pdhR-aceE-aceF-lpd



Position: 6306-6470, Conformation: #0







DMS reactivity > 1.0 0.0 0.4 0.7 G/U/No data
Position: 0 (position.label in template: 0.5')5' Position: 1 (position.label in template: 1.A) Reactivity: nanA Position: 2 (position.label in template: 2.C) Reactivity: nanC Position: 3 (position.label in template: 3.U) Reactivity: nanU Position: 4 (position.label in template: 4.U) Reactivity: nanU Position: 5 (position.label in template: 5.C) Reactivity: nanC Position: 6 (position.label in template: 6.G) Reactivity: nanG Position: 7 (position.label in template: 7.A) Reactivity: nanA Position: 8 (position.label in template: 8.C) Reactivity: nanC Position: 9 (position.label in template: 9.A) Reactivity: nanA Position: 10 (position.label in template: 10.A) Reactivity: nanA Position: 11 (position.label in template: 11.C) Reactivity: nanC Position: 12 (position.label in template: 12.G) Reactivity: nanG Position: 13 (position.label in template: 13.C) Reactivity: nanC Position: 14 (position.label in template: 14.G) Reactivity: nanG Position: 15 (position.label in template: 15.A) Reactivity: nanA Position: 16 (position.label in template: 16.U) Reactivity: nanU Position: 17 (position.label in template: 17.C) Reactivity: nanC Position: 18 (position.label in template: 18.A) Reactivity: nanA Position: 19 (position.label in template: 19.U) Reactivity: nanU Position: 20 (position.label in template: 20.U) Reactivity: nanU Position: 21 (position.label in template: 21.G) Reactivity: nanG Position: 22 (position.label in template: 22.C) Reactivity: nanC Position: 23 (position.label in template: 23.A) Reactivity: nanA Position: 24 (position.label in template: 24.G) Reactivity: nanG Position: 25 (position.label in template: 25.C) Reactivity: nanC Position: 26 (position.label in template: 26.G) Reactivity: nanG Position: 27 (position.label in template: 27.G) Reactivity: nanG Position: 28 (position.label in template: 28.G) Reactivity: nanG Position: 29 (position.label in template: 29.U) Reactivity: nanU Position: 30 (position.label in template: 30.U) Reactivity: nanU Position: 31 (position.label in template: 31.C) Reactivity: nanC Position: 32 (position.label in template: 32.U) Reactivity: nanU Position: 33 (position.label in template: 33.C) Reactivity: nanC Position: 34 (position.label in template: 34.G) Reactivity: nanG Position: 35 (position.label in template: 35.C) Reactivity: nanC Position: 36 (position.label in template: 36.C) Reactivity: nanC Position: 37 (position.label in template: 37.C) Reactivity: nanC Position: 38 (position.label in template: 38.G) Reactivity: nanG Position: 39 (position.label in template: 39.A) Reactivity: 0A Position: 40 (position.label in template: 40.U) Reactivity: nanU Position: 41 (position.label in template: 41.C) Reactivity: 1C Position: 42 (position.label in template: 42.C) Reactivity: 0.5C Position: 43 (position.label in template: 43.A) Reactivity: 0A Position: 44 (position.label in template: 44.A) Reactivity: 0A Position: 45 (position.label in template: 45.C) Reactivity: 1C Position: 46 (position.label in template: 46.U) Reactivity: nanU Position: 47 (position.label in template: 47.G) Reactivity: nanG Position: 48 (position.label in template: 48.C) Reactivity: 0C Position: 49 (position.label in template: 49.C) Reactivity: 1C Position: 50 (position.label in template: 50.G) Reactivity: nanG Position: 51 (position.label in template: 51.U) Reactivity: nanU Position: 52 (position.label in template: 52.U) Reactivity: nanU Position: 53 (position.label in template: 53.U) Reactivity: nanU Position: 54 (position.label in template: 54.A) Reactivity: 1A Position: 55 (position.label in template: 55.U) Reactivity: nanU Position: 56 (position.label in template: 56.U) Reactivity: nanU Position: 57 (position.label in template: 57.C) Reactivity: 0C Position: 58 (position.label in template: 58.C) Reactivity: 0C Position: 59 (position.label in template: 59.G) Reactivity: nanG Position: 60 (position.label in template: 60.C) Reactivity: 1C Position: 61 (position.label in template: 61.A) Reactivity: 0.5A Position: 62 (position.label in template: 62.U) Reactivity: nanU Position: 63 (position.label in template: 63.G) Reactivity: nanG Position: 64 (position.label in template: 64.A) Reactivity: 1A Position: 65 (position.label in template: 65.A) Reactivity: 0.5A Position: 66 (position.label in template: 66.G) Reactivity: nanG Position: 67 (position.label in template: 67.A) Reactivity: 0.5A Position: 68 (position.label in template: 68.U) Reactivity: nanU Position: 69 (position.label in template: 69.C) Reactivity: 0C Position: 70 (position.label in template: 70.C) Reactivity: 0C Position: 71 (position.label in template: 71.G) Reactivity: nanG Position: 72 (position.label in template: 72.C) Reactivity: 0C Position: 73 (position.label in template: 73.G) Reactivity: nanG Position: 74 (position.label in template: 74.U) Reactivity: nanU Position: 75 (position.label in template: 75.A) Reactivity: 0.5A Position: 76 (position.label in template: 76.U) Reactivity: nanU Position: 77 (position.label in template: 77.C) Reactivity: 0.5C Position: 78 (position.label in template: 78.U) Reactivity: nanU Position: 79 (position.label in template: 79.G) Reactivity: nanG Position: 80 (position.label in template: 80.G) Reactivity: nanG Position: 81 (position.label in template: 81.G) Reactivity: nanG Position: 82 (position.label in template: 82.A) Reactivity: 1A Position: 83 (position.label in template: 83.C) Reactivity: 0.5C Position: 84 (position.label in template: 84.U) Reactivity: nanU Position: 85 (position.label in template: 85.C) Reactivity: 0C Position: 86 (position.label in template: 86.C) Reactivity: 0C Position: 87 (position.label in template: 87.A) Reactivity: 0.5A Position: 88 (position.label in template: 88.C) Reactivity: 0.5C Position: 89 (position.label in template: 89.U) Reactivity: nanU Position: 90 (position.label in template: 90.G) Reactivity: nanG Position: 91 (position.label in template: 91.A) Reactivity: 0A Position: 92 (position.label in template: 92.C) Reactivity: 0C Position: 93 (position.label in template: 93.G) Reactivity: nanG Position: 94 (position.label in template: 94.C) Reactivity: 1C Position: 95 (position.label in template: 95.G) Reactivity: nanG Position: 96 (position.label in template: 96.C) Reactivity: 0C Position: 97 (position.label in template: 97.U) Reactivity: nanU Position: 98 (position.label in template: 98.G) Reactivity: nanG Position: 99 (position.label in template: 99.G) Reactivity: nanG Position: 100 (position.label in template: 100.A) Reactivity: 1A Position: 101 (position.label in template: 101.A) Reactivity: 0A Position: 102 (position.label in template: 102.C) Reactivity: 0C Position: 103 (position.label in template: 103.U) Reactivity: nanU Position: 104 (position.label in template: 104.G) Reactivity: nanG Position: 105 (position.label in template: 105.A) Reactivity: 1A Position: 106 (position.label in template: 106.A) Reactivity: 0.5A Position: 107 (position.label in template: 107.A) Reactivity: 1A Position: 108 (position.label in template: 108.G) Reactivity: nanG Position: 109 (position.label in template: 109.A) Reactivity: 1A Position: 110 (position.label in template: 110.A) Reactivity: 0A Position: 111 (position.label in template: 111.G) Reactivity: nanG Position: 112 (position.label in template: 112.U) Reactivity: nanU Position: 113 (position.label in template: 113.A) Reactivity: 1A Position: 114 (position.label in template: 114.C) Reactivity: 0C Position: 115 (position.label in template: 115.C) Reactivity: 0C Position: 116 (position.label in template: 116.A) Reactivity: 0A Position: 117 (position.label in template: 117.G) Reactivity: nanG Position: 118 (position.label in template: 118.A) Reactivity: 1A Position: 119 (position.label in template: 119.A) Reactivity: 0.5A Position: 120 (position.label in template: 120.C) Reactivity: 0C Position: 121 (position.label in template: 121.G) Reactivity: nanG Position: 122 (position.label in template: 122.C) Reactivity: 0C Position: 123 (position.label in template: 123.C) Reactivity: 0C Position: 124 (position.label in template: 124.U) Reactivity: nanU Position: 125 (position.label in template: 125.G) Reactivity: nanG Position: 126 (position.label in template: 126.C) Reactivity: 0.5C Position: 127 (position.label in template: 127.U) Reactivity: nanU Position: 128 (position.label in template: 128.G) Reactivity: nanG Position: 129 (position.label in template: 129.G) Reactivity: nanG Position: 130 (position.label in template: 130.U) Reactivity: nanU Position: 131 (position.label in template: 131.A) Reactivity: 0.5A Position: 132 (position.label in template: 132.A) Reactivity: 1A Position: 133 (position.label in template: 133.U) Reactivity: nanU Position: 134 (position.label in template: 134.G) Reactivity: nanG Position: 135 (position.label in template: 135.G) Reactivity: nanG Position: 136 (position.label in template: 136.G) Reactivity: nanG Position: 137 (position.label in template: 137.U) Reactivity: nanU Position: 138 (position.label in template: 138.G) Reactivity: nanG Position: 139 (position.label in template: 139.G) Reactivity: nanG Position: 140 (position.label in template: 140.C) Reactivity: 0C Position: 141 (position.label in template: 141.G) Reactivity: nanG Position: 142 (position.label in template: 142.G) Reactivity: nanG Position: 143 (position.label in template: 143.U) Reactivity: nanU Position: 144 (position.label in template: 144.A) Reactivity: 0.5A Position: 145 (position.label in template: 145.U) Reactivity: nanU Position: 146 (position.label in template: 146.C) Reactivity: 0C Position: 147 (position.label in template: 147.A) Reactivity: 0A Position: 148 (position.label in template: 148.U) Reactivity: nanU Position: 149 (position.label in template: 149.C) Reactivity: 0.5C Position: 150 (position.label in template: 150.G) Reactivity: nanG Position: 151 (position.label in template: 151.G) Reactivity: nanG Position: 152 (position.label in template: 152.U) Reactivity: nanU Position: 153 (position.label in template: 153.C) Reactivity: 1C Position: 154 (position.label in template: 154.U) Reactivity: nanU Position: 155 (position.label in template: 155.G) Reactivity: nanG Position: 156 (position.label in template: 156.G) Reactivity: nanG Position: 157 (position.label in template: 157.A) Reactivity: 0A Position: 158 (position.label in template: 158.A) Reactivity: 0A Position: 159 (position.label in template: 159.A) Reactivity: 1A Position: 160 (position.label in template: 160.U) Reactivity: nanU Position: 161 (position.label in template: 161.G) Reactivity: nanG Position: 162 (position.label in template: 162.G) Reactivity: nanG Position: 163 (position.label in template: 163.G) Reactivity: nanG Position: 164 (position.label in template: 164.C) Reactivity: 0.5C Position: 165 (position.label in template: 165.A) Reactivity: 0.5A Position: 166 (position.label in template: 166.C) Reactivity: 