pdhR-aceE-aceF-lpd



Position: 2445-2614, Conformation: #0







DMS reactivity > 1.0 0.0 0.4 0.7 G/U/No data
Position: 0 (position.label in template: 0.5')5' Position: 1 (position.label in template: 1.U) Reactivity: nanU Position: 2 (position.label in template: 2.U) Reactivity: nanU Position: 3 (position.label in template: 3.C) Reactivity: nanC Position: 4 (position.label in template: 4.G) Reactivity: nanG Position: 5 (position.label in template: 5.G) Reactivity: nanG Position: 6 (position.label in template: 6.C) Reactivity: nanC Position: 7 (position.label in template: 7.G) Reactivity: nanG Position: 8 (position.label in template: 8.C) Reactivity: nanC Position: 9 (position.label in template: 9.G) Reactivity: nanG Position: 10 (position.label in template: 10.C) Reactivity: nanC Position: 11 (position.label in template: 11.U) Reactivity: nanU Position: 12 (position.label in template: 12.G) Reactivity: nanG Position: 13 (position.label in template: 13.U) Reactivity: nanU Position: 14 (position.label in template: 14.U) Reactivity: nanU Position: 15 (position.label in template: 15.G) Reactivity: nanG Position: 16 (position.label in template: 16.G) Reactivity: nanG Position: 17 (position.label in template: 17.A) Reactivity: nanA Position: 18 (position.label in template: 18.A) Reactivity: nanA Position: 19 (position.label in template: 19.G) Reactivity: nanG Position: 20 (position.label in template: 20.A) Reactivity: nanA Position: 21 (position.label in template: 21.G) Reactivity: nanG Position: 22 (position.label in template: 22.C) Reactivity: nanC Position: 23 (position.label in template: 23.A) Reactivity: nanA Position: 24 (position.label in template: 24.G) Reactivity: nanG Position: 25 (position.label in template: 25.A) Reactivity: nanA Position: 26 (position.label in template: 26.G) Reactivity: nanG Position: 27 (position.label in template: 27.C) Reactivity: nanC Position: 28 (position.label in template: 28.A) Reactivity: nanA Position: 29 (position.label in template: 29.A) Reactivity: nanA Position: 30 (position.label in template: 30.A) Reactivity: nanA Position: 31 (position.label in template: 31.G) Reactivity: nanG Position: 32 (position.label in template: 32.A) Reactivity: nanA Position: 33 (position.label in template: 33.G) Reactivity: nanG Position: 34 (position.label in template: 34.A) Reactivity: nanA Position: 35 (position.label in template: 35.U) Reactivity: nanU Position: 36 (position.label in template: 36.C) Reactivity: nanC Position: 37 (position.label in template: 37.U) Reactivity: nanU Position: 38 (position.label in template: 38.C) Reactivity: 0.5C Position: 39 (position.label in template: 39.U) Reactivity: nanU Position: 40 (position.label in template: 40.A) Reactivity: 0.5A Position: 41 (position.label in template: 41.C) Reactivity: 0.5C Position: 42 (position.label in template: 42.C) Reactivity: 0C Position: 43 (position.label in template: 43.A) Reactivity: 0.5A Position: 44 (position.label in template: 44.C) Reactivity: 1C Position: 45 (position.label in template: 45.U) Reactivity: nanU Position: 46 (position.label in template: 46.A) Reactivity: 0.5A Position: 47 (position.label in template: 47.U) Reactivity: nanU Position: 48 (position.label in template: 48.C) Reactivity: 0C Position: 49 (position.label in template: 49.G) Reactivity: nanG Position: 50 (position.label in template: 50.C) Reactivity: 1C Position: 51 (position.label in template: 51.U) Reactivity: nanU Position: 52 (position.label in template: 52.U) Reactivity: nanU Position: 53 (position.label in template: 53.U) Reactivity: nanU Position: 54 (position.label in template: 54.C) Reactivity: 1C Position: 55 (position.label in template: 55.G) Reactivity: nanG Position: 56 (position.label in template: 56.U) Reactivity: nanU Position: 57 (position.label in template: 57.U) Reactivity: nanU Position: 58 (position.label in template: 58.C) Reactivity: 0C Position: 59 (position.label in template: 59.G) Reactivity: nanG Position: 60 (position.label in template: 60.U) Reactivity: nanU Position: 61 (position.label in template: 61.G) Reactivity: nanG Position: 62 (position.label in template: 62.C) Reactivity: 0C Position: 63 (position.label in template: 63.U) Reactivity: nanU Position: 64 (position.label in template: 64.C) Reactivity: 0C Position: 65 (position.label in template: 65.U) Reactivity: nanU Position: 66 (position.label in template: 66.G) Reactivity: nanG Position: 67 (position.label in template: 67.A) Reactivity: 0A Position: 68 (position.label in template: 68.A) Reactivity: 1A Position: 69 (position.label in template: 69.C) Reactivity: 1C Position: 70 (position.label in template: 70.G) Reactivity: nanG Position: 71 (position.label in template: 71.U) Reactivity: nanU Position: 72 (position.label in template: 72.G) Reactivity: nanG Position: 73 (position.label in template: 73.A) Reactivity: 0A Position: 74 (position.label in template: 74.U) Reactivity: nanU Position: 75 (position.label in template: 75.G) Reactivity: nanG Position: 76 (position.label in template: 