rbsD-rbsA-rbsC-rbsB-rbsZ-rbsK-rbsR



Position: 4482-4626, Conformation: #0







DMS reactivity > 1.0 0.0 0.4 0.7 G/U/No data
Position: 0 (position.label in template: 0.5')5' Position: 1 (position.label in template: 1.G) Reactivity: nanG Position: 2 (position.label in template: 2.C) Reactivity: nanC Position: 3 (position.label in template: 3.U) Reactivity: nanU Position: 4 (position.label in template: 4.U) Reactivity: nanU Position: 5 (position.label in template: 5.A) Reactivity: nanA Position: 6 (position.label in template: 6.A) Reactivity: nanA Position: 7 (position.label in template: 7.C) Reactivity: nanC Position: 8 (position.label in template: 8.C) Reactivity: nanC Position: 9 (position.label in template: 9.C) Reactivity: nanC Position: 10 (position.label in template: 10.G) Reactivity: nanG Position: 11 (position.label in template: 11.G) Reactivity: nanG Position: 12 (position.label in template: 12.C) Reactivity: nanC Position: 13 (position.label in template: 13.U) Reactivity: nanU Position: 14 (position.label in template: 14.C) Reactivity: nanC Position: 15 (position.label in template: 15.C) Reactivity: nanC Position: 16 (position.label in template: 16.G) Reactivity: nanG Position: 17 (position.label in template: 17.G) Reactivity: nanG Position: 18 (position.label in template: 18.C) Reactivity: nanC Position: 19 (position.label in template: 19.U) Reactivity: nanU Position: 20 (position.label in template: 20.C) Reactivity: nanC Position: 21 (position.label in template: 21.G) Reactivity: nanG Position: 22 (position.label in template: 22.C) Reactivity: nanC Position: 23 (position.label in template: 23.G) Reactivity: nanG Position: 24 (position.label in template: 24.A) Reactivity: nanA Position: 25 (position.label in template: 25.A) Reactivity: nanA Position: 26 (position.label in template: 26.C) Reactivity: nanC Position: 27 (position.label in template: 27.U) Reactivity: nanU Position: 28 (position.label in template: 28.U) Reactivity: nanU Position: 29 (position.label in template: 29.C) Reactivity: nanC Position: 30 (position.label in template: 30.C) Reactivity: nanC Position: 31 (position.label in template: 31.U) Reactivity: nanU Position: 32 (position.label in template: 32.G) Reactivity: nanG Position: 33 (position.label in template: 33.A) Reactivity: nanA Position: 34 (position.label in template: 34.C) Reactivity: nanC Position: 35 (position.label in template: 35.G) Reactivity: nanG Position: 36 (position.label in template: 36.A) Reactivity: 0.5A Position: 37 (position.label in template: 37.A) Reactivity: 0.5A Position: 38 (position.label in template: 38.C) Reactivity: 1C Position: 39 (position.label in template: 39.U) Reactivity: nanU Position: 40 (position.label in template: 40.G) Reactivity: nanG Position: 41 (position.label in template: 41.C) Reactivity: 0C Position: 42 (position.label in template: 42.U) Reactivity: nanU Position: 43 (position.label in template: 43.G) Reactivity: nanG Position: 44 (position.label in template: 44.G) Reactivity: nanG Position: 45 (position.label in template: 45.C) Reactivity: 0.5C Position: 46 (position.label in template: 46.G) Reactivity: nanG Position: 47 (position.label in template: 47.C) Reactivity: 0C Position: 48 (position.label in template: 48.U) Reactivity: nanU Position: 49 (position.label in template: 49.G) Reactivity: nanG Position: 50 (position.label in template: 50.G) Reactivity: nanG Position: 51 (position.label in template: 51.U) Reactivity: nanU Position: 52 (position.label in template: 52.G) Reactivity: nanG Position: 53 (position.label in template: 53.G) Reactivity: nanG Position: 54 (position.label in template: 54.A) Reactivity: 1A Position: 55 (position.label in template: 55.C) Reactivity: 1C Position: 56 (position.label in template: 56.A) Reactivity: 0.5A Position: 57 (position.label in template: 57.U) Reactivity: nanU Position: 58 (position.label in template: 58.U) Reactivity: nanU Position: 59 (position.label in template: 59.A) Reactivity: 0.5A Position: 60 (position.label in template: 60.U) Reactivity: nanU Position: 61 (position.label in template: 61.U) Reactivity: nanU Position: 62 (position.label in template: 62.A) Reactivity: 1A Position: 63 (position.label in template: 63.C) Reactivity: 0C Position: 64 (position.label in template: 64.G) Reactivity: nanG Position: 65 (position.label in template: 65.C) Reactivity: 0.5C Position: 66 (position.label in template: 66.C) Reactivity: 0C Position: 67 (position.label in template: 67.A) Reactivity: 0A Position: 68 (position.label in template: 68.A) Reactivity: 0.5A Position: 69 (position.label in template: 69.A) Reactivity: 0.5A Position: 70 (position.label in template: 70.C) Reactivity: 0C Position: 71 (position.label in template: 71.G) Reactivity: nanG Position: 72 (position.label in template: 72.A) Reactivity: 0A Position: 73 (position.label in template: 73.A) Reactivity: 0A Position: 74 (position.label in