pdhR-aceE-aceF-lpd



Position: 2445-2614, Conformation: #1







DMS reactivity > 1.0 0.0 0.4 0.7 G/U/No data
Position: 0 (position.label in template: 0.5')5' Position: 1 (position.label in template: 1.U) Reactivity: nanU Position: 2 (position.label in template: 2.U) Reactivity: nanU Position: 3 (position.label in template: 3.C) Reactivity: nanC Position: 4 (position.label in template: 4.G) Reactivity: nanG Position: 5 (position.label in template: 5.G) Reactivity: nanG Position: 6 (position.label in template: 6.C) Reactivity: nanC Position: 7 (position.label in template: 7.G) Reactivity: nanG Position: 8 (position.label in template: 8.C) Reactivity: nanC Position: 9 (position.label in template: 9.G) Reactivity: nanG Position: 10 (position.label in template: 10.C) Reactivity: nanC Position: 11 (position.label in template: 11.U) Reactivity: nanU Position: 12 (position.label in template: 12.G) Reactivity: nanG Position: 13 (position.label in template: 13.U) Reactivity: nanU Position: 14 (position.label in template: 14.U) Reactivity: nanU Position: 15 (position.label in template: 15.G) Reactivity: nanG Position: 16 (position.label in template: 16.G) Reactivity: nanG Position: 17 (position.label in template: 17.A) Reactivity: nanA Position: 18 (position.label in template: 18.A) Reactivity: nanA Position: 19 (position.label in template: 19.G) Reactivity: nanG Position: 20 (position.label in template: 20.A) Reactivity: nanA Position: 21 (position.label in template: 21.G) Reactivity: nanG Position: 22 (position.label in template: 22.C) Reactivity: nanC Position: 23 (position.label in template: 23.A) Reactivity: nanA Position: 24 (position.label in template: 24.G) Reactivity: nanG Position: 25 (position.label in template: 25.A) Reactivity: nanA Position: 26 (position.label in template: 26.G) Reactivity: nanG Position: 27 (position.label in template: 27.C) Reactivity: nanC Position: 28 (position.label in template: 28.A) Reactivity: nanA Position: 29 (position.label in template: 29.A) Reactivity: nanA Position: 30 (position.label in template: 30.A) Reactivity: nanA Position: 31 (position.label in template: 31.G) Reactivity: nanG Position: 32 (position.label in template: 32.A) Reactivity: nanA Position: 33 (position.label in template: 33.G) Reactivity: nanG Position: 34 (position.label in template: 34.A) Reactivity: nanA Position: 35 (position.label in template: 35.U) Reactivity: nanU Position: 36 (position.label in template: 36.C) Reactivity: nanC Position: 37 (position.label in template: 37.U) Reactivity: nanU Position: 38 (position.label in template: 38.C) Reactivity: 0.5C Position: 39 (position.label in template: 39.U) Reactivity: nanU Position: 40 (position.label in template: 40.A) Reactivity: 0.5A Position: 41 (position.label in template: 41.C) Reactivity: 1C Position: 42 (position.label in template: 42.C) Reactivity: 0C Position: 43 (position.label in template: 43.A) Reactivity: 1A Position: 44 (position.label in template: 44.C) Reactivity: 1C Position: 45 (position.label in template: 45.U) Reactivity: nanU Position: 46 (position.label in template: 46.A) Reactivity: 0A Position: 47 (position.label in template: 47.U) Reactivity: nanU Position: 48 (position.label in template: 48.C) Reactivity: 0.5C Position: 49 (position.label in template: 49.G) Reactivity: nanG Position: 50 (position.label in template: 50.C) Reactivity: 0C Position: 51 (position.label in template: 51.U) Reactivity: nanU Position: 52 (position.label in template: 52.U) Reactivity: nanU Position: 53 (position.label in template: 53.U) Reactivity: nanU Position: 54 (position.label in template: 54.C) Reactivity: 0.5C Position: 55 (position.label in template: 55.G) Reactivity: nanG Position: 56 (position.label in template: 56.U) Reactivity: nanU Position: 57 (position.label in template: 57.U) Reactivity: nanU Position: 58 (position.label in template: 58.C) Reactivity: 0C Position: 59 (position.label in template: 59.G) Reactivity: nanG Position: 60 (position.label in template: 60.U) Reactivity: nanU Position: 61 (position.label in template: 61.G) Reactivity: nanG Position: 62 (position.label in template: 62.C) Reactivity: 0.5C Position: 63 (position.label in template: 63.U) Reactivity: nanU Position: 64 (position.label in template: 64.C) Reactivity: 0C Position: 65 (position.label in template: 65.U) Reactivity: nanU Position: 66 (position.label in template: 66.G) Reactivity: nanG Position: 67 (position.label in template: 67.A) Reactivity: 1A Position: 68 (position.label in template: 68.A) Reactivity: 1A Position: 69 (position.label in template: 69.C) Reactivity: 0C Position: 70 (position.label in template: 70.G) Reactivity: nanG Position: 71 (position.label in template: 71.U) Reactivity: nanU Position: 72 (position.label in template: 72.G) Reactivity: nanG Position: 73 (position.label in template: 73.A) Reactivity: 1A Position: 74 (position.label in template: 74.U) Reactivity: nanU Position: 75 (position.label in template: 75.G) Reactivity: nanG Position: 76 (position.label in template: 76.C) Reactivity: 0C Position: 77 (position.label in template: 77.U) Reactivity: nanU Position: 78 (position.label in template: 78.G) Reactivity: nanG Position: 