76.C) Reactivity: 1C Position: 77 (position.label in template: 77.U) Reactivity: nanU Position: 78 (position.label in template: 78.G) Reactivity: nanG Position: 79 (position.label in template: 79.A) Reactivity: 1A Position: 80 (position.label in template: 80.A) Reactivity: 0.5A Position: 81 (position.label in template: 81.G) Reactivity: nanG Position: 82 (position.label in template: 82.A) Reactivity: 1A Position: 83 (position.label in template: 83.A) Reactivity: 0A Position: 84 (position.label in template: 84.C) Reactivity: 0C Position: 85 (position.label in template: 85.A) Reactivity: 0.5A Position: 86 (position.label in template: 86.A) Reactivity: 0.5A Position: 87 (position.label in template: 87.G) Reactivity: nanG Position: 88 (position.label in template: 88.U) Reactivity: nanU Position: 89 (position.label in template: 89.C) Reactivity: 0C Position: 90 (position.label in template: 90.G) Reactivity: nanG Position: 91 (position.label in template: 91.A) Reactivity: 0A Position: 92 (position.label in template: 92.U) Reactivity: nanU Position: 93 (position.label in template: 93.C) Reactivity: 0C Position: 94 (position.label in template: 94.A) Reactivity: 0.5A Position: 95 (position.label in template: 95.A) Reactivity: 1A Position: 96 (position.label in template: 96.A) Reactivity: 1A Position: 97 (position.label in template: 97.G) Reactivity: nanG Position: 98 (position.label in template: 98.A) Reactivity: 0A Position: 99 (position.label in template: 99.U) Reactivity: nanU Position: 100 (position.label in template: 100.C) Reactivity: 0C Position: 101 (position.label in template: 101.G) Reactivity: nanG Position: 102 (position.label in template: 102.U) Reactivity: nanU Position: 103 (position.label in template: 103.C) Reactivity: 0C Position: 104 (position.label in template: 104.U) Reactivity: nanU Position: 105 (position.label in template: 105.G) Reactivity: nanG Position: 106 (position.label in template: 106.G) Reactivity: nanG Position: 107 (position.label in template: 107.U) Reactivity: nanU Position: 108 (position.label in template: 108.A) Reactivity: 1A Position: 109 (position.label in template: 109.C) Reactivity: 0C Position: 110 (position.label in template: 110.C) Reactivity: 0C Position: 111 (position.label in template: 111.G) Reactivity: nanG Position: 112 (position.label in template: 112.A) Reactivity: 1A Position: 113 (position.label in template: 113.U) Reactivity: nanU Position: 114 (position.label in template: 114.C) Reactivity: 0C Position: 115 (position.label in template: 115.A) Reactivity: 0A Position: 116 (position.label in template: 116.U) Reactivity: nanU Position: 117 (position.label in template: 117.C) Reactivity: 0C Position: 118 (position.label in template: 118.G) Reactivity: nanG Position: 119 (position.label in template: 119.C) Reactivity: 0C Position: 120 (position.label in template: 120.C) Reactivity: 0C Position: 121 (position.label in template: 121.G) Reactivity: nanG Position: 122 (position.label in template: 122.A) Reactivity: 1A Position: 123 (position.label in template: 123.C) Reactivity: 0C Position: 124 (position.label in template: 124.G) Reactivity: nanG Position: 125 (position.label in template: 125.A) Reactivity: 0A Position: 126 (position.label in template: 126.A) Reactivity: 0A Position: 127 (position.label in template: 127.G) Reactivity: nanG Position: 128 (position.label in template: 128.C) Reactivity: 0C Position: 129 (position.label in template: 129.G) Reactivity: nanG Position: 130 (position.label in template: 130.C) Reactivity: 0C Position: 131 (position.label in template: 131.G) Reactivity: nanG Position: 132 (position.label in template: 132.U) Reactivity: nanU Position: 133 (position.label in template: 133.A) Reactivity: 0.5A Position: 134 (position.label in template: 134.C) Reactivity: 0.5C Position: 135 (position.label in template: 135.U) Reactivity: nanU Position: 136 (position.label in template: 136.U) Reactivity: nanU Position: 137 (position.label in template: 137.U) Reactivity: nanU Position: 138 (position.label in template: 138.C) Reactivity: 0C Position: 139 (position.label in template: 139.G) Reactivity: nanG Position: 140 (position.label in template: 140.G) Reactivity: nanG Position: 141 (position.label in template: 141.U) Reactivity: nanU Position: 142 (position.label in template: 142.A) Reactivity: 0.5A Position: 143 (position.label in template: 143.U) Reactivity: nanU Position: 144 (position.label in template: 144.G) Reactivity: nanG Position: 145 (position.label in template: 145.G) Reactivity: nanG Position: 146 (position.label in template: 146.A) Reactivity: 0.5A Position: 147 (position.label in template: 147.A) Reactivity: 0.5A Position: 148 (position.label in template: 148.G) Reactivity: nanG Position: 149 (position.label in template: 149.G) Reactivity: nanG Position: 150 (position.label in template: 150.U) Reactivity: nanU Position: 151 (position.label in template: 151.C) Reactivity: 0C Position: 152 (position.label in template: 152.U) Reactivity: nanU Position: 153 (position.label