template: 74.A) Reactivity: 0A Position: 75 (position.label in template: 75.C) Reactivity: 0C Position: 76 (position.label in template: 76.G) Reactivity: nanG Position: 77 (position.label in template: 77.G) Reactivity: nanG Position: 78 (position.label in template: 78.A) Reactivity: 0A Position: 79 (position.label in template: 79.A) Reactivity: 0A Position: 80 (position.label in template: 80.G) Reactivity: nanG Position: 81 (position.label in template: 81.C) Reactivity: 0C Position: 82 (position.label in template: 82.A) Reactivity: 0A Position: 83 (position.label in template: 83.G) Reactivity: nanG Position: 84 (position.label in template: 84.A) Reactivity: 1A Position: 85 (position.label in template: 85.A) Reactivity: 1A Position: 86 (position.label in template: 86.A) Reactivity: 0.5A Position: 87 (position.label in template: 87.A) Reactivity: 0A Position: 88 (position.label in template: 88.G) Reactivity: nanG Position: 89 (position.label in template: 89.C) Reactivity: 0C Position: 90 (position.label in template: 90.U) Reactivity: nanU Position: 91 (position.label in template: 91.C) Reactivity: 0C Position: 92 (position.label in template: 92.A) Reactivity: 0A Position: 93 (position.label in template: 93.C) Reactivity: 0C Position: 94 (position.label in template: 94.C) Reactivity: 0C Position: 95 (position.label in template: 95.G) Reactivity: nanG Position: 96 (position.label in template: 96.G) Reactivity: nanG Position: 97 (position.label in template: 97.U) Reactivity: nanU Position: 98 (position.label in template: 98.A) Reactivity: 1A Position: 99 (position.label in template: 99.U) Reactivity: nanU Position: 100 (position.label in template: 100.U) Reactivity: nanU Position: 101 (position.label in template: 101.C) Reactivity: 0C Position: 102 (position.label in template: 102.G) Reactivity: nanG Position: 103 (position.label in template: 103.U) Reactivity: nanU Position: 104 (position.label in template: 104.G) Reactivity: nanG Position: 105 (position.label in template: 105.U) Reactivity: nanU Position: 106 (position.label in template: 106.U) Reactivity: nanU Position: 107 (position.label in template: 107.G) Reactivity: nanG Position: 108 (position.label in template: 108.A) Reactivity: 1A Position: 109 (position.label in template: 109.A) Reactivity: 0A Position: 110 (position.label in template: 110.A) Reactivity: 0A Position: 111 (position.label in template: 111.A) Reactivity: 1A Position: 112 (position.label in template: 112.U) Reactivity: nanU Position: 113 (position.label in template: 113.G) Reactivity: nanG Position: 114 (position.label in template: 114.A) Reactivity: 0A Position: 115 (position.label in template: 115.U) Reactivity: nanU Position: 116 (position.label in template: 116.G) Reactivity: nanG Position: 117 (position.label in template: 117.A) Reactivity: 1A Position: 118 (position.label in template: 118.A) Reactivity: 1A Position: 119 (position.label in template: 119.G) Reactivity: nanG Position: 120 (position.label in template: 120.A) Reactivity: 0.5A Position: 121 (position.label in template: 121.U) Reactivity: nanU Position: 122 (position.label in template: 122.G) Reactivity: nanG Position: 123 (position.label in template: 123.C) Reactivity: 0C Position: 124 (position.label in template: 124.A) Reactivity: 0A Position: 125 (position.label in template: 125.G) Reactivity: nanG Position: 126 (position.label in template: 126.C) Reactivity: 0C Position: 127 (position.label in template: 127.G) Reactivity: nanG Position: 128 (position.label in template: 128.A) Reactivity: 0A Position: 129 (position.label in template: 129.A) Reactivity: 1A Position: 130 (position.label in template: 130.G) Reactivity: nanG Position: 131 (position.label in template: 131.G) Reactivity: nanG Position: 132 (position.label in template: 132.C) Reactivity: 0C Position: 133 (position.label in template: 133.G) Reactivity: nanG Position: 134 (position.label in template: 134.G) Reactivity: nanG Position: 135 (position.label in template: 135.C) Reactivity: 0C Position: 136 (position.label in template: 136.G) Reactivity: nanG Position: 137 (position.label in template: 137.C) Reactivity: 0.5C Position: 138 (position.label in template: 138.A) Reactivity: 0.5A Position: 139 (position.label in template: 139.G) Reactivity: nanG Position: 140 (position.label in template: 140.G) Reactivity: nanG Position: 141 (position.label in template: 141.U) Reactivity: nanU Position: 142 (position.label in template: 142.A) Reactivity: 0.5A Position: 143 (position.label in template: 143.C) Reactivity: 0.5C Position: 144 (position.label in template: 144.U) Reactivity: nanU Position: 145 (position.label in template: 145.G) Reactivity: nanG Position: 146 (position.label in template: 146.C) Reactivity: 0.5C Position: 147 (position.label in template: 147.A) Reactivity: 1A Position: 148 (position.label in template: 148.U) Reactivity: nanU Position: 149 (position.label in template: 