rbsD-rbsA-rbsC-rbsB-rbsZ-rbsK-rbsR



Position: 1036-1180, Conformation: #0







DMS reactivity > 1.0 0.0 0.4 0.7 G/U/No data
Position: 0 (position.label in template: 0.5')5' Position: 1 (position.label in template: 1.A) Reactivity: nanA Position: 2 (position.label in template: 2.A) Reactivity: nanA Position: 3 (position.label in template: 3.A) Reactivity: nanA Position: 4 (position.label in template: 4.U) Reactivity: nanU Position: 5 (position.label in template: 5.C) Reactivity: nanC Position: 6 (position.label in template: 6.G) Reactivity: nanG Position: 7 (position.label in template: 7.C) Reactivity: nanC Position: 8 (position.label in template: 8.A) Reactivity: nanA Position: 9 (position.label in template: 9.A) Reactivity: nanA Position: 10 (position.label in template: 10.G) Reactivity: nanG Position: 11 (position.label in template: 11.G) Reactivity: nanG Position: 12 (position.label in template: 12.C) Reactivity: nanC Position: 13 (position.label in template: 13.C) Reactivity: nanC Position: 14 (position.label in template: 14.G) Reactivity: nanG Position: 15 (position.label in template: 15.C) Reactivity: nanC Position: 16 (position.label in template: 16.G) Reactivity: nanG Position: 17 (position.label in template: 17.G) Reactivity: nanG Position: 18 (position.label in template: 18.U) Reactivity: nanU Position: 19 (position.label in template: 19.A) Reactivity: nanA Position: 20 (position.label in template: 20.U) Reactivity: nanU Position: 21 (position.label in template: 21.U) Reactivity: nanU Position: 22 (position.label in template: 22.G) Reactivity: nanG Position: 23 (position.label in template: 23.U) Reactivity: nanU Position: 24 (position.label in template: 24.C) Reactivity: nanC Position: 25 (position.label in template: 25.U) Reactivity: nanU Position: 26 (position.label in template: 26.A) Reactivity: nanA Position: 27 (position.label in template: 27.U) Reactivity: nanU Position: 28 (position.label in template: 28.A) Reactivity: nanA Position: 29 (position.label in template: 29.U) Reactivity: nanU Position: 30 (position.label in template: 30.C) Reactivity: nanC Position: 31 (position.label in template: 31.U) Reactivity: nanU Position: 32 (position.label in template: 32.C) Reactivity: nanC Position: 33 (position.label in template: 33.C) Reactivity: nanC Position: 34 (position.label in template: 34.C) Reactivity: nanC Position: 35 (position.label in template: 35.A) Reactivity: nanA Position: 36 (position.label in template: 36.C) Reactivity: 0C Position: 37 (position.label in template: 37.C) Reactivity: 0C Position: 38 (position.label in template: 38.G) Reactivity: nanG Position: 39 (position.label in template: 39.C) Reactivity: 0C Position: 40 (position.label in template: 40.A) Reactivity: 1A Position: 41 (position.label in template: 41.U) Reactivity: nanU Position: 42 (position.label in template: 42.G) Reactivity: nanG Position: 43 (position.label in template: 43.A) Reactivity: 1A Position: 44 (position.label in template: 44.A) Reactivity: 1A Position: 45 (position.label in template: 45.A) Reactivity: 1A Position: 46 (position.label in template: 46.G) Reactivity: nanG Position: 47 (position.label in template: 