in template: 153.G) Reactivity: nanG Position: 154 (position.label in template: 154.U) Reactivity: nanU Position: 155 (position.label in template: 155.U) Reactivity: nanU Position: 156 (position.label in template: 156.C) Reactivity: 0.5C Position: 157 (position.label in template: 157.C) Reactivity: 0C Position: 158 (position.label in template: 158.G) Reactivity: nanG Position: 159 (position.label in template: 159.U) Reactivity: nanU Position: 160 (position.label in template: 160.C) Reactivity: 0C Position: 161 (position.label in template: 161.A) Reactivity: 0.5A Position: 162 (position.label in template: 162.G) Reactivity: nanG Position: 163 (position.label in template: 163.A) Reactivity: 1A Position: 164 (position.label in template: 164.U) Reactivity: nanU Position: 165 (position.label in template: 165.U) Reactivity: nanU Position: 166 (position.label in template: 166.G) Reactivity: nanG Position: 167 (position.label in template: 167.G) Reactivity: nanG Position: 168 (position.label in template: 168.U) Reactivity: nanU Position: 169 (position.label in template: 169.A) Reactivity: 0A Position: 170 (position.label in template: 170.U) Reactivity: nanU Position: 171 (position.label in template: 171.U) Reactivity: nanU Position: 172 (position.label in template: 172.U) Reactivity: nanU Position: 173 (position.label in template: 173.A) Reactivity: 1A Position: 174 (position.label in template: 174.C) Reactivity: nanC Position: 175 (position.label in template: 175.A) Reactivity: nanA Position: 176 (position.label in template: 176.G) Reactivity: nanG Position: 177 (position.label in template: 177.C) Reactivity: nanC Position: 178 (position.label in template: 178.C) Reactivity: nanC Position: 179 (position.label in template: 179.C) Reactivity: nanC Position: 180 (position.label in template: 180.G) Reactivity: nanG Position: 181 (position.label in template: 181.A) Reactivity: nanA Position: 182 (position.label in template: 182.A) Reactivity: nanA Position: 183 (position.label in template: 183.C) Reactivity: nanC Position: 184 (position.label in template: 184.G) Reactivity: nanG Position: 185 (position.label in template: 185.G) Reactivity: nanG Position: 186 (position.label in template: 186.U) Reactivity: nanU Position: 187 (position.label in template: 187.C) Reactivity: nanC Position: 188 (position.label in template: 188.A) Reactivity: nanA Position: 189 (position.label in template: 189.G) Reactivity: nanG Position: 190 (position.label in template: 190.C) Reactivity: nanC Position: 191 (position.label in template: 191.A) Reactivity: nanA Position: 192 (position.label in template: 192.G) Reactivity: nanG Position: 193 (position.label in template: 193.U) Reactivity: nanU Position: 194 (position.label in template: 194.A) Reactivity: nanA Position: 195 (position.label in template: 195.C) Reactivity: nanC Position: 196 (position.label in template: 196.A) Reactivity: nanA Position: 197 (position.label in template: 197.C) Reactivity: nanC Position: 198 (position.label in template: 198.C) Reactivity: nanC Position: 199 (position.label in template: 199.C) Reactivity: nanC Position: 200 (position.label in template: 200.C) Reactivity: nanC Position: 201 (position.label in template: 201.G) Reactivity: nanG Position: 202 (position.label in template: 202.C) Reactivity: nanC Position: 203 (position.label in template: 203.A) Reactivity: nanA Position: 204 (position.label in template: 204.G) Reactivity: nanG Position: 205 (position.label in template: 205.G) Reactivity: nanG Position: 206 (position.label in template: 206.A) Reactivity: nanA Position: 207 (position.label in template: 207.C) Reactivity: nanC Position: 208 (position.label in template: 208.C) Reactivity: nanC Position: 209 (position.label in template: 209.G) Reactivity: nanG Position: 210 (position.label in template: 210.C) Reactivity: nanC Position: 211 (position.label in template: 211.3')3' 10 20 30 50 100 150 200


pdhR-aceE-aceF-lpd



Position: 2445-2614, Conformation: #0







Retained alignments:


   NC_002977.6       U.C...G.....A....GA.C...G...A.........U.....Gcu..gaA......A....A..G....Cu..cG......G.....A....G...G......A...C...C...G....A....G......A.A..A......U.....G.....UCC...ACCAC..CA.............................................................U..GG...UG..UU..C...G.UCC...G.....C..C.UG...C..U.....G......U.....C......G...U.C...C.C..U...G....C...U.G.......C.G...G......GA.C....A.A.-....---...-.--...-.-.-ggcgcugg.................................gccgcuacg.---...---...-...U.G.GUGCCGAU...CGUGCC...C.GACGA.GGC.C.CGCACCUUCGGCAUGGA.GG.G.C..CUG.UU..CCGG....CAA.UACGGC...AUCUA..UU...............................................C..CU.C.C.G.U.C..GG.CC..AG..CU..CUA..C..G..A.A.CCG.....C....A....G..Ga....cG..CCG