149.G) Reactivity: nanG Position: 150 (position.label in template: 150.A) Reactivity: 0A Position: 151 (position.label in template: 151.A) Reactivity: nanA Position: 152 (position.label in template: 152.A) Reactivity: nanA Position: 153 (position.label in template: 153.A) Reactivity: nanA Position: 154 (position.label in template: 154.A) Reactivity: nanA Position: 155 (position.label in template: 155.G) Reactivity: nanG Position: 156 (position.label in template: 156.G) Reactivity: nanG Position: 157 (position.label in template: 157.U) Reactivity: nanU Position: 158 (position.label in template: 158.A) Reactivity: nanA Position: 159 (position.label in template: 159.U) Reactivity: nanU Position: 160 (position.label in template: 160.C) Reactivity: nanC Position: 161 (position.label in template: 161.C) Reactivity: nanC Position: 162 (position.label in template: 162.G) Reactivity: nanG Position: 163 (position.label in template: 163.U) Reactivity: nanU Position: 164 (position.label in template: 164.A) Reactivity: nanA Position: 165 (position.label in template: 165.C) Reactivity: nanC Position: 166 (position.label in template: 166.U) Reactivity: nanU Position: 167 (position.label in template: 167.G) Reactivity: nanG Position: 168 (position.label in template: 168.U) Reactivity: nanU Position: 169 (position.label in template: 169.A) Reactivity: nanA Position: 170 (position.label in template: 170.C) Reactivity: nanC Position: 171 (position.label in template: 171.U) Reactivity: nanU Position: 172 (position.label in template: 172.G) Reactivity: nanG Position: 173 (position.label in template: 173.A) Reactivity: nanA Position: 174 (position.label in template: 174.U) Reactivity: nanU Position: 175 (position.label in template: 175.U) Reactivity: nanU Position: 176 (position.label in template: 176.A) Reactivity: nanA Position: 177 (position.label in template: 177.C) Reactivity: nanC Position: 178 (position.label in template: 178.U) Reactivity: nanU Position: 179 (position.label in template: 179.U) Reactivity: nanU Position: 180 (position.label in template: 180.U) Reactivity: nanU Position: 181 (position.label in template: 181.A) Reactivity: nanA Position: 182 (position.label in template: 182.G) Reactivity: nanG Position: 183 (position.label in template: 183.G) Reactivity: nanG Position: 184 (position.label in template: 184.A) Reactivity: nanA Position: 185 (position.label in template: 185.A) Reactivity: nanA Position: 186 (position.label in template: 186.3')3' 10 20 30 50 100 150


rbsD-rbsA-rbsC-rbsB-rbsZ-rbsK-rbsR



Position: 4482-4626, Conformation: #0







Retained alignments:


   NC_002939.5       CG.CGG...AGCGGU...AA...G...CG....U......G......C......UC.A.A...................................................................G.GA..G..CG..GCU.C.U.UUC.C...CCUC...G...C.C.UAC..CU.CGUUACCCCCAAUAUACCCGAG.GCCGAGCG....................GCU...CA.C..CG..GUG....CA.AA.....C...A.........UC....UC...C...GAC......GA.AGAA...UCG.AU...GCG.GG...AG.........................................GC.G.GCC..CGCCGC..C.UGC...ACC...GG.CUG....G...GG.GCA....CGCA..AC...G..........................UUC..UUCUCA...A.GGG
   NC_003869.1       CC.UGC...ACCAGC...AU...A...CG....A......A......U......UG.C.C...................................................................U.GA..U..AC..AGU.U.U.UAG.A...GAAA...G...U.U.UAU..AU.UUUGACUCCAAAUGAAACAGAG.UUAGCUUU....................UUU...AU.C..CA..AAA....GC.AA.....A...A.........UA....GA...A...ACA......AU.UGAA...GAU.AU...AAG.AA...AG.........................................GC.U.UCG..AAAUAU..U.UGC...UAG...AC.AAA....G...GA.GUU....CAAA..AU...G..........................UUA..UAACAA...C.UAU
   NC_003901.1       AA.AGA...A---GC...CC...U...UU....C......Ag...ucC......UU.A.U...................................................................U.AA..A..GA..ACU.G.U.UAC.C...UCUC...U...G.C.AAG..GU.UACAACUCCAAACGCCUCAGAG.GCGGGCGC....................ACU...UG.C..AG..GUG....UC.AC.....U...G.........UC....AA...G...ACC......CA.UGAA...GAU.GC...AAA.AC...UU.........................................GC.G.GCA..AGAAAA.aU.UGC...A-G...AC.CUU....G...GG.GUU....GAAU..CC...G..........................UUA..UUGUUA...C.GGG
   NC_004347.2       CC.AGC...GCCAGC...--...-...--....-......-......-......--.-.-ggccacuc..................aggagcugg................................-.--..-..--..AUU.AcC.UGA.A...AUGG...G...U.C.GAC..AU.UAUUACCCCCAAUGAAACCGAG.GCCGAAGC....................AUU...AA.C..GG..GUA....UU.GA.....G...G.........UC....AA...G...CAU......GA.AGAA...GAU.GC...CAA.AC...UC.........................................GC.G.GCC..CAAUGG..C.UAC...AUC...AA.CAG....G...GG.AUU....ACCA..CU...G..........................UGG..UGAUUA...C.CUU
   NC_004557.1       CC.GGC...ACCGGC...AG...C...CA....A......A......U......UA.A.A...................................................................G.GA..A..CA..UUU.U.G.UAG.A...ACUA...G...U.U.GAU..UA.UAUAGUUCCUAAUGAAUCAGAG.GCUUCACU....................AUU...AA.C..UG..GCA....UU.AA.....A...G.........UA....AA...U...AGU......AU.UGAA...AGU.GC...UAG.AA...AA.........................................GC.A.GCU..AAAAGU..C.UCC...UUA...AU.UUA....G...GA.UGU....AAAA..AU...G..........................UUA..UAAUUA...C.ACU