79 (position.label in template: 79.A) Reactivity: 1A Position: 80 (position.label in template: 80.A) Reactivity: 0A Position: 81 (position.label in template: 81.G) Reactivity: nanG Position: 82 (position.label in template: 82.A) Reactivity: 0.5A Position: 83 (position.label in template: 83.A) Reactivity: 1A Position: 84 (position.label in template: 84.C) Reactivity: 1C Position: 85 (position.label in template: 85.A) Reactivity: 1A Position: 86 (position.label in template: 86.A) Reactivity: 0A Position: 87 (position.label in template: 87.G) Reactivity: nanG Position: 88 (position.label in template: 88.U) Reactivity: nanU Position: 89 (position.label in template: 89.C) Reactivity: 0.5C Position: 90 (position.label in template: 90.G) Reactivity: nanG Position: 91 (position.label in template: 91.A) Reactivity: 0A Position: 92 (position.label in template: 92.U) Reactivity: nanU Position: 93 (position.label in template: 93.C) Reactivity: 0.5C Position: 94 (position.label in template: 94.A) Reactivity: 1A Position: 95 (position.label in template: 95.A) Reactivity: 0A Position: 96 (position.label in template: 96.A) Reactivity: 0A Position: 97 (position.label in template: 97.G) Reactivity: nanG Position: 98 (position.label in template: 98.A) Reactivity: 0.5A Position: 99 (position.label in template: 99.U) Reactivity: nanU Position: 100 (position.label in template: 100.C) Reactivity: 0C Position: 101 (position.label in template: 101.G) Reactivity: nanG Position: 102 (position.label in template: 102.U) Reactivity: nanU Position: 103 (position.label in template: 103.C) Reactivity: 0.5C Position: 104 (position.label in template: 104.U) Reactivity: nanU Position: 105 (position.label in template: 105.G) Reactivity: nanG Position: 106 (position.label in template: 106.G) Reactivity: nanG Position: 107 (position.label in template: 107.U) Reactivity: nanU Position: 108 (position.label in template: 108.A) Reactivity: 0A Position: 109 (position.label in template: 109.C) Reactivity: 0.5C Position: 110 (position.label in template: 110.C) Reactivity: 0C Position: 111 (position.label in template: 111.G) Reactivity: nanG Position: 112 (position.label in template: 112.A) Reactivity: 0A Position: 113 (position.label in template: 113.U) Reactivity: nanU Position: 114 (position.label in template: 114.C) Reactivity: 0.5C Position: 115 (position.label in template: 115.A) Reactivity: 1A Position: 116 (position.label in template: 116.U) Reactivity: nanU Position: 117 (position.label in template: 117.C) Reactivity: 0C Position: 118 (position.label in template: 118.G) Reactivity: nanG Position: 119 (position.label in template: 119.C) Reactivity: 0.5C Position: 120 (position.label in template: 120.C) Reactivity: 0C Position: 121 (position.label in template: 121.G) Reactivity: nanG Position: 122 (position.label in template: 122.A) Reactivity: 0.5A Position: 123 (position.label in template: 123.C) Reactivity: 0.5C Position: 124 (position.label in template: 124.G) Reactivity: nanG Position: 125 (position.label in template: 125.A) Reactivity: 1A Position: 126 (position.label in template: 126.A) Reactivity: 0.5A Position: 127 (position.label in template: 127.G) Reactivity: nanG Position: 128 (position.label in template: 128.C) Reactivity: 0C Position: 129 (position.label in template: 129.G) Reactivity: nanG Position: 130 (position.label in template: 130.C) Reactivity: 1C Position: 131 (position.label in template: 131.G) Reactivity: nanG Position: 132 (position.label in template: 132.U) Reactivity: nanU Position: 133 (position.label in template: 133.A) Reactivity: 0.5A Position: 134 (position.label in template: 134.C) Reactivity: 0.5C Position: 135 (position.label in template: 135.U) Reactivity: nanU Position: 136 (position.label in template: 136.U) Reactivity: nanU Position: 137 (position.label in template: 137.U) Reactivity: nanU Position: 138 (position.label in template: 138.C) Reactivity: 0C Position: 139 (position.label in template: 139.G) Reactivity: nanG Position: 140 (position.label in template: 140.G) Reactivity: nanG Position: 141 (position.label in template: 141.U) Reactivity: nanU Position: 142 (position.label in template: 142.A) Reactivity: 0.5A Position: 143 (position.label in template: 143.U) Reactivity: nanU Position: 144 (position.label in template: 144.G) Reactivity: nanG Position: 145 (position.label in template: 145.G) Reactivity: nanG Position: 146 (position.label in template: 146.A) Reactivity: 0A Position: 147 (position.label in template: 147.A) Reactivity: 0.5A Position: 148 (position.label in template: 148.G) Reactivity: nanG Position: 149 (position.label in template: 149.G) Reactivity: nanG Position: 150 (position.label in template: 150.U) Reactivity: nanU Position: 151 (position.label in template: 151.C) Reactivity: 0.5C Position: 152 (position.label in template: 152.U) Reactivity: nanU Position: 153 (position.label in template: 153.G) Reactivity: nanG Position: 154 (position.label in template: 154.U) Reactivity: nanU Position: 155 (position.label in template: 155.U) Reactivity: nanU Position: 156 (position.label in template: 156.C) Reactivity: 0C Position: 157 (position.label in template: 157.C) Reactivity: 0C