0C Position: 167 (position.label in template: 167.C) Reactivity: 0.5C Position: 168 (position.label in template: 168.G) Reactivity: nanG Position: 169 (position.label in template: 169.U) Reactivity: nanU Position: 170 (position.label in template: 170.U) Reactivity: nanU Position: 171 (position.label in template: 171.U) Reactivity: nanU Position: 172 (position.label in template: 172.A) Reactivity: nanA Position: 173 (position.label in template: 173.C) Reactivity: nanC Position: 174 (position.label in template: 174.C) Reactivity: nanC Position: 175 (position.label in template: 175.A) Reactivity: nanA Position: 176 (position.label in template: 176.C) Reactivity: nanC Position: 177 (position.label in template: 177.G) Reactivity: nanG Position: 178 (position.label in template: 178.C) Reactivity: nanC Position: 179 (position.label in template: 179.G) Reactivity: nanG Position: 180 (position.label in template: 180.C) Reactivity: nanC Position: 181 (position.label in template: 181.U) Reactivity: nanU Position: 182 (position.label in template: 182.G) Reactivity: nanG Position: 183 (position.label in template: 183.G) Reactivity: nanG Position: 184 (position.label in template: 184.G) Reactivity: nanG Position: 185 (position.label in template: 185.U) Reactivity: nanU Position: 186 (position.label in template: 186.U) Reactivity: nanU Position: 187 (position.label in template: 187.C) Reactivity: nanC Position: 188 (position.label in template: 188.A) Reactivity: nanA Position: 189 (position.label in template: 189.C) Reactivity: nanC Position: 190 (position.label in template: 190.A) Reactivity: nanA Position: 191 (position.label in template: 191.G) Reactivity: nanG Position: 192 (position.label in template: 192.A) Reactivity: nanA Position: 193 (position.label in template: 193.U) Reactivity: nanU Position: 194 (position.label in template: 194.U) Reactivity: nanU Position: 195 (position.label in template: 195.G) Reactivity: nanG Position: 196 (position.label in template: 196.A) Reactivity: nanA Position: 197 (position.label in template: 197.C) Reactivity: nanC Position: 198 (position.label in template: 198.G) Reactivity: nanG Position: 199 (position.label in template: 199.U) Reactivity: nanU Position: 200 (position.label in template: 200.G) Reactivity: nanG Position: 201 (position.label in template: 201.G) Reactivity: nanG Position: 202 (position.label in template: 202.U) Reactivity: nanU Position: 203 (position.label in template: 203.U) Reactivity: nanU Position: 204 (position.label in template: 204.G) Reactivity: nanG Position: 205 (position.label in template: 205.A) Reactivity: nanA Position: 206 (position.label in template: 206.3')3' 10 20 30 50 100 150 200


pdhR-aceE-aceF-lpd



Position: 6306-6470, Conformation: #0







Retained alignments:


   NC_002977.6       U.C...G.A.C....C..A.UG...C..C.A..U.C....AU.C.G...C...C...G..C.A..G.G.C....U.C..C....C...G.G.G...C..G..G......UG.AAG..AU.UCC....A....G...A....C....UU.....C..CC.U...C.....A..C.........G...A...C.G.A..U.....C.C...GC..GC..CU.GA.UG....GAUU.......................................CGACCG....ACGCCCU.GGCGC.U.G..C......A..G.G..A.............................................A.G.U.C.....C....C....C.A....A....G..C.G.CCU........CCUGAUCGU...............................UGGCGGCGGCAUCAUCGGC.CUGGA..AA..U..G..G.C..C.AC..G.G..U..GU.....A...U..C....A.CG...C.C...C..U.G..GG.U..G.CC.GG......U..A..U.C..A.C.C..G..U.G....G...U.GGA