   NC_004578.1       CC.GGC...CCCGGC...CA...G...CG....A......G......Cc...auUG.C.C...................................................................C.GC..A..AG..CUG.G.U.ACG.G...CCUG...A...U.C.GAU..UA.CCUGAUCCCCAACGAAAGCGAA.GCGCAGAC....................CCU...GA.C..GG..GUG....UG.AA.....U...G.........UC....GA...U...UCA......GC.CGCC...UCU.GC...CGA.AC...AG.........................................GC.U.GCC..AUGGCA..A.UGC...UGG...CG.GCC....G...GA.GCG....CGCA..AC...G..........................UGA..UCAUCA...C.CCU
   NC_004605.1       CC.AGC...UCCAGC...UC...G...CG....A......A......U......UG.U.C...................................................................A.GA..U..GA..ACU.G.C.UUG.C...UUGU...A...U.U.GAC..GU.GAUCACGCCAAAUGAAACGGAA.GCUGAAGU....................GCU...GA.C..AG..GUG....UU.AC.....U...G.........UA....AC...A...GAC......AA.CGAA...AGC.GC...-GC.AA..gAA.........................................GC.G.GCG..AAUGUG..C.UAC...AUG...GU.AAA....G...GU.AUU....GAAA..UU...G..........................UCA..UGAUCA...C.UCU
   NC_005126.1       CC.GGC...GCCGGC...CC...G...AA....A......A......U......UA.U.C...................................................................U.GA..U..CA..AUU.G.C.UCU.C...AUUG...G...U.G.GAU..AU.CAUUACACCGAAUGAAACUGAA.GCGGAAUA....................UCU...CA.C..CG..GCA....UU.AA.....A...G.........UA....GA...A...AAU......GA.UUCA...GAU.GC...GGA.AA...AU.........................................GC.G.GCU..CAAAUA..C.UGC...AUG...GG.AAA....G...GU.AUU....GAAA..CU...G..........................UAA..UUAUCA...C.AUU
   NC_005966.1       CC.GGC...GCCAGC...CU...G...UG....A......G......U......UA.C.C...................................................................U.GA..A..GA..AUU.A.U.UAC.G...UUUG...G...U.C.GAU..AU.UAUUACCCCCAACGAAACCGAA.GCGUUAAG....................CCU...CA.C..CA..AUG....UG.AU.....U...G.........UG....CA...U...GAU......GA.UCAU...GAC.GC...UGC.CG...AA.........................................GC.G.GCA..AAUGUG..C.UGC...AUC...AA.AAA....G...GU.AUU....AAAA..CU...G..........................UAG..UCAUCA...C.GAU
   NC_006300.1       CC.CGC...ACCGGC...GC...A...GC....C......U......U......UG.U.C...................................................................C.GA..U..CA..UUU.A.C.UUG.C...CCAU...A...U.C.GAU..AU.GAUUACGCCGAAUGAAACCGAA.GCGGAAAU....................UCU...CA.C..CG..GCG....UG.CA.....A...G.........UA....AC...G...GAU......GA.ACAA...AGU.GC...GGC.GG...AA.........................................GC.A.GCG..CAGGUU..U.UUC...AUC...AC.AAA....G...GU.AUU....GAAA..CG...G..........................UGC..UGAUUA...C.GCU
   NC_007498.2       --.---...---UGC...UG...C...GC....-......-......-......--.-.-gacgaagccac............caagguuugucg................................A.GA..G..CA..UCU.G.C.UUC.C...GCAC...A...C.C.UAU..CU.GCUCACCCCCAACCUGCCGGAA.GCCGAACA....................ACU...GA.C..CG..GCC....UG.CC.....C...G.........UC....CA...C...ACC......GA.GGCC...GAU.AU...GGA.AA...AG.........................................GC.G.GCC..CGGCGC..C.UGC...AGC...AA.CUC....G...GU.GCG....CGCC..AC...G..........................UGU..UACUCA...A.GGG
   NC_007509.1       CC.CGC...ACCCGC...GC...A...GC....C......G......C......UG.U.U...................................................................C.GA..C..GC..GUU.G.C.UCG.C...ACGG...G...U.C.GAC..UA.CCUCGUCGUCAACGAAACCGAA.GCCGAAUC....................GCU...GA.C..CG..GCA....UC.GC.....C...G.........UC....GG...C...GAC......GA.CGCG...UCG.GC...CGU.GC...GU.........................................GC.C.GCC..GAUGCG..C.UGU...GCG...CG.AAG....G...GC.GUC....GGCA..AC...G..........................UGC..UGGUGA...C.GCU
   NC_007510.1       CC.GGC...CCCGGC...CG...U...CGc.acC......A......C......UG.C.C...................................................................G.GA..C..GG..CUG.G.C.UGC.C...GCUC...G...U.C.GAU..UA.CCUGAUCCCGAACGAGGUCGAG.GCGGCCGC....................GCU...GA.C..CG..CGC....UG.CC.....G...G.........UA....CG...C...GAU......CC.GGCA...GAG.GC...GGA.AG...CC.........................................GC.C.GCA..CGCGUG..C.UGC...AGG...CC.GGC....G...GC.GCA....UGCA..AU...G..........................UGC..UGGUGA...C.GCU
   NC_007519.1       --.---...UGCUGC...--...-...--....-......-......-......--.-.-...................................aggaggaugcaguggaggcgcugaaaaaacgc-.--..-..--..-AU.G.C.UGC.C...GCUG...G...C.C.UAU..CU.GCUGACGCCCAACCGGCCCGAG.GCCGAACU....................GCU...GG.C..CG..GUA....UG.GC.....G...G.........UG....GA...G...ACC......AA.AGAA...GAU.GU...GGC.AG...AG.........................................GC.A.AUC..CGCCGU..C.UGC...UGG...AU.A--....U...GG.GGC....CGCGugCC...G..........................UGC..UGCUCA...A.---