   NC_004347.2       -.-...-.....-....--.-...-...U.........U.....A......C......A....G..G....G....C......U.....C....U...Aa...cgG...C...C...G....U....G......A.A..A......U.....U.....UCG...UCAAC..UA.............................................................U..GG...CG..UU..U...G.UUC...G.....C..G.UA...C..U.....G......A.....C......U...G.C...A.C..U...G....U...U.A.......A.A...A......GA.C....A.A.G....AAA...A.UU...-.-.-ggc............................................aaa.AAU...---...A...U.U.GUGCCAAU...UAUCCC...U.GACGA.AGC.G.CGUACUUUCGGUAUGGA.AG.G.U..CUG.UU..CCGC....CAA.GUGGGU...AUUUA..UG...............................................C..UC.A.C.G.A.A..GG.CC..AA..AA..AUA..C..G..U.A.CCG.....C....A....A..G......A..CUC
   NC_004578.1       A.C...G.....-....GC.U...C...-.........-.....-......-......-....G..G....-....G......C.....G....-...-......A...C...C...G....C....G......A.A..A......U.....U.....UCU...ACCAC..CA.............................................................U..GG...CC..UU..C...G.UGC...G.....C..A.-U...C..C.....U......G.....A......C...G.C...A.A.cU...G....G...U.C.......A.A...G......GA.C....A.A.-....---...-.--...-.-.-ggaagucg.................................gucagcgca.---...---...-...U.C.GUGCCGAU...CAUCCC...U.GACGA.AGC.A.CGUACCUUCGGCAUGGA.AG.G.C..AUG.UU..CCGC....CAG.UUGGGC...AUCUA..CU..............................................cG..UC.-.G.G.U.C..GG.CC..AG..CU..CUA..CgaG..C.C.AGU.....C....G....A..U......-..---
   NC_004603.1       A.G...C.....C....AC.U...A...C.........U.....A......G......A....A..G....A....A......C.....A....G...A......A...G...C...G....U....G......A.U..A......U.....C.....UCU...UCUAC..UA.............................................................U..GG...CA..UU..C...G.UAC...G.....U..G.CA...C..U.....U......A.....A......C...G.U...U.C..U...A....C...U.U.......A.A...G......AA.C....A.A.-....---...-.--...-.-.-gaacauug.................................guaagaaca.---...---...-...U.C.GUUCCUAU...CAUUGC...U.GACGA.AGC.G.CGUACAUUCGGUAUGGA.AG.G.U..CUG.UU..CCGU....CAA.AUCGGU...AUUUA..CA...............................................A..CC.C.G.C.A.C..GG.CC..AG..AA..CUA..C..A..C.A.CCA.....C....A....A..G......A..CCG
   NC_005126.1       G.U...G.....C....GU.U...G...C.........U.....G......G......A....A..G....A....A......C.....A....G...A......A...C...A...A....A....G......A.G..A......U.....U.....UCU...ACCAC..UA.............................................................U..CG...CU..UU..U...G.UUC...G.....U..G.CC...U..U.....G......A.....A......C...G.U...G.A..U...G....U...U.G.......A.A...G......AA.C....A.A.A....UCA...A.UC...A.A.A...................................................GAU...CGU...C...U.G.GUGCCAAU...CAUUGC...U.GAUGA.AGC.G.CGUACAUUUGGUAUGGA.AG.G.U..CUG.UU..CCGU....CAG.AUCGGC...AUCUA..CA...............................................G..CU.C.U.A.A.C..GG.CC..AG..CA..GUA..U..A..C.U.CCG.....C....A....G..G......A..CCG
   NC_005966.1       -.-...-.....-....--.-...-...U.........U.....U......A......A....G..C....G....G......U.....A....G...U......A...A...C...G....-....-......-.-..-......-.....-.....---...-----..--gaaaagaacaauccacc.......................acgauggugaugguacg....-..--...--..U-..-...U.UGA...U.....U..G.CU...G..C.....U......U.....-......-...-.-...-.-..U...A....C...U.U.......A.A...A......GA.A....A.A.A....GCA...A.UU...A.A.A...................................................GAC...CGU...G...U.U.GUGCCAAU...UGUUCC...A.GAUGA.AGC.A.CGUACCUUUGGUCUGGA.AG.G.U..AUG.UU..CCGU....CAA.UUGGGU...AUUUA..U-...............................................G..CUgC.G.C.A.U..GG.UC..AG..AA..AUA..U..A..C.A.CCA.....G....A....A..G......A..CAA
   NC_006300.1       C.U...C.....A....AU.U...A...U.........U.....A......G......A....A..-....-....-......-.....-....G...A......G...C...A...A....C....C......U.C..G......UgcgauU.....UCA...ACCAC..AA.............................................................U..GG...CG..UU..U...G.UUC...G.....C..G.UA...U..U.....A......A.....A......U...A.C...C.U..U...A....U...U.G.......A.A...A......AA.U....A.A.-....---...-.--...-.-.-agauaucg.................................guaaacaaa.---...---...-...U.U.GUGCCGAU...CAUUGC...C.GACGA.AGC.U.CGGACUUUCGGUAUGGA.AG.G.U..UUA.UU..CCGU....CAA.GUGGGU...AUCUA..UA...............................................A..UC.C.G.C.A.C..GG.UC..AA..AA..CUA..UguA..C.C.-UU.....C....G....G..A......-..---
   NC_006512.1       A.U...G.....C....GG.U...U...C.........U.....G......A.....aA....G..G....U....U......C.....A....G...G......G...G...Au.cG....U....G......A.A..A......U.....U.....UCC...UCAAC..UA.............................................................U..GG...CC..UU..U...G.UUC...G.....U..G.UA...C..U.....G......A.....C......A...G.C...G.C..U...G....C...U.G.......A.A...A......GA.C....A.A.G....AAA...A.UU...G.G.U...................................................AAA...CGU...A...U.U.GUGCCAAU...UAUUCC...G.GAUGA.AGC.U.CGUACCUUUGGUAUGGA.AG.G.C..UUG.UU..CCGU....CAG.GUGGGU...AUUUA..UU...............................................C..GC.A.C.C.A.U..GG.CC..AG..AA..AUA..C..A..C.G.CCG.....C....A....G..G......A..UAA
   NC_007204.1       -.-...-.....-....--.U...C...U.........U.....A......A......A....A..Gg..cA....G......U.....A....A...C......G...G...U...A....A....A.....gA.G..C......A.....A.....UCA...ACCAC..CA.............................................................U..GG...UG..UU..U...G.UGC...G.....U..C.UA...U..U.....A......U.....C......A...G.C...G.A..U...G....C...U.A.......A.A...G......AA.U....A.A.A....GAC...A.UC...C.A.A...................................................GAU...CGC...G...U.U.GUACCUAU...CGUUCC...U.GAUGA.AGC.C.CGUACUUUUGGUCUAGA.AG.G.G..AUG.UU..CCGU....CAA.UUGGGU...AUCUA..UU..............................................cG..GC.A.G.-.U.U..GG.UC..AA..AA..AUA..U..A..C.G.CCA.....G....A....A..G......A..UAG
