C.AUAA........G.............-.......-........-............-...C....G......G........U.......A..UGAAAA.UUUUGG.U.CAUC.GGC.CCUUCC.UGGGUCGGCGAUAUGA.UGAUGUCGCACA.............................................................GCCUUUA.U.CGC..AC.GUU...-.-..-G..A.A.G.-..GC...Ug..aA.C..A.CC....C..G..GaaGC.G..G.U..C.AU.UGACG.UG.AUG.GCACC
   NZ_CP065534.1     GG...CGU..AG.CC..GACUA.C...AU.GGC.C..UG...GC.UUAA-.-ccgcgacgcaua.....................................auccugcgugaccGU.A...GGG....G.AUC-........U.............C.......G........A............A...C....G......G........U.......A..UGAAAA.UUCUGG.U.AAUC.GGC.CCGUCC.UGGGUCGGCGACAUGA.UGAUGUCGCACA.............................................................GUCUUUA.U.CGC..AC.GCU...C.A..AG..G.C.C.G..AA...C....A.U..C.CG....G..A..U..GC.C..G.U..C.AU.CGACG.UG.AUG.GCGCC
   NZ_CP065626.1     GG...UGU..-G.CG.uGAAUA.C...AU.GGA.A..UG...GC.UAAA-.-ccguaagc.............................................ccuaauagaGU.A...AGG....A.AUUU........C.............-.......U........A............A...C....A......G........U.......A..UGAAAA.UACUGG.U.GAUC.GGA.CCGUCU.UGGGUCGGUGACAUGA.UGAUGUCACAGA.............................................................GUCUGUA.C.CGC..AC.CCU...G.A..AG..G.C.G.G..AA...U....A.C..C.CU....G..A..G..GC.A..G.A..A.AU.CGAUG.UG.AUG.GCACC
   NZ_CP065640.1     GG...CGU..CA.AA..GAGUA.U...AU.GGC.C..UG...GC.UCAAC.C..............................................................GC.A...CUG....C.UUAA........Gcugaag.ggaaucU.......G........C............A...C....G......G........U.......A..UGAAAA.UACUGG.U.UAUC.GGC.CCUUCC.UGGGUUGGCGAUAUGA.UGAUGUCGCAAA.............................................................GUCUUUA.C.CGC..--.ACC...C.U..GA..A.G.-.-..GC...Cg..aG.U..A.CC....C..GucA..GC.A..G.A..G.AU.CGACG.UG.AUG.GCUCC
   NZ_CP065838.1     GG...CGU..AA.CG..GAGUA.U...AU.GGC.C..UG...GC.UGAAU.C..............................................................GG.G...GCG....C.GUAA........G.............A.......G........A............U...A....-......A........C.......A..UGAAAA.UUCUGG.U.GGUA.GGC.CCGUCU.UGGGUGGGCGACAUGA.UGAUGUCGCAAA.............................................................GUCUUUA.U.CGU..AC.GCU...C.A..GG..G.C.G.C..GC...U....A.U..C.CC....C..A..G..GC.G..A.U..U.AU.CGACG.UG.AUG.GCGCC
   NZ_CP070290.1     GG...CGU..AA.CG..GAAUA.U...AU.GGC.C..UG...GC.UGAAU.C..............................................................GC.G...ACG....C.AUAA........G.............A.......G........C............A...C....U......G........C.......A..UGAAAA.UACUGG.U.GAUC.GGC.CCGUCU.UGGGUUGGCGACAUGA.UGAUGUCGCAAA.............................................................GUCUCUA.U.CGC..AC.GCU...C.C..AG..G.C.G.C..GC...U....A.U..C.CC....C..A..G..GC.G..A.U..A.AU.UGACG.UG.AUG.GCACC
   NZ_CP071070.1     --...---..--.--..-----.-...--.---.-..-G...AA.-----.-cgcaggcagcca.....................................acgcagagacagcUU.G...AAG....G.AUGA........-.............-.......-........-............A...G....U......G........A.......A..UGAAAA.UUUUGG.U.GAUC.GGC.CCGUCC.UGGGUGGGCGACAUGA.UGAUGUCGCAAA.............................................................GUCUCUA.C.CGC..AC.GCU...C.A..AG..G.C.G.C..GC...U....A.U..C.CC....C..A..G..GC.G..A.U..A.AU.CGACG.UG.AUG.GCGCC