Position: 158 (position.label in template: 158.G) Reactivity: nanG Position: 159 (position.label in template: 159.U) Reactivity: nanU Position: 160 (position.label in template: 160.C) Reactivity: 1C Position: 161 (position.label in template: 161.A) Reactivity: 0.5A Position: 162 (position.label in template: 162.G) Reactivity: nanG Position: 163 (position.label in template: 163.A) Reactivity: 1A Position: 164 (position.label in template: 164.U) Reactivity: nanU Position: 165 (position.label in template: 165.U) Reactivity: nanU Position: 166 (position.label in template: 166.G) Reactivity: nanG Position: 167 (position.label in template: 167.G) Reactivity: nanG Position: 168 (position.label in template: 168.U) Reactivity: nanU Position: 169 (position.label in template: 169.A) Reactivity: 0A Position: 170 (position.label in template: 170.U) Reactivity: nanU Position: 171 (position.label in template: 171.U) Reactivity: nanU Position: 172 (position.label in template: 172.U) Reactivity: nanU Position: 173 (position.label in template: 173.A) Reactivity: 1A Position: 174 (position.label in template: 174.C) Reactivity: nanC Position: 175 (position.label in template: 175.A) Reactivity: nanA Position: 176 (position.label in template: 176.G) Reactivity: nanG Position: 177 (position.label in template: 177.C) Reactivity: nanC Position: 178 (position.label in template: 178.C) Reactivity: nanC Position: 179 (position.label in template: 179.C) Reactivity: nanC Position: 180 (position.label in template: 180.G) Reactivity: nanG Position: 181 (position.label in template: 181.A) Reactivity: nanA Position: 182 (position.label in template: 182.A) Reactivity: nanA Position: 183 (position.label in template: 183.C) Reactivity: nanC Position: 184 (position.label in template: 184.G) Reactivity: nanG Position: 185 (position.label in template: 185.G) Reactivity: nanG Position: 186 (position.label in template: 186.U) Reactivity: nanU Position: 187 (position.label in template: 187.C) Reactivity: nanC Position: 188 (position.label in template: 188.A) Reactivity: nanA Position: 189 (position.label in template: 189.G) Reactivity: nanG Position: 190 (position.label in template: 190.C) Reactivity: nanC Position: 191 (position.label in template: 191.A) Reactivity: nanA Position: 192 (position.label in template: 192.G) Reactivity: nanG Position: 193 (position.label in template: 193.U) Reactivity: nanU Position: 194 (position.label in template: 194.A) Reactivity: nanA Position: 195 (position.label in template: 195.C) Reactivity: nanC Position: 196 (position.label in template: 196.A) Reactivity: nanA Position: 197 (position.label in template: 197.C) Reactivity: nanC Position: 198 (position.label in template: 198.C) Reactivity: nanC Position: 199 (position.label in template: 199.C) Reactivity: nanC Position: 200 (position.label in template: 200.C) Reactivity: nanC Position: 201 (position.label in template: 201.G) Reactivity: nanG Position: 202 (position.label in template: 202.C) Reactivity: nanC Position: 203 (position.label in template: 203.A) Reactivity: nanA Position: 204 (position.label in template: 204.G) Reactivity: nanG Position: 205 (position.label in template: 205.G) Reactivity: nanG Position: 206 (position.label in template: 206.A) Reactivity: nanA Position: 207 (position.label in template: 207.C) Reactivity: nanC Position: 208 (position.label in template: 208.C) Reactivity: nanC Position: 209 (position.label in template: 209.G) Reactivity: nanG Position: 210 (position.label in template: 210.C) Reactivity: nanC Position: 211 (position.label in template: 211.3')3' 10 20 30 50 100 150 200


pdhR-aceE-aceF-lpd



Position: 2445-2614, Conformation: #1







Retained alignments:


   NC_002977.6       C.G.A.G...A..C..GA....U......G.......C...U......G..A......A...aA...Gc..uC....G.....G.....A......G........G....A....C...C...G......A....G......A...A..A..U.....G......U...CC...ACCAC..C......................................................A..U..G.G....UGUU..CGU..C..C..G...C-.-..-...C..U..GC.U...G....UCG.U.....C.C.C..U..GcugC.G...G....G..AC...AA....G.....G...C.....G...C..U.....-.....-..-.....G.G.GC...C.G...C..UacgU.G...GU..GC....................................CGAUC...GUG...C...CCGACGAGGCC...C.GCACCUUCGGCAUGGAG..G..GC..CUGUU..CC.GGCA.AUACGGC...AUCUA..UU.....................................................C..CU.C.C.G.U.C..GG.CCAG..CUC.UA.C..G..A.A...CC.G..C......AG..G...A..C...GC.C
   NC_003910.7       C.U.U.A...A..A..GG....G......U.......U...C......A..G......G....U...G....-....-.....-.....A......G........C....G....U...C...A......A....G......U...A..U..C.....A......U...CA...AC-AA..U......................................................G..A..C.C....UUUG..UGC..G..U..G...UA.C..U...U..A..AU.A...G....CUU.A.....U.U.A..-..-...A.A...A....G..AU...AA....G.....A...A.....A...A..U.....C.....G..G.....U.A.AG...C.G...C..A...U.U...GU..GC....................................CAAUC...AUU...C...CUGAUGAAGCA...C.GUACCUUUGGUAUGGAA..G..GU..UUAUU..CC.GUCA.AGUUGGU...AUUUA..U-.....................................................G..CA.A.G.UgA.A..GG.UCAG..AAG.UA.U..G..U.U...CC.A..C......AA..G...A..-...UG.C