   NC_007292.1       U.C...-.....C....UU.U...G...C.........U.....A......A......U....A..C....A....A......C.....A....A...A......A...U...A...A....A....G......A.U..A......U.....U.....UCU...ACUAC..UC.............................................................U..CG...CA..UU..U...A.UAC...G.....U..G.UU...C..U.....A......A.....A......U...A.U...A.U..U...A....C...U.A.......A.A...A......UA.C....A.C.C....CCA...A.UU...A.A.A...................................................AAU...AGA...C...U.A.GUACCCAU...AAUUGC...U.GAUGA.GGG.C.CGAACCUUCGGGAUGGA.AG.G.G..CUA.UU..UCGU....CAA.AUCGGU...AUUUA..UA...............................................A..CU.C.C.A.U.G..GG.GC..AA..CA..AUA..C..A..C.U.CCU.....C....A....A..G......A..UCA
   NC_007481.1       A.U...C.....C....GC.U...A...C.........U.....U......G......A....A..G....A....A......C.....A....A...A......A...A...C...G....U....G......A.U..A......U.....U.....UCU...ACCAC..UA.............................................................U..GG...GU..UU..U...G.UUC...G.....U..G.CU...C..U.....U......A.....A......U...A.U...U.U..U...A....C...U.A.......A.A...A......GA.C....A.A.-....---...-.--...-.-.-aggcauug.................................guaaaaaca.---...---...-...U.A.GUACCUAU...UAUUGC...C.GACGA.AGC.A.CGUACCUUUGGUAUGGA.AG.G.U..UUG.UU..CCGC....CAA.AUUGGU...AUUUA..UA...............................................A..CC.C.G.C.A.U..GG.CC..AA..AA..CUA..C..A..C.A.CCU.....C....A....A..G......A..UCG
   NC_007510.1       A.G...C.....C....GC.U...G...C.........U.....G......A......A....G..G....G....C......A.....C....G...G......G...C...G...A....A....GgccgugA.G..A......U.....C.....UCG...ACGAC..GA.............................................................U..GU...CG..UU..C...G.UGC...G.....G..A.UC...C..U.....G......A.....A......C...A.U...C.C..U...G....C...U.G.......A.A...G......GA.C....A.A.G....GCG...C.UG...G.G.C...................................................AAG...CGC...A...U.C.GUGCCGAU...CGUCCC...G.GACGA.AUC.G.CGUACGUUCGGCAUGGA.AG.G.C..CUG.UU..CCGC....CAG.AUCGGU...AUCUG..GA...............................................A..CC.A.G.G.A.A..GG.CC..AG..AA..GUA..C..G..U.G.CCG.....G....A....A..Ga....uU..CCG
   NC_007511.1       C.C...G.....C....GU.U...-...-.........-.....C......G......A....C..G....G....U......C.....A....G...C......U...C...A...A....G....G......A.C..A......G.....C.....---...-----..--ggcgaacguggg................................cugucgacgacga....U..GG...CG..UU..C...G.UGC...G.....C..A.UC...C..U.....-......-.....-......C...G.G...C.A..C...G....C...U.G.......C.U...G......AA.G....G.A.-....---...-.--...-.-.-uccggcgcuc..............................ggcaagcucg.---...---...-...U.C.GUGCCGAU...CGUGCC...G.GACGA.AUC.G.CGUACGUUCGGGAUGGA.GG.G.C..CUG.UU..CCGC....CAG.AUCGGC...AUCCA..CU...............................................C..GC.A.U.C.U.C..GG.CC..AG..CU..CUA..U..A..C.G.CCG.....C....A....G..G......A..-CG
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   NZ_LS483422.1     G.U...C.....A....GC.U...U...C.........U.....U......G......A....A..G....A....A......C.....A....A...U......C...U...A...A....A....G......A.A..A......U.....U.....UCA...ACGAC..GA.............................................................U..CG...CG..UU..U...G.UUC...G.....C..G.UU...U..U.....G......A.....A......U...G.U...A.A..U...G....U...U.G.......A.A...A......AA.U....A.A.C....UCU...A.UC...A.A.A...................................................GAG...CGU...U...U.A.GUCCCAAU...UAUUGC...G.GAUGA.AGC.A.CGUACUUUCGGUAUGGA.AG.G.C..UUG.UU..CCGU....CAA.AUCGGU...AUUUA..UA...............................................G..UC.C.G.A.A.A..GG.AC..AG..CA..AUA..U..A..C.C.CCG.....C....A....G..G......A..UCG
   NZ_LS483429.1     A.A...G.....C....AU.U...A...U.........U.....A......G......A....A..G....A....A......C.....A....A...C......C...U...C...G....U....G......G.U..A......U.....U.....UCA...ACCAC..UA.............................................................U..GG...CG..UU..U...A.CUC...G.....U..G.CA...U..U.....A......A.....A......C...A.U...C.U..U...A....U...U.A.......A.A...A......GA.U....A.-.-....---...-.--...A.-.-aaacauc...................................gguaaaac.UAU...---...-...-.C.GUUCCAAU...GAUUGC...G.GAUGA.AGC.G.CGUACUUUCGGUAUGGA.AG.G.U..UUA.UU..CCGU....CAA.GUUGGU...AUUUA..UA...............................................A..CC.C.A.C.A.U..GG.UC..AA..AA..CUA..UguA..C.C.-UU.....C....A....-..G......A..CCG
   NZ_LS483443.1     C.U...G.....C....GU.U...G...U.........U.....A......G......A....A..-....-....-......-.....-....G...C......G...C...A...A....C....C......A.C..G......U.....CcgauuUCA...ACCAC..AA.............................................................U..GG...CA..UU..C...G.UUC...G.....U..U.UC...U..U.....A......A.....A......U...A.C...G.U..U...G....U...U.A.......A.A...A......GA.C....A.A.A....AAU...G.UG...G.-.-guca.........................................acaca.---...---...-...U.U.GUGCCAAU...CGUGGC...A.GACGA.AGC.G.CGUACUUUCGGUAUGGA.AG.G.C..UUA.UU..CCGU....CAA.AUCGGU...AUUUA..CA...............................................A..CC.C.A.C.A.U..GG.UC..AA..AA..UUA..U..G..U.C.CCA.....U....C....C..G......A..CCG