   NZ_CP071320.1     GG...CGU..GA.AA..GAGUA.C...AU.GGC.C..UG...GU.UGAAC.C..............................................................GC.A...CCG....C.AUAA........GcugaaggaauuaaC.......G........C............U...G....G......G........U.......A..UGAAAA.UACUGG.U.UAUC.GGC.CCUUCU.UGGGUUGGCGACAUGA.UGAUGUCGCAAA.............................................................GUCUCUA.U.CGC..--.ACC...C.U..-G..A.A.G.-..GC...Cg..aA.U..A.UC....C..GacG..GC.G..G.A..G.AU.CGAUG.UG.AUG.GCGCC
   NZ_CP071383.1     GG...GGU..AA.CG..GAAUA.U...AU.GGC.C..UG...GC.UGAAC.C..............................................................GC.G...ACG....C.GUAA........Gg..........caG.......G........C............A...A....G......C........A.......A..UGAGAA.UACUGG.U.GAUC.GGC.CCGUCA.UGGGUGGGCGACAUGA.UGAUGUCGCAAA.............................................................GUCUCUA.U.CGC..AC.GCU...C.A..AG..G.C.G.C..GU...U....A.U..C.CC....C..A..G..GC.G..A.U..U.AU.UGAUG.UG.AUG.GCACC
   NZ_CP071405.1     GG...CGU..CG.CG..GAAUA.U...AU.GGU.C..UG...GC.UGAAU.C..............................................................GC.A...ACG....C.AUAA........A.............G.......G.......aA............G...C....U......G........CuccggcgA..UGAAAA.UUCUGG.U.AAUC.GGC.CCGUCG.UGGGUCGGCGAUAUGA.UGAUGUCGCAAA.............................................................GUCUCUA.U.CGC..AC.CCU...C.A..AA..G.C.C.G..AA...C....A.U..C.CC....G..A..U..GC.G..G.U..A.AU.UGACG.UG.AUG.GCACC
   NZ_CP071409.1     GG...UGU..AG.CA..GAGUA.U...AU.GGC.C..UG...GU.UGAAU.C..............................................................GC.A...GCG....U.UUAA........Gg..........aaG.......G........C............A...A....U......G........Ucg..gugA..UGAAAA.UUCUGG.U.UAUC.GGG.CCCUCA.UGGGUCGGCGAUAUGA.UGAUGUCGCAAA.............................................................GUCUCUA.U.CGU..--.ACC...C.U..UA..A.G.G.C..CG...Ga..aA.U..C.CC....G..A..U..GC.G..G.U..C.AU.UGAUG.UG.AUG.GCACC
   NZ_CP071586.1     GG...GGA..GG.CG..UAAA-.-...U-.-GC.C..UC...CC.-----.C..............................................................GG.U...UCG....U.UUUU........G.............G.......A........A............A...C....C......A........C.......A..UGAAUA.UUCUGAuC.GUUG.GGC.CCAGUU.-GGGUCGGUGACAUGG.UGAUGGCGCAGA.............................................................CACUCUU.U.CAG..UG.UCU...C.A..AG..C.A.G.C..GC...C....A.C..CcGC....A..A..U..GC.G..-.A..A.AU.CGACG.UC.CUG.GCCCC
   NZ_CP071802.1     GG...UGU..GA.AA..GAGUA.U...CU.GGC.C..UG...GU.UAAAU.-cgcccgauuua........................................gguuauucgcuGC.A...AGG....A.AU-U........G.............A.......U........A............A...C....G......G........U.......A..UGAAAA.UACUGG.U.CAUC.GGC.CCUUCU.UGGGUUGGCGAUAUGA.UGAUGUCGCAAA.............................................................GUUUAUA.C.CGC..--.ACC...C.U..-G..A.A.G.-..GC...Cg..aA.U..A.UC....C..G..GcaGC.A..G.A..G.AU.CGAUG.UG.AUG.GCACC
