pdhR-aceE-aceF-lpd



Position: 1365-1454, Conformation: #1







DMS reactivity > 1.0 0.0 0.4 0.7 G/U/No data
Position: 0 (position.label in template: 0.5')5' Position: 1 (position.label in template: 1.U) Reactivity: nanU Position: 2 (position.label in template: 2.U) Reactivity: nanU Position: 3 (position.label in template: 3.U) Reactivity: nanU Position: 4 (position.label in template: 4.A) Reactivity: nanA Position: 5 (position.label in template: 5.A) Reactivity: nanA Position: 6 (position.label in template: 6.C) Reactivity: nanC Position: 7 (position.label in template: 7.C) Reactivity: nanC Position: 8 (position.label in template: 8.A) Reactivity: nanA Position: 9 (position.label in template: 9.C) Reactivity: nanC Position: 10 (position.label in template: 10.U) Reactivity: nanU Position: 11 (position.label in template: 11.U) Reactivity: nanU Position: 12 (position.label in template: 12.C) Reactivity: nanC Position: 13 (position.label in template: 13.U) Reactivity: nanU Position: 14 (position.label in template: 14.U) Reactivity: nanU Position: 15 (position.label in template: 15.C) Reactivity: nanC Position: 16 (position.label in template: 16.C) Reactivity: nanC Position: 17 (position.label in template: 17.G) Reactivity: nanG Position: 18 (position.label in template: 18.U) Reactivity: nanU Position: 19 (position.label in template: 19.G) Reactivity: nanG Position: 20 (position.label in template: 20.C) Reactivity: nanC Position: 21 (position.label in template: 21.A) Reactivity: nanA Position: 22 (position.label in template: 22.C) Reactivity: nanC Position: 23 (position.label in template: 23.G) Reactivity: nanG Position: 24 (position.label in template: 24.C) Reactivity: nanC Position: 25 (position.label in template: 25.A) Reactivity: nanA Position: 26 (position.label in template: 26.A) Reactivity: nanA Position: 27 (position.label in template: 27.C) Reactivity: nanC Position: 28 (position.label in template: 28.G) Reactivity: nanG Position: 29 (position.label in template: 29.A) Reactivity: nanA Position: 30 (position.label in template: 30.G) Reactivity: nanG Position: 31 (position.label in template: 31.C) Reactivity: 1C Position: 32 (position.label in template: 32.A) Reactivity: 0A Position: 33 (position.label in template: 33.G) Reactivity: nanG Position: 34 (position.label in template: 34.G) Reactivity: nanG Position: 35 (position.label in template: 35.A) Reactivity: 1A Position: 36 (position.label in template: 36.U) Reactivity: nanU Position: 37 (position.label in template: 37.G) Reactivity: nanG Position: 38 (position.label in template: 38.G) Reactivity: nanG Position: 39 (position.label in template: 39.C) Reactivity: 0C Position: 40 (position.label in template: 40.G) Reactivity: nanG Position: 41 (position.label in template: 41.G) Reactivity: nanG Position: 42 (position.label in template: 42.C) Reactivity: 0.5C Position: 43 (position.label in template: 43.G) Reactivity: nanG Position: 44 (position.label in template: 44.A) Reactivity: 0A Position: 45 (position.label in template: 45.C) Reactivity: 0C Position: 46 (position