   NZ_LS483458.1     A.A...G.....C....AU.U...A...U.........U.....A......G......A....A..G....A....A......C.....A....A...C......C...U...C...G....U....G......G.U..A......U.....U.....UCA...ACCAC..UA.............................................................U..GG...CG..UU..C...A.CUC...G.....U..G.CA...U..U.....A......A.....A......C...A.U...C.U..U...A....U...U.A.......A.A...Ag...auAA.A....A.A.C....AUU...G.GU...A.A.A...................................................ACU...AUC...G...U.U.CCAAUGAU...---UGC...U.GAUGA.AGC.G.CGUACUUUCGGUAUGGA.AG.G.U..UUG.UU..CCGU....CAA.GUUGGU...AUUUA..UA...............................................A..CC.C.A.C.A.U..GG.UC..AA..AA..CUA..U..G..U.U.CCU.....U....C....A..G......A..UCG
   NZ_LS483470.1     G.C...G.....C....GC.U...G...C.........U.....G......G......A....A..G....A....G......C.....A....G...A......A...C...A...A....A....G......A.A..A......U.....U.....UCU...ACCAC..UA.............................................................U..CG...CU..UU..C...G.UUC...G.....C..G.CA...C..U.....G......A.....A......C...G.U...G.A..U...G....C...U.G.......A.A...-......--.-....-.A.G....ACG...C.--...-.-.-uucuau......................................uggacc.--G...CGU...C...U.G.GUGCCGAU...UCUGGC...A.GAUGA.AGC.C.CGUACCUUUGGUAUGGA.AG.G.U..CUG.UU..CCGU....CAA.AUCGGU...AUCUA..UA...............................................G..CC.C.G.A.A.A..GG.CC..AG..CA..GUA..U..G..U.A.CCG.....C....A....G..G......A..CCG
   NZ_LS999205.1     A.C...C.....C....AG.C...U...C.........A.....A......G......G....A..C....A....C......C.....G....G...C......G..aC...C...G....G....G......C.G..A......U.....C.....UCC...ACCAC..CA.............................................................U..GG...CC..UU..C...G.UGC...G.....C..A.--...-..U.....C......C.....U......C...G.G...C.A..C...C....C...U.G.......C.U...C......AA.G....G.A.C....CCG...C.--...-.-.-agauc........................................ggcaa.--G...CGG...G...U.G.GUGCCGAU...CGUGCC...U.GACGA.GUC.G.CGCACCUUCGGCAUGGA.AA.G.C..CUG.UU..CCGC....CAG.AUCGGC...AUCCA..CU..............................................cG..GC.G.G.U.G.-..GG.CC..AG..CU..CUA..U..A..C.C.CCA.....C....A....G..Ga....uG..CCG
   NZ_LT615228.1     -.-...-.....-....-A.A...G...-.........-.....C......A......A....C..G....A....C......U.....G...aA...G......G...C...C...G....U....G......A.A..A......U.....U.....UCU...ACGAC..UA.............................................................U..GG...CG..UU..U...G.UGC...Gc...aU..G.CU...C..A....aU......A.....C......C...G.U...A.G..U...G....C...G.C.......G.A...C......AA.G....A.-.C....UAU...C.GG...C.A.A...................................................ACG...--A...G...U.A.GUUCCAAU...CGUUCC...A.GAUGA.AUC.U.CGUACCUUUGGUAUGGA.GG.G.U..AUG.UU..CCGU....CAA.CUUGGU...AUUUG..GA...............................................A..UC.A.A.C.U.C..GG.UC..AG..CU..UUA..C..A..C.G.CCA.....G....A....A..G......A..UCA
   NZ_LT615367.1     G.C...U.....C....GC.U...G...U.........U.....A......G......A....A..G....A....A......C.....A....G...A......C...C...A...A....A....G......A.A..A......U.....U.....UCG...ACCAC..GA.............................................................U..UG...CA..UU..C...G.UGC...G.....U..G.CG...C..U.....G......A.....A......U...G.U...G.A..U...G....C...U.G.......A.A...G......AA.C....C.C.G....UCG...A.UU...A.A.A...................................................GAC...CGU...C...U.G.GUGCCGAU...CAUUGC...C.GAUGA.AGC.G.CGUACCUUCGGGAUGGA.AG.G.U..CUG.UU..CCGU....CAG.AUUGGU...AUCUA..CA...............................................G..CC.C.G.A.A.C..GG.UC..AG..CA..GUA..U..A..C.C.CCG.....C....A....G..G......A..UCG
   NZ_LT853882.1     G.C...G.....C....-C.U...G...C.........U.....C......A......A....A..G....A....CagcggcG.....A....G...C......G...C...A...G....C....-......-.U..-......A.....U.....UCC...ACCAC..CA.............................................................U..GU...CG..UU..C...G.UGC...A.....G..A.GC...C..U.....C......A.....A......C...A.U...C.G..C...C....C...U.G.......C.G...C......GA.C....A.A.-....---...-.--...-.-.-ggaacuug.................................gcccgcgua.---...---...-...U.C.GUGCCGAU...CGUGGC...C.GAUGA.AGC.G.CGUACGUUCGGCAUGGA.AG.G.G..AUG.UU..CCGC....CAG.AUCGGC...AUCUA..CG...............................................C..CC.C.G.U.U.C..GG.CC..AG..AA..GUA..CaaG..C.C.GGU.....C....G....A..U......G..CCG
   NZ_LT855380.1     G.C...U.....C....AA.G...G...G.........U.....-......-......A....C..G....G....G......U.....G...aG...C......G...C...-...-....-....G......A.G..A......U.....A.....UCG...ACGAC..CA.............................................................U..GG...CA..UU..C...G.UGC...G.....C..A.UC...C..-.....U......G.....U......C...G.A...C.G..C..uG....C...U.C.......A.A...G......GA.C....C.-.-....---...-.--...-.-.-cgaacaucgg..............................caaacucauc.---...---...-...-.-.GUGCCGAU...CGUGCC...U.GACGA.GUC.G.CGAACGUUCGGCAUGGA.AA.A.C..CUG.UU..UCGG....CAG.AUCGGC...AUCCA..UU...............................................C..CC.A.C.G.U.C..GG.CC..AG..UU..GUA..C..A..C.G.CCG.....C....A....G..Ga....uG..CCG
