ptsH-ptsI-crr



Position: 1452-1571, Conformation: #1







DMS reactivity > 1.0 0.0 0.4 0.7 G/U/No data
Position: 0 (position.label in template: 0.5')5' Position: 1 (position.label in template: 1.C) Reactivity: nanC Position: 2 (position.label in template: 2.U) Reactivity: nanU Position: 3 (position.label in template: 3.G) Reactivity: nanG Position: 4 (position.label in template: 4.A) Reactivity: nanA Position: 5 (position.label in template: 5.A) Reactivity: nanA Position: 6 (position.label in template: 6.G) Reactivity: nanG Position: 7 (position.label in template: 7.G) Reactivity: nanG Position: 8 (position.label in template: 8.C) Reactivity: nanC Position: 9 (position.label in template: 9.G) Reactivity: nanG Position: 10 (position.label in template: 10.U) Reactivity: nanU Position: 11 (position.label in template: 11.U) Reactivity: nanU Position: 12 (position.label in template: 12.G) Reactivity: nanG Position: 13 (position.label in template: 13.G) Reactivity: nanG Position: 14 (position.label in template: 14.U) Reactivity: nanU Position: 15 (position.label in template: 15.C) Reactivity: nanC Position: 16 (position.label in template: 16.U) Reactivity: nanU Position: 17 (position.label in template: 17.G) Reactivity: nanG Position: 18 (position.label in template: 18.U) Reactivity: nanU Position: 19 (position.label in template: 19.A) Reactivity: nanA Position: 20 (position.label in template: 20.U) Reactivity: nanU Position: 21 (position.label in template: 21.C) Reactivity: nanC Position: 22 (position.label in template: 22.G) Reactivity: nanG Position: 23 (position.label in template: 23.U) Reactivity: nanU Position: 24 (position.label in template: 24.A) Reactivity: nanA Position: 25 (position.label in template: 25.C) Reactivity: nanC Position: 26 (position.label in template: 26.U) Reactivity: nanU Position: 27 (position.label in template: 27.G) Reactivity: nanG Position: 28 (position.label in template: 28.A) Reactivity: nanA Position: 29 (position.label in template: 29.G) Reactivity: nanG Position: 30 (position.label in template: 30.U) Reactivity: nanU Position: 31 (position.label in template: 31.U) Reactivity: nanU Position: 32 (position.label in template: 32.C) Reactivity: nanC Position: 33 (position.label in template: 33.C) Reactivity: 1C Position: 34 (position.label in template: 34.U) Reactivity: nanU Position: 35 (position.label in template: 35.G) Reactivity: nanG Position: 36 (position.label in template: 36.U) Reactivity: nanU Position: 37 (position.label in template: 37.U) Reactivity: nanU Position: 38 (position.label in template: 38.C) Reactivity: 0C Position: 39 (position.label in template: 39.A) Reactivity: 0.5A Position: 40 (position.label in template: 40.U) Reactivity: nanU Position: 41 (position.label in template: 41.G) Reactivity: nanG Position: 42 (position.label in template: 42.G) Reactivity: nanG Position: 43 (position.label in template: 43.A) Reactivity: 1A Position: 44 (position.label in template: 44.C) Reactivity: 0C Position: 45 (position.label in template: 45.C) Reactivity: 0C Position: 46 (position.label in template: 46.G) Reactivity: nanG Position: 47 (position.label in template: 47.C) Reactivity: 0C Position: 48 (position.label in template: 48.G) Reactivity: nanG Position: 49 (position.label in template: 49.A) Reactivity: 0.5A Position: 50 (position.label in template: 50.C) Reactivity: 0.5C Position: 51 (position.label in template: 51.G) Reactivity: nanG Position: 52 (position.label in template: 52.C) Reactivity: 0C Position: 53 (position.label in template: 53.A) Reactivity: 0.5A Position: 54 (position.label in template: 54.C) Reactivity: 0C Position: 55 (position.label in template: 55.U) Reactivity: nanU Position: 56 (position.label in template: 56.G) Reactivity: nanG Position: 57 (position.label in template: 57.C) Reactivity: 0C Position: 58 (position.label in template: 58.C) Reactivity: 0C Position: 59 (position.label in template: 59.C) Reactivity: 0C Position: 60 (position.label in template: 60.A) Reactivity: 0A Position: 61 (position.label in template: 61.C) Reactivity: 0C Position: 62 (position.label in template: 62.U) Reactivity: nanU Position: 63 (position.label in template: 63.G) Reactivity: nanG Position: 64 (position.label in template: 64.A) Reactivity: 0.5A Position: 65 (position.label in template: 65.A) Reactivity: 0.5A Position: 66 (position.label in template: 66.G) Reactivity: nanG Position: 67 (position.label in template: 67.A) Reactivity: 0.5A Position: 68 (position.label in template: 68.A) Reactivity: 0A Position: 69 (position.label in template: 69.G) Reactivity: nanG Position: 70 (position.label in template: 70.A) Reactivity: 0.5A Position: 71 (position.label in template: 71.A) Reactivity: 1A Position: 72 (position.label in template: 72.C) Reactivity: 0C Position: 73 (position.label in template: 73.A) Reactivity: 0A Position: 74 (position.label in template: 74.G) Reactivity: nanG Position: 75 (position.label in template: 75.U) Reactivity: nanU Position: 76 (position.label in template: 76.U) Reactivity: nanU Position: 77 (position.label in template: 77.U) Reactivity: nanU Position: 78 (position.label in template: 