rbsD-rbsA-rbsC-rbsB-rbsZ-rbsK-rbsR



Position: 485-584, Conformation: #1







DMS reactivity > 1.0 0.0 0.4 0.7 G/U/No data
Position: 0 (position.label in template: 0.5')5' Position: 1 (position.label in template: 1.U) Reactivity: nanU Position: 2 (position.label in template: 2.A) Reactivity: nanA Position: 3 (position.label in template: 3.C) Reactivity: nanC Position: 4 (position.label in template: 4.U) Reactivity: nanU Position: 5 (position.label in template: 5.U) Reactivity: nanU Position: 6 (position.label in template: 6.C) Reactivity: nanC Position: 7 (position.label in template: 7.A) Reactivity: nanA Position: 8 (position.label in template: 8.G) Reactivity: nanG Position: 9 (position.label in template: 9.C) Reactivity: nanC Position: 10 (position.label in template: 10.U) Reactivity: nanU Position: 11 (position.label in template: 11.U) Reactivity: nanU Position: 12 (position.label in template: 12.A) Reactivity: nanA Position: 13 (position.label in template: 13.A) Reactivity: nanA Position: 14 (position.label in template: 14.A) Reactivity: nanA Position: 15 (position.label in template: 15.G) Reactivity: nanG Position: 16 (position.label in template: 16.G) Reactivity: nanG Position: 17 (position.label in template: 17.C) Reactivity: nanC Position: 18 (position.label in template: 18.A) Reactivity: nanA Position: 19 (position.label in template: 19.U) Reactivity: nanU Position: 20 (position.label in template: 20.C) Reactivity: nanC Position: 21 (position.label in template: 21.G) Reactivity: nanG Position: 22 (position.label in template: 22.A) Reactivity: nanA Position: 23 (position.label in template: 23.U) Reactivity: nanU Position: 24 (position.label in template: 24.A) Reactivity: nanA Position: 25 (position.label in template: 25.A) Reactivity: nanA Position: 26 (position.label in template: 26.A) Reactivity: nanA Position: 27 (position.label in template: 27.G) Reactivity: nanG Position: 28 (position.label in template: 28.C) Reactivity: nanC Position: 29 (position.label in template: 29.C) Reactivity: nanC Position: 30 (position.label in template: 30.U) Reactivity: nanU Position: 31 (position.label in template: 31.U) Reactivity: nanU Position: 32 (position.label in template: 32.C) Reactivity: 0C Position: 33 (position.label in template: 33.C) Reactivity: 0C Position: 34 (position.label in template: 34.C) Reactivity: 0.5C Position: 35 (position.label in template: 35.G) Reactivity: nanG Position: 36 (position.label in template: 36.G) Reactivity: nanG Position: 37 (position.label in template: 37.G) Reactivity: nanG Position: 38 (position.label in template: 38.C) Reactivity: 1C Position: 39 (position.label in template: 39.G) Reactivity: nanG Position: 40 (position.label in template: 40.U) Reactivity: nanU Position: 41 (position.label in template: 41.A) Reactivity: 0A Position: 42 (position.label in template: 42.A) Reactivity: 0A Position: 43 (position.label in template: 43.A) Reactivity: 1A Position: 44 (position.label in template: 44.A) Reactivity: 1A Position: 45 (position.label in template: 45.G) Reactivity: nanG Position: 46 (position.label in template: 46.C) Reactivity: 0C Position: 47 (position.label in template: 47.C) Reactivity: 0C Position: 48 (position.label in template: 48.C) Reactivity: 0C Position: 49 (position.label in template: 49.U) Reactivity: nanU Position: 50 (position.label in template: 50.C) Reactivity: 1C Position: 51 (position.label in template: 51.U) Reactivity: nanU