   NZ_CP072455.1     GG...UGU..UA.CC..GAAUA.U...AU.GCA.A..UG...GC.UCAAU.C..............................................................AG.G...AUA....A.UUAA........U.............C.......G........A............C...C....U......U........U.......A..UGAAGA.UAUUGG.U.GAUC.GGC.CCAUCG.UGGGUGGGUGACAUGA.UGAUGUCUCAAA.............................................................GCCUCUA.C.CGC..--.ACC...U.U..GA..A.G.G.C..UU...U....G.U..A.CC....C..AaaU..GC.A..G.A..A.AU.UGAUG.UG.AUG.GCACC
   NZ_CP072652.1     GG...GGU..GA.AA..GAGUA.C...AU.GGC.U..UG...GU.UGAAC.C..............................................................GU.A...CCG....UuAUAC........G.............C.......U........G............Aa.gG....A......A........U.......A..UGAAAA.UACUGG.U.UAUC.GGC.CCGUCA.UGGGUUGGCGACAUGA.UGAUGUCGCAGA.............................................................GUCUCUA.U.CGU..AC.--C...-.C..UG..A.A.G.-..GC...Cg..aA.U..A.UC....C..GucU..GC.G..G.A..A.AU.CGAUG.UG.AUG.GCGGC
   NZ_CP073236.1     GG...CGU..AA.CG..GAAUA.U...AU.GGC.C..UG...GC.UGAAC.C..............................................................GC.G...ACG....C.GUAA........G.............A.......A........G............C...A....A......G........C.......A..UGAAAA.UACUGG.U.GAUU.GGC.CCGUCU.UGGGUGGGCGACAUGA.UGAUGUCGCAAA.............................................................GUCUUUA.U.CGU..AC.GCU...C.A..GG..G.C.G.C..GC...U....A.U..C.CC....C..A..G..GC.G..A.U..C.AU.CGACG.UG.AUG.GCGCC
   NZ_CP073262.1     GG...CGU..GG.CA..GAAUA.U...AU.GGC.C..UG...GC.UCAAC.C..............................................................GC.A...ACG....C.AUAA........Ggaa......ggcgA.......U........A............C...C....G......G........C.......A..UGAAAA.UAUUGG.U.GAUU.GGC.CCGUCA.UGGGUCGGCGAUAUGA.UGAUGUCCCAAA.............................................................GUCUCUA.U.CGC..AC.CCU...C.A..AG..G.C.G.A..AC...C....A.U..C.CC....G..A..U..GC.G..G.U..A.AU.CGACG.UG.AUG.GCACC
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   NZ_CP085627.1     GG...UGU..GG.CA..GAGUA.U...AU.GGC.C..UG...GC.UGAAC.C..............................................................GU.A...AAG....C.GUAA........G.............A.......G.......gC............A...C....UguucggG........A.......A..UGAAAA.UUCUGG.U.UAUC.GGC.CCAUCG.UGGGUCGGCGAUAUGA.UGAUGUCGCAAA.............................................................GUCUCUA.U.CGC..AG.CCU...C.A.aAG..C.C.G.A..GC...-....A.C..C.CC....G..A..U..GC.C..G.U..C.AU.UGAUG.UG.AUG.GCACC
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   NZ_CP096199.1     UA...CAU..UG.UG..CUAUU.C...UC.AG-.-..--...CA.UCGAU.U..............................................................UG.U...AUG....C.AGAC........A.............U.......U........A............G...U....U......A........G.......A..UGAAAA.UCCUAA.U.CAUU.GGC.CCUUCG.UGGGUUGGAGACAUGG.UGAUGUCUCAAA.............................................................GCCUUUA.U.AUU..AC.GC-...-.-..UG..A.A.G.C.aAC...A....A.U..A.UCc..cG..U..A..GC.G..G.A..A.AU.UGAUG.UG.CUA.G----