47.A) Reactivity: 0.5A Position: 48 (position.label in template: 48.A) Reactivity: 0A Position: 49 (position.label in template: 49.A) Reactivity: 0A Position: 50 (position.label in template: 50.U) Reactivity: nanU Position: 51 (position.label in template: 51.C) Reactivity: 0C Position: 52 (position.label in template: 52.U) Reactivity: nanU Position: 53 (position.label in template: 53.U) Reactivity: nanU Position: 54 (position.label in template: 54.C) Reactivity: 0C Position: 55 (position.label in template: 55.G) Reactivity: nanG Position: 56 (position.label in template: 56.A) Reactivity: 1A Position: 57 (position.label in template: 57.G) Reactivity: nanG Position: 58 (position.label in template: 58.A) Reactivity: 1A Position: 59 (position.label in template: 59.U) Reactivity: nanU Position: 60 (position.label in template: 60.U) Reactivity: nanU Position: 61 (position.label in template: 61.U) Reactivity: nanU Position: 62 (position.label in template: 62.G) Reactivity: nanG Position: 63 (position.label in template: 63.C) Reactivity: 0C Position: 64 (position.label in template: 64.G) Reactivity: nanG Position: 65 (position.label in template: 65.A) Reactivity: 0.5A Position: 66 (position.label in template: 66.U) Reactivity: nanU Position: 67 (position.label in template: 67.G) Reactivity: nanG Position: 68 (position.label in template: 68.A) Reactivity: 0.5A Position: 69 (position.label in template: 69.C) Reactivity: 1C Position: 70 (position.label in template: 70.G) Reactivity: nanG Position: 71 (position.label in template: 71.U) Reactivity: nanU Position: 72 (position.label in template: 72.U) Reactivity: nanU Position: 73 (position.label in template: 73.A) Reactivity: 1A Position: 74 (position.label in template: 74.C) Reactivity: 1C Position: 75 (position.label in template: 75.C) Reactivity: 1C Position: 76 (position.label in template: 76.G) Reactivity: nanG Position: 77 (position.label in template: 77.U) Reactivity: nanU Position: 78 (position.label in template: 78.U) Reactivity: nanU Position: 79 (position.label in template: 79.U) Reactivity: nanU Position: 80 (position.label in template: 80.U) Reactivity: nanU Position: 81 (position.label in template: 81.U) Reactivity: nanU Position: 82 (position.label in template: 82.C) Reactivity: 0C Position: 83 (position.label in template: 83.G) Reactivity: nanG Position: 84 (position.label in template: 84.U) Reactivity: nanU Position: 85 (position.label in template: 85.G) Reactivity: nanG Position: 86 (position.label in template: 86.A) Reactivity: 1A Position: 87 (position.label in template: 87.U) Reactivity: nanU Position: 88 (position.label in template: 88.G) Reactivity: nanG Position: 89 (position.label in template: 89.G) Reactivity: nanG Position: 90 (position.label in template: 90.G) Reactivity: nanG Position: 91 (position.label in template: 91.C) Reactivity: 0.5C Position: 92 (position.label in template: 92.A) Reactivity: 0A Position: 93 (position.label in template: 93.A) Reactivity: 0A Position: 94 (position.label in template: 94.U) Reactivity: nanU Position: 95 (position.label in template: 95.U) Reactivity: nanU Position: 96 (position.label in template: 96.U) Reactivity: nanU Position: 97 (position.label in template: 97.A) Reactivity: 0.5A Position: 98 (position.label in template: 98.U) Reactivity: nanU Position: 99 (position.label in template: 99.U) Reactivity: nanU Position: 100 (position.label in template: 100.G) Reactivity: nanG Position: 101 (position.label in template: 101.C) Reactivity: 0C Position: 102 (position.label in template: 102.U) Reactivity: nanU Position: 103 (position.label in template: 103.G) Reactivity: nanG Position: 104 (position.label in template: 104.A) Reactivity: 0.5A Position: 105 (position.label in template: 105.G) Reactivity: nanG Position: 106 (position.label in template: 106.C) Reactivity: 1C Position: 107 (position.label in template: 107.G) Reactivity: nanG Position: 108 (position.label in template: 108.C) Reactivity: 0C Position: 109 (position.label in template: 109.G) Reactivity: nanG Position: 110 (position.label in template: 110.A) Reactivity: 0.5A Position: 111 (position.label in template: 111.A) Reactivity: 0.5A Position: 112 (position.label in template: 112.G) Reactivity: nanG Position: 113 (position.label in template: 113.U) Reactivity: nanU Position: 114 (position.label in template: 114.G) Reactivity: nanG Position: 115 (position.label in template: 115.G) Reactivity: nanG Position: 116 (position.label in template: 116.C) Reactivity: 0C Position: 117 (position.label in template: 117.A) Reactivity: 0.5A Position: 118 (position.label in template: 118.U) Reactivity: nanU Position: 119 (position.label in template: 119.C) Reactivity: 0C Position: 120 (position.label in template: 120.A) Reactivity: 0.5A Position: 121 (position.label in template: 121.C) Reactivity: 1C Position: 122 (position.label in template: 122.U) Reactivity: nanU Position: 123 (position.label in template: 123.G) Reactivity: nanG Position: 124 (position.label in template: 124.A) Reactivity: 1A Position: 125 (position.label in template: 125.C) Reactivity: 1C Position: 126 (position.label in template: 126.C) Reactivity: 0C Position: 127 (position.label in template: 127.G) Reactivity: nanG Position: 128 (position.label in template: 128.A) Reactivity: 0A Position: 129 (position.label in template: 129.A) Reactivity: 0A Position: 130 (position.label in template: 130.G) Reactivity: nanG Position: 131 (position.label in template: 131.A) Reactivity: 1A Position: 132 (position.label in template: 132.U) Reactivity: nanU Position: 133 (position.label in template: 133.U) Reactivity: nanU Position: 134 (position.label in template: 134.C) Reactivity: 0C Position: 135 (position.label in template: 135.G) Reactivity: nanG Position: 136 (position.label in template: 136.C) Reactivity: 1C Position: 137 (position.label in template: 137.U) Reactivity: nanU Position: 138 (position.label in template: 138.G) Reactivity: nanG Position: 139 (position.label in template: 139.A) Reactivity: 1A Position: 140 (position.label in template: 140.U) Reactivity: nanU Position: 141 (position.label in template: 141.U) Reactivity: nanU Position: 142 (position.label in template: 142.G) Reactivity: nanG Position: 143 (position.label in template: 143.A) Reactivity: 0.5A Position: 144 (position.label in template: 144.G) Reactivity: nanG Position: 145 (position.label in template: 145.A) Reactivity: 1A Position: 146 (position.label in template: 146.U) Reactivity: nanU Position: 147 (position.label in template: 147.G) Reactivity: nanG Position: 148 (position.label in template: 148.A) Reactivity: 0.5A Position: 149 (position.label in template: 149.U) Reactivity: nanU Position: 150 (position.label in template: 150.G) Reactivity: nanG Position: 151 (position.label in template: 151.G) Reactivity: nanG Position: 152 (position.label in template: 152.U) Reactivity: nanU Position: 153 (position.label in template: 153.G) Reactivity: nanG Position: 154 (position.label in template: 154.G) Reactivity: nanG Position: 155 (position.label in template: 155.G) Reactivity: nanG Position: 156 (position.label in template: 156.U) Reactivity: nanU Position: 157 (position.label in template: 157.C) Reactivity: nanC Position: 158 (position.label in template: 158.G) Reactivity: nanG Position: 159 (position.label in template: 159.C) Reactivity: nanC Position: 160 (position.label in template: 160.A) Reactivity: nanA Position: 161 (position.label in template: 161.A) Reactivity: nanA Position: 162 (position.label in template: 162.G) Reactivity: nanG Position: 163 (position.label in template: 163.C) Reactivity: nanC Position: 164 (position.label in template: 164.U) Reactivity: nanU Position: 165 (position.label in template: 165.G) Reactivity: nanG Position: 166 (position.label in template: 166.G) Reactivity: nanG Position: 167 (position.label in template: 167.A) Reactivity: nanA Position: 168 (position.label in template: 168.A) Reactivity: nanA Position: 169 (position.label in template: 169.G) Reactivity: nanG Position: 170 (position.label in template: 170.A) Reactivity: nanA Position: 171 (position.label in template: 171.U) Reactivity: nanU Position: 172 (position.label in template: 172.C) Reactivity: nanC Position: 173 (position.label in template: 173.A) Reactivity: nanA Position: 174 (position.label in template: 174.A) Reactivity: nanA Position: 175 (position.label in template: 175.U) Reactivity: nanU Position: 176 (position.label in template: 176.A) Reactivity: nanA Position: 177 (position.label in template: 177.U) Reactivity: nanU Position: 178 (position.label in template: 178.C) Reactivity: nanC Position: 179 (position.label in template: 179.C) Reactivity: nanC Position: 180 (position.label in template: 180.G) Reactivity: nanG Position: 181 (position.label in template: 181.C) Reactivity: nanC Position: 182 (position.label in template: 182.A) Reactivity: nanA Position: 183 (position.label in template: 183.C) Reactivity: nanC Position: 184 (position.label in template: 184.C) Reactivity: nanC Position: 185 (position.label in template: 185.U) Reactivity: nanU Position: 186 (position.label in template: 186.3')3' 10 20 30 50 100 150


rbsD-rbsA-rbsC-rbsB-rbsZ-rbsK-rbsR



Position: 1036-1180, Conformation: #0







Retained alignments:


   NC_002570.2       AGG....U....GU.U...G..G...C.A.U.U.A......UAU.......A..C.......A..UUAC..UC.AUA.AAAU.....GA.....GCGAACUGGAUGAAAUUGCU.G.AU.GACAUUUCUGUUUUUCGUGAU.GG..C.A..A..G.U...A...CAU......................................UGG..U...A.C...G.G.....A...U.A......C....A....G.....C.....G...A...A...A..A..A...C...U.....U..A...AC...G.A...G...A.....G..A.U.GA....C.UU..GA.....UU..A...AA.....A...UG...AU....G.GU...CGG.U.C.G..C..G.AA....UU..G..A..A.....C..C..A..-..-AA..U.U..U...U...C..G..AuaaA.....C.CU
   NC_003317.1       CGG....A....AA.A...G..G...C.A.U.U.G......UCU.......A..U.......G..UCUC..CC.AUC.GCCU.....GU.....CGGAAAUUUUUCAGAUUGCC.G.AU.AGCUAUACCGUGUUUCGCGAC.GG..C.A..G..U.U...A...UA-ucg............................auag...CGG..C...G.A...U.C.....U...C.G......-....-....G.....U.....G...G...C...A..U..C...A...C.....-..-...--...C.C...G...U.....G..C.G.GA....A.CU..GA.....UC..C...AU.....A...UG...AU....C.GU...CGG.G.C.G..G..G.AA....CU..G..G..G.....U..G..A..G..GAA..U.A..U...A...U..C..A...A.....-.--
   NC_003869.1       AAG....-....-A.A...G..G...G.A.A.-.G......UCUaucauuuA..U.......A..UUUC..UC.AUA.GGAU.....GA.....AUGAAAUUUUUGAGAUUUGC.G.AU.GACUAUAUUGUUUUAAGAGAU.GG..G.U..G..C.C...U...UAU......................................UUC..U...C.A...A.G.....G...G.G......A....A....A.....U.....U...A...G...U..G..A...A...G.....U..U...AC...A.C...G...U.....G..A.U.GA....U.UU..AG.....UA..A...AG.....A...UG...AU....G.GU...GGG.U.A.G..G..G.AG....UU..A..A..A.....A..G..A..G..CAU..U.U..U...C...C..U..U...-.....-.--
   NC_004578.1       GGG....C....AA.A...G..G...C.A.U.C.A......UCU.......A..C.......A..UCAC..CC.ACA.AGAU.....GA.....AUGAAGUGUUCAAGAUCGCC.G.AC.GAAGUGGCGGUGUUUCGUGAU.G-..-.-..-..-.-...-...---gcaccuaca.................uuggccugc...---..-...-.A...G.C.....G...C.G......-....-....C.....C.....G...A...A...A..G..C...A...U.....G..G...A-...U.G...G...C.....G..A.C.AG....C.CU..GA.....UC..U...CG.....A...UG...AU....G.GU...CGG.U.C.G..C..G.AG....U-..U..G..A....cC..C..A..A..UUA..U.U..C...C...C..G..-...-.....-.--
   NC_004605.1       AGG....C....UG.C...G..G...C.A.U.U.G......UAU.......A..U.......A..UCUC..AC.ACC.GCCU.....GA.....AAGAAAUCUUUGAAAUCUGU.G.AC.GACAUUACCGUGCUUCGUGAC.GG..U.A..A..A.U...U...UAU......................................CGG..U...G.A...A.U.....G...C.C......G....A....G.....U.....A...G...C...A..G..A...C...A.....C..G...GA...U.G...A...A.....G..A.C.GG....C.UU..AA.....UC..G...AA.....A...UG...AU....G.GU...UGG.C.C.G..U..A.AA....UU..A..G..A.....G..G..A..G..CAA..U.A..C...C...C..A..C...G.....U.AU
   NC_005027.1       UGU....C....G-.-...-..C...G.A.U.C.G......UCU.......A..U.......A..UCAC..UC.ACC.GCUU.....GG.....AAGAACUCGAACAGAUUGCU.G.AC.GACAUUGUCGUGAUGCGUGAU.GG..U.U..G..C.U...U...GAU......................................CGG..C...A.C...G.G.....C...C.G......A....G....U.....U.....U...G...G...U..G..A...G...C.....U..C...AG...C.C...A...C.....G..A.C.GC....A.AU..GG.....UU..C...GA.....A...UG...AU....G.GU...UGG.A.C.G..A..G.AU....-G..U..G..A.....A..A..A..U..CCU..U.U..-...-...C..C..A...A.....G.CA
   NC_005125.1       CGG....A....GG.GcacG..G...C.A.A.U.U.....aUCU.......A..C.......A..UCUC..CC.ACC.GCCU.....GG.....AGGAAAUCUUUGCCCUUUGC.G.AU.CGGGUGACGAUUCUGCGCAAC.G-..G.-..-..-.-...-...---caggcgcguc...............cacugcgcug...--C..G...G.U...G.G.....G...C.G......A....A....C.....U.....G...U...C...-..-..-...-...-.....-..-...--...G.A...U...G.....G..C.G.GC....G.GU..GG.....UG..C...GC.....C...AC...AU....G.GU...GGG.C.C.G..C..A.CC....CU..C..G..A.....A..-..-..-..---..-.-..-...-...C..C..C...A.....C.CG