Position: 52 (position.label in template: 52.C) Reactivity: 0.5C Position: 53 (position.label in template: 53.G) Reactivity: nanG Position: 54 (position.label in template: 54.G) Reactivity: nanG Position: 55 (position.label in template: 55.G) Reactivity: nanG Position: 56 (position.label in template: 56.C) Reactivity: 0C Position: 57 (position.label in template: 57.G) Reactivity: nanG Position: 58 (position.label in template: 58.C) Reactivity: 0.5C Position: 59 (position.label in template: 59.A) Reactivity: 0.5A Position: 60 (position.label in template: 60.G) Reactivity: nanG Position: 61 (position.label in template: 61.C) Reactivity: 0C Position: 62 (position.label in template: 62.G) Reactivity: nanG Position: 63 (position.label in template: 63.U) Reactivity: nanU Position: 64 (position.label in template: 64.U) Reactivity: nanU Position: 65 (position.label in template: 65.A) Reactivity: 0A Position: 66 (position.label in template: 66.A) Reactivity: 0A Position: 67 (position.label in template: 67.A) Reactivity: 0.5A Position: 68 (position.label in template: 68.U) Reactivity: nanU Position: 69 (position.label in template: 69.G) Reactivity: nanG Position: 70 (position.label in template: 70.U) Reactivity: nanU Position: 71 (position.label in template: 71.C) Reactivity: 0C Position: 72 (position.label in template: 72.U) Reactivity: nanU Position: 73 (position.label in template: 73.A) Reactivity: 0.5A Position: 74 (position.label in template: 74.U) Reactivity: nanU Position: 75 (position.label in template: 75.C) Reactivity: 0C Position: 76 (position.label in template: 76.C) Reactivity: 0C Position: 77 (position.label in template: 77.G) Reactivity: nanG Position: 78 (position.label in template: 78.G) Reactivity: nanG Position: 79 (position.label in template: 79.G) Reactivity: nanG Position: 80 (position.label in template: 80.C) Reactivity: 0C Position: 81 (position.label in template: 81.C) Reactivity: 0C Position: 82 (position.label in template: 82.G) Reactivity: nanG Position: 83 (position.label in template: 83.C) Reactivity: 0.5C Position: 84 (position.label in template: 84.G) Reactivity: nanG Position: 85 (position.label in template: 85.U) Reactivity: nanU Position: 86 (position.label in template: 86.G) Reactivity: nanG Position: 87 (position.label in template: 87.A) Reactivity: 0.5A Position: 88 (position.label in template: 88.U) Reactivity: nanU Position: 89 (position.label in template: 89.G) Reactivity: nanG Position: 90 (position.label in template: 90.G) Reactivity: nanG Position: 91 (position.label in template: 91.C) Reactivity: 0C Position: 92 (position.label in template: 92.G) Reactivity: nanG Position: 93 (position.label in template: 93.C) Reactivity: 0C Position: 94 (position.label in template: 94.U) Reactivity: nanU Position: 95 (position.label in template: 95.G) Reactivity: nanG Position: 96 (position.label in template: 96.G) Reactivity: nanG Position: 97 (position.label in template: 97.U) Reactivity: nanU Position: 98 (position.label in template: 98.G) Reactivity: nanG Position: 99 (position.label in template: 99.G) Reactivity: nanG Position: 100 (position.label in template: 100.G) Reactivity: nanG Position: 101 (position.label in template: 101.C) Reactivity: 0C Position: 102 (position.label in template: 102.G) Reactivity: nanG Position: 103 (position.label in template: 103.A) Reactivity: 0.5A Position: 104 (position.label in template: 104.A) Reactivity: 0A Position: 105 (position.label