78.G) Reactivity: nanG Position: 79 (position.label in template: 79.C) Reactivity: 0C Position: 80 (position.label in template: 80.U) Reactivity: nanU Position: 81 (position.label in template: 81.G) Reactivity: nanG Position: 82 (position.label in template: 82.C) Reactivity: 0C Position: 83 (position.label in template: 83.U) Reactivity: nanU Position: 84 (position.label in template: 84.U) Reactivity: nanU Position: 85 (position.label in template: 85.A) Reactivity: 0.5A Position: 86 (position.label in template: 86.C) Reactivity: 1C Position: 87 (position.label in template: 87.A) Reactivity: 0.5A Position: 88 (position.label in template: 88.A) Reactivity: 0A Position: 89 (position.label in template: 89.A) Reactivity: 0A Position: 90 (position.label in template: 90.G) Reactivity: nanG Position: 91 (position.label in template: 91.C) Reactivity: 0C Position: 92 (position.label in template: 92.A) Reactivity: 0A Position: 93 (position.label in template: 93.G) Reactivity: nanG Position: 94 (position.label in template: 94.U) Reactivity: nanU Position: 95 (position.label in template: 95.G) Reactivity: nanG Position: 96 (position.label in template: 96.G) Reactivity: nanG Position: 97 (position.label in template: 97.C) Reactivity: 0C Position: 98 (position.label in template: 98.U) Reactivity: nanU Position: 99 (position.label in template: 99.G) Reactivity: nanG Position: 100 (position.label in template: 100.A) Reactivity: 1A Position: 101 (position.label in template: 101.A) Reactivity: 0.5A Position: 102 (position.label in template: 102.G) Reactivity: nanG Position: 103 (position.label in template: 103.C) Reactivity: 0C Position: 104 (position.label in template: 104.G) Reactivity: nanG Position: 105 (position.label in template: 105.U) Reactivity: nanU Position: 106 (position.label in template: 106.G) Reactivity: nanG Position: 107 (position.label in template: 107.U) Reactivity: nanU Position: 108 (position.label in template: 108.G) Reactivity: nanG Position: 109 (position.label in template: 109.G) Reactivity: nanG Position: 110 (position.label in template: 110.C) Reactivity: 0C Position: 111 (position.label in template: 111.U) Reactivity: nanU Position: 112 (position.label in template: 112.C) Reactivity: 0C Position: 113 (position.label in template: 113.G) Reactivity: nanG Position: 114 (position.label in template: 114.C) Reactivity: 0C Position: 115 (position.label in template: 115.A) Reactivity: 0.5A Position: 116 (position.label in template: 116.A) Reactivity: 1A Position: 117 (position.label in template: 117.G) Reactivity: nanG Position: 118 (position.label in template: 118.C) Reactivity: 0C Position: 119 (position.label in template: 119.G) Reactivity: nanG Position: 120 (position.label in template: 120.G) Reactivity: nanG Position: 121 (position.label in template: 121.U) Reactivity: nanU Position: 122 (position.label in template: 122.U) Reactivity: nanU Position: 123 (position.label in template: 123.A) Reactivity: 1A Position: 124 (position.label in template: 124.U) Reactivity: nanU Position: 125 (position.label in template: 125.C) Reactivity: 0.5C Position: 126 (position.label in template: 126.G) Reactivity: nanG Position: 127 (position.label in template: 127.U) Reactivity: nanU Position: 128 (position.label in template: 128.U) Reactivity: nanU Position: 129 (position.label in template: 129.C) Reactivity: nanC Position: 130 (position.label in template: 130.G) Reactivity: nanG Position: 131 (position.label in template: 131.U) Reactivity: nanU Position: 132 (position.label in template: 132.A) Reactivity: nanA Position: 133 (position.label in template: 133.C) Reactivity: nanC Position: 134 (position.label in template: 134.C) Reactivity: nanC Position: 135 (position.label in template: 135.A) Reactivity: nanA Position: 136 (position.label in template: 136.U) Reactivity: nanU Position: 137 (position.label in template: 137.G) Reactivity: nanG Position: 138 (position.label in template: 138.G) Reactivity: nanG Position: 139 (position.label in template: 139.A) Reactivity: nanA Position: 140 (position.label in template: 140.C) Reactivity: nanC Position: 141 (position.label in template: 141.A) Reactivity: nanA Position: 142 (position.label in template: 142.U) Reactivity: nanU Position: 143 (position.label in template: 143.C) Reactivity: nanC Position: 144 (position.label in template: 144.G) Reactivity: nanG Position: 145 (position.label in template: 145.G) Reactivity: nanG Position: 146 (position.label in template: 146.C) Reactivity: nanC Position: 147 (position.label in template: 147.G) Reactivity: nanG Position: 148 (position.label in template: 148.G) Reactivity: nanG Position: 149 (position.label in template: 149.C) Reactivity: nanC Position: 150 (position.label in template: 150.G) Reactivity: nanG Position: 151 (position.label in template: 151.A) Reactivity: nanA Position: 152 (position.label in template: 152.C) Reactivity: nanC Position: 153 (position.label in template: 153.A) Reactivity: nanA Position: 154 (position.label in template: 154.A) Reactivity: nanA Position: 155 (position.label in template: 155.A) Reactivity: nanA Position: 156 (position.label in template: 156.G) Reactivity: nanG Position: 157 (position.label in template: 157.A) Reactivity: nanA Position: 158 (position.label in template: 158.G) Reactivity: nanG Position: 159 (position.label in template: 159.C) Reactivity: nanC Position: 160 (position.label in template: 160.U) Reactivity: nanU Position: 161 (position.label in template: 161.3')3' 10 20 30 50 100 150