   NC_004347.2       U.U.U.U...A..C..AG....G......G.......C...U......C..U......A....A...-....-....-.....C.....G......-........-....G....C...C...G......U....G......A...A..A..U.....U......U...CG...UCAAC..U......................................................A..U..G.G....CGUU..UGU..U..C..G...CG.U..A...C..U..GA.C...Ug.caCUG.U.....U.A.A..A..A...G.A...C....A..AG...AA....A.....A...U.....U...G..G.....C.....A..A.....A.A.AU...-.-...-..A...U.U...GU..GC....................................CAAUU...AUC...C...CUGACGAAGCG...C.GUACUUUCGGUAUGGAA..G..GU..CUGUU..CC.GCCA.AGUGGGU...AUUUA..UG.....................................................C..UC.A.C.G.A.A..GG.CCAA..AAA.UA.C..G..U.A...CC.G..C......AA..G...A..C...UC.U
   NC_004603.1       A.A.G.C...-..C..AC....U......A.......C...U......A..G......A....A...G....A....A.....C.....A......G........A....A....G...C...G......U....G......A...U..A..U.....C......U...CU...UCUAC..U......................................................A..U..G.G....CAUU..CGU..A..C..G...UG.C..A...C..U..UA.A...C....GUU.C.....U.A.C..U..U...A.A...G....A..AC...AA....G.....A...A.....C...A..U.....U.....G..G.....U.A.AG...A.A...C..A...U.C...GU..UC....................................CUAUC...AUU...G...CUGACGAAGCG...C.GUACAUUCGGUAUGGAA..G..GU..CUGUU..CC.GUCA.AAUCGGU...AUUUA..CA.....................................................A..CC.C.G.C.A.C..GG.CCAG..AAC.UA.C..A..C.A...CC.A..C......AA..G...A..C...CG.C
   NC_005126.1       U.G.G.U...G..C..GU....U......G.......C...U......G..G......A....A...G....A....A.....C.....A......G........A....A....C...A...A......A....G......A...G..A..U.....U......U...CU...ACCAC..U......................................................A..U..C.G....CUUU..UGU..U..C..G...UG.C..C...U..U..GA.A...C....GUG.A.....U.G.U..U..G...A.A...G....A..AC...AA....A.....U...C.....A...A..U.....C.....A..A.....A.G.AU...C.G...U..C...U.G...GU..GC....................................CAAUC...AUU...G...CUGAUGAAGCG...C.GUACAUUUGGUAUGGAA..G..GU..CUGUU..CC.GUCA.GAUCGGC...AUCUA..CA.....................................................G..CU.C.U.A.A.C..GG.CCAG..CAG.UA.U..A..C.U...CC.G..C......AG..G...A..C...CG.U
   NC_006300.1       C.A.A.U...U..-..--....-......A.......U...U......A..G......A....A...-....-....-.....-.....-......G........A....G....C...A...A......C....C......U...C..G..UgcgauU......U...CA...ACCAC..A......................................................A..U..G.G....CGUU..UGU..U..C..G...CG.U..A...U..U..AA.A...U....ACC.U.....U.A.U..U..G...A.A...A....A..AU...AA....A.....G...A.....U...A..U.....C.....G..G.....U.A.AA...C.A...A..A...U.U...GU..GC....................................CGAUC...AUU...G...CCGACGAAGCU...C.GGACUUUCGGUAUGGAA..G..GU..UUAUU..CC.GUCA.AGUGGGU...AUCUA..UA.....................................................A..UC.C.G.C.A.C..GG.UCAA..AAC.UA.U..G..U.A...CC.U..U......CG..G...A..Ua.aAG.-
   NC_006512.1       U.G.A.U...G..C..GG....U......U.......C...U......G..A......A....A..gG....U....U.....C.....A......G........G....G....G...Au.cG......U....G......A...A..A..U.....U......U...CC...UCAAC..U......................................................A..U..G.G....CCUU..UGU..U..C..G...UG.U..A...C..U..GA.C...A....GCG.C.....U.G.C..U..G...A.A...A....G..AC...AA....G.....A...A.....A...A..U.....U.....G..G.....U.A.AA...C.G...U..A...U.U...GU..GC....................................CAAUU...AUU...C...CGGAUGAAGCU...C.GUACCUUUGGUAUGGAA..G..GC..UUGUU..CC.GUCA.GGUGGGU...AUUUA..UU.....................................................C..GC.A.C.C.A.U..GG.CCAG..AAA.UA.C..A..C.G...CC.G..C......AG..G...A..Ua.aAG.-
   NC_007292.1       U.U.A.U...C..C..UU....U......G.......C...U......A..A......U....A...C....A....A.....C.....A......A........A....A....U...A...A......A....G......A...U..A..U.....U......U...CU...ACUAC..U......................................................C..U..C.G....CAUU..UAU..A..C..G...UG.U..U...C..U..AA.A...U....AUA.U.....U.A.C..U..A...A.A...A....U..AC...AC....C.....C...C.....A...A..U.....U.....A..A.....A.A.AU...A.G...A..C...U.A...GU..AC....................................CCAUA...AUU...G...CUGAUGAGGGC...C.GAACCUUCGGGAUGGAA..G..GG..CUAUU..UC.GUCA.AAUCGGU...AUUUA..UA.....................................................A..CU.C.C.A.U.G..GG.GCAA..CAA.UA.C..A..C.U...CC.U..C......AA..G...-..-...AU.C
   NC_007481.1       U.A.A.U...C..C..GC....U......A.......C...U......U..G......A....A...G....A....A.....C.....A......A........A....A....A...C...G......U....G......A...U..A..U.....U......U...CU...ACCAC..U......................................................A..U..G.G....GUUU..UGU..U..C..G...UG.C..U...C..U..UA.A...U....AUU.U.....U.A.C..U..A...A.A...A....G..AC...AA....A.....G...G.....C...A..U.....U.....G..G.....U.A.AA...A.A...C..A...U.A...GU..AC....................................CUAUU...AUU...G...CCGACGAAGCA...C.GUACCUUUGGUAUGGAA..G..GU..UUGUU..CC.GCCA.AAUUGGU...AUUUA..UA.....................................................A..CC.C.G.C.A.U..GG.CCAA..AAC.UA.C..A..C.A...CC.U..C......AA..G...A..U...CG.C