in template: 105.A) Reactivity: 0A Position: 106 (position.label in template: 106.A) Reactivity: 0A Position: 107 (position.label in template: 107.C) Reactivity: 0.5C Position: 108 (position.label in template: 108.G) Reactivity: nanG Position: 109 (position.label in template: 109.G) Reactivity: nanG Position: 110 (position.label in template: 110.C) Reactivity: 0C Position: 111 (position.label in template: 111.G) Reactivity: nanG Position: 112 (position.label in template: 112.C) Reactivity: nanC Position: 113 (position.label in template: 113.G) Reactivity: nanG Position: 114 (position.label in template: 114.G) Reactivity: nanG Position: 115 (position.label in template: 115.G) Reactivity: nanG Position: 116 (position.label in template: 116.U) Reactivity: nanU Position: 117 (position.label in template: 117.A) Reactivity: nanA Position: 118 (position.label in template: 118.A) Reactivity: nanA Position: 119 (position.label in template: 119.A) Reactivity: nanA Position: 120 (position.label in template: 120.U) Reactivity: nanU Position: 121 (position.label in template: 121.C) Reactivity: nanC Position: 122 (position.label in template: 122.C) Reactivity: nanC Position: 123 (position.label in template: 123.A) Reactivity: nanA Position: 124 (position.label in template: 124.C) Reactivity: nanC Position: 125 (position.label in template: 125.C) Reactivity: nanC Position: 126 (position.label in template: 126.A) Reactivity: nanA Position: 127 (position.label in template: 127.U) Reactivity: nanU Position: 128 (position.label in template: 128.G) Reactivity: nanG Position: 129 (position.label in template: 129.A) Reactivity: nanA Position: 130 (position.label in template: 130.U) Reactivity: nanU Position: 131 (position.label in template: 131.G) Reactivity: nanG Position: 132 (position.label in template: 132.A) Reactivity: nanA Position: 133 (position.label in template: 133.A) Reactivity: nanA Position: 134 (position.label in template: 134.A) Reactivity: nanA Position: 135 (position.label in template: 135.G) Reactivity: nanG Position: 136 (position.label in template: 136.U) Reactivity: nanU Position: 137 (position.label in template: 137.G) Reactivity: nanG Position: 138 (position.label in template: 138.C) Reactivity: nanC Position: 139 (position.label in template: 139.U) Reactivity: nanU Position: 140 (position.label in template: 140.U) Reactivity: nanU Position: 141 (position.label in template: 141.3')3' 10 20 30 50 100


rbsD-rbsA-rbsC-rbsB-rbsZ-rbsK-rbsR



Position: 485-584, Conformation: #1







Retained alignments:


   NC_004347.2       AC.C..U.U...A...-.-......-..-..A..A..AG..C.A..C...AG.A.A.U.CU.G..G...CC..--.-.-..-.-.-.-.-.-aagaguuauaaaag..........................ccgucagguuguuaa..-.-..-..-.-..-..-..-...A.G..A.U.....G....uC......A.....G...C...C...U.C...-...A...C.G.G..U.U....A...A.....A.A..C..G.G..G.U.CA....AG..UuG..U...............................................U...GG...C.-.CU.G..C..U.U.G.GCC..CAAA.CGGCGCAGGUAAA...ACU.........ACCACCUU...U...UA.C.AU.....G.GU
   NC_004605.1       AA.C..U.G...A...G.C......G..A..A..A..UC..G.A..A...AA.A.G.C.GU.U..C...CC..AG.G.U..G.U.A.A.A.G.........................................................G.C.gC..UaG..A..U..A...A.A..G.C.....G.....-......A.....G...C...C...-.U...G...A...A.U.G..U.A....U...A.....C.C..C..A.G..G.U.CG....UG..U.U..A...............................................U...GG...C.G.CU.C..A..U.G.G.GCG..AAAA.UGGGGCAGGCAAG...UCA.........ACUUUGAU...G...AA.A.GU.....G.CU