ptsH-ptsI-crr



Position: 1452-1571, Conformation: #1







Retained alignments:


   NC_002570.2       CCUUUAC.CGA...ACAGA.G......U...U....U....U...U.AU....A....U..A..U.G.G...A...U...C..G..C...G...A....U.C.A.....G...C....U.U.C.C..G..A.C.....G..G...AA...GA.GGA...GC..AAUU.U...GA....A....G.C.A.UA...C...A...A...................................................................G...G...A..-.-.-.....A.GU...U....G....UacA.G..C.....G..A..A...U....G...G..A..C.G.......G..A..A.A.......G..C...cU.....G.U...U....G.U.C.A...UU.C.GCA.C.CC...U.A...GAUA....UU.GGGG.G..A.GA.UA.A...G..GA
   NC_003317.1       CCUGUUU.CGC...ACCGA.G......C...U....U....C...A.AU....U....C..A..U.G.G...U...G...G..C..U...U...C....C.A.C.....C...U....U.C.C.C..G..C.G.....C..U...CG...GA.A--...--..----.-...--....-....-.-.-.--...-...-...-cagcaggagcggcuc.................................uaccguucggugaucg...-...-...-..-.-.-.....-.--...-....-....A..U.G..C.....C..G..C...A....G...G..-..U.G.......A..U..A.A.......G..C....C.....C.G...U....C.A.C.G...UUcC.GCA.C.GC...U.G...GAUA....UU.GGUG.G..C.GA.CA.A...G..GU
   NC_004578.1       CCUGUAU.CGC...ACCGA.A......G...U....G....C...C.GU....U....C..A..U.G.A...U...C...A..A..C...C...A....G.C.G.....U...U....U.C.C.C..G..A.G.....U..G...AA...AA.GGA...AC..AGCU.G...GC....G....A.U.C.UA...C...-...-c.............................................................gc...G...A...-..-.G.C.....A.AC...U....G....G..C.G..G.....C..C..U...U....C...C..A..U.C.......C..G..C.U.......G..C....C.....G.G...U...gA.C.C.A...UG.C.GCA.G.CC...U.G...GACA....UC.GGCG.G..C.GA.CA.A...G..UC
   NC_004603.1       UCUGUAC.CGU...ACUGA.A......U...U....C....C...U.AU....U....U..A..U.G.G...A...C...C..G..U...A...C....U.G.C.....G...C....U.A.C.C..A..A.C.....U..G...AA...GA.AGA...AC..AGUA.C...CA....A....G.C.G.UA...C...A...A...................................................................A...G...A..A.G.U.....U.GC...A....G....A..A.G..C.....A..A..U...G....A...A..C..G.G.......U..C..A.A.......G..C....U.....G.U...G....A.U.C.A...UC.C.GUA.C.UA...U.G...GAUA....UC.GGCG.G..C.GA.UA.A...A..GA
   NC_005126.1       UUUAUAC.CGU...ACAGA.A......U...U....U....C...U.GU....U....U..A..U.G.G...A...U...C..G..U...G...A....U.G.C.....A...C....U.G.C.C..A..A.C.....A..G...AA...GA.AGA...AC..AAUU.C...CA....A....G.C.U.UA...U...A...A...................................................................A...G...C..C.G.U.....G.GC...C....G....A..A.G..C.....A..A..U...A....G...G..C..A.G.......C..C..A.A.......G..C....G.....G.U...U....A.U.U.A...UA.C.GUA.C.GA...U.G...GAUA....UC.GGUG.G..U.GA.UA.A...A..AA
   NC_005966.1       UUUAUAU.CGU...AGUGA.A......A...U....C....C...C.GU....U....U..A..U.G.U...U...A...C..G..C...G...A....C.C.G.....C...U....U.U.C.C..U..G.G.....C..G...AA...GA.GGA...AC..AGCG.U...GC....C....A.U.G.U-...-...-...-auc..........................................................gcc...-...-...-..A.G.C.....A.AC...U....G....A..G.U..C.....A..C..U...U....U...G..C..C.A.......A..C..A.A......aC..C....U.....G.U...C....A.C.C.A...UG.C.GUA.C.CC...U.C...GAUA....UU.GGUG.C..C.GA.UA.A...A..GA
   NC_006055.1       AUUAUUC.CGU...UCAGA.A......U...U....C....U...U.AU....A....C..A..U.G.G...A...C...A..A..U...G...A....C.C.A.....C...U....U.C.C.C..A..A.C.....U..G...AA...GA.AGA...AC..AAUA.U...AU....A....G.C.U.UA...C...A...A................................................................acaA...G...U..U.A.U.....G.GA...U....G....C..A.A..U.....G..A..A...A....G...G..U..A.A.......A..U..U.A.......G..U....U.....G.U...U....A.-.-.-...UC.C.GUA.C.AU...U.A...GAUA....UC.GGUG.G..A.GA.UA.A...A..AA
   NC_006177.1       CCUCCUC.CGC...UCCGA.G......U...U....C....C...U.CU....U....C..A..U.G.G...G...G...C..G..U...U...C....C.A.C.....C...G....C.C.C.C..C..A.C.....G..G...AG...GA.GGA...GC..AGUA.U...CA....G....G.C.C.UA...-...-...-cgc..........................................................cga...G...G...C..U.-.C.....U.GC...G....G....A..AcG..C.....C..C..G...C....G...G..G..C.A.......G..C..G.G.......G..U....G.....-.-...-....A.U.C.A...UC.C.GCA.C.CC...U.G...GAUA....UC.GGCG.G..U.GA.CA.A...G..GA
   NC_006300.1       UUUAUAC.CGU...ACCGA.G......U...U....C....C...U.GU....U....C..A..U.G.G...A...U...C..G..U...G...A....C.C.A.....A...C....U.G.C.C..U..U.C.....A..G...AA...GA.AGA...AC..AAUU.U...AU....C....G.C.U.UA...U...A...A...................................................................A...G...A..A.G.U.....G.GU...A....G....A..A.G..Cg..auG..A..A...C....G...G..U..C.G.......C..C..A.G.......G..U....G.....G.U...A....-.-.-.U...UA.C.GUA.C.CA...U.G...GAUA....UU.GGUG.G..U.GA.UA.A...A..GA
   NC_006510.1       AUUGUAU.CGC...ACGGA.A......U...U....U....U...U.AU....A....C..A..U.G.G...G...A...C..GauC...G...G....A.G.-.....-...C....U.G.C.C..U..A.C.....G..G...AA...GA.CGA...AC..AGUU.U...GC....G....G.C.U.UA...C...A...A...................................................................A...A...C..G.G.U.....G.CU...U....G....A..A.C..Aa..auG..G..G...C....G...G..C..A.A.......G..-..-.-.......C..C....G.....G.U...C....G.U.C.G...UC.C.GGA.C.GC...U.U...GACA....UU.GGCG.G..C.GA.CA.A...A..GA