   NC_003910.7       U.U...G.A.U....A..A.CG...C..A.A..U.U....AU.C.G...C...A...G..C.G..G.G.U....U.C..U....U...C.A.G...U..A..A......UU.GAC..UU.ACC....A....U...U....U....AU.....C..CC.U...A.....A..C.........G...A...U.G.A..C.....C.C...AC..GU..GU.UA.UU....GAUU.......................................CAACGG....GCGCACU.AGAAC.U.U..A......A..A.G..A.............................................U.G.U.U.....C....C....A.G....A....A..G.A.AUU........AUUAGUACU...............................UGGUGGCGGUAUCAUUGGC.CUAGA..AA..U..G..G.G..U.AC..U.G..U..AU.....A...U..U....C.UG...C.U...U..U.A..GG.U..U.CU.AA......U..G..U.A..U.C.U..G..U.U....G...U.UGA
   NC_004347.2       U.U...G.A.C....C..A.AG...C..G.A..U.C....AU.C.G...C...U...G..C.G..G.G.U....U.C..U....C...G.C.C...C..A..A......UU.AAA..CU.GCC....A....U...U....U....AU.....U..CC.C...C.....A..U.........G...A...A.G.A..C.....C.C...AC..GU..AU.UU.GG....GAUU.......................................CGACCG....ACGCAUU.AGAAC.U.G..A......A..A.G..A.............................................A.G.U.C.....C....C....U.G....G....C..A.A.AUU........GUUGGUAAU...............................GGGCGGUGGUAUUAUCGGU.UUAGA..AA..U..G..G.G..U.AC..G.G..U..UU.....A...C..U....C.UU...C.U...C..U.G..GG.C..A.GU.GA......A..A..U.C..G.A.C..G..U.G....G...U.UGA
   NC_004556.1       C.C...A.A.C....A..A.UG...C..A.U..C.A....UU.G.C...U...A...C..C.G..-.G.C....U.C..A....C...A.C.C...C..A..G......UG.AAG..CU.ACC....A....A...A....C....UU.....C..CC.U...U.....G..G.........G...A...C.G.A..C.....C.C...GC..GC..AU.CA.UG....GACU.......................................CCACUG....ACGCACU.GGAAC.U.G..G......C..C.G..A.............................................A.G.U.G.....C....C....A.A....A....A..A.A.ACU........GCUUGUCGU...............................UGGUGGCGGCAUCAUCGGC.CUAGA..AA..U..G..G.C..U.AC..C.G..U..GU.....A...C..A....A.CG...C.C...C..U.G..GG.C..A.GC.CA......C..G..U.C..A.C.C..A..U.U....G...U.CGA
   NC_004578.1       G.C...G.G.A...cC..A.CG...U..G.A..U.C....CU.U.G...C...U...U..C.G..G.G.C....U.C..G....C...G.U.C...C..U..A......UC.GAC..AU.UCC....G....C...C....A....GC.....U..CC.G...G.....U..U.........G...Au.cA.G.A..A.....A.G...UC..AU..CG.UU.--....GAUU.......................................CCACCG....GUGCGCU.GGAAU.U.U..C......A..A.C..A.............................................G.G.U.U.....C....C....A.C....A....G..C.G.UCU........GGGCGUUAU...............................CGGCGCAGGCGUAAUCGGU.CUGGA..GC..U..G..G.G..U.UC..G.G..U..CUg...g-...G..C....U.CG...C.C...U..CgG..CG.-..-.CU.CA......G..G..U.C..A.C.U..G..U.U....-...C.UGG
   NC_004603.1       U.C...G.A.C....A..A.CG...C..A.A..U.C....GU.U.G...C...G...G..C.U..G.G.U....U.C..U....C...G.U.C...C..A..A......UC.AAA..CU.GCC....A....U...U....U....AU.....C..CC.G...C.....A..U.........G...A...A.G.A..C.....C.C...AC..GU..AU.UU.GG....GACU.......................................CUACUG....ACGCUCU.UGAAC.U.G..A......A..A.G..A.............................................A.G.U.G.....C....C....A.G....A....A..A.A.ACU........GCUUAUAAU...............................GGGCGGUGGUAUCAUCGGU.CUAGA..AA..U..G..G.G..U.AC..G.G..U..UU.....A...C..C....A.CU...C.U...C..U.A..GG.U..U.CU.AA......A..G..U.U..G.A.A..G..U.U....G...U.UGA
   NC_004757.1       U.C...G.A.C....C..A.UU...G..U.G..U.C....AU.U.G...C...G...G..CcG..G.A.U....C.C..A....G...U.G.C...A..G..C......G-.CGU..AU.CCC....G....G...G....-....--.....G..CU.C...C.....C..A.........G...C...C.G.A..U.....G.A...AC..GC..AU.CA.UU....GAUU.......................................CAACCG....GAGCGCU.GGCAU.U.A..G......C..A.G..A.............................................G.A.U.U.....C....C....U.G....A....A..C.G.CAU........GCUUAUUCU...............................GGGAGGGGGGAUCAUCGGG.CUGGA..GA..U..G..G.C..U.AC..G.G..U..CU.....A...U..C....A.UG...C.G...C..U.G..GG.U..A.CC.AG......G..A..U.C..A.G.C..A..U.U....G...U.GGA