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   NZ_CP109947.1     GG...CGU..GG.CG..GAAUA.C...AU.GGC.C..UG...GC.UGAA-.-ccguaccgugu.......................................gaucggauaaagGU.-...--U....G.AUAA........-.............-.......-........-............G...C....G......G........U.......A..UGAAAA.UUUUGG.U.CAUU.GGC.CCUUCC.UGGGUCGGCGAUAUGA.UGAUGUCGCACA.............................................................GCCUGUA.U.CGU..AC.GCU...G.A..AG..G.C.U.G..AA...C....A.C..C.CC....G..A..A..GC.G..G.C..C.AU.UGACG.UG.AUG.GCGCC
   NZ_FO704550.1     GG...UGU..CG.CU..GAAUA.U...AU.GCA.A..UG...GC.UCAAU.C..............................................................AG.G...AUA....A.UUAA........U.............C.......G........A............C...G....U......C........U.......A..UGAAGA.UAUUGG.U.GAUC.GGC.CCAUCA.UGGGUGGGCGACAUGA.UGAUGUCACAAA.............................................................GCCUCUA.C.CGU..--.ACU...U.U..GA..A.A.G.A..UU...U....G.U.aC.CC....C..G..A..UG.C.aG.A..A.AU.UGAUG.UG.AUG.GCACC
   NZ_FO704551.1     GG...UGU..CG.CU..GAAUA.U...AU.GCA.A..UG...GC.UCAAU.C..............................................................AG.G...AUA....A.UUAA........U.............C.......G........A............U...U....U......C........U.......A..UGAAGA.UAUUGG.U.GAUU.GGC.CCAUCA.UGGGUGGGUGACAUGA.UGAUGUCACAAA.............................................................GCCUCUA.C.CGU..AC.GUU...G.A..--..A.A.G.C..GU...U....A.UacC.CU....C..A..U..GC.A..G.A..C.AU.UGAUG.UG.AUG.GCACC
   NZ_LN999835.1     GG...AAU..CA.CA..GCAUA.U...UU.AUG.C..UG...GC.UGAAU.-gauuag..................................................ucaaaaAC.A...GAA....A.AGAA........G.............U.......G........-............G...C....U......G........C.......A..GGAAAA.UUUUGG.U.AAUU.GGC.CCUUCA.UGGAUUGGCGAUAUAA.UGAUGUCUCAAA.............................................................GCUUAUA.U.CGU..CU.GCU...G.G..UG..C.A.G.C..UU...C....A.-..-.GC....U..A..G..GU.GuuC.A..G.AU.AGAUG.UU.AUG.GCGCC
   NZ_LR134201.1     GG...GGU..UG.CG..GAAUA.C...AU.GAA.A..UG...GU.UAAAC.C..............................................................GC.G...ACG....C.AUAA........Gccg......ggcaG.......G........G............A...A....A......G........C.......A..UGAAAA.UUCUGG.U.GAUU.GGC.CCGUCA.UGGGUGGGCGACAUGA.UGAUGUCGCAAA.............................................................GUCUCUA.U.CGC..AC.GCU...C.A..AG..G.C.G.C..GU...U....A.U..C.CC....C..A..G..GC.G..A.U..A.AU.UGACG.UG.AUG.GCGCC
   NZ_LR134485.1     GG...CGU..AA.CG..GAAUA.U...AU.GGC.C..UG...GC.UGAAG.C..............................................................GC.G...ACG....C.UUAA........Gg..........caG.......G........C............A...A....U......C........U.......A..UGAGGA.UUCUGG.U.GGUU.GGC.CCGUCC.UGGGUGGGCGACAUGA.UGAUGUCGCAAA.............................................................GUCUCUA.U.CGC..AC.GCU...C.A..AG..G.C.G.C..GC...U....A.U..C.CC....C..A..G..GC.C..A.U..A.AU.CGACG.UG.AUG.GCACC