   NC_007952.1       CC.GGC...GCCGG-...--...-...--....C......G......U......UG.C.C...................................gcucgac..................gacggca-.--..-..--..--U.C.U.UCC.C...GCUG...U...G.C.GAC..UA.CAUCACCCCGAAUGAAACCGAA.GCGACCGC....................GCU...CA.C..CG..GCG....UG.CC.....G...A.........UC....GC...G...AAC......GC.CGAC...GAC.GC...CCG.CC...GU.........................................GC.C.GCC..GACGUG..C.UGC...UCG...CC.AAA....G...GC.GUC....GGCA..CG...G..........................UCA..UCGUCA...C.GCU
   NC_007953.1       CC.GGC...GCCCG-...--...-...--....C......A......C......UG.C.C...................................gcuc.......................gacga-.--..C..GG..CAU.C.U.UCC.C...GCUG...U...G.C.GAC..UA.CCUCACCCCGAACGAAACCGAG.GCCACCGC....................GCU...CA.C..CG..GCG....UG.CC.....G...A.........UC....GC...C...AAU......CC.CGAC...GAC.GC...-GC.GC..cGC.........................................GC.C.GCC..GACGCG..C.UGC...UGG...CC.AAA....G...GG.GUC....GGCA..CG...G..........................UGA..UCGUGA...C.GCU
   NC_008148.1       CC.GGC...UCCCGC...GC...G...GC....G......G......A......UC.C.C...................................................................C.GA..C..GA..GGU.G.U.GGG.G...GUAC...G...U.C.GAU..GU.GAUCACGCCCAACGA-------.--------gggagaggccgccguggugc---...--.-..--..---....-U.--.....-...-.........--...gGG...C...GAG......GA.GGGA...AAC.GA...-GG.AG...AA.........................................CC.-.UCGgcAAACUG..C.UGU...UGG...AA.AGG....G...UC.AAC....UUGG..CG...G..........................CGG..UGGUGA...C.GCU
   NC_008345.1       CC.GGC...GCCAUA...UC...A...UC....A......A......A......GA.A.C...................................................................U.CU..C..GA..GUU.A.U.UAC.C...UUUA...G...U.U.GAU..AU.GAUCACUCCUAAUGAAACAGAA.GCUUCGUU....................AAU...GA.C..UG..GGA....UC.GA.....A...G.........UA....AC...C...GAU......CU.AGAC...AGU.GC...UAA.GC...AG.........................................GC.C.GCU..AUUGCA..A.UAC...AUG...CC.UUA....G...GC.GUA....ACGU..CG...G..........................UGG..UGAUUA...C.UCG
   NC_008525.1       CC.UGC...UCCUGC...AG...U...UA....A......Aa...auU......UA.C.C...................................................................U.AA..G..GA..AUU.A.A.UUC.A...AUUG...A...C.G.GAU..GU.UAUCACGCCCAAUGAAACUGAA.GCUGAAAU....................UUU...AA.C..AG..GCG....UU.AC.....G...G.........UU....GU...G...GAC......GA.UGCU...UCA.AU...GAA.AG...AA.........................................GC.A.GCU..CAAAGA..U.UAC...AUA...AA.AUG....G...GA.GUC....CAGA..CG...G..........................UCA..UUAUUA...C.CCU
   NC_008709.1       CC.GGC...ACCUGC...GC...A...AU....C......A......U......UA.A.G...................................................................C.GA..U..GA..GUU.G.U.UAA.A...ACUU...G...U.U.GAU..AU.UAUCACCCCCAAUGAAACCGAA.GCUGAGCA....................GCU...UA.C..GG..GUG....UU.CA.....A...G.........UC....AA...G...GAU......AU.GCCC...UCG.GC...ACA.AC...AA.........................................GC.C.GCU..GAAAAG..U.UAC...AUG...AC.AAG....G...GU.AUC....GAAA..UG...G..........................UAA..UGAUAA...C.CCU
   NC_009464.1       CC.GGA...CGCGGU...C-...-...--....-......-......-......--.-.-...................................gaggucc..................uuaaggc-.--..A..GA..GAU.C.C.UGC.C...UCUG...G...C.U.GAG..GU.AGUCACCCCGAACGUGUACGAA.GCGGAAGU....................GCU...GU.C..GG..GUA....UC.AA.....G...A.........UC....AG...G...GAC......AU.GGAC...UCU.GU..cAGA.GA...GG.........................................CC.U.G-U..AAGGCA..A.UCC...GCG...CC.CUC....G...GC.GUC....AGGA..AC...G..........................UCG..UCCUGA...C.CGG
   NC_009633.1       CC.AGA...AGCAAA...GA...A...UU....C......A......C......UA.A.U...................................................................U.AA..C..CA..ACU.G.A.UUC.C...UCUG...G...U.U.ACA..GU.CAUCACACCUAAUUUGCCCGAG.GCAGAGGU....................AAU...CA.C..AG..GGC....UC.AC.....C...A.........UU....GA...A...AGC......GA.AAAA...GAU.AU...GGA.GG...AG.........................................GC.U.GCU..AAAGCAauU.UUC...A--...--.UAA....U...GG.GUC....CUCA..AUa.uG..........................UGU..UGAUCA...A.AGG
   NC_009767.1       CC.GGC...GCCGGC...GC...U...GC....C......G......C......UG.C.C...................................................................U.GA..U..GA..AUU.G.U.AUG.C...GCUG...G...C.G.GAC..AU.UCUAACGCCGAACGAAAGUGAA.GCGACAAC....................CCU...GA.C..CG..GCA....UC.CC.....C...G.........UC....CA...U...GAU......GA.GCAG...AGU.GC...GGC.GG...CG.........................................GC.G.GCG..CGGGCA..U.UGC...GUG...CG.CGC....G...GC.GCG....CGAA..CG...G..........................UCA..UUAUCA...A.ACU
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   NZ_LR134510.1     CC.AGC...UCCAGC...UU...A...UG....A......G......C......UU.C.C...................................................................U.UU..A..GA..ACU.U.U.AUC.A...AUAC...G...U.A.GAU..AU.CAUUACCCCAAAUGAAACAGAA.GCUGAAAU....................UCU...AA.C..AG..GUG....UU.CA.....A...G.........UA....AC...A...GAU......AU.GCAU...ACU.GC...UCA.AC...AA.........................................GC.A.GCA..GAUAUU..U.UAC...ACC...AA.CGU....G...GU.GUC....AAAU..GU...G..........................UGU..UGAUUA...C.ACU