   NC_006513.1       CCUGUAC.CGC...ACCGA.G......U...U....C....C...U.GU....U....C..A..U.C.G...G...C...C..G..C...G...A....C.G.C.....G...C....U.G.C.C..C..G.A.....C..G...AG...GA.GGA...AC..AGUA.C...GA....A....G.C.C.UA...U...C...G...................................................................C...G...C..A.G.-.....U.GC...U....G....A..A.A..-.....U..C..G...A....U...G..C..C.C......gG..C..A.A.......G..C...cG.....G.U...G....A.C.G.A...UC.C.GCA.C.UU...U.C...GAUG....UC.GGC-.G..C.GG.AC.A...A..GG
   NC_007292.1       AUUAUAU.AGA...ACUGA.A......U...U....U....U...U.AU....U....U..A..U.G.A...A...U...C..G..U...A...A....U.U.C.....A...U....U.C.C.C..C..A.C.....A..G...AA...GA.AGA...AC..AAUU.U...AA....A....G.C.U.UA...U...A...A...................................................................A...A...A..U.G.C.....C.GC...U....G....A..A.U..C....cA..U..G...A....U...U..A..A.C.......G..A..-.A.......U..C....U.....G.U...A....G.U.C.A...UA.C.GUA.U.UA...U.G...GAUA....UU.GGGG.G..U.GA.UA.A...A..AA
   NC_007406.1       CCUGUUC.CGG...ACCGA.A......C...U....G....C...A.AU....U....C..A..U.G.C...U...C...G..G..A...C...A....G.A.G.....U...C....U.G.C.C..G..C.G.....C..G...CA...AG.CGA...GC..AGCU.U...GC....G....C.U.G.UA...C...C...G...................................................................C...A...A..G.G.U.....G.CU...G....G....A..C.G..C.....C..G..C...C....G...G..C..G.A.......C..-..A.A.......G..C....C.....G.G...U...gA.C.C.U...UC.C.GCA.C.CC...U.C...GAUA....UC.GGCG.G..C.GA.CA.A...G..GC
   NC_007510.1       GCUGUUC.CGU...UCCGA.G......U...U....C....C...U.GU....U....C..A..U.-.G...C...A...U..C..A...G...A....A.G.G.....A...G....A.U.G.C..C..G.G....aA..G...AG...GA.GGA...GC..AGUU.C...GC....C....G.C.G.UA...C...A...-agcggg....................................................cugucg...-...-...-..A.G.U.....G.GA...U....G....A..A.-..-.....-..-..G...G....G...C..A..U.G.......C..C..G.G.......U..G....A.....C.G...A....U.-.-.-...-C.C.GCA.C.GA...U.C...GACG....UC.GGC-.G..C.GG.AC.A...A..GC
   NC_007519.1       GCUGUUC.CGC...ACGGA.G......U...U....C....C...U.CU....U....U..C..U.C.G...A...C...A..G..G...C...C....UuC.C.....G...C....U.C.-.C..U..A.C.....A..G...AA...GA.CGA...AC..AGAC.G...GC....C....G.C.G.UA...U...A...C...................................................................U...G...A..A.G.C.....U.GC...U....C....A..G.G..Cu...cU..U..G...A....C...G..G..C.C.......G..G..-.-.......C..C....G.....G.U...U....A.U.U.A...UC.C.GCA.C.GC...U.G...GAUA....UC.GGGG.G..C.GA.CA.-...A..GC
   NC_007645.1       UCUGUAU.CGC...UCGGA.A......A...U....U....C...C.AU....U....U..A..U.G.G...U...G...C..A..C...G...A....G.U.C.....C...U....U.C.C.C..G..U.C.....G..G...AA...GA.AGA...GC..AGG-.-...--....-....-.-.-.--...-...-...-ugcagaucua............................................ucgcaaagug...-...-...-..-.-.-.....-.CU...G....G....A..A.G..C.....C..U..A...U....G...C..G..C.C.......G..A..G.Ac....ccG..U....G.....U.A...C....A.-.-.-...UG.C.GCA.C.CC...U.G...GAUA....UC.GGCG.G..C.GA.UA.A...A..AA
   NC_007712.1       CUUGUAU.CGC...ACCGA.G......U...U....U....C...U.GU....U....U..A..U.G.A...A...C...C..G..C...G...A....U.U.C.....C...C....U.G.C.C..G..G.G.....C..G...AA...GA.AGA...GC..AAUU.U...CA....G....G.C.U.UA...C...A...A...................................................................A...G...C..G.G.U.....G.GC...G....G....A..A.-..-.....U..C..C...A....U...G..C..C.C.......A..C..C.G.......GcuC....U.....A.U...U....A.U.C.G...UG.C.GCA.C.CA...U.G...GAUA....UC.GGCG.G..C.GA.CA.A...A..GA
   NC_007912.1       GUUGUAU.CGC...ACCGA.A......G...U....G....C...C.UU....U....U..A.uG.U.U...G...C...G..C..G...A...U....C.G.C.....U...U....U.C.C.C..A..G.U.....-..G...AG...GA.AGA...GC..AGC-.-...GC....U....U.G.G.UG...U...A...C...................................................................C..gC...G..A.G.C.....A.GC...U...aG....A..A.G..C.....G..U..U...U....G...C..G..C.C.......G..C..A.C.......C..C....A.....G.U...A....A.C.C.A...UG.C.GUA.C.AC...U.C...GAUG....UG.GGCG.G..U.GA.UA.A...A..UC
   NC_007963.1       GCUCUAU.CGC...ACCGA.G......G...U....G....C...C.GU....U....C..AugA.U.G...A...A...C..G..A...G...-....C.G.Cuu.ucC...C....A.G.C.G..A..G.C.....A..G...GA...GC.AGA...CG..----.-...--....-....-.-.-.--...-...-...-cggcuguacc............................................gcgaucagcu...-...-...-..-.-.-.....-.--...-....C....G..A.G..A.....G..C..U...U....C...G..C..G.C......cG..C..U.G.......C..C....G.....G.U...G....G.U.G.A...UG.C.GUA.C.GC...U.G...GAUA....UC.GGCG.G..U.GA.CA.A...G..GA
   NC_007964.1       CCUGUUU.CGG...ACCGA.G......U...U....G....C...A.AU....U....C..A..U.G.G...U...C...G..G..A...C...A....G.A.A.....C...C....U.G.C.C..G..C.G.....C..A...CG...AG.CGA...GC..AGCU.U...GC....G....C.U.G.UA...C...C...G...................................................................C...G...C..G.G.U.....-.GC...U....G...gA..C.G..C.....C..G..C...C....G...G..U..G.A.......-..C..A.A.......G..C....C.....G.G...U....G.A.C.U...UUcC.GCA.C.CC...U.C...GACA....UC.GGCG.G..C.GA.CA.A...G..GC