   NZ_LR134494.1     GG...CGU..GA.AA..GAGUA.C...AU.GGC.C..UG...GU.UAAAC.-cgcaccgcuuaag....................................cugaagggauuugAC.-...---....-.----........-.............-.......G........U............A...G....G......G........U.......A..UGAAAA.UACUGG.U.UAUC.GGC.CCUUCU.UGGGUUGGCGAUAUGA.UGAUGUCGCAAA.............................................................GUCUCUA.C.CGC..--.ACC...C.U..-G..A.A.G.-..GC...Cg..aG.C..A.CC....C..GacG..GC.A..G.A..A.AU.UGAUG.UG.AUG.GCACC
   NZ_LR217713.1     --...---..--.--..UAAAA.U...AG.GGG.U..UU...U-.-----.-agaauauauaaaaucacuc........................aauccuaccaugaaacggu-G.A...AAA....A.AUAA........G.............A.......-........-............-...-....-......G........A.......A..UGAAAA.UUCUAG.U.UAUA.GGG.CCUUCU.UGGAUUGGCGACAUGA.UGAUGUCACACA.............................................................GCCUGUA.U.CGU..AC.UUU...A.A..AA..A.C.A.A..AC...A....A.U..C.CU....A..A..A..AC.C..A.U..C.AU.UGAUG.UA.AUC.GCACC
   NZ_LR593887.1     GC...GG-..-G.CU..GAAU-.C...GC.-GG.C..GG...GC.UGAAU.U..............................................................GC.G...GCG....C.AUGC........A.............A.......G........C............C...U....-......G........C.......C..GACGAA.UCUCA-.-.----.---.UCGCCG.CGUGAUGCGGAAAUGC.UCAAAUCGCACC.............................................................-CAGCGG.U.UGG..CA.UCU...C.G..CG..G.C.G.C..--...-....-.-..-.AC....C..C..A..CC.-..G.C..A.AC.CAAGG.CG.AAC.-CCAC
   NZ_LR699007.1     GG...UGU..C-.CG.uGAAUA.U...AU.GGC.U..UG...GU.UAAAU.C..............................................................AG.G...GGA....A.UUAA........U............uA.......A........A............C...G....C......A........C.......A..UGAAAA.UUCUGG.U.GAUC.GGG.CCGUCG.UGGGUCGGUGAUAUGA.UGAUGUCACAAA.............................................................GCCUUUA.C.CGU..AC.CCU...G.A..AA..A.C.A.C..GU...U....A.U..C.CG....C..A..G..GC.A..A.C..A.AU.UGAUG.UG.AUG.GCACC
   NZ_LR861803.1     GU...GGU..UU.CG..CAA-A.C...GU.G--.-..--...GC.UGGGU.-..............................................................GU.A...ACG....C.AUCA........G.............A.......G........C............C...-....-......-........-.......A..UAAACC.CGUAGG.-.----.AGC.GCACCC.-GGGC--GCGACAUGG.CGUUACCGGUAA.............................................................GUCCC--.U.CGC..--.GCC...C.-..GG..G.U.G.C..GC...U....-.-..-.CC...u-..-..-..--.-..A.C..A.AAgGGCUG.GG.GUGcGCAGC
   NZ_LR890047.1     UA...CAA..A-.--..GCCUA.-...AA.AAU.U..UG...CG.UGAAU.C..............................................................-A.U...AAG....G.AAGA........G.............A.......G........C............A...C....A......G........C.......A..UGAAAA.UACUUA.U.CAUC.GGA.CCUUCA.UGGGUAGGAGAUAUGA.UAAUGUCGCAUA.............................................................GCUUGUA.C.--C..GA.ACC...U.U..AA..A.G.G.A..UC...A....A.A..A.UA....C..U..A..AU.A..C.U..A.AA.AUA--.-G.AUG.UUAUA
   NZ_LS483422.1     GG...UGU..AA.CU..GAAUA.-...UA.UGC.AguUG...-U.UGAAU.A..............................................................AA.A...AAG....A.CUAA........U.............U.......C........A............U...A....U......U........U.......A..UGAAGA.UACUCG.U.AAUA.GGU.CCCUCU.UGGGUGGGGGACAUGA.UGAUGUCACAAA.............................................................GCCUUUA.U.C--..GG.ACC...A.U..AA..A.G.G.C..GC...Ua..cA.U..C.CU....C..A..U..GC.U..C.A..A.AU.UGACG.UG.AUG.GCGCC