   NZ_LR134515.1     CC.GGC...GCCGGC...AC...A...GC....C......U......C......UC.U.C...................................................................G.GA..C..GA..AAU.U.U.UAU.C...GAAU...A...U.C.GAU..AU.GAUUACCCCAAAUGAAACCGAA.ACCGCCUU....................ACU...GA.C..CG..GCG....UU.CA.....A...G.........UG....GU...C...GAU......GA.ACAA...ACC.GC...CCA.AC...AA.........................................GC.C.GCG..AAUGUG..U.UCC...AUC...AA.AAA....G...GG.AUU....CAAA..CC...G..........................UGU..UAAUUA...C.UUU
   NZ_LR590481.1     CC.AGC...ACCAGC..gGC...U...AA....A......A......U......UG.G.-...................................................................A.CA..A..GA..CCU.A.U.UAA.G...UUAU...A...C.U.GAC..AU.AAUUGUUCCAAAUGAAACUGAA.GCUUUUGA....................AUU...AA.C..AG..GUA....UA.GA.....A...G.........UA....AA...U...GAU......AU.AGAG...AGU.GC...UAA.AA...UG.........................................GC.G.GCA..GAAAAG..U.UCU...UUU...CU.AAG....G...GU.GUG....AAGU..UU...G..........................UAG..UUAUAA...C.CUU
   NZ_LR593886.1     CC.GGC...CCCGGC...C-...-...--....-......-......-......--.-.-...................................agcacgacgaua.......cccgccgaggcgu-.--..-..-A..CCG.G.C.UCU.C...GACG...G...U.G.UUU..UG.C------CCCAACGAACACGAG.GCGGCCGU....................UCU...CA.C..GG..GUA....AG.CC.....C...G.........UU....GA...A...UCA......CC.GGAA...GAA.GC...CGA.AG...CC.........................................GC.U.GCC..CGGGAG..C.UGA...UGG...CG.CGC....G...GC.GCG....CACA..AU...G..........................UCG..UCGUGA...C.ACU
   NZ_LR699007.1     CC.GGC...CCCGGC...GC...G...GG....A......G......U......UA.C.C...................................................................G.GA..C..AG..CCU.G.C.UGA.A...GCUG...G...U.G.GAU..GU.UAUCACCCCGAAUGAAACCGAA.GCGGAAAA....................GCU...GA.C..CG..GUA....UU.UC.....U...G.........UC....AG...U...GAU......GA.AACC...GGC.GC...AGC.CA...GA.........................................GC.G.GCG..CAGGUA..C.UGC...AUG...AU.AAA....G...GU.AUC....GGAC..AG...G..........................UAC..UGAUCA...C.CCU
   NZ_LR699554.1     CC.GGC...GCCGGC...CU...U...GC....C......G......C......UC.G.A...................................................................C.GA..C..GG..CAU.C.U.UCC.C...GCUG...U...G.C.GAC..UA.CAUCACCCCGAAUGAAACCGAA.GCGACCGC....................GCU...CA.C..CG..GCG....UA.CC.....G...A.........UC....GC...G...AAC......GC.CGAC...GAC.GC...CCG.CC...GC.........................................GC.C.GCC..GACGUG..C.UGC...UCG...CC.AAA....G...GC.GUC....GGCA..CG...G..........................UCA..UCGUCA...C.GCU
   NZ_LS483250.1     CC.GGC...GCCUGC...AC...A...GC....C......A......U......UA.A.G...................................................................U.GA..U..GA..ACU.A.U.UAG.C...UGUU...G...U.U.GAU..UU.GAUCACCCCCAACGAAACCGAA.GCAGAAUU....................AUU...AA.C..GG..GUA....UU.AA.....A...G.........UG....AC...U...GAC......AU.GGCG...UCA.GC...-GC.AA..gUA.........................................GC.C.GCU..AAUGCA..U.UAC...AUG...CU.AAA....G...GU.AUC....AGCG..AG...G..........................UGA..UGAUCA...C.GUU
   NZ_LS483306.1     CC.UGC...GCCAGC...UA...U...GG....A......A......Aa...agUG.C.C...................................................................G.GA..A..GA..AUU.G.C.UAC.G...AUUA...A...C.G.GAU..AU.UAUUAUUCCAAAUGAAACGGAA.ACCGAAAU....................CUU...AA.C..UG..GUA....UU.AA.....A...A.........UU....AC...C...GAU......GA.AGCA...AGU.AU...GCA.AA...AA.........................................GC.U.GCU..CAAAAA..C.UUC...AUG...AU.UUA....G...GC.AUU....GAAG..GG...G..........................UCA..UUAUUA...C.UGU
   NZ_LS483369.1     UC.CGC...C---GU...UG...C...GG....C......A......C......UG.A.C...................................................................G.CU..G..CU..GCU.G.C.UUC.C...CGGU...A...C.G.GAU..GU.AUUGACCCCCAACCUGCCCGAA.GCGGAAGC....................CCU...GA.C..CG..GCG....UG.CA.....U...A.........UC....GA...A...AGC......CG.UAAA...GAU.GC...GGA.AC...GU.........................................GC.G.GCA..AAAAUC..C.UGC...UUG...AU.UAC....G...GU.GUC....AAAA..AC...G..........................UCG..UUAUCA...-.--A
   NZ_LS483422.1     CC.UGC...ACCUGC...AC...A...AU....C......A......U......UA.C.C...................................................................U.GA..U..UC..AUU.A.U.UAG.C...GUUA...G...U.U.GAU..AU.UAUUACUCCAAACGAAACUGAG.GCGGAGCA....................UUU...AA.C..UG..GUA....UC.GC.....G...G.........UU....AA...U...GAC......AA.CCAA...GGC.GC...UCA.AG...CG.........................................GC.U.GCA..GAAGUG..U.UGC...AUA...AA.AAA....G...GU.AUC....GCUA..AA...G..........................UUA..UGAUUA...C.UUU
   NZ_LS483427.1     CC.GGC...UCCAGC...CC...A...--....-......-......-......--.-.-...................................gccugaccuggug......cuuuccgaaguga-.--..A..AG..ACU.G.C.UCC.U...ACUU...C...-.-.---..--.----AUGCCAAACGAAUCCGAA.CUCUCGCU....................GCU...CA.C..CG..GCA....UG.CC.....A...G.........UG....GA...C...ACG......AU.UGAU...GAC.GU...-GC.GC..aAU.........................................GC.G.GCU..UCCGCG..C.UGC...UGG...AU.GCG....G...GC.AUG....AAGA..AC...G..........................UGA..UCGUGA...C.GUU