   NC_008010.2       CCUCUAC.CGC...ACCGA.G......U...U....C....C...U.GU....A....U..C..U.G.G...G...C...C..G..U...G...A....C.A.C.....C...U....U.G.C.C..G..A.G.....U..G...AG...GA.GGA...AC..AGUA.C...GG....C....G.C.C.UA...C...-...-...................................................................C...G...C..A.C.C....gU.GC...U....G....G..A.G..G.....G..G..A...U....G...G..C..G.G.......G..C..C.G......cC..C....G.....G.U...G....G.U.G.A...UC.C.GCA.C.GC...U.G...GACG....UG.GGCG.G..U.GA.CA.A...A..GC
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   NC_014118.1       UCUGUUG.CGU...UCCGA.G......U...U....C....C...U.GU....U....C..G..A.C.G...C...G...C..G..C...G...A....C.A.C.....C...G....C.G.C.C..A..A.C.....C..G...AA...GA.CGA...AC..AGGC.C...AC....U....G.A.A.UA...U...U...G...................................................................C...G...C..C.G.U.....C.GC...A....G....A..G.G..C.....G..C..U...C....G...G..C..-.C.......G..C..G.A.......G..C....G.....C.A...CgcugG.U.G.G...UA.C.GCA.C.GC...U.C...GACG....UC.GGCG.G..C.GA.CA.A...A..CC
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   NC_014217.1       CCUGUUC.CGC...ACCGA.A......U...U....G....C...A.GU....U....C..A..U.G.-...A...U...C..G..C...C...U....C.G.-.....-...-....-.G.C.C.uU..C.C.....C..G...CG...CA.CCA...AC..GAGC.A...GC....U....-.-.-.--...-...-...-caagcuc.................................................uaccgcuc...-...-...-..G.G.U.....G.CU...C....G....A..C.G..C.....G..G..C...G....G...G..C..G.A.......G..C..G.G.......C..C....G.....G.U...G....G.U.G.U...UC.C.GCA.C.CC...U.C...GACA....UC.GGCG.G..C.GA.CA.A...G..GU
   NC_014219.1       UCUGUAC.CGG...ACUGA.G......U...U....U....C...U.GU....A....C..A..U.G.G...G...C...C..G..U...G...A....U.G.A.....A...C....U.G.C.C..G..A.C.....G..G...AG...GA.AGA...AC..AGUU.U...GA....G....G.C.U.UA...U...A...A...................................................................G...A...A..A.G.U.....U.GU...C....G....A..A.G..A.....G..A..U...G....G...G..U..G.A.......G..C..A.C.......C..C....G.....G.U...U....G.U.G.A...UC.C.GUA.C.UC...U.U...GACA....UC.GGAG.G..G.GA.UA.A...A..GA
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   NC_014363.1       CCUGUUC.CGC...UCCGA.G......U...U....C....C...U.CU....U....C..A..U.G.G...A...C...G..C..C...A...C....C.G.A.....G...C....U.C.C.C..C..U.C.....C..G...AG...GA.CGA...GC..AGUU.C...GC....G....G.C.A.UA...C...-...-ca...........................................................gaa...G...G...U..C.G.C.....-.GC...U....G....C..G.C..C.....U..G..A...A....G...G..G..C.C.......A..G..C.C.......G..-....-.....G.U...C....A.U.C.A...UC.C.GCA.C.GC...U.C...GACG....UG.GGUG.G..C.GA.CA.A...G..GA
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   NC_014376.1       ACUGUUU.CGU...ACGGA.A......U...U....U....U...U.AU....U....C..A..U.G.G...A...C...C..G..U...A...C....G.U.C.....A...A....U.G.C.C..U..A.C.....C..G...AG...GA.CGA...GC..AGUU.U...GA....A....G.C.C.UA...UcagA...A...................................................................A...G...U..U.G.C.....A.GU...U....G....C..C.A..U.....G..A..A...C....G...G..C..A.A.......G..C..-.-.......-..C....U.....G.U...G....A.U.C.A...UC.C.GCA.C.CC...U.G...GAUA....UC.GGCG.G..G.GA.UA.A...G..GA
   NC_014387.1       UCUUUUC.CGU...UCAGA.A......U...U....C....C...U.GU....U....C..A..U.G.G...A...U...A..G..C...G...G....A.C.A.....U...C....U.U.C.C..A..A.C.....A..G...AG...GA.AGA...AC..AGUU.U...AA....C....G.C.U.UA...C...A...A...................................................................G...G...A..A.G.C.....U.GC...U....G....U..A.A..C.....A..A..U...-....G...G..A..U.G.......G..C..A.A.......G.cC....U.....G.U...U....A.U.C.A...UC.A.GAA.C.UC...U.U...GAUA....UC.GGUG.G..C.GA.CA.A...A..GA
   NC_014500.1       CCUGUAU.CGC...ACCGA.A......U...U....C....C...U.GU....U....C..A..U.G.G...A...U...C..G..C...G...A....U.G.C.....C...C....U.G.C.C..G..A.C.....C..G...AA...GA.AGA...GC..AGUU.C...CA....G....G.C.C.UA...C...A...A...................................................................A...G...C..C.G.U.....C.GC...G....G....A..A.G..C.....G..G..U...G....G...G..C..G.A.......G..C..A.G.......G..C....G.....G.U...G....A.U.C.G...UG.C.GCA.C.CA...U.G...GACA....UC.GGCG.G..C.GA.CA.A...A..GA
   NC_014532.2       CCUGAUG.CGC...AGUGA.G......U...U....C....C...U.GU....U....C..C..U.G.G...G...C...C..G..C...G...A....U.A.C.....C...G....C.G.C.C..C..G.A.....C..G...AG...GC.GGA...G-..----.-...--....-....-.-.-.--...-...-...-cagugccacgaguacca..............................gaccagccugacggcgc...-...-...-..-.-.-.....-.--...-....-....-..-.-..-.....-..-..U...C....G...G..C..-.G.......G..C..A.A.......G.cC....G.....G.U...G....A.U.C.A...UU.C.GUA.C.CC...U.G...GAUA....UC.GGUG.C..C.GA.CA.A...G..CA
   NC_014624.2       CCUGUAC.CGU...ACGGA.G......U...U....C....U...U.AU....A....U..A..U.G.A...A...C...A..G..C...G...A....C.A.C.....C...A....U.G.C.C..G..G.A.....U..G...AA...GA.AAA...AC..AGUA.C...GA....G....G.C.U.UA...C...A...A...................................................................G...G...C..U.G.U.....G.AU...C....G....A..A.U..C.....C..U..U...U....G...A..C..G.G.......C..G..A.U.......C..C....G.....G.U...U....A.U.C.A...UC.C.GCA.C.AC...U.G...GAUA....UC.GGCG.G..G.GA.CA.A...A..AA