   NC_007510.1       -.-.-.-...C..C..GC....U......G.......C...U......G..A......A....G...G....G....C.....A.....C......G........G....G....C...G...A......A....GgccgugA...G..A..U.....C......U...CG...ACGAC..G......................................................A..U..G.U....CGUU..CGU..G..C..G...GA.U..C...C..U..GA.A...C....AUC.C.....U.G.C..U..G...A.A...G....G..AC...AA....G.....G...C.....G...C..U.....G.....G..G.....C.A.AG...C.G...C..A...U.C...GU..GC....................................CGAUC...GUC...C...CGGACGAAUCG...C.GUACGUUCGGCAUGGAA..G..GC..CUGUU..CC.GCCA.GAUCGGU...AUCUG..GA.....................................................A..CC.A.G.G.A.A..GG.CCAG..AAG.UA.C..G..U.G...CC.G..G......AA..G...AuuC...CG.A
   NC_007614.1       U.-.-.-...-..G..CU....C......A.......A...G......G..C......A....A...G...cG....G.....U.....G......A........G....G....G...A...A......G....G......G...A..A..U.....C......U..uCC...ACCAC..C......................................................A..U..G.G....CUUU..UGU..G..C..G...CA.U..C...C..U..CA.A...U....AUC.C.....U.C.A..U..A...A.A...G....G..AC...AA....G.....A...A.....C...A..U.....C.....G..G.....C.A.AG...C.G...G..G...U.C...GU..GC....................................CGAUU...GUG...G...CGGACGAGUCG...C.GCACCUUUGGCAUGGAA..G..GC..AUGUU..CC.GGCA.ACUGGGC...AUCUG..GU.....................................................C..UU.C.C.A.C.C..GG.GCAG..CUU.UA.C..A..C.G...CC.C..G......AG..Ga.uG..C...UG.A
   NC_007645.1       -.-.-.-...-..-..--....-......A.......U...U......G..A......A....A...G...gC...aG.....C.....G......A........C....G....G..uC...G......C....G......A...A..A..U.....C......U...CC...ACCAC..C......................................................A..U..G.G....CGUU..UGU..G..C..G...CG.U..G...C..U..CA.A...U....GCC.U.....U.G.G..U..C...A.A...G....G..AC...AA....G.....C...A.....G...A..U.....C.....G..G.....C.G.GU...C.G...C..G...U.U...GU..UC....................................CGAUC...GUC...C...CUGACGAAGCC...C.GUACCUUCGGUAUGGAG..G..GC..AUGUU..CC.GUCA.GUUGGGU...AUUUA..UA.....................................................C..UU.C.C.G.A.A..GG.UCAG..AAG.UA.U..G..U.G...CC.G..A......AU..G...A..U...CG.C
   NC_007712.1       U.U.G.C...G.cC..GC....U......G.......C...U......G..G......A....A...G....A....G.....C.....A......G........A....A....A...A...A......A....G......A...G..A..U.....C......U...CC...ACCAC..C......................................................A..U..C.G....CUUU..UGU..U..C..G...CG.U..G...C..U..GA.A...C....GUG.A.....U.G.C..U..G...A.A...G....A..AC...AA....G.....U...C.....G...A..U.....C.....A..A.....A.G.AU...C.G...C..C...U.G...GU..AC....................................CGAUC...AUC...G...CCGACGAAGCC...C.GUACUUUCGGCAUGGAA..G..GU..CUGUU..CC.GCCA.GAUAGGC...AUCUA..CA.....................................................G..CC.C.C.A.A.C..GG.CCAG..CAG.UA.C..A..C.G...CC.G..C......AG..G...A..C...CG.C
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   NZ_LS483377.1     C.A.A.C...A..C..CC....A......G.......C...U......G..C......A....G...G....-....G.....C.....A......G........C....G...gC...G...A......U....C......G...C..G..G.....Cc...aaU...CC...ACCAC..C......................................................A..U..G.G....GCUU..CGU..G..C..G...CA.U..C...C..U..CA.C...C....AGC.C.....U.G.C..U..G...A.A...G....G..AC...CC....G.....G...A.....G...C..U.....Gg...gC..A.....A.G.CU...G.G...U..C...-.-...AU..UC....................................CGAUC...GUG...C...CCGAUGAAUCG...C.GCACCUUCGGCAUGGAA..G..GC..CUGUU..CC.GCCA.GAUCGGC...AUCCA..CU.....................................................C..CU.A.C.C.U.G..GG.UCAG..CUG.UA.C..A..C.C...CC.G..C......AG..G...A..C...G-.-
   NZ_LS483422.1     U.A.G.U...C..A..GC....U......U.......C...U......U..G......A....A...G....A....A.....C.....A......A........U....C....U...A...A......A....G......A...A..A..U.....U......U...CA...ACGAC..G......................................................A..U..C.G....CGUU..UGU..U..C..G...CG.U..U...U..U..GA.A...U....GUA.A.....U.G.U..U..G...A.A...A....A..AU...AA....C.....U...C.....U...A..U.....C.....A..A.....A.G.AG...C.G...U..U...U.A...GU..CC....................................CAAUU...AUU...G...CGGAUGAAGCA...C.GUACUUUCGGUAUGGAA..G..GC..UUGUU..CC.GUCA.AAUCGGU...AUUUA..UA.....................................................G..UC.C.G.A.A.A..GG.ACAG..CAA.UA.U..A..C.C...CC.G..C......AG..G...A..U...CG.U
   NZ_LS483429.1     U.A.A.A...G..C..AU....U......A.......U...U......A..G......A....A...G....A....A.....C.....A......A........C....C....U...C...G......U....G......G...U..A..U.....U......U...CA...ACCAC..U......................................................A..U..G.G....CGUU..UAC..U..C..G...UG.C..A...U..U..AA.A...C....AUC.U.....U.A.U..U..A...A.A...A....G..AU...AA....A.....A...A.....C...A..U.....C.....-..-.....-.-.--...-.G...-..-...-.-...--..--guaaaac.....................uaucguucCAAUG...AUU...G...CGGAUGAAGCG...C.GUACUUUCGGUAUGGAA..G..GU..UUAUU..CC.GUCA.AGUUGGU...AUUUA..UA.....................................................A..CC.C.A.C.A.U..GG.UCAA..AAC.UA.U..G..U.A...CC.U..U......CA..G...A..C...CG.U
   NZ_LS483443.1     C.U.C.U...G..C..GU....U......G.......U...U......A..G......A....A...-....-....-.....-.....-......G........C....G....C...A...A......C....C......A...C..G..U.....Ccg.auuU...CA...ACCAC..A......................................................A..U..G.G....CAUU..CGU..U..C..G...UU.U..C...U..U..AA.A...U....ACG.U.....U.G.U..U..A...A.A...AgacaA..AA...AU....G.....U...G.....G...G..U.....C.....A..A....cA.C.AU...U.G...U..-...-.-...--..GC....................................CAAUC...GUG...G...CAGACGAAGCG...C.GUACUUUCGGUAUGGAA..G..GC..UUAUU..CC.GUCA.AAUCGGU...AUUUA..CA.....................................................A..CC.C.A.C.A.U..GG.UCAA..AAU.UA.U..G..U.C...CC.A..U......CC..G...A..C...CG.C