   NC_005027.1       U.C...G.A.C....A.aA.UG...-..C.A..U.C....GU.C.G...C...A...A.cA.G..G.C.A....G.C..A....U...C.C.C...C..G..C......--.--G..AU.GCC....G....C...-....-....--.....-..CC.G...C.....C..U........uU...G...A.C.A..U.....C.G...GC..A-..--.--.GC....----gaccgagu.......................cauggacaGCACCG....GUGCACU.GGCAC.U.C..A......A..A.G..A.............................................C.A.U.C.....C....C....G.G....A....A..A.C.CUU........GCUCGUCGU...............................CGGUGGCGGCUACAUCGGU.UUGGA..AA..U..G..G.G..A.AC..C.G..U..CU....aC...G..C....U.CA...C.-...U..U.G..GG.U..U.CC.AA......G..G..U.C..A.G.C..G..U.G....G...U.UGA
   NC_005126.1       U.U...G.A.U....A..A.CG...C..C.A..U.U....AU.U.G...C...C...G..C.G..G.G.C....U.C..C....C...G.U.C...C..U..A......UC.CAA..CU.GCC....A....U...U....U....AU.....U..CC.U...C.....A..U.........G...A...U.G.A..C.....C.C...GC..GC..GU.UU.GG....GAUU.......................................CUACCG....AUGCUUU.GGCGC.U.G..A......C..U.A..C.............................................G.G.U.U.....C....C....U.G....G....C..C.G.CUU........GUUGGUCAU...............................GGGCGGUGGUAUUAUCGGU.CUGGA..AA..U..G..G.G..A.AC..C.G..U..UU.....A...C..C....A.CG...C.U...C..U.G..GG.C..U.CU.CA......G..A..U.U..G.A.U..G..U.U....G...U.UGA
   NC_006512.1       U.C...G.A.U....A..A.CG...C..G.A..U.U....AU.U.G...C...U...G..C.A..G.G.C....U.C..U....C...A.A.G...C..C..A......UU.AAA..UU.GCC....G....U...U....C....AU.....U..CC.A...C.....A..U.........G...A...C.G.A..C.....G.A...CC..GC..GU.AU.GG....GAUU.......................................CCACCG....ACGCGCU.GGAAC.U.G..A......A..A.G..A.............................................A.A.U.U.....C....Cu..aA.G....A....A..A.A.UGU........UAUUGUUAG...............................GCG--GUGGUAUCAUCGCU.CUGGA..AA..U..G..G.G..G.CA..G.G..U..UU.....A...C..G....C.AU...C.A...C..U.A..GG.U..U.CU.AA......G..G..U.U..G.A.U..G..U.G....G...U.UGA
   NC_006513.1       -.-...-.-.C....A..A.UG...C..A.U..-.C....AU.C.G...C...C...G..CcG..G.C.U....C.G..G....C...C.G.-...C..G..G......UG.CAU..CU.GCC....G....U...U....C....AU.....C..CC.G...A.....-..-.........-...A...G.G.A..U.....C.C...GC..GC..AU.CG.UC....GACU.......................................CGACCG....GCGCGCU.CGAG-.-.-..-......-..-.-..-cugcgcacuuccg.................acggcaaggcgcc..-.-.C.G.....C....G....A.A....G....A..U.G.CUC........----GUCAU...............................CGGCGGCGGCAUCAUCGGC.CUCGA..GA..U..G..G.C..G.AC..U.G..U..CUa...uU...C..G....A.CG...C.U...C..G.G..UA.C..C.CG.CG......-..-..U.C..G.A.U..G..U.C....G...U.C--
   NC_007292.1       U.C...A.A.U....U..A.CG...C..U.A..U.U....GU.A.G...C...A...G.cA.G..G.A.U....C.A..C....A...U.A.C...U..G..U......AU.-CA..CU.ACC....A....U...G....U....AU.....U..CC.U...A.....A..U.........-...-...-.G.A..U.....C.A...GC..GA..AU.UU.GG....AAUU.......................................CAACUG....AUGCUCU.AUCUU.U.A..C......A..A.U..C.............................................A.A.U.A.....C....C....C.G....A....A..C.G.UUU........ACUAAUUAU...............................AGGCUCAGGAGCUAUAGGA.UUAGA..AA..U..G..G.C..C.AC..A.A..U..AU.....A...U..C....G.UG...C.U...U..U.U..GG.A..U.CA.GA......A..A..U.A..G.A.U..A..U.A....G...U.AGA
   NC_007481.1       U.C...G.A.C....A..A.CG...C..A.A..U.U....AU.U.G...C...U...G..C.A..G.G.U....U.C..U....A...A.A.C...C..A..G......UU.AGC..UU.ACC....U....U...U....C....AU.....C..CC.A...G.....A..A.........G...A...U.G.A..-.....-.-...CC..GC..GU.AA.UU....GACU.......................................CAACUG....GUGCACU.AGAGC.U.U..A......A..A.G..A............................................uA.U.C.C.....C....U....G.A....A....A..A.G.CUA........-CUUGUACU...............................UGGCGGUGGUAUUAUUGGC.CUUGA..AA..U..G..G.G..C.AC..A.G..U..AU.....A...C..C....G.UG...C.A...C..U.A..GG.U..U.CA.GC......A..A..U.C..G.A.C..G..U.A....G...U.UGA