   NC_005126.1       GAG....A....UG.U...G..G...C.A.U.U.G......UUU.......A..U.......A..UCUC..CC.AUC.GUUU.....GA.....GAGAAAUUUUUGAAAUUUGC.G.AU.GAUGUAACGGUAUUUCGUGAU.GG..A.C..A..A.U...U...UAU......................................UGG..U...G.A...A.A.....A...G.U......C....A....G.....U.....A...A...A...A..G..A...G...C.....U..A...AA...A.G...A...A.....G..A.G.AC....U.CU..GA.....UU..G...AA.....A...UG...AU....G.GU...UGG.G.C.G..A..A.AA....CU..G..G..A.....A..G..A..U..CAG..U.A..U...C...C..U..C...G.....C.CU
   NC_006300.1       GUU....-....-G.C...G..G...A.A.U.C.G......UUU.......A..U.......A..UUUC..CC.ACA.AAAU.....GG.....AUGAAAUCUUUAAAAUUUGC.G.AU.GAAAUUACCAUUUUGCGCGAC.GG..U.A..A..A.U...G...GAU......................................UAA..U...A.C...GgU.....G...CcGg....uA....A....A.....A.....G...G...C...U..C..C...A...C.....U..A...UG...-.-...-...-.....G..A.A.CA....A.AU..UG.....UC..G...CC.....A...UG...AU....G.GU...AGG.C.C.G..U..G.AA....UU..A..A..C.....G..C..A..A..CGC..U.U..C...C...C..G..C...C.....A.AA
   NC_007618.1       CGG....A....AA.A...G..G...C.A.U.U.G......UCU.......A..U.......G..UCUC..CC.AUC.GCCU.....GU.....CGGAAAUUUUUCAGAUUGCC.G.AU.AGCUAUACCGUGUUUCGCGAC.GG..C.A..G..U.U...A...UAU......................................CGA..U...A.G...C.G.....G...C.G......G....UcucgG.....U.....G...G...C...A..U..C...A...C.....-..-...--...C.C...G...U.....G..C.G.GA....A.CU..GA.....UC..C...AU.....A...UG...AU....C.GU...CGG.G.C.G..G..G.AA....CU..G..G..G.....U..G..A..G..GAA..U.A..U...A...U..C..A...A.....-.--
   NC_007645.1       GGG....C....GU.A...G..G...C.A.U.G.G......UGU.......U..U.......A..UUUC..UC.AUC.ACAU.....GG.....AAGAGAUCUAUGAGAUUUGC.G.AU.CGCAUCACUGUUUUGCGGGAC.GG..C.G..A..G.A...A...AAU......................................CGG..C...G.A...U.C.....G...C.G......A....G....G.....U.....C...G...G...C..G..A...G...G.....U..G...GC...G.G...U...G.....G..A.C.GA....G.CU..GC.....UG..G...AA.....A...UG...AU....G.GU...GGG.C.C.G..C..A.--....--..A..A..A.....U..C..A..G..CAA..U.A..G...C...U..U..U...C.....C.G-
   NC_007712.1       CGG....C....UG.C...G..G...C.A.U.C.G......UUU.......A..C.......A..UCUC..CC.AUA.AAAU.....GG.....AAGAAAUAUUUCAGCUGUGC.G.AC.GAAAUCACUAUUUUGCGUGAU.GG..A.C..A..A.U...G...GAU......................................UGC..C...A.C...U.C.....A...G.C......C....G....G.....U.....A...G...A...G..G..G...G...C.....U..G...AG...U.A...U...G.....G..A.C.CA....G.AU..UA.....UC..G...CC.....A...UG...AU....G.GU...GGG.C.C.G..U..U.CG....CU..G..A..G.....U..C..A..G..CAC..U.U..U...C...C..C..G...A.....U.CG
   NC_007908.1       AGG....C....GU.A...G..G...C.A.U.U.A......UCU.......A..C.......A..UCAC..CC.AUC.GAAU.....UC.....AGGAGAUCAAACGCCUGGCU.G.AU.CGCGUCACCGUACUGCGUGAC.GG..G.A..A..A.C...A...CAU......................................UGG..U...G.U...C.G.....U...C.G......A....U....G.....C.....U...G...C...G..A..C...G...A.....C..C...AC...U.G...A...A.....G..C.C.AA....A.CU..CA.....UU..G...AA.....A...UG...AU....G.GC...UGG.A.C.G..C..A.CC....GUcgA..G..A.....A..G..A..U..UUA..U.C..-...C...C..U..C...C.....A.UU