   NC_005126.1       AA.C..U.A...A...A.A......G..G..A..A..UU..A.G..U...AA.A.U.C.UU.U..U...CC..UG.G.U..G.U.C.A.A.A.........................................................G.C..A..U.U..A..U..C...U.G..G.U.....G.....C......G.....G...C...A...U.U...A...C...G.U.G..U.U....U...A.....U.C..C..A.G..G.U.AA....AG..U.G..A...............................................U...GG...C.A.CU.G..G..U.G.G.GAG..AGAA.UGGUGCAGGUAAG...UCC.........ACGAUGAU...G...AA.A.GU.....G.UU
   NC_005966.1       --.-..-.-...-...-.A......G..C..U..U..UC..A.G..-...--.-.-.-.--.-..-...--..--.-.-..-.-.-.-.-.-gauaaaacaacaa.............................aaaauuauauuuu..-.-..-..-.A..A..A..G...C.A..A.U.....G.....C......A.....G...U...G...U.U...G...A...A.U.U..U.C....G...A.....G.C..A..G.-..G.U.GA....AA..U.C..G...............................................U...UA...C.U.GU.U..G..U.A.G.GUA..AAAC.UGGCUCAGGUAAA...ACG.........ACUUUGAU...G...AA.U.UU.....A.CU
   NC_006138.1       AG.G..C.C...U...C.C......G..G..G..A..UC..A.A..U...AA.A.U.C.CU.U..U...G-..--.-.-..-.-.-.-.-.-gccccau........................................acaggcac..-.-..-..-.U..C..G..A...A.G..G.G.....G.....U......U.....A...A...C...U.U...C...U...C.U.A..U.C....U...A.....U.A..G..G.G..G.A.GA....AG..U.U..G...............................................U...AG...C.C.CU.C..A..U.C.G.GUG..AUAA.UGGGGCAGGAAAA...UCC.........ACCAUUAU...C...AA.A.AU.....U.CU
   NC_007712.1       AG.C..U.U...A...A.A......A..G..C..G..UC..A.G..C...GU.G.G.A.AU.U..U...CC..CG.G.C..G.U.A.A.A.A.........................................................G.C..C..C.U..C..A..A...-.-..-.-.....G.....U......G.....G...A...C...U.U...U...A...C.C.C..U.G....C...A.....U.A..G..U.G..A.C.GA....GG..U.G..G...............................................U...UG...C.G.CU.G..U..U.G.A.GUG..AAAA.UGGCGCCGGCAAG...UCA.........ACGCUGAU...U...AA.A.GC.....G.CU
   NC_007908.1       AA.C..U.G...C...A.G......C..A..U..G..UC..U.C..C...AA.A.G.G.CU.U..C...AA..CG.G.C..G.U.G.A.A.G.........................................................G.C..C..A.U..C..G..A...A.G..A.C.....C.....-......U.....G...A...G...C.C...U...G...-.-.-..-.-....-...-.....-.-..-..-.-..-.-.--....--..-.-..-aauauugcgcgcggcgaguuc..accgugauucugggcagcucg...-...--...-.-.--.-..-..-.-.-.---..----.-GGCUCGGGUAAA...UCC.........ACCUUGAU...C...AA.G.AU.....G.AU
   NC_008095.1       --.-..-.-...-...-.-......-..-..-..-..--..-.-..-...--.-.-.U.CC.C..U...CC..--.-.-..-.-.-.-.-.-agaacauccacaaggccuu................cggcacgugcgucucgcugg..-.-..-..-.-..-..-..C...G.G..A.C.....G.....C......G.....U...C...G...C.U...G...G...A.C.G..U.G....C...G.....-.C..C..G.U.gG.C.GA....GC..U.G..C...............................................U...CG...C.U.GU.G..G..U.G.G.GCG..AGAA.UGGCGCGGGCAAG...UCC........aGCC-UGAU...G...AA.C.GU.....C.CU
   NC_008686.1       AA.G..U.C...G...A.C......A..A..C..A..UC..A.C..C...AA.G.G.A.AU.U..C...CC..GG.G.C..G.U.G.A.A.G.........................................................G.C..C..C.U..G..G..A...-.-..-.C.....G.....G......G.....G...UgcaG...C.U...G...A...A.G.A..U.C....C...G.....C.C..C..C.G..G.C.AC....CG..U.C..C...............................................A...UG...C.G.CU.G..A..U.G.G.GCG..AGAA.CGGCGCCGGGAAA...UCC.........ACGCUGAU...G...AA.G.AU.....C.AU
   NC_008709.1       AA.C..U.A...A...A.A......G..A..C..A..UU..C.A..U...AA.A.U.C.AU.U..C...CC..AG.G.C..G.U.A.A.A.A.........................................................G.C..C..C.-..U..U..G...A.U..A.A.....U.....G......C.....G...U...G...U.U..uA...A...A.U.G..U.U....U...A.....U.C..C..C.G..G.U.AA....AG..U.C..A...............................................U...GG...C.G.UU.A..U..U.A.G.GGG..AAAA.UGGUGCGGGUAAA...UCA.........ACUUUAAU...G...AA.A.GU.....A.UU