   NC_014632.1       ACUUUAC.AGA...ACUGA.A......U...U....U....C...U.UU....U....C..A..U.G.A...A...U...A..A..C...G...A....U.A.G.....A...U....U.U.C.C..U..A.C.....U..G...AG...GA.UGA...AC..AGUU.U...GA....A....G.C.A.UA...U...A...A...................................................................A...A...C..U.G.U.....U.GU...A....G....A..A.U..C.....A..C..U...U....G...A..A..G.G.......-..U..A.A.......G.cC....U.....G.U...A....A.C.A.A...UC.A.GAA.C.UA...U.G...GAUA....UU.GGCG.G..A.GA.UA.A...G..GC
   NC_014652.1       GCUUUUC.AGA...ACAGA.G......U...U....U....U...U.GU....U....C..A..U.G.G...A...U...A..G..-...-...A....A.G.Cc...aG...C....C.A.C.C..A..U.C.....A..G...AA...GA.UGA...AC..AGUU.U...GA....A....G.U.U.UA...U...A...A...................................................................A...A...C..U.G.U.....A.CU...U....G....A..A.A..A.....G..A..U...-....G...G..A..A.G.......G..C..A.A......gC..C....G.....G.U...U....A.U.U.A...UA.A.GAA.C.UU...U.G...GAUG....UC.GGGG.G..A.GA.CA.-...A..GA
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   NC_014720.1       GCUUUUC.AGA...ACAGA.G......U...U....U....U...U.GU....U....C..A..U.G.G...A...U...A..G..-...-...A....A.G.Cc...aG...C....C.A.C.C..A..U.C.....A..G...AA...GA.UGA...AC..AGUU.U...GA....A....G.U.U.UA...U...A...A...................................................................A...A...C..U.G.U.....A.CU...U....G....A..A.A..A.....G..A..U...-....G...G..A..A.G.......G..C..A.A......gC..C....G.....G.U...U....A.U.U.A...UA.A.GAA.C.UU...U.G...GAUG....UU.GGGG.G..A.GA.CA.-...A..GA
   NC_014721.1       GCU---U.UUCagaACAGA.G......U...U....U....U...U.GU....U....C..A..U.G.G...A...C...A..G..A...A...G....C.C.A.....G...C....C.A.C.C..A..U.C.....A..G...AA...GA.UGA...AC..AGUU.U...GA....A....G.U.U.UA...U...A...A...................................................................A...A...C..U.G.U.....A.CU...U....G....A..A.A..A.....G..A..U...G....G...A..A..G.A.......C..A..A.G.......C..C....G.....G.U...U....A.U.U.A...UA.A.GAA.C.UU...U.G...GAUG....UU.GGAG.G..A.GA.UA.A...A..AA
   NC_014817.1       CCUGUUC.CGC...ACCGA.G......U...U....U....C...A.GU....U....C..A..U.G.G...U...C...U..C..C...G...A....A.G.A.....C...C....U.G.C.CgcG..C.C.....U..G...AA...GC.G--...-U..CAGA.C...CG....A....G.C.U.UU...A...U...G...................................................................A...G...C..G.C.G.....UgAU...G....G....A..C.G..C.....G..G..C...G....G...G..C..G.A.......-..C..A.A.......G..C...cG.....G.U...C....A.U.C.U...UC.C.GCA.C.AC...U.C...GACC....UC.GGCG.G..U.GA.C-.A...A..GA
   NC_014828.1       CCUGAUG.CGC...ACCGA.G......C...U....G....C...U.UU....U....C..C..U.C.U...C...G...G..G..A...G...A....C.G.C.....C...G....C.G.C.C..G..A.C.....C..G...AG...GA.AGA...AC..AGUU.C...GC....G....G.-.-.--...-...-...-aauacaagaaga.......................................ucgccgagacguu...-...-...C..G.C.G.....G.GC...U....-....C..C.G..A.....G..C..C...C....G...G..C..-.-.......-..-..-.-.......G..A....C.....G.U...C....A.U.C.A...UC.C.GCA.C.GC...U.G...GACA....UC.GGCG.G..C.GA.UA.A...A..GA
   NC_014829.1       GCUUUAC.CGU...ACUGA.A......U...U....C....C...U.AU....A....U..A..U.G.G...G...A...A..G..A...G...A....U.C.A.....A...U....U.A.C.C..U..A.C.....A..G...AA...GA.AGA...AC..AGUU.-...--....-....-.-.-.--...-...-...-ccaggcaua..............................................uaaaagugu...-...-...-..-.-.-.....C.GC...U....G....A..A.G..C.....A..-..A...U....G...G..A..U.G.......G..A.aA.A.......C..C....U.....G.U...C....G.U.U.A...UC.C.GUA.C.UU...U.A...GAUA....UU.GGUG.G..A.GA.CA.A...A..GA
   NC_014909.2       AUUAUAU.AGA...ACUGA.A......U...U....U....U...U.AU....U....U..A..U.G.A...A...U...C..G..U...A...A....U.G.A.....A...U....U.A.C.C..U..A.C.....C..G...AA...GA.GGA...AC..AAUU.U...CA....A....G.C.U.UA...U...A...A...................................................................A...A...A..U.G.C.....A.GC...U....G....A..A.U..-.....A..U..A...U....G...U..C..U.A.......A..U.aA.A.......U..C....U.....A.U...C....A.U.C.A...UA.C.GAA.U.UA...U.G...GAUA....UU.GGAG.G..A.GA.UA.A...A..AA
   NC_014921.1       GUUAUUC.CGU...UCAGA.A......U...U....C....U...U.AU....A....C..A..U.G.G...A...U...A..A..U...G...A....A.C.A.....C...U....G.A.C.C..A..A.C.....A..G...AA...GA.AGA...AC..AAUU.U...GC....U....G.C.U.UA...U...A...A...................................................................A...G...A..A.G.U.....A.GU...U....G....A..A.A..Ga..auG..A..A...A....G...G..U..A.A.......A..A..G.A.......G..U....U.....G.U...U....A.-.-.-...UU.A.GAA.C.AC...U.A...GAUA....UU.GGUG.G..U.GA.UA.A...A..AC
   NC_014958.1       CCUGUAC.CGC...ACGGA.A......U...U....C....C...U.GU....U....C..A..U.G.G...G...C...G..A..G...G...C....G.C.A.....A...C....U.G.C.C..G..G.A.....C..G...AA...GC.GCA...GC..AGAU.G...GC....C....G.C.G.UA...C...C...G...................................................................C...G...C..G.G.U.....C.CU...C....G....A..C.G..C.....G..C..U...C....G...C..C..C.C.......C..C..G.G.......C..C....C.....G.U...G....G.U.G.A...UC.C.GCA.C.CC...U.C...GACG....UC.GGCG.G..C.GA.CA.A...G..GC
   NC_015138.1       CCUGAUG.CGC...ACCGA.G......U...U....C....C...U.CU....U....C..C..U.G.G...A...G...C..G..C...G...A....C.A.C.....C...G....U.G.C.C..G..G.A.....C..G...AG...GA.GGC...G-..----.-...--....-....-.-.-.--...-...-...-caguaccaggccuaccgcg.........................gcauggucgaggcgcugcag...-...-...-..-.-.-.....-.--...-....-....-..-.-..-.....-..-..-...-....G...G..C..C.G.......G..-..-.-.......C..C....G.....C.U...C....G.U.G.G...UG.C.GCA.C.GC...U.G...GAUA....UC.GGCG.G..C.GA.CA.A...G..CG