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   NZ_LT906451.1     U.U...G.A.A....A..A.UG...C..U.A..U.C....AU.U.G...C...U...G..U.U..G.G.U....A.G..U....G...A.G.U...C..G..A......UA.AAG..CU.CCC....C....U...U....C....AU.....U..CC.-...-.....-..U.........G...A...A.G.A..U.....C.C...UC..GU..AU.UU.UU....AGCU.......................................CAACGG....GGGCAUU.-----.-.-..-......-..-.-..-ggagcuugc.........................ugauauuaa..-.-.-.-.....-....-....A.G....G....A..A.A.UUU........AUUAGUCAU...............................UGGUGGUGGUAUUAUUGGU.CUUGA..AA..U..G..G.C..A.AC..G.G..U..UU.....A...U..U...cA.GC...U.A...U..G.G..G-.-..-.UG.UU......G..A..U.G.uG.A.C..A.gU.G....G...U.UGA
   NZ_LT906460.1     U.C...A.A.A....A..A.CG...C..A.A..U.U....AU.U.G...C...A...A..C.A..G.G.U....U.C..A....A...G.A.C...C..A..A......UU.GAA..AU.UCC....-....-...U....A....AU.....U..UC.A...A.....A..U.........-...U...U.G.G..U.....C.A...AC..GC..GU.CA.UU....GAUU.......................................CAACUG....GUGCUUU.AAAUU.U.A..C......A..A.G..A.............................................A.G.U.U....cC....U....G.G....U....A..A.A.CUU........GUU-GUAGU...............................UGGUGGCGGUUAUAUCGGA.UCAGA..AC.uU..G..G.U.aC.UG..C.U..U..UU.....G...C..U....A.AC...U.-...U..U.-..GG.U..U.CA.GA......A..G..U.U..A.C.U..A..U.U....U...U.AGA
   NZ_LT906462.1     U.U...A.A.A....A..A.UG...C..A.A..U.C....AU.U.G...C...A...A..C.U..G.G.U....U.C..A....C...G.C.C...C..A..A......UU.GAA..AU.UCC....-....-...U....A....AU.....U..UC.A...A.....A..U.........-...U...U.G.G..U.....A.A...AC..GU..GU.UA.UC....GAUU.......................................CAACUG....GUGCAUU.AGCAC.U.U..A......A..A.G..A.............................................A.G.U.U.....C....C....A.A....A....A..A.A.AUU........AGUAGUAGU...............................UGGUGGCGGAUAUAUUGGA.UCUGA..GC..U..A..G.G..A.AC..U.G..C..AU.....A...U..G....C.UA...A.C...U..U.U..GG.U..U.CU.GA......A..G..U.U..A.C.A..A..U.U....C...U.UGA
   NZ_LT906463.1     U.U...G.A.U....A..A.UG...C..G.A..U.U....AU.U.G...C...A...G..C.C..G.G.U....U.C..C....C...G.U.C...C..G..A......UU.CAA..UU.ACC....A....U...U....U....AU.....U..CC.G...C.....A..C.........G...A...A.G.A..U.....C.C...AC..GA..GU.GU.GG....GAUU.......................................CAACGG....AUGCACU.UAAAC.U.A..A......A..A.G..A.............................................A.G.U.A.....C....C....G.A....A....A..A.A.ACU........UUUAAUUAU...............................GGGCGGUGGCAUUAUCGGU.UUAGA..GA..U..G..G.G..U.AC..C.G..U..GU.....A...U..G....A.UG...C.C...U..U.A..GG.U..U.CU.GA......A..G..U.U..G.A.A..G..U.G....G...U.UGA
   NZ_LT906479.1     U.C...G.A.U....A..A.CG...C..C.A..U.C....AU.C.G...C...C...G..C.A..G.G.U....U.C..C....C...G.U.C...C..G..A......UC.CAA..CU.GCC....A....U...U....C....AU.....U..CC.U...C.....A..U.........G...A...A.G.A..U.....C.C...AC..GC..GU.GU.GG....GACU.......................................CUACCG....AUGCGCU.GGAGC.U.G..A......A..A.A..C.............................................C.G.U.C.....C....C....A.G....A....G..C.G.UCU........GCUGGUCAU...............................GGGCGGCGGCAUCAUCGGC.CUGGA..AA..U..G..G.G..C.AC..C.G..U..AU.....A...C..C....A.UG...C.G...C..U.G..GG.U..U.CG.CA......G..A..U.C..G.A.C..G..U.G....G...U.CGA
   NZ_LT906482.1     -.-...-.-.-....A..A.CU...G..U.A..U.C....AU.C.G...C...C...G..U.C..G.G.C....A.G..C....C...G.C.G...U..G..G......UG.AAA..CU.GCC....C....U...U....C....AU.....C..CC.-...-.....-..U.........G...A...A.G.A..C.....C.C...AC..GC..AU.UG.UG....GACA.......................................GCACCG....GCGCGCU.GGAAC.U.-..-......-..-.-..-gcgccaaaa.........................cggcggcaa..A.C.U.G.....C....C....A.G....A....A..A.A.AAU........GCUGGUCAU...............................CGGCGGCGGCAUCAUCGGU.CUGGA..AA..U..G..G.G..C.AC..C.G..U..GU.....A...C..A....G.CA...C.G...C..U.G..GG.C..G.CA.CG......C..U..U.G..G.A.C..G..U.A....G...U.AGA