   NZ_LT897836.1     C.C...C.....C....CC.U...C...U.........U.....A......G......G....A..G....A....G......C.....A....A...A......A...G...A...A....A....G......A.A..A......U.....A.....UCU...ACUAC..UA.............................................................U..CG...CU..UU..U...G.UAC...G.....U..G.UG...C..U.....A......A.....A......C...G.U...A.A..U...G....C...U.G.......A.A...G......AA.U....A.C.A....UCG...A.UC...A.A.G...................................................GAU...CGA...U...U.G.GUUCCGAU...UGUCGC...C.GACGA.AGC.U.CGUACCUUUGGUAUGGA.AG.G.A..CUG.UU..CCGC....CAA.AUAGGC...AUUUA..UA...............................................G..CC.C.U.C.A.C..GG.CC..AG..CA..GUA..U..A..C.U.CCA.....C....A....G..G......A..CCG
   NZ_LT906434.1     A.C...G.....C....AC.A...G...C.........U.....G......C......A....A..Ac..cA....G......U.....G....G...C......G..aC...C...G....C....G......A.G..U......U.....C.....UCU...ACCAC..CA.........................................................u..gG..CA...UU..CG..U...G.CGU...A.....U..C.CU...U..U.....C......U.....A......C...C.-...-.U..U...G....C...U.G.......A.A...A......GA.C....A.A.-....---...-.--...-.-.-acaaaucg.................................gcaaacgca.---...---...-...U.C.GUACCUAU...CGUACC...C.GACGA.AAG.C.CGCACCUUCGGUAUGGA.AG.G.U..AUG.UU..CCGC....CAA.UACGGU...AUUUG..GA...............................................A..UC.C.G.A.A.A..GG.CC..AA..CA..AUA..C..A..C.C.CCG.....C....A....A..G......A..UAA
   NZ_LT906435.1     A.G...G.....C....GA.C...C...G.........C.....C......G......A....A..G....-....-......-.....-....-...-......G...C...C...G....U....G......A.G..A......U.....U.....UCG...ACGAC..GA.............................................................U..GG...CG..UU..C...G.UGC...G.....U..A.UU...C..U.....C......A.....A......C...G.U...G.C..U...G....C...U.C.......A.A...G......GA.C....A.A.G....GCG...C.UG...G.G.U...................................................CAA...CGC...A...U.C.GUGCCUAU...CG-UGC...CgGAUGA.GUC.A.CGCACGUUCGGUAUGGA.AG.G.C..UUG.UU..CCGC....CAG.AUCGGU...AUCUG..GA...............................................G..CC.A.G.G.U.C..GG.CC..AG..CG..CUA..C..A..U.C.CCG.....C....A....A..G......A..UCA
   NZ_LT906448.1     G.U...U.....U....GC.A...C...A.........A.....U......U......A....U..U....U....G......A.....A....G...C......G...C...A...A....G....C......A.C..G......U.....CcaauuUCU...ACCAC..AA.............................................................U..GG...CA..UU..U...G.UUC...G.....U..U.CA...U..U.....A......A.....A......C...G.U...A.U..U...A....U...U.G.......A.A...A......AA.C....A.A.A....UCU...G.UG...G.G.U...................................................AAA...CGU...A...U.U.GUUCCAAU...UCUUGC...A.GAUGA.AGC.A.CGUACAUUCGGUAUGGA.AG.G.C..UUA.UU..CCGU....CAA.AUUGGU...AUUUA..CA...............................................A..CC.C.A.U.A.C..GG.UC..AA..AA..UUA..U..A..C.U.CCG.....C....A....A..G......A..CCG
   NZ_LT906463.1     -.-...-.....-....-U.U...A...U.........U.....G......G......A....A..G....C....U.....cA.....A....G...C......A...C...G...U....C....-......C.A..A......U.....U.....UCA...ACUAC..AA.............................................................U..GG...CA..UU..U...G.UAC...G.....U..U.UC...U..U.....A......A.....A......U...A.C...C.U..U...A....U...U.A.......A.A...A......GA.U....A.A.A....---...-.--...-.-.-aauauug...................................guaaacaa.---...---...A...U.U.GUGCCAAU...UAUUGC...G.GAUGA.AGC.C.CGUACCUUUGGUAUGGA.AG.G.G..UUA.UU..CCGU....CAA.AUUGGU...AUUUA..CA...............................................A..CC.C.A.C.A.C..GG.CC..AA..AA..CUA..U.gU..G.C.CUU.....C....A....-..G......A..CCG
   NZ_LT906479.1     G.C...U.....C....GC.U...G...C.........U.....G......G......A....A..G....A....G......C.....A....G...A......A...C...A...A....A....G......A.G..A......U.....C.....UCC...ACCAC..UA.............................................................U..CG...CC..UU..C...G.UGC...G.....U..G.CC...C..U.....G......A.....A......C...G.U...G.A..U...G....C...U.G.......A.A...G......AA.C....A.A.G....UCG...A.UC...A.A.A...................................................GAU...CGC...C...U.G.GUGCCCAU...CAUCGC...C.GACGA.AGC.G.CGUACCUUCGGUAUGGA.AG.G.C..CUG.UU..CCGU....CAG.AUCGGC...AUCUA..CA...............................................G..CC.C.U.A.A.C..GG.CC..AG..CA..GUA..C..A..C.C.CCG.....C....A....G..G......A..CCG
   NZ_LT906483.1     G.U...G.....C....GC.A...-...-.........-.....-......-......A....G..G....G....G......U.....C....G...G......G...CaacC...A....G....G......A.G..G......U.....G.....GCG...ACCAC..CA.............................................................U..GG...CC..AC..C...G.UCC...G.....G..A.CC...U..U.....C......C.....G......G...G.A...A.G..U...G....U...U.G.......C.G...C......GA.C....A.A.-....---...-.--...-.-.-ggagcucg.................................gcuggcgga.---...---...-...U.C.GUCCCGAU...CAUCCC...G.GACGA.GGC.G.CGCACCUUCGGGAUGGAcUC.G.U..-GG.UU.cCCGU....CGC.UGAAG-...AUCUA..CA...............................................A..CC.C.C.A.A.C..GG.UC..AG..CU..GUA..C..A..C.G.UCGg...uC....G....A..C......G..CCG