   NC_015152.1       UCUGUUC.CGU...UCUGA.G......U...U....C....C...U.GU....U....U..A..U.G.G...A...G...U..C..U...U...U....G.G.A.....A...A....A.U.C.C..G..U.C.....A..G...AA...GA.ACG...GC..AGUU.U...GA....G....G.C.U.UA...C...A...-...................................................................A...G...C..AgG.U.....C.AU...U....G....A..A.G..C.....U..A..U...-....G...G..C..A.C.......C..C..A.A.......A..C...cG.....G.U...A....A.C.C.A...UC.C.GAA.C.CA...U.C...GAUA....UC.GGUG.G..G.GA.CA.A...G..GU
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   NZ_LT853882.1     CCUGAUG.CGU...ACCGA.G......U...U....C....C...U.GU....U....C..U..U.G.G...A...A...A..G.cG...G...G....A.G.C.....A...C....-.G.C.C..C..A.C.....C..G...AA...GA.CGA...GC..AGU-.-...--....-....-.-.-.--...-...-...-acaaaaccuaccugg..................................cgauggcgcaggcgc...-...-...-..-.-.-.....-.U-...-....-....-..-.-..-.....G..G..A...U....G...G..C..C.G.......G..C..C.A.......C..-....-.....-.U...G....A.U.U.G...UG.C.GUG.C.GC...U.G...GACA....UC.GGCG.G..C.GA.CA.A...G..CA
   NZ_LT855380.1     GCUGUAU.CGC...ACCGA.A......G...U....G....C...C.GU....U....C..A..U.G.A...U...C...A..A..C...C...A....G.C.G.....C...U....U.C.C.C..G..A.G.....C..G...AA...AA.GGA...AC..AGCU.G...GC....A....A.U.C.UA...C...C...-g..............................................................c...G...A...-..-.G.C.....A.GC...U....G....G..C.G..G.....C..U..U...U....C...C..A..U.C.......C..G..C.U.......G..C....C.....G.G...U...gA.C.C.A...UG.C.GCA.G.CC...U.G...GACA....UU.GGUG.G..C.GA.CA.A...G..GC
   NZ_LT897836.1     AUUAUAU.CGU...ACCGA.G......U...U....U....U...U.GU....U....U..A..U.G.G...A...C...C..G..U...G...A....U.U.C.....A...U....U.A.C.C..C..A.G.....C..G...AA...GA.AGA...AC..AGUU.C...CA....G....G.C.G.UA...C...A...A...................................................................A...G...C..G.G.U.....G.GC...A....G....A..A.U..C....aA..U..G...C....C...A..U..A.C.......-..A..G.A.......U..C....G.....A.U...U....A.U.U.G...UG.C.GCA.C.GA...U.G...GAUA....UC.GGGG.G..A.GA.UA.A...A..GA
   NZ_LT906439.1     UCUCUAC.CGC...ACCGA.G......U...U....C....C...U.CU....A....U..A..U.G.G...A...U...U..C..G...C...A....A.G.A.....U...U....U.C.C.C..A..A.C.....A..G...AA...GA.CGA...AC..AAUA.C...GA....A....G.C.C.UA...U...A...A...................................................................G...G...C..A.G.U.....U.CU...A....G....A..A.G..-.....G..U..A...U....G...A..A..U.G.......G..C.aA.A.......C..C....A.....G.U...G....G.U.C.G...UU.C.GUA.C.CA...U.G...GAUA....UC.GGUG.G..C.GA.CA.A...A..GA
   NZ_LT906444.1     ACUUUAU.CGU...ACAGA.A......U...U....C....U...U.GU....A....C..A..U.G.G...G...U...C..G..U...G...A....C.A.A.....U...U....U.C.C.C..A..A.C.....A..G...AA...GA.AGA...GC..AAUU.C...GA....A....G.C.G.UA...U...A...A...................................................................A...G...C..A.G.U.....A.GU...U....U....C..C.G..G.....-..A..A...U....G...G..A..C.G......gA..A..A.A.......U..C....U.....G.U...G....G.U.C.G...UU.C.GUA.C.UU...U.A...GAUA....UC.GGUG.G..C.GA.UA.A...A..AC
   NZ_LT906445.1     UUUGUAC.CGU...ACAGA.A......U...U....C....C...U.UU....A....C..A..U.G.G...A...A...A..A..C...G...A....U.G.A.....A...U....U.A.C.C..U..G.C.....A..G...AA...GA.UGU...AC..----.-...--....-....-.-.-.--...-...-...-aauuugaagaguau...................................aaaaagguagcccaa...-...-...-..-.-.-.....-.--...-....G....A..G.A..U.....G..A..A...A....G...G..G..C.A.......A..C..C.G.......G..-....-.....-.U...U....A.U.C.A...UC.C.GUA.C.CA...U.G...GAUA....UC.GGUG.G..C.GA.CA.A...G..GA
   NZ_LT906446.1     UCUGUUC.CGU...UCUGA.A......U...U....C....U...U.AU....U....C..A..U.G.G...G...U...A..G..A...G...A....U.A.C.....U...A....U.U.C.C..U..G.A.....U..G...AA...GA.AAC...UC..AAUU.U...AA....A....G.C.A.UA...U...A...A...................................................................A...G...A..A.G.C.....U.AU...U....G....A..A.A..A.....A..U..G...C....-...A..A..U.G.......G..U..A.A.......U..U....U.....A.U..gU....G.U.U.A...UU.C.GUA.C.UA...U.G...GAUA....UC.GGCG.G..C.GA.UA.A...A..CC
   NZ_LT906447.1     UUUAUAC.AGA...ACUGA.A......U...U....C....U...U.AU....A....C..A..U.G.G...G...C...A..G..A...G...A....C.C.A.....A...A....U.G.C.C..G..A.C.....U..G...AA...GA.AGA...AC..AGUU.C...GA....A....G.C.C.UA...U...A...A...................................................................A...A...C..A.G.U.....A.UU...A....G....A..A.U..Cc..auG..G..A...A....G...G..C..A.A.......-..-..-.A.......C..G....U.....G.U...A....G.U.A.G...UA.C.GUA.C.UU...U.A...GAUA....UU.GGCG.G..C.GA.CA.A...A..GA
   NZ_LT906448.1     CUUAUAC.CGU...ACUGA.A......U...U....C....C...U.CU....U....U..A..U.G.G...A...U...C..G..U...G...A....-.G.C....aA...C....U.U.C.C..A..A.C.....G..G...AA...GA.AGA...AC..AGUU.U...AU....U....G.C.U.UA...U...A...A...................................................................A...G...A..A.G.U.....U.GU...U....G....A..A.G..Ca..auG..A..A...U....G...G..-..U.C.......G..C..-.-.......U..U....A.....G.U...A....G.U.A.U...UA.C.GUA.C.AA...U.G...GAUA....UU.GGUG.G..U.GA.UA.A...A..GA