   NC_008781.1       AG.C..U.U...U...U.C......G..G..C..A..UC..A.G..C...AA.A.A.G.CU.A..C...CC..CG.G.C..G.U.G.G.U.C.........................................................G.C..C..A.A..C..A..G...C.G..A.C.....A.....U......U.....G...C...G...C.U...C...G...C.C.G..U.G....C...U.....-.-..-..-.-..-.-.--....--..-.-..-gcccggccag.......................auucacgccgu...-...--...-.G.CU.G..-..-.-.G.GUG..AAAA.CGGCGCCGGCAAA...UCG.........ACCCUGAU...G...AA.A.AUc...aU.CU
   NC_008786.1       AG.G..U.C...A...A.G......G..G..C..C..UG..C.A..A...GU.G.G.C.CU.A..C...GG..CG.G.C..A.U.A.C.A.G.........................................................G.C..C..G.U..C..A..A...A.G..G.C.....G.....U......G.....G...A...C...U.U...U...G...A.A.G..U.G....C...G.....C.G..C..A.G..G.C.GA....AC..U.G..G...............................................U...CU...C.G.CU.G..A..U.C.G.GCU..CCAA.CGGCGCCGGCAAG...ACC.........AGCACCAU...G...AA.A.GC.....C.AU
   NC_009379.1       AU.G..U.U...C...G.U......G..A..U..U..UA..A.A..A...GU.U.G.C.CU.A..C...GG..UG.G.C..A.U.U.A.A.U.........................................................G.C..C..G.U..C..A..A...A.G..G.C.....A.....U......U.....G...A...U...C.U...G...C...A.C.G..U.C....A...A.....U.C..G..A.G..G.U.GA....AU..U.G..G...............................................U...UG...C.U.UU.G..A..U.C.G.GCG..CUAA.UGGUGCAGGUAAGagcUCA.........ACCCU---...A...AA.A.GC.....C.AU
   NC_009718.1       AA.A..U.G...A...A.A......A..A..G..A..UA..A.C..A...AA.A.A.C.UU.U..U...CC..GG.G.U..G.U.G.A.A.A.........................................................G.C..C..C.U..U..G..A...U.A..A.U.....G.....U......U.....G...A...U...U.U...C...A...A.A.G..U.G....A...A.....A.C..G..U.G..G.AgAG....AU..U.C..A...............................................U...UG...C.-.CU.U..G..U.U.G.GUG..AAAA.UGGUUCGGGAAAA...UCA.........ACACUUAU...G...AA.A.AU.....U.CU
   NC_009792.1       AA.C..U.C...A...A.A......G..G..G..A..UC..G.A..U...AA.A.G.C.GU.U..C...CC..GG.G.C..G.U.G.A.A.A.........................................................G.C..G..C.U..A..U..C...U.G..G.C.....G.....C......C.....G...C...G...U.U...A...A...A.U.G..U.C....U...A.....U.C..C..A.G..G.C.CG....CG..U.A..A...............................................U...GG...C.G.CU.G..G..U.G.G.GCG..AAAA.UGGCGCGGGCAAA...UCC.........ACCAUGAU...G...AA.A.GU.....C.CU
   NC_009901.1       AG.U..U.A...C...A.A......G..C..C..A..UU..G.A..A...AA.GuC.U.UU.C..C...CU..GG.G.G..U.U.A.A.A.G.........................................................C.C..C..U.A..G..A..U...A.A..A.G.....C.....C......U.....G...C...-...U.U...A...A...A.U.G..U.U....U...A.....C.C..C..G.G..G.C.CA....AG..U.G..A...............................................U...GG...C.G.CU.G..A..U.G.G.GGG..AGAA.CGGUGCUGGUAAG...UCG.........ACCCUGAU...G...AA.A.GU.....G.CU
   NC_009937.1       AA.C..U.G...C...G.C......G..G..C..A..UC..U.C..G...AA.G.G.U.GU.U..U...CC..CG.G.C..G.U.G.A.A.A.........................................................G.C..G..-.-..-..C..U...G.G..A.U.....G.....A......C.....G...U...G...U.C...C...U...U.C.G..C.C....G...-.....-.-..-..-.-..-.-.--....--..-.-..-ucuggcccggcgaa................gugcacaugcugcu...-...--...-.-.--.-..-..-.C.G.GCG..AGAA.CGGCGCUGGCAAA...UCC.........UCGCUGAU...G...AA.G.GU.....G.CU