   NC_008688.1       GGG....C....AC.C...G..C...C.A.U.C.A......UCU.......A..U.......A..UCUC..GC.ACC.GCAU.....GG.....AAGAGAUCAUGCGGCUAUCC.G.AC.GAUAUCACCGUCAUCCGGGAC.GG..C.G..C..C.U...A...---uguc..........................gcgau...GCG..C...A.A...G.C.....G...C.G......A....C....G.....A.....G...A...C...C..U..C...C...-.....-..-...AU...C.G...A...G.....G..-.-.-A....G.CU..UA.....UC..G...CG.....C...UG...AU....G.GU...CGG.C.C.G..C..A.GG....AU..G..G..A.....U..G..A..G..AUC..U.A..U...C...C..G..-...-.....-.--
   NC_009142.1       GGG....C....AU.C...G..C...C.G.U.C.C......UCU.......A..C.......A..UCUC..GC.ACC.GGCU.....GG.....ACGAGAUCUUCGAGAUCGGC.G.AC.CGGGUGACCGUGAUGCGCGAC.G-..-.-..-..-.-...-...---gcgcgguggu...............cgacacccac...---..-...-.-...-.-.....C...C.G......-....-....G.....U.....G...U...C...C..G..A...A...C.....U..G...GA...C.G...A...A.....G..C.C.AG....G.CU..GG.....UC..C...AG.....C...UC...AU....G.GU...CGG.C.C.G..C..G.AC....GU..G..G..A.....G..A..AccU..CUA..C.C..C...G...C..G..A...A.....C.CC
   NC_009792.1       GGG....G....CG.C...G..G...C.A.U.U.G......UCU.......A..U.......A..UCUC..CC.ACC.GCAU.....GA.....AAGAGAUCUUCGAAAUUUGC.G.AU.GACGUGACGGUUUUCCGCGAC.GG..G.C..A..G.U...U...UAU......................................UGC..C...G.A...G.C.....G...U.G......A....A....G.....U.....G...G...C...A..U..C...G...C.....U..G...AC...C.G...A...A.....G..A.U.UC....G.CU..GA.....UU..G...AA.....A...UG...AU....G.GU...CGG.A.C.G..U..A.AG....CU..U..G..A.....A..G..A..U..CAG..U.A..C...C...C..G..C...G.....U.CU
   NC_009901.1       AGG....C....UG.C...G..G...C.A.U.C.G......UUU.......A..U.......A..UCUC..GC.ACC.GUAU.....GC.....AAGAGAUCUUUACCAUUUGU.G.AC.GCGGUGACUGUGCUGCGUGAC.GG..U.G..G..C.U...U...UAU......................................CGA..C...G.A...A.U.....C...U.G......C....U....A.....U.....C...G...C...A..G..A...G...A.....U..C...AC...U.G...A...A.....G..A.U.CA....G.CU..GA.....UU..G...AG.....C...GU...AU....G.GU...AGG.C.C.G..C..A.AA....CU..G..G..C.....A..G..A..C..CAA..U.A..U...C...C..A..Cg.uA.....U.C-
   NC_010001.1       AGG....U....GU.U...G..G...A.A.U.G.G......UAU.......A..U.......A..UUUC..UC.AUC.GUAU.....GG.....AUGAACUUAAGCAAAUAUGU.G.AA.CGCGCUACAGUUAUUCGAGAU.GG..A.C..A..A.U...A...UAU......................................CG-..-...G.A...A.C.....A...A.GaagcuuA....A....G.....U.....G...A...C...A..U..U...A...-.....-..-...-C...U.U...U...A.....G..A.U.GA....A.UU..GG.....UU..A...AU.....A...UG...AU....U.GU...UGG.A.C.G..U..U.CC....CU..U..G..A.....A..G..A..U..AAA..U.U..U...C...C..A..A...A.....-.--
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   NZ_LT906448.1     AAA....A....CG.U...G..G...C.A.U.U.G......UUU.......A..U.......A..UUUC..UC.ACC.GUAU.....CA.....AAGAAAUUUUUGAAAUUUGU.G.AU.GAUGUGACGGUAUUACGUGAU.GG..U.C..A..A.U...U...UAU......................................UGG..U...G.A...A.C.....G...U.G......C....U....G.....U.....A...U...C...U..G..A...U...U.....U..A...GA...C.G...A...A.....G..A.C.AG....U.CU..AA.....UU..G...AA.....A...UG...AU....G.GU...AGG.A.C.G..U..C.GU....UU..A..G..A.....U..G..A..A..CAA..U.A..U...C...C..A..C...A.....U.UU
   NZ_LT906479.1     AGG....C....CG.C...G..G...G.A.U.U.G......UCU.......A..U.......A..UUUC..GC.ACC.GCUU.....GA.....AAGAGAUCUUUGAAAUUUGC.G.AU.GACGUCACGGUGUUCCGCGAC.GG..C.C..A..G.U...U...UAU......................................CGC..C...G.A...G.C.....G...C.C......C....G....G.....U.....A...A...G...C..G..A...G...C.....U..G...CA...G.G...A...G.....G..A.U.CG....G.CU..UA.....UC..G...AA.....A...UG...AU....G.GU...CGG.C.C.G..C..A.AG....CU..G..G..A.....G..G..A..G..CAG..U.A..U...C...C..G..C...G.....G.CU