   NZ_LS483429.1     CC.UGC...UCCAGC...GC...A...GA....U......U......U......UA.U.C...................................................................G.GA..C..GA..AUU.A.U.UGA.G...UUUG...A...U.U.GAU..AU.UAUUACACCAAAUGAAACUGAA.GCUGAAAU....................CCU...GA.C..GG..GGG....UA.GC.....G...G.........UA....AC...C...GAC......GA.GCAA...AGU.GC...GGU.GA...AA.........................................GC.U.GCG..AGUGUU..U.UUC...ACG...AU.CAA....G...GC.AUU....AAAA..CC...G..........................UAA..UGAUUA...C.CCU
   NZ_LS483470.1     CC.UGC...UCCGGC...GC...G...GU....C......G......C......UG.C.C...................................................................C.GA..U..GA..GCU.A.C.UGU.C...GUGU...A...U.C.GAC..AU.CAUUACGCCGAAUGAAACGGAA.GCGGAGUA....................CCU...GA.C..GG..GGA....UU.GC.....U...G.........UG....AC...C...GGA......GA.GGAA...GAG.GC...ACA.UC...GC.........................................GC.A.GCC..AGUGCG..C.UGC...ACG...CU.AAA....G...GC.AUU....CGCA..CG...G..........................UAA..UUAUUA...C.UCU
   NZ_LS991421.1     CC.GGC...ACCAGC...GC...A...AA....A......Ag...acU......UA.C.C...................................................................G.CU..A..AC..GCU.G.C.UGA.A...AAAU...G...U.G.GAU..CU.CAUCACACCGAAUGAAACCGAA.AGUGAAUU....................GAU...CA.C..GG..GCA....UC.CC.....G...G.........UC....AC...A...GAU......GA.AGCCa.gCAU.GC...GGG.CC...--.........................................UC.G.GCA..GCGUAU..U.AUC...AUG...AG.CUG....G...GU.AUU....CGCG..GC...G..........................UGA..UCAUUA...C.GUU
   NZ_LS999839.1     CC.UGC...UCCGGC...GA...A...UG....A......U......U......UA.A.U...................................................................U.CC..U..GA..ACU.G.U.UUA.G...UCUG...A...U.A.GAC..AU.CAUUACCCCGAAUGUAAAUGAG.GCCGAGGU....................UUU...AU.C..GG..GCG....UA.AA.....G...A.........UC....UC...U...GAU......AU.CACA...AGU.GC...AAA.AG...AG.........................................GC.G.GCA..GAAAGC..U.UAC...AUA...AA.CAA....G...GU.GUG....AAAA..AU...G..........................UGA..UCAUCA...C.CUU
   NZ_LT605586.1     CC.GGC...CCCGGU...--...-...--....-......-......-......--.-.-gggggaugcaagc.........cagauggccgauc................................-.--..-..--..-UU.A.U.CG-.C...CCUG...A...G.U.GAC..AU.CAUUUCGCCCAACGAGACGGAA.GCCGCCGA....................AAU...CA.C..CG..GCA....UU.G-.....A...G.........CC....GA...-...-CC......GA.UCUC...GUU.UC...GGC.GG...AA.............................g.........cgGC.G.GGG..CGCAAG..C.UUC...UGG...AG.CGC....G...GC.CCG....AAGA..UC...G..........................UCA..UCCUCA...A.GCU
   NZ_LT615367.1     CC.AGC...GCCCGC...CU...G...CC....C......G......U......UA.C.C...................................................................G.GA..U..GA..ACU.G.U.UGG.C...GUUG...G...U.C.GAU..AU.GAUAACCCCCAAUGAAACCGAA.GCGCAGAU....................CCU...GA.C..CG..GGG....UG.AC.....G...G.........UA....AA...A...ACA......GA.AGCA...GAU.GC...GCA.AC...AG.........................................GC.C.GCG..CAGGUA..U.UGC...AUG...AA.AAA....G...GC.AUU....CCCA..CA...G..........................UAU..UGAUUA...C.ACU
   NZ_LT630287.1     CCuGCC...CCUGGU...GA...A...GA....C......C......-a...caUU.U.C...................................................................U.GA..A..GA..AUU.A.C.UAA.A...AGUC...A...C.A.GAU..AU.GAUCACUCCAAACGAAACUGAA.GCUGAGAC....................GAU...CA.C..UG..GCA....UU.CA.....U...G.........UU....GA...A...GAC......GA.AGCC...UCU.GC...CAG.AA...AA.........................................GC.U.GCU..ACAAAG..U.UGC...AUG...AG.CUU....G...GU.GUA....GAUG..UG...G..........................CAA..UUAUUA...C.GAU
   NZ_LT855380.1     CC.GGC...GCCAGC...CA...G...UG....A......G......Cc...gcUG.C.C...................................................................C.GC..U..CA..CUG.G.U.ACA.G...CCUG...A...U.C.GAU..UA.CCUGAUUCCCAACGAAAGCGAA.GCCCAGGC....................AUU...GU.C..CG..GGA....UC.AG.....U...G.........UC....GA...C...UCG......CC.AGCC...UCU.GC...GCA.AC...AG.........................................GC.G.GCU..CUGGCG..C.UGC...UGG...CA.GCC....G...GU.GCA....CGUA..AC...G..........................UGA..UCAUCA...C.GCU
   NZ_LT906435.1     CC.GGA...UGCGGU...CG...C...AG....C......C......U......UG.C.G...................................................................C.GA..C..GA..ACU.G.C.UGC.C...GCUG...G...C.C.GAU..CU.CAUCACGCCGAAUCUGCCGGAA.GCGGCAGC....................AUU...GC.U..GG..GGG....UA.GA.....A...G.........CC....GC...G...ACG......GA.CGAA...GCC.GA...---.--...--gaugga.................gcgcca............--.G.GCA..CAGGCA..C.UGC...GGG...CG.CUC....G...GC.GCA....CGCA..AC...G..........................UGC..UGGUCA..aA.GGG