   NC_010001.1       AG.A..U.G...A...C.A......G..A..U..A..UA..U.G..C...AA.A.G.A.AU.U..U...CC..UG.G.C..G.U.A.A.A.G.........................................................G.C..-..-.A..C..U..G...G.-..A.C.....C.....A......A.....G...U...A...U.C...U...C...U.C.-..A.C....-...-.....-.-..-..-.-..-.-.--....--..-.-..-cguuaaaaguggaac.............cguacacgcacucaug...-...--...-.-.--.-..-..-.-.G.GGG..AAAA.CGGUGCUGGUAAA...UCU.........ACUCUGAU...G...AA.A.-U.....G.CU
   NC_010168.1       AG.A..U.G...C...G.U......U..C..G..A..UC..A.C..A...AA.A.G.A.GU.U..U...CC..GG.G.A..G.U.G.A.A.A.........................................................G.C..G..C.U..C..U..C...G.G..A.U.....G.....U......U.....U...C...G...C.U...A...A...C.C.G..U.A....C...G....gG.C..U..G.G..C.G.AA....AU..C.C..A...............................................U...GC...G.A.UU.U..G..C.G.-.GCG..AAAA.CGGCGCGGGCAAG...UCC.........ACUUUGAU...G...AA.G.GU.....C.CU
   NC_010334.1       AG.U..U.A...C...A.A......G..C..G..A..UU..G.A..A...AAgU.C.U.UU.C..C...CC..GG.G.G..U.U.A.A.A.G.........................................................C.C..C..U.A..G..A..U...A.A..A.G.....C.....U......A.....G...C...-...U.U...A...A...A.U.G..U.U....U...A.....U.C..C..A.G..G.C.AA....GG..U.G..A...............................................U...GG...C.U.UU.G..A..U.G.G.GAG..AAAA.CGGCGCUGGAAAA...UCG.........ACAUUAAU...G...AA.A.GU.....A.CU
   NC_010508.1       AG.A..U.G...C...G.C......G..G..G..A..UC..A.G..C...AA.G.A.C.GU.U..C...CC..GG.C.C..G.U.A.C.G.-c....................................................gc..G.C..U..C.G..A..C..A...A.C..G.U.....-.....C......A.....G...C...-...C.U...G...A...C.C.G..U.C....U...A.....U.C..C..G.G..G.C.GA....AA..U.C..C...............................................A...UU...C.G.CU.G..A..U.G.G.GCG..AGAA.CGGCGCGGGCAAA...UCG.........ACGCUGAU...G...AA.G.AU.....C.CU
   NC_010519.1       AA.A..U.U...A...C.C......G..G..U..G..UA..G.A..U...AA.A.U.C.UU.U..U...CC..GG.G.U..G.U.U.A.A.A.........................................................G.C..A..C.U..U..A..G...U.A..A.U.....G.....C......U.....U...G...U...U.U...A...U...C.U.G..U.U....U...A.....U.G..C..G.G..G.A.CG....AG..C.A..A...............................................U...GG...C.A.CU.U..A..U.G.G.GAG..AAAA.UGGUGCAGGUAAA...UCA.........ACGUUAAU...G...AA.G.GU.....U.UU
   NC_010554.1       AA.U..U.A...A...A.A......A..A..U..A..UU..G.A..U...AA.A.U.C.AU.U..U...CC..AG.G.C..G.U.A.A.A.A.........................................................G.C..A..U.U..A..U..C...U.G..G.U.....G.....C......G.....A...C...G...U.U...A...C...G.A.A..U.U....U...A.....U.C..C..U.G..G.C.CG....AG..U.G..A...............................................U...GG...C.A.CU.U..G..U.U.G.GUG..AAAA.UGGCGCAGGUAAA...UCC.........ACACUAAU...G...AA.A.GU.....G.CU
   NC_010571.1       AG.C..U.C...A...C.C......G..G..U..A..UU..U.G..C...AA.A.G.C.CU.U..C...-G..GC.G.C..C.-.-.-.-.-acc.................................................cag..G.C..A..C.U..C..G..C...C.G..G.C.....G.....U......G.....G...A...U...U.U...U...U...C.C.G..C.C....G...C.....G.G..C..C.G..G.C.GA....GG..U.G..C...............................................A...CG...C.G.CU.C..G..U.C.G.GCG..AAAA.CGGCGCCGGCAAG...AGC.........ACGCUGAU...G...AA.C.GU.....G.CU
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   NZ_LS483423.1     --.-..-.-...-...-.C......G..A..C..A..UC..U.C..A...AA.G.C.A.CU.U..Ca.aCG..CG.G.U..G.C.A.A.G.C.........................................................A.C..U..G.U..C..C..C...A.U..-.-.....G.....U......C.....G...A...C...C.U...C...G...A.U.A..U.C....C...A.....C.G..C..G.G..G.U.GA....AG..U.G..G...............................................U...UG...C.A.CU.C..G..U.G.G.GUG..AUAA.CGGGUCAGGCAAA...UCC.........ACGUUGGU...G...AA.A.AU.....C.CU