   NZ_LS483458.1     U.A.A.A...G..C..AU....U......A.......U...U......A..G......A....A...G....A....A.....C.....A......A........C....C....U...C...G......U....G......G...U..A..U.....U......U...CA...ACCAC..U......................................................A..U..G.G....CGUU..CAC..U..C..G...UG.C..A...U..U..AA.A...C....AUC.U.....U.A.U..U..A...A.A...A....G..AU...AA....-.....-...-.....-...-..-.....-.....A..A.....A.C.AU...U.G...G..-...-.-...--..--uaaaacu......................aucguucCAAUG...AUU...G...CUGAUGAAGCG...C.GUACUUUCGGUAUGGAA..G..GU..UUGUU..CC.GUCA.AGUUGGU...AUUUA..UA.....................................................A..CC.C.A.C.A.U..GG.UCAA..AAC.UA.U..G..U.U...CC.U..U......CA..G...A..U...CG.U
   NZ_LS483468.1     C.G.A.C...G..UggUC....C......G.......C...A......A..G......G....G...G....U....C.....G.....G......G........C....A....A...G...C......A....G.....gA...A..G..U.....C......G...CC...ACCAC..C......................................................A..U..G.G....CUGC..GGU..G..C..G...UG.U..G...C..U..CA.A...G....GAA.C.....U.G.U..U..G...C.G...C....G..AC...AA....G.....G...A.....G...A..U.....C.....G..G.....C.A.AG...C.G...C..A...U.C...GU..GC....................................CGAUC...AUC...C...CCGACGAGGCU...C.GCACGUUCGGUAUGGAC..U..CG..UGGUU.cCC.GUCG.CUGAAG-...AUCUA..CA.....................................................A..CC.G.C.A.A.C..GG.CCAG..UUG.UA.C..A..CgU...CC.G..-......UC..G...A..C...GC.C
   NZ_LS483470.1     U.A.G.C...G..C..GC....U......G.......C...U......G..G......A....A...G....A....G.....C.....A......G........A....A....C...A...A......A....G......A...A..A..U.....U......U...CU...ACCAC..U......................................................A..U..C.G....CUUU..CGU..U..C..G...CG.C..A...C..U..GA.A...C....GUG.A.....U.G.C..U..G...A.A...A....G..AC...GC....U.....U...C.....U...A..U.....U.....G..G.....A.C.CG...C.G...U..C...U.G...GU..GC....................................CGAUU...CUG...G...CAGAUGAAGCC...C.GUACCUUUGGUAUGGAA..G..GU..CUGUU..CC.GUCA.AAUCGGU...AUCUA..UA.....................................................G..CC.C.G.A.A.A..GG.CCAG..CAG.UA.U..G..U.A...CC.G..C......AG..G...A..C...CG.C
   NZ_LT615228.1     C.A.C.C...A..-..-U....U......G.......U...U......A..G......A....A...G....C....A.....A.....C......G.......aC....U....G...A...A......G....Gcc.gugA...A..A..U.....U......U...CU...ACGAC..U......................................................A..U..G.G....CGUU..UGU..G..C..G...CA.U..G...C..U..CA.A...U....ACC.G.....U.A.G..U..G...C.G...C....G..AC...AA....G.....A...C.....U...A..U.....C.....G..G.....C.A.AA...C.G...A..G...U.A...GU..UC....................................CAAUC...GUU...C...CAGAUGAAUCU...C.GUACCUUUGGUAUGGAG..G..GU..AUGUU..CC.GUCA.ACUUGGU...AUUUG..GA.....................................................A..UC.A.A.C.U.C..GG.UCAG..CUU.UA.C..A..C.G...CC.A..G......AA..G...A..U...CA.U
   NZ_LT615367.1     U.A.G.C...U..C..GC....U......G.......U...U......A..G......A....A...G....A....A.....C.....A......G........A....C....C...A...A......A....G......A...A..A..U.....U......U...CG...ACCAC..G......................................................A..U..U.G....CAUU..CGU..G..C..G...UG.C..G...C..U..GA.A...U....GUG.A.....U.G.C..U..G...A.A...G....A..AC...CC....G.....U...C.....G...A..U.....U.....A..A.....A.G.AC...C.G...U..C...U.G...GU..GC....................................CGAUC...AUU...G...CCGAUGAAGCG...C.GUACCUUCGGGAUGGAA..G..GU..CUGUU..CC.GUCA.GAUUGGU...AUCUA..CA.....................................................G..CC.C.G.A.A.C..GG.UCAG..CAG.UA.U..A..C.C...CC.G..C......AG..G...A..U...CG.U
   NZ_LT855380.1     G.G.C.C...A..-..--....U......C.......C...U......U..G......A....C...G....G....U.....U.....C......G........G....G....C...G...Ac...cgC....G......A...A..A..U.....C......U...CC...ACCAC..C......................................................A..U..G.G....CGUU..CGU..G..C..G...CA.U..C...C..U..GA.C...C....CAA.C.....U.G.G..U..C...A.A...G....G..AC...AA....G.....G...A.....A...A..U.....C.....G..G.....C.C.AG...C.G...U..A...U.C...GU..GC....................................CGAUC...AUC...C...CGGACGAAGCC...C.GUACCUUCGGUAUGGAA..G..GC..AUGUU..CC.GCCA.GCUGGGC...AUCUA..UU.....................................................C..CU.C.C.G.U.C..GG.CCAG..CU-.--.-..-..-.-...--.-..-......--..-...-..-...--.-
   NZ_LT897836.1     U.G.C.C...C..C..CC....U......C.......U...U......A..G......G....A...G....A....G.....C.....A......A........A....A....G...A...A......A....G......A...A..A..U.....A......U...CU...ACUAC..U......................................................A..U..C.G....CUUU..UGU..A..C..G...UG.U..G...C..U..AA.A...C....GUA.A.....U.G.C..U..G...A.A...G....A..AU...AC....A.....U...C.....G...A..U.....C.....A..A.....G.G.AU...C.G...A..U...U.G...GU..UC....................................CGAUU...GUC...G...CCGACGAAGCU...C.GUACCUUUGGUAUGGAA..G..GA..CUGUU..CC.GCCA.AAUAGGC...AUUUA..UA.....................................................G..CC.C.U.C.A.C..GG.CCAG..CAG.UA.U..A..C.U...CC.A..C......AG..G...A..C...CG.C