   NZ_LT907988.1     C.U...U.....C....GC.C...-...C.........U.....G......G......A....G..G....C....C......G.....A....G...G......G...C...A...A....G....G......A.A..A......U.....G.....UCC...ACCAC..CA.............................................................U..GU...CG..CU..G...G.UGC...G.....C..C.AG...U..U.....C......A.....G......C...A.A...C.C..U...G....C...U.G.......A.A...G......GA.C....C.C.G....-GU...G.GU...G.G.G...................................................GCC...GCG...C...GuG.GUGCCCAU...CGUGGC...C.GACGA.GGC.G.CGCACCUUCGGCAUGGC.CA.A.C..CUG.UU..CCGC....CAG.GUGGGC...AUCUA..UU..............................................cG..CC.G.C.A.G.-..GG.CC..AG..CU..GUA..C..G..A.-.GCC.....C....G....A..G......G..ACG
   NZ_OU594967.1     G.C...G.....C....AC.U...G...U.........U.....A......C......A....A..G....A....A......C.....A....G...A......A...A...A...A....A....G......A.C..A......U.....C.....UCG...ACCAC..GA............................................................uU..GG...CU..U-..C...G.UUC...G.....A..U.CU...C..U.....G......A.....A......U...G.U...U.C..U...U....C...U.G.......A.A...A......AA.C....A.A.A....G-G...AcUU...A.A.A...................................................GAU...CAC...A...U.C.GUACCUAU...UAUAGC...C.GACGA.AGC.U.CGUACCUUUGGUAUGGA.AG.G.U..UUG.UU..CCGC....CAG.AUUGGU...AUUUA..CA...............................................A..CC.C.U.G.G.G..GG.UC..AG..CA..AUA..U..A..C.A.CCG.....C....A....A..G......A..CCG
   NZ_OU907312.1     A.-...U.....C....CC.U...A...U.........U.....A......A......C....G..G....A....A......C.....A....A...A......A...C...C...G....U....G......A.G..A......U.....C.....UCG...ACUAC..CC.............................................................U..GG...CC..UU..U...G.UUC...G.....G..G.UC...U..U.....G......A.....A......U...G.U...A.U..U...G....C...U.G.......A.A...A......CA.G....C.-.-....---...-.--...-.-.-ccacgcugg...............................guccacgcau.---...---...-...-.U.GUGCCUAU...UAUUGC...C.GACGA.AGC.G.CGCACCUUUGGAAUGGA.GG.G.G..CUG.UU..CCGC....CAA.AUUGGC...AUUUA..UA...............................................A..CC.C.A.C.A.G..GG.GC..AG..CA..GUA..U..A..C.C.CCG.....U....C....C..G......A..UCG
   NZ_OU912926.1     A.A...G.....U....GU.U...G...C.........U.....U......A......A....A..G....G....-......-.....-....-...C......A...C..cG...A....A....GagcgugA.G..A......U.....U.....UCC...ACCAC..CA.............................................................U..GG...CU..UU..U...G.UAC...G.....C..A.--...-..U.....G......C.....U......G...G.G...C.A..U...U....C...U.G.......G.U...G......AA.G....G.A.-....---...-.--...-.-.-uaaaaauaua..............................ggcaagcucg.---...---...-...U.G.GUGCCCAU...CGUGCC...G.GACGA.AUC.A.CGCACUUUCGGCAUGGA.AG.G.A..UUG.UU..CCGC....CAG.CUCAGC...AUUUU..U-...............................................U..CU.C.A.A.GuU..GG.CC..AG..CU..AUA..U..A..C.A.CCG.....C....A....G..Ga....uG..CCG
   NZ_OW485601.1     A.G...G.....G....AC.A...A...U.........U.....G......A......A....G..G....C...gA......C.....C....G...A......A...G...G...G....C....G......G.C..Ag....aU.....C.....UCC...ACCAC..CA.............................................................U..GG...CC..UU..C...G.UCC...G.....G..G.UG...C..U.....C......A.....A......C...-.-...-.A..C...G....C...U.G.......C.U...G......CG.C....G.-.-....---...-.--...-.-.-acaagaagauu............................ggccggcgcau.---...---...-...-.C.GUGCCGAU...CGUGCC...C.GACGA.AAG.C.CGCACCUUCGGCAUGGA.GG.G.G..AUG.UU..CCGC....CAG.UUCGGC...AUCUU..CA...............................................G..CC.A.G.G.U.G..GG.CC..AG..CU..--G..U..A..C.C.GGC.....C....G....G..A......-..---


   Structure         (.(...(.....(....((.(..........................................(..(....(....(......(.....(....(...(......(...(...(...(....(....(........(..(..............................................................................................)..)....))..))......).))).........)..).))...)..).............................(.(...(.(..(...(.........................................(.(.....((...(.((...........................................................)))...))....)...)..............))))))...........))).).))).....((((.((....(.(.(..(((.((..((((...........(((...........................................................)..)).......).)..)).....))..))..).......)..).).........)....)..............)..)))


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pdhR-aceE-aceF-lpd



Position: 2445-2614, Conformation: #0







97% 90% 75% 50% Nucleotide present N N N Nucleotide identify E < 0.1 Base-pair covariation E < 0.05 Helix-level covariation 97% 90% 75%

Y R R R R R G A R U U C A C A C A U G G C U U Y G U C G Y Y U R Y R U R Y U R R R A Y R A U G U C C A U Y R U C G A Y G A R G C C G Y A C Y U U Y G G Y A U G G A R G G Y U G U U C C G Y C A R U G G Y A U Y U A Y Y C G G Y C A R U A Y R Y C C R R G R Y Y R 5'