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   NZ_OU594967.1     U.C...G.A.U....A..A.UG...C..G.A..U.U....AU.C.G...C...U...G..C.G..G.G.G....U.C..U....C...G.U.C...C..G..G......UU.CAA..CU.GCC....A....U...U....U....AU.....C..CC.A...C.....A..C.........A...A...U.G.A..U.....G.A...AC..GC..GU.UU.GG....GACU.......................................CAACCG....AUGCGCU.GGAAC.U.U..A......A..A.G..A.............................................G.G.U.U.....C....C....U.G....A....G..A.A.GCU........AUUGGUUUU...............................AGGUGGCGGGAUUAUUGGC.CUAGA..AA..U..G..G.G..G.AC..A.G..U..AU.....A...C..A....G.UG...C.A...U..U.A..GG.C..A.GC.AA......C..A..U.U..G.A.U..G..U.U....G...U.UGA
   NZ_OU907312.1     U.U...G.A.G....C..A.CG...C..U.A..U.C....AU.U.G...C...U...G..C.C..G.G.U....U.C..A....C...G.G.C...C..G..A......UU.CAA..CU.GCC....C....U...U....U....AU.....U..CC.U...C.....A..U.........G...A...G.G.A..U.....C.C...AC..GA..AU.UU.GG....GAUU.......................................CAACGG....CCGCC--.-----.-.-..-......-..-.-..-cuaaccuugca.....................aacggucccca..-.-.-.-.....-....-....-.-....A....A..C.G.CUU........ACUGAUUAU...............................GGGGGGAGGGAUUAUUGGU.UUAGA..GA..U..G..G.C..G.AC..G.G..U..UU.....A...U..C....A.CG...C.C...U..U.A..GG.A..U.CA.CA......G..A..U.C..G.A.G..G..U.A....G...U.UGA
   NZ_OU912926.1     U.U...G.A.C....A..A.UG...C..C.A..U.U....AU.U.G...C...A...G..C.A..G.G.C....U.C..C....A...G.C.G...U..G..G......CG.CGU..AU.UCC....C....G...G....U....UU.....U..CC.G...U.....A..C.........G...A...U.G.A..U.....C.C...AC..GC..UU.GA.UU....GAUU.......................................CCACCG....GUGCAUU.GCAGU.U.G..C......A..G.G..A.............................................U.A.U.C.....C....C....U.G....A....G..C.G.UAU........GUUGAUUAU...............................UGGCGGAGGCAUCAUCGGC.UUGGA..AA..U..G..G.G..C.AU..G.G..U..AU.....A...U..G....A.CG...C.G...C..U.A..GG.C..U.CC.AA......A..A..U.U..U.C.U..G..U.A....G...U.CGA
   NZ_OW485601.1     U.C...G.A.C....A..G.CG...C..C.A..U.C....AU.C.G...C...C...G..C.G..G.G.A....U.C..G....G...A.G.C...C..G..G......UG.ACC..CU.GCC....C....U...U....C....AU.....C..CC.G...C.....A..U.........G...A...C.G.A..U.....C.C...CC..GG..GU.CA.UC....GACA.......................................GCACCG....GCGCGCU.GGAUC.U.G..C......A..G.G..A.............................................C.G.U.G.....C....C....G.A....A....G..C.G.CCU........GCUGGUGAU...............................CGGCGGCGGCAUCAUCGGG.CUGGA..AA..U..G..G.C..G.AC..G.G..U..GU.....A...C..C....A.CG...C.G...CucG.G.cAG.C..G.CG.GU......G..A..C.G..G.U.C..G..U.G....G...A.A--


   Structure         (.(...(.(.(.......(.((...(..(.(..(.(.......(.(...(...(...(..(.(..(.(.(..................(.(.(...(..(....................(((.................................((.(...(..............................................(..((........((...............................................))........)))..((.((.((.(.................................................................).).).......)....)....).)............(.(.(((................................................))))))))).......)))............)..)..).)..)....................)...)..)...........).)...)..).)..........)).........)..)..).)..)...)..)..)......)...).)))


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pdhR-aceE-aceF-lpd



Position: 6306-6470, Conformation: #0







97% 90% 75% 50% Nucleotide present N N N Nucleotide identify E < 0.1 Base-pair covariation E < 0.05 Helix-level covariation 97% 90% 75%

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