   NZ_LT906434.1     C.A.G.C...U..G..CA....A......A.......C...C......A..G......U....G...G....-....C.....G.....A......-........-....-....C...C...G......C....G......A...G..U..U.....C......U...CU...ACCAC..C......................................................A..U..G.G....CAUU..CGU..G..C..G...UA.U..C...C..U..UU.C...U....ACC.U.....U.G.C..U..G...A.A...A....G..AC...AA....A.....C...A.....A...A..U.....C.....G..G.....C.A.AA...C.G...C..A...U.C...GU..AC....................................CUAUC...GUA...C...CCGACGAAAGC...C.GCACCUUCGGUAUGGAA..G..GU..AUGUU..CC.GCCA.AUACGGU...AUUUG..GA.....................................................A..UC.C.G.A.A.A..GG.CCAA..CAA.UA.C..A..C.C...CC.G..C......AA..G...A..U...A-.-
   NZ_LT906435.1     C.G.A.C...G..C..AC....U......G.......C...U......C..A......-....A...G....G....C.....G.....A......C........C....G....C...C...G......A....A......G...G..C..C.....G......U...--...-----..-gagauuuc...................................gacgacgau..G..G..C.G....UUCG..UGC..G..U..A...U-.-..U...C..U..CA.A...C....GUG.C.....U.G.C..U..C...A.A...G....G..AC...AA....G.....G...C.....G...C..U.....G.....G..G.....U.C.AA...C.G...C..A...U.C...GU..GC....................................CUAUC...GUG...C...CGGAUGAGUCA...C.GCACGUUCGGUAUGGAA..G..GC..UUGUU..CC.GCCA.GAUCGGU...AUCUG..GA.....................................................G..CC.A.G.G.U.C..GG.CCAG..CGC.UA.C..A..U.C...CC.G..C......AA..G...A..U...CA.G
   NZ_LT906448.1     G.A.G.U...U..U..GC....A......C.......A...A......U..U......A....U...U....U....G.....A.....A......G........C....G....C...A...A......G....C......A...C..G..U.....Cca.auuU...CU...ACCAC..A......................................................A..U..G.G....CAUU..UGU..U..C..G...UU.C..A...U..U..AA.A...C....GUA.U.....U.A.U..U..G...A.A...A....A..AC...AA....A.....U...C.....U...G..U.....G.....G..G.....U.A.AA...C.G...U..A...U.U...GU..UC....................................CAAUU...CUU...G...CAGAUGAAGCA...C.GUACAUUCGGUAUGGAA..G..GC..UUAUU..CC.GUCA.AAUUGGU...AUUUA..CA.....................................................A..CC.C.A.U.A.C..GG.UCAA..AAU.UA.U..A..C.U...CC.G..C......AA..G...A..C...CG.U
   NZ_LT906451.1     A.A.G.C...A..C..G-....-......-.......-...-......G..G......U....-...-....-....-.....-.....-......G........A....G....C...G...-......U....G......A...G..A..U.....C......U...CU...ACGAC..U......................................................A..U..G.G....CUUU..UGU..U..C..G...UA.U..A...U..U..AU.C...U....ACG.C.....U.G.C..U..U...A.A...A....G..AC...AA....G.....G...A.....A...U..U.....G.....G..G.....U.A.AA...A.G...A..A...U.C...GU..CC....................................CCAUU...GUG...C...CAGAUGAAUGC...C.GAACAUUCGGGAUGGAG..G..GU..UUGUU..UC.GCCA.GAUUGGU...AUCUA..CU....................................................cA..CC.C.G.U.A.-..GG.UCAG..CUA.UA.U..A..C.U...CC.U..G......UC..G..aU..C...--.-
   NZ_LT906469.1     C.G.G.C...G..G..UC....A......A.......-...-......G..A......A....G...G....G....A.....U.....C......G........G....G....C...A...A......Cc.agG......A...G..G..U.....C......G...CC...ACCAC..C......................................................A..U..G.G....CGAC..CGU..G..C..G...GG.U..G...U..U..CA.A...A....GAA.C.....U.G.U..U..G...C.G...G....G..AC...AA....G.....G...A.....A...A..U.....C.....G..G.....G.C.CG...C.G...U..C...U.G...GU..CC....................................CGAUC...AUC...C...CCGACGAGGCG...C.GCACCUUCGGGAUGGAC..U..CG..UGGUU.cCC.GUCG.UUGAAG-...AUCUA..CA.....................................................A..CC.G.C.A.A.C..GG.GCAG..CUC.UA.C..A..C.C..uCC.G..U.....cGA..U...G..C...CG.A
   NZ_LT906479.1     C.A.G.C...U..C..GC....U......G.......C...U......G..G......A....A...G....A....G.....C.....A......G........A....A....C...A...A......A....G......A...G..A..U.....C......U...CC...ACCAC..U......................................................A..U..C.G....CCUU..CGU..G..C..G...UG.C..C...C..U..GA.A...C....GUG.A.....U.G.C..U..G...A.A...G....A..AC...AA....G.....U...C.....G...A..U.....C.....A..A.....A.G.AU...C.G...C..C...U.G...GU..GC....................................CCAUC...AUC...G...CCGACGAAGCG...C.GUACCUUCGGUAUGGAA..G..GC..CUGUU..CC.GUCA.GAUCGGC...AUCUA..CA.....................................................G..CC.C.U.A.A.C..GG.CCAG..CAG.UA.C..A..C.C...CC.G..C......AG..G...A..C...CG.C
   NZ_LT906483.1     C.G.G.U...G..C..GC....A......A.......G...G......G..G......U....C...G....G....G.....C.....A......A........C....C...aG...G...A......G....G......U...G..G..C.....G......A...CC...ACCAU..G......................................................G..C..C.A....CCGU..CCG..G..A..C...CU.U..C...C..G..GG.A...A....GUG.U.....U.G.C.gC..G...A.C...A....A..GG...AG....C.....U...C.....G...G.cU.....G.....G..C.....G.G.AU...C.G...U..C...-.-...--..-C....................................CGAUC...AUC...C...CGGACGAGGCG...C.GCACCUUCGGGAUGGAC..U..CG..UGGUU.cCC.GUCG.CUGAAG-...AUCUA..CA.....................................................A..CC.C.C.A.A.C..GG.UCAG..CUG.UA.C..A..C.G...UC.G..G......UC..Ga.cG..C...C-.-