   NZ_LS483429.1     AA.A..U.U...A...G.U......G..G..U..G..UU..G.A..U...AA.G.U.C.AU.U..U...CC..AG.G.U..G.U.G.A.A.A.........................................................G.C..C..U.UgaA..U..A...A.U..G.-.....C.....C......U.....G...U...U...U.C...U...-...C.U.G..U.U....U...A.....C.G..C..U.G..G.A.CG....CG..U.A..A...............................................U...GG...C.A.UU.G..A..U.G.G.GAG..AAAA.UGGGGCGGGUAAA...UCG.........ACUUUGAU...G...AA.G.GU.....G.CU
   NZ_LS483443.1     GA.C..U.A...A...U.G......U..C..A..G..C-..-.-..-...-A.A.G.U.CCuU..U...CC..GG.G.C..G.U.A.A.A.A.........................................................G.C..C..U.U..A..G..A...U.C..A.C.....G.....C......A.....A...A...C...U.U...A...A...G.C.G..U.C....C...G.....U.U..C..G.-..-.-.--....--..-.-..-cauucugu............................acacgcau...-...--...-.-.-U.G..A..U.G.G.GGG..AAAA.CGGUGCGGGUAAA...UCC.........ACGUU-GU...U...AA.A.AU.....G.CU
   NZ_LS483470.1     AG.C..U.A...A...G.C......G..G..C..A..UU..G.A..A...AAgU.C.G.UU.U..C...CC..GG.C.G..U.U.A.A.G.G.........................................................C.G..C..U.A..U..C..G...G.G..C.G.....C.....C......U.....G...C...-...C.U...G...A...A.C.G..U.C....U...A.....U.C..C..C.G..G.C.AA....GG..U.G..A...............................................U...GG...C.U.CU.G..C..U.G.G.GGG..AAAA.CGGUGCGGGCAAG...UCG.........ACGCUGAU...G...AA.G.GU.....G.UU
   NZ_LS483476.1     AA.A..U.G...A...A.A......A..A..C..A..UC..A.C..G...AA.A.G.A.AU.U..C...CC..AG.G.U..G.U.A.A.A.A.........................................................G.C.aC..U.U..G..A..U...G.A..U.G.....U.....U......A.....G...C...U...U.A...C...A...A.-.G..-.U....U...A.....U.-..-..-.-..-.-.--....--..-.-..-ccagggagagau...................ucaugcacuuugc...-...--...-.-.--.-..-..-.-.G.GUG..AAAA.UGGUGCAGGUAAA...UCU.........ACCUUAAU...G...AA.A.GU.....G.UU
   NZ_LT615367.1     AA.U..U.G...C...A.A......G..G..C..A..UC..A.C..C...AA.A.A.C.CU.U..U...CC..CG.G.C..G.U.A.A.A.A.........................................................G.C..G..U.U..A..U..C...C.G..G.U.....G.....C......A.....G...C...C...C.U...G...A...A.C.G..U.U....U...A.....U.C..C..G.G..G.U.AA....GG..U.G..A...............................................U...GG...C.G.UU.A..G..U.G.G.GGG..AAAA.CGGUGCCGGUAAA...UCC.........ACCAUGAU...G...AA.A.GU.....G.CU
   NZ_LT635772.1     AA.U..U.G...G...A.A......A..A..U..G..UA..A.G..U...AA.A.A.C.CU.U..U...CC..AG.G.U..G.U.C.A.A.G.........................................................G.C..A..C.U..G..A..A...A.A..A.U.....G.....U......A.....A...A...G...U.U...U...G...A.U.A..U.U....U...A.....U.C..C..A.G..G.A.GA....AG..U.C..C...............................................A...UU...C.U.UU.A..G..U.U.G.GUG..AAAA.UGGCGCAGGCAAG...UCA.........ACUUUGAU...A...AA.A.GU.....U.AU
   NZ_LT855380.1     AA.A..U.G...A...A.C......G..G..C..A..UC..G.U..C...AA.A.A.C.UU.U..C...GA..CG.G.C..G.U.C.A.A.A.........................................................G.C..C..C.U..G..A..A...C.G..G.C.....A.....U......C.....G..aC...A...U.C...A...A...G.G.U..C.C....G...C.....G.C..C..G.G..-.-.--....--..-.-..-ugagug................................cguggg...-...--...-.U.CU.G..U..G.C.G.GCG..AAAA.CGGUGCCGGUAAA...UCC.........ACGCUGAU...G...AA.A.GU.....C.CU