   NZ_LT907975.1     AC-....-....-G.U...G..G...C.A.U.C.G......UGU.......A..C.......A..UUUC..GC.AUC.GGCU.....CA.....AGGAAAUAUUUGAAAUCUGC.G.AC.GACGUAACCGUACUGCGUGAC.GG..C.A..A..U.U...U...CAU......................................CGG..A...G.-...A.A.....G...C.G......C...cG....G.....U.....U...G...C...C..G..A...U...A.....U..G...GA...U.G...A...G.....G..A.A.GC....G.UU..GA.....UC..G...AG.....A...UG...AU....G.GU...CGG.A.C.G..C..C.GA....CU..G..G..A.....G..G..A..G..CAG..U.A..C...C...C..G..C...G.....A.GU
   NZ_LT990039.1     GGG....G....AU.A...G..G...A.A.U.U.A......UCU.......A..C.......A..UUUC..CC.AUC.GUAU.....GA.....GCGAGCUCUUUGAGAUCGGC.G.AC.GUAUGUACGGUUAUGCGUGAC.GG..A.G..A..A.U...A...---ugua..........................ggaac...UGU..U...A.A...C.A.....U...C.A......A....A....G.....A.....U...A...C...U..U..-...-...-.....-..-...-C...C.G...A...A.....G..A.U.GA....G.CU..GA.....CC..G...AA.....A...UG...AU....G.GU...UGG.G.C.G..G..A.AA....GU..A..A..GcuuugA..G..A..-..AAA..U.U..G...A...C..-..A...A.....U.CC
   NZ_OK052578.1     GGG....U....UA.U...G..C...G.A.U.U.A......UUU.......A..U.......A..UUUC..UC.ACA.GAAU.....GG.....AUGAGAUUUUCGAAAUUUGU.G.AU.CGCAUCACGAUCUUGCGUGAU.GG..U.C..A..A.U...A...UAU......................................U-A..C...A.A...C.C.....G...A.G......G....A....U.....U.....Gu.aG...U...G..A..A...A...C.....U..G...AU...C.U...-...U.....G..A.U.AC....A.GU..UA.....UU..C...AG.....C...AU...AU....U.GU...AGG.A.C.-..-..-.--....--..A..A..G.....A..A..U..U..UGA..C.C.aA...G...C..C..U...U.....-.--
   NZ_OU594967.1     ---....C....C-.-...G..G...C.A.U.U.G......UUU.......A..U.......A..UCUC..UC.AUC.GGCU.....CA.....AAGAGAUCUUUGAGAUUUGU.G.AC.GAUAUAACCGUGCUGCGUGAU.GG..C.A..A..A.U...U...UAU......................................CGA..U...C.A...A.C.....G...U.A......A....A....G.....U....cA...G...C...G..A..U...A...U.....U..G...A-...U.G...A...A.....G..A.A.CG....A.UU..GA.....UC..G...AG.....A...AG...AU....G.GU...CGG.G.C.G..G..C.GA....CU..G..G..A.....U..G..A..A..CAG..U.A..U...C...C..A..A...G.....G.G-


   Structure         (((..........(.(...(..(...(.(.(.(.(......(((.....................((((..((.(((.((................................)).....................(((.....(..(.(..(.....................................................)))..).................)...).)................................................................................................................................................).))...))).......................)..)..).....)..)..).....)))..).)......)...)..)..).........).))


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rbsD-rbsA-rbsC-rbsB-rbsZ-rbsK-rbsR



Position: 1036-1180, Conformation: #0







97% 90% 75% 50% Nucleotide present N N N Nucleotide identify E < 0.1 Base-pair covariation E < 0.05 Helix-level covariation 97% 90% 75%

R G G G A U Y R U Y U A Y A U Y U C C A Y C R U G R A G A R A U Y U U Y R R R A U Y Y G A Y R R U A C G U U C G G A Y G G Y R R Y R Y R G A U R U Y R R R R Y R A U G G U G G C G R R U R R R A Y U Y Y Y 5'