   NZ_LT906460.1     UUUAUAU.AGA...ACUGA.G......U...U....C....U...U.AU....A....U..A..U.G.G...G...U...A..G..A...G...A....C.C.A.....A...A....U.G.C.C..A..A.C.....U..G...AA...GA.GGA...AC..AAUU.U...GA....A....G.C.C.UA...U...A...A...................................................................A...G...A..A.G.U.....A.CU...U....G....A..A.G..C.....A..A..U...G....A...A..C..G.G.......U..A..A.A.......C..G....U.....G.U...U....G.U.U.G...UG.C.GUA.C.UU...U.G...GAUA....UA.GGUG.G..A.GA.UA.A...A..GA
   NZ_LT906463.1     CCUCUAU.CGU...ACGGA.A......U...U....C....C...U.AU....U....U..A..U.G.G...A...U...C..G..U...G...A....U.C.A.....G...U....U.A.C.C..G..A.G.....C..G...AA...GA.AGA...AC..AGUU.U...AU....U....G.C.U.UA...C...A...A...................................................................A...G...A..A.G.U.....G.GU...A....G....A..G.G..Caa.ug-..-..-a.aU....G...G..U..C.G.......U..U..U.G.......G..U....G.....-.-...-....G.U.A.U...UG.C.GUA.C.CA...U.G...GAUA....UC.GGUG.G..A.GA.CA.A...G..GA
   NZ_LT906464.1     CCUAUAC.CGU...ACAGA.A......U...U....C....U...U.GU....A....C..A..U.G.G...G...U...C..G..U...G...A....C.A.A.....C...A....U.G.C.C..A..U.C.....A..G...AA...GA.UGA...AC..AAUU.C...GA....A....G.C.A.UA...C...A...A................................................................aaaG...G...U..A.U.U.....A.GA...A....G....A..A.A..U.....-..-..-...-....G...G..A..U.G.......G..U..A.A.......G..C....G....uG.U...C....G.U.U.G...UU.C.GUA.C.GC...U.U...GAUA....UC.GGUG.G..A.GA.UA.A...A..GA
   NZ_LT906470.1     CCUAUAU.AGA...ACGGA.A......U...U....C....C...U.GU....A....C..A..U.G.G...A...A...A..A..C...G...A....U.G.A.....A...U....U.G.C.C..G..A.C.....A..G...AA...GA.CGC...GC..A---.-...--....-....-.-.-.--...-...-...-auuugaagaauauaaa................................aaaguagcucaggaua...-...-...-..-.-.-.....-.--...U....G....A..A.G..-.....-..-..-...-....G...G..A..C.A.......G..C..C.U.......G..-....-.....-.U...U....A.U.C.A...UU.C.GCA.C.CA...U.G...GAUA....UC.GGCG.G..C.GA.CA.A...G..GA
   NZ_LT906479.1     CCUGUAU.CGU...ACCGA.A......U...U....C....C...U.GU....U....C..A..U.G.G...A...C...C..G..C...G...A....C.U.C.....G...C....U.G.C.C..G..A.C.....C..G...AA...GA.CGA...GC..AGUU.C...CA....G....G.C.U.UA...C...A...A...................................................................A...G...C..C.G.U.....U.GC...G....G....A..A.G..C.....C..A..U...G....G...G..C..U.C.......G..C..A.G.......G..C....C.....G.U...G....A.U.C.G...UC.C.GUA.C.CA...U.G...GACA....UC.GGCG.G..C.GA.CA.A...A..GA
   NZ_LT985188.1     GCUGUUC.CGG...UCCGA.A......U...U....C....C...U.GU....U....U..C..U.C.G...A...U...C..G..C...G...A....C.A.C.....C...G....C.G.C.C..G..A.C.....C..G...UC...GA.CGA...GC..AGAC.C...GC....C....A.C.C.UA...C...A...C...................................................................C...G...A..G.G.U.....G.CU...C....A....A..G.G..C.....G..U..U...C....G...G..CgaU.C.......G..C..A.A.......-..-....G.....G.U...C....G.U.U.G...UA.C.GUA.C.CC...U.C...GACG....CC.GGGG.C..C.GA.CA.A...G..CC
   NZ_OU015521.1     AUUAUAC.CGU...ACUGA.A......A...U....G....A...C.UU....U....U..A..U.G.A...U...C...C..G..A...G...A....U.C.G.....A...U....U.U.C.C..C..A.G.....U..G...AA...GA.AGA...AC..AGCG.U...AU....U....A.U.G.UA...U...C...-...................................................................G...A...C..A.A.C.....U.AC...U....A....A..A.U..A.....C..G..U...U....U...G..C..U.C......cU..C..G.A.......C..C....G.....G.U...C....A.U.U.A...UG.C.GUA.C.AU...U.A...GAUA....UU.GGGG.G..U.GA.UA.A...A..AU
   NZ_OU594967.1     CCUAUAC.CGG...ACAGA.G......U...U....C....U...U.AU....U....C..A..U.G.G...A...C...C..G..U...G...A....G.A.G.....U...C....U.G.C.C..A..A.C.....U..G...AA...GA.UGA...AC..AGUU.C...CA....G....G.C.C.UA...U...A...A...................................................................A...G...A..U.G.U.....C.GC...U....G....A..A.-..A.....G..U..A...U....G...C..C..U.A.......A..U.cA.C.......C..C....A.....A.U...C....A.U.U.A...UU.C.GUA.C.GA...U.G...GAUA....UU.GGUG.G..U.GA.UA.A...A..GA
   NZ_OU907312.1     UCUCUAC.CGU...ACCGA.A......U...U....U....C...U.CU....U....C..A..U.G.G...G...A...C..G..A...G...A....G.G.G.....U...C....U.C.C.C..C..U.C.....C..G...AA...GC.AGA...G-..----.-...--....-....-.-.-.--...-...-...-caauuccaggccuaucaa...........................gccguagcacaacaacugc...-...-...-..-.-.-.....-.--...-....-....-..G.A..U.....C..A..G...-....G...G..G..A.G.......-..-..-.-.......G..C....G.....G.C...G....G.U.G.A...UC.C.GCA.C.CG...U.C...GAUA....UU.GGGG.G..U.GA.UA.A...A..CC


   Structure         (((...(.(((....((((..........................(.((....(....(..(..(.(.(...(...(...(..(..(..............(.(................(.(.(..(..(.(...........................(..((((.....((....(....(.(.(..................................................................................)...)...)..).).).....).))...)....)..................)..)..)........)...)..)............)..)............)..)....).....).)...........................).))...).)...))))....)).))...)..).))........)..))


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ptsH-ptsI-crr



Position: 1452-1571, Conformation: #1







97% 90% 75% 50% Nucleotide present N N N Nucleotide identify E < 0.1 Base-pair covariation E < 0.05 Helix-level covariation 97% 90% 75%

Y U R U Y C G Y A C G A R U U Y Y U R U Y A U G G R Y R R R Y U C C R G A R G A G A R C A R Y Y Y U A Y Y G R R G R R Y R U R Y Y R U C G A C U G A Y A U Y G G Y G G G A Y A A R R 5'