   NZ_LT906447.1     CC.UGC...UCCGGC...UG...A...AA....C......G......U......UG.C.C...................................................................A.GA..A..GA..GUU.G.U.UAG.G...AUUG...A...U.U.GAU..GU.CAUUAUUCCUAAUGAAUUUGAA.GCUGAAAA....................CUU...AU.C..UG..GCA....UU.CC.....A...G.........UG....AC...A...GAU......GA.AAAA...ACU.AU...GGC.AC...AA.........................................AA.U.GCA..GACUAU..U.UCU...UAG...GA.UUA....G...GC.AUC....AAAG..UA...G..........................UGG..UCAUUA...C.UUU
   NZ_LT906448.1     CC.AGC...ACCAGC...AC...A...AA....C......A......C......UU.C.C...................................................................A.GA..U..GA..AUU.G.U.UAA.C...ACAA...U...U.A.GAC..AU.GAUUACCCCAAAUGAAACUGAA.ACUGAAAU....................UCU...CA.C..UG..GAG....UA.AA.....A...G.........UA....GU...U...GAU......GA.ACAA...AGU.GC...AGC.AC...AA.........................................GC.U.GCU..GAUGUU..U.UCC...ACA...GC.AAA....G...GU.AUC....GAGA..CG...G..........................UAU..UGAUAA...C.GCU
   NZ_LT906460.1     CC.GGC...ACCAGC...UA...A...AG....A......U......U......UA.C.C...................................................................A.CA..A..UC..AUU.G.U.UGA.A...AUUA...A...U.C.GAC..AU.UAUCAUUCCUAAUGAAACUGAA.GCUGAAGU....................AUU...AU.C..AG..GUU....UA.GC.....U...G.........UA....AC...U...GAU......GA.GCAA...UCU.AU...GAU.UG...AU.........................................AA.U.GCC..AAUUAC..U.UUU...UAU...CU.CUU....G...GU.AUC....AAGA..CG...G..........................UCU..UGAUUA...C.ACU
   NZ_LT906479.1     CC.GGC...GCCGGC...GC...G...CG....A......A......C......UG.C.C...................................................................G.GA..U..GA..GCU.G.C.UGG.C...GACU...A...U.C.GAU..AU.GAUCACCCCCAAUGAAACCGAG.GCCCAGCG....................CCU...GA.C..CG..GGA....UU.GC.....G...G.........UC....GA...C...AAC......GA.UGCA...GAU.GC...GGC.GC...GC.........................................GC.C.GCU..CAGGUU..C.UGC...ACG...AU.AAA....G...GC.AUC....GCCA..CG...G..........................UGA..UCAUUA...C.CCU
   NZ_LT906482.1     GC.CGU...GGCCGC...G-...-...--....-......-......-......--.-.-...................................cuca.......................aacgg-.--..-..CA..UUU.G.U.UGC.C...GCUG...G...C.C.GAC..GU.GCUCACGCCCAACCUGCCCGAA.GCCGAAGC....................GCU...CA.C..CG..GCA....UC.GA.....C...A.........UC....CA...A...ACC......GA.UGCC...GAC.GC...CGA.AC...GC.........................................GC.C.GCC..CGUAUC..U.UGC...AGG...AA.GCC....G...GU.GUG....CAAA..CC...G..........................UGG..UGAUUA...A.AGG
   NZ_LT907975.1     CC.GGC...CCCGGC...AC...A...GC....C......U......C......UG.U.C...................................................................U.GA..U..GA..CCU.G.C.UGU.U...CAAU...C...U.G.GCA..AU.GAUCACCCCCAAUGAAACCGAA.GCCGAAGU....................GCU...GA.C..GG..GCG....UC.AC.....U...G.........UC....UC...A...GAC......GA.AGAC...UCG.GC...CCG.AC...AA.........................................GC.U.GCU..GAUAUU..U.UAC...AUG...GA.AAG....G...GU.AUC....GAAA..CC...G..........................UGA..UAAUCA...C.CCU
   NZ_LT960614.1     CC.CGC...UCCGGC...AG...C...CC....C......G......C......UG.C.C...................................................................C.GA..CgcCA..UCU.A.U.CCU.C...UCUG...C...-.-.GAC..UA.UAUCGCGCCCAACGAAACCGAG.GCCGCGAU....................GCU...GA.C..CG..GCA....U-.CG.....C...G.........CC...cGG...C...AAC......GA.GGAC...GAC.GC..aCGG.CG...GG.........................................CC.G.GCG..A-CAUC..C.UGC...UUC...AG.CGC....G...GC.GUC....GGCU..GC...G..........................CGC..UGAUCA...C.GCU
   NZ_OU594967.1     CC.AGC...UCCCGC...CC...A...AG....A......A......C......UC.C.C...................................................................C.CG..U..GA..GCU.G.C.UCG.C...CAAU...A...U.C.GAC..AU.CAUUACCCCCAAUGAAACCGAA.GCCGAAGU....................AUU...AA.C..AG..GGA....UA.GC.....C...G.........UA....AC...C...GAU......GA.AUCC...UCC.GC...UGA.AC...AA.........................................GC.U.GCG..AAAGUU..U.UAC...AUG...AU.UUA....G...GA.AUU....AAAG..UC...G..........................UCA..UGAUUA...C.ACU


   Structure         ((.(((....(((((...((...(...((..................................................................................................).)...)..))......).).))).....))))...)...........................((((.(((.(.((..........................)))......)..)).........)).)).......................................................(.((....((.................................................))...)))...........................(((....(......(((.....(((..................................)))...))).....).)))


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rbsD-rbsA-rbsC-rbsB-rbsZ-rbsK-rbsR



Position: 4482-4626, Conformation: #0







97% 90% 75% 50% Nucleotide present N N N Nucleotide identify E < 0.1 Base-pair covariation E < 0.05 Helix-level covariation 97% 90% 75%

C C G C C C G C U R R R Y U R Y U Y R Y G A Y U U A Y C C A A Y G A R A Y G A R G C R R Y U A C G G R U R U R R Y R R G Y R G C G C R Y U Y R R G G R Y R R G U U R U Y A C Y U 5'