   NZ_LT615367.1     GG...GGU..GA.CU..GAAUA.C...CU.UGC.C..UG...GC.UUA--.-accgcagcguuu.....................................gauuugucuggccGU.A...AG-....G.AAAU........A.............C.......C........A............A...C....G......G........U.......A..UGAAAA.UUCUGG.U.CAUC.GGC.CCGUCG.UGGGUAGGCGACAUGA.UGAUGUCGCACA.............................................................GCCUGUA.U.CGC..AC.GCU...C.A..--..A.C.G.C..GC...A....A.U..A.CC....CgcA..A..GC.C..U.C..G.AU.UGAUG.UC.AUG.GCACC
   NZ_LT897836.1     GG...GGU..AA.UA..GAAUA.U...UU.AGG.C..UG...GU.UGAAU.-uaauaacca...........................................uuaauuuuguUU.A...AAA....C.AAAA........G.............A.......G........C............A...U....A......G.......uC.......A..UAAAAA.UACUGA.U.AAUC.GGA.CCAUCU.UGGGUCGGCGAUAUGA.UGCUGUCUCAAA.............................................................GCCUGUA.U.CUC..CU.-CU...-.U..AGcuA.A.G.C..GU...U....A.U..U.CU....A..A..U..GU.G..G.A..G.AU.UGAUG.UG.AUA.GCUCC
   NZ_LT906463.1     UC...AAU..AA.UA..AGAUG.A...-C.GGC.A..UU...UC.AGA-G.C..............................................................AA.G...AGU....A.AUAA........A.............-.......-........-............-...-....C......G........G.......A..UGAAUA.UUUUAG.U.AAUU.GGC.CCGUCU.UGGGUGGGCGAUAUGA.UGAUGUCGCAAA.............................................................GUCUGUA.U.CAA..CA.GUU...A.A..AA..A.U.C.C..AA...U....A.U..C.CC....A..A..U..GC.C..A.A..U.AU.CGAUG.UA.AUG.G----
   NZ_LT906479.1     GG...CGU..CA.AA..GAGUA.C...AU.GGC.C..UG...GU.UGAAC.C..............................................................GC.A...CCG....C.AUAA........Gcug......aagg-aauugacG........C............U...G....A......G........U.......A..UGAAAA.UACUGG.U.UAUC.GGC.CCUUCA.UGGGUUGGCGACAUGA.UGAUGUCGCAAA.............................................................GUCUCUA.C.CGC..AC.---...C.C..UG..A.A.G.-..GC...Cg..aG.C..A.CC....C..GucA..GC.G..G.A..G.AU.CGACG.UG.AUG.GCGCC


   Structure         ((...(((...(.((............((..((.(..((...((......................................................................)).....................................................................................................................((...(((..(((..(((((..((((..((((...((..(((.....................................................................)))))...).))).....)))...)....))..).).)....))...)....).)..).))....)..)..)..))....).)..........)).)......)))))


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rfaD-waaF-waaC-waaL



Position: 1026-1155, Conformation: #0







97% 90% 75% 50% Nucleotide present N N N Nucleotide identify E < 0.1 Base-pair covariation E < 0.05 Helix-level covariation 97% 90% 75%

R R Y R R U R Y Y R R Y Y R R R A U G A A R A U Y U R G U R U Y G G Y C C Y C U G G G U G G Y G A Y A U G R U G A U G C C A A G Y Y Y U R Y C R Y R Y Y R R R Y Y R Y C Y R R Y A U Y G A Y G U G R U G G C C C 5'