   NZ_LT907988.1     C.A.A.G...G..C..CG....U......G.......C...U......G..G......A....A...C...cC....A.....C.....C......G........C....G....G...A...A......G....G......C...-..-..-.....-......-...--...-----..-cgcgaaaucu...............................cgaccacgcaa..-..-..-.G....CCUU..CGU..G..C..G...CG.U..G...C..U..GA.A...C....CAG.G.....U.C.C..U..G...C.G...C....G..AC...AA....G.....G...-.....-...-..-.....-.....-..A.....C.G.UU...G.G...U..C...C.-...--..--gcgcg.........................ucgugcCCAUC...CUG...G...CUGACGAAUCG...C.GCACCUUCGGCAUGGAA..G..GC..CUGUU..CC.GCCA.GAUCGGC...AUCUA..UG....................................................cG..CC.G.G.A.-.A..GG.CCAG..AAG.UA.C..G..U.G...CC.G..GucgacaAG..G...A..C...CA.G
   NZ_OU343031.1     U.U.A.G...G..G..GC....A......G.......C...G......G..C......G....A...A....-....-.....-.....-......G........G....A....C...G...G......-....G......A...G..A..U.....U......U...CG...ACUAC..G......................................................A..U..G.G....CGUU..UGU..G..C..G...GA.U..U...U..U..AA.G...U....AUC.C.....U.C.U..U..A...A.A...G....G..AU...AA....G.....U...C.....U...C..U.....C.....G..G.....U.A.AA...C.G...A..A...U.A...GU..GC....................................CUAUC...GUG...C...CAGACGAAUCG...C.GAACCUUCGGCAUGGAA..G..GG..CUAUU..CC.GUCA.GAUUGGU...AUCUG..GA.....................................................A..UC.A.A.G.A.G..GG.ACAG..AAG.UA.U..G..U.U...CC.A..G......AA..Ga.cU..C...UG.-
   NZ_OU594967.1     U.A.G.C...G..C..AC....U......G.......U...U......A..C......A....A...G....A....A.....C.....A......G........A....A....A...A...A......A....G......A...C..A..U.....C......U...CG...ACCAC..G......................................................A..U.uG.G....C-UU..CGU..U..C..G...AU.C..U...C..U..GA.A...U....GUU.C.....U.U.C..U..G...A.A...A....A..AC...AA....A.....G...G.....A...C..U.....U.....A..A.....A.G.AU...C.A...C..A...U.C...GU..AC....................................CUAUU...AUA...G...CCGACGAAGCU...C.GUACCUUUGGUAUGGAA..G..GU..UUGUU..CC.GCCA.GAUUGGU...AUUUA..CA.....................................................A..CC.C.U.G.G.G..GG.UCAG..CAA.UA.U..A..C.A...CC.G..C......AA..G...A..C...CG.C
   NZ_OU907312.1     C.A.A.U...C..-..CC....U......A.......U...U......A..A......C....G...G....A....A.....C.....A......A........A....A....C...C...G......U....G......A...G..A..U.....C......U...CG...ACUAC..C......................................................C..U..G.G....CCUU..UGU..U..C..G...GG.U..C...U..U..GA.A...U....G--.-.....U.A.U..U..G...C.U...G....A..AA...CA....G.....C...C.....-...-..-.....-.....-..-.....-.-.--...-.-...-..-...-.-...--..--cacgcuggguccac........gcauugugccuauu-----...AUU...G...CCGACGAAGCG...C.GCACCUUUGGAAUGGAG..G..GG..CUGUU..CC.GCCA.AAUUGGC...AUUUA..UA.....................................................A..CC.C.A.C.A.G..GG.GCAG..CAG.UA.U..A..C.C...CC.G..U......CC..G...A..U...CG.U
   NZ_OU912926.1     U.G.A.A...G..U..GU....U......G.......C...U......U..A......A....A...G...gC....A.....C.....C......G........A....A....G...A...G......-....-cg..ugA...G..A..U.....U......U...CC...ACCAC..C......................................................A..U..G.G....CUUU..UGU..A..C..G...CA.U..G...C..U..GG.G...C....AUU.C.....U.G.G..U..G...A.A...G....G..AU...AA....A.....A...A.....U...A..Ua...gG.....C..A.....A.G.CU...C.G...-..-...U.G...GU..GC....................................CCAUC...GUG...C...CGGACGAAUCA...C.GCACUUUCGGCAUGGAA..G..GA..UUGUU..CC.GCCA.GCUCAGC...AUUUU..U-.....................................................U..CU.C.A.A.GuU..GG.CCAG..CUA.UA.U..A..C.A...CC.G..C......AG..Ga.uG..C...C-.-
   NZ_OW485601.1     C.G.A.G...G..G..AC....A......A.......U...U......G..A......A....G...G....C...gA.....C.....C......G........A....A....G...G...G......-....-cg..gcA...G..A..U.....C......U...CC...ACCAC..C......................................................A..U..G.G....CCUU..CGU..C..C..G...GG.U..G...C..U..CA.A...C....ACG.C.....U.G.C..U..G...C.G...C....G..AC...AA....G.....A...A.....G...A..U.....U.....G..G.....C.C.GG...C.G...C..A...U.C...GU..GC....................................CGAUC...GUG...C...CCGACGAAAGC...C.GCACCUUCGGCAUGGAG..G..GG..AUGUU..CC.GCCA.GUUCGGC...AUCUU..CA.....................................................G..CC.A.G.G.U.G..GG.CCAG..C--.UG.U..A..C.Cg.gCC.G..G......AG..G...A..U...GC.C


   Structure         (.(.(.(...(..(..((.............................................(...(....(....(.....(.....(......(........(....(....(...(...(......(....(..........(..(..(...................................................................................)..)..)......))))...))..)..)......)).)..)...)..)..............))).......).).)..)..)..........................................................................(.((...(.(..........................................................))))).....................(((.....((.(((.(((...((...........(((((..((.((.......(((.................................................................)..)).......).)..))...))..)))..........).)...)).).........))..)...)..)...)).)


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pdhR-aceE-aceF-lpd



Position: 2445-2614, Conformation: #1







97% 90% 75% 50% Nucleotide present N N N Nucleotide identify E < 0.1 Base-pair covariation E < 0.05 Helix-level covariation 97% 90% 75%

R R R R R R G A R U Y U C A C A C A U G G C U U Y G U C G Y R Y Y U R Y R U R U R R R A Y A A R U R R R R Y R U G U C C A U Y R U C G A Y G A R R C C G Y A C Y U U Y G G Y A U G G A R G G Y U R U U C C G Y C A R U G G Y A U Y U A Y Y C G G Y C A G U A Y R Y C C R G A Y R 5'