   NZ_LT906448.1     AA.A..U.C...A...G.U......G..G..C..A..UU..G.A..U...AA.A.U.C.CU.U..C...CC..UG.G.U..G.U.A.A.A.A.........................................................G.C..-..-.G..C..U..U...A.G..U.A.....A.....U......-.....G...C...-...C.U...G...U...U.U.A..U.C....C...G.....U.G..U..A.C..G.C.AGggcgUG..C.A..A...............................................U...GG...C.A.UU.A..A..U.G.G.GUG..AAAA.UGGUGCGGGUAAA...UCA.........ACGCUGAU...G...AA.A.GU.....U.CU
   NZ_LT906479.1     AA.C..U.G...A...A.A......G..G..G..A..UU..G.A..U...AA.A.G.C.CU.U..U...CC..CG.G.C..G.U.G.A.A.G.........................................................G.C..G..C.U..U..U..C...C.G..G.C.....G.....C......C.....G...C...C...C.U...U...A...G.C.G..U.G....U...A.....U.C..C..C.G..G.C.AA....GG..U.G..A...............................................U...GG...C.G.CU.G..G..U.G.G.GAG..AAAA.CGGCGCCGGGAAA...UCC.........ACCAUGAU...G...AA.A.GU.....G.CU
   NZ_LT907975.1     GG.C..U.U...G...A.C......G..G..C..A..UU..G.A..A...AA.G.U.C.CU.U..U...CC..GG.G.C..G.U.C.A.A.G.........................................................G.C..G..C.U..-..-..U...-.-..G.-.....A.....U......C.....G...C...G...U.C...A...A...U.C.U..U.C....G...G....gU.C..G..A.G..G.C.UGggcgCG..U.C..A...............................................U...GG...C.A.CU.U..G..U.C.G.GGG..AGAA.UGGCGCGGGGAAA...UCG.........ACCCUCAU...G...AA.A.GU.....G.CU
   NZ_LT990039.1     AG.A..U.G...A...A.A......A..A..U..A..UC..A.G..C...AA.A.G.A.AU.U..C...CC..AG.G.C..G.U.A.A.A.A.........................................................G.C..U..U.U..G..G..A...C.A..A.C.....G.....U......C.....U...C...G...C.U...G...-...A.C.C..C.U....G...A.....A.A..A..G.G..G.G.GA....CG..G.U..A...............................................-...CA...C.G.CC.U..UgaU.G.G.GGG..AGAA.CGGAGCCGGCAAA...UCC.........ACACUGAU...G...AA.G.UG.....U.CU
   NZ_OU015584.1     AA.C..U.U...G...A.G......G..A..U..G..UU..G.G..A...AA.A.A.C.UU.A..C...GG..AG.A.A..A.A.AgA.A.A.........................................................U.U..C..U.U..U..C..A...G.A.cG.U.....U.....C......G.....G...U...U...U.A...-...-...A.C.A..U.U....G...G.....C.A..A..A.G..G.C.GA....AA..A.A..A...............................................U...CG...C.U.UU.G..A..U.U.G.GUA..AAAA.CGGAAUGGGUAAA...UCU.........ACCUUUAU...C...AA.A.AU.....G.CU
   NZ_OU594967.1     AG.C..C.Uu.aA...A.G......G..A..U..A..UU..G.A..G...AA.A.U.C.AU.U..C...CC..AG.G.C..G.U.G.A.A.A.........................................................G.C.gC..U.C..G..A..U...A.A..G.G.....C.....A......A.....G...C...C...U.C...A...-...C.U.G..U.U....U...A.....U.C..C..C.G..G.U.AA....AG..U.G..A...............................................U...GG...C.U.UU.A..A..U.U.G.GAG..AAAA.UGGUGCCGGUAAA...UCG.........ACCCUGAU...G...AA.A.GU.....U.CU


   Structure         ((.(...........................(..(..((................(.(.((............((.(.(......................................................................).)..)..)..............).)..).)........................(...(...(...(.(.............(.(..(.(....(...(.......(..(..(.(..(.(.((.............................................................)...))...)...)).)..)..).).).)))........))))).(((..................)))..)))...)...............).))


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rbsD-rbsA-rbsC-rbsB-rbsZ-rbsK-rbsR



Position: 485-584, Conformation: #1







97% 90% 75% 50% Nucleotide present N N N Nucleotide identify E < 0.1 Base-pair covariation E < 0.05 Helix-level covariation 97% 90% 75%

R R U R R R A U Y A A R U U Y Y G G R Y G C R R Y R Y Y U Y R G G R R Y G C Y U U G G G A R A A Y G G Y G C G G Y A A R U C A C Y U R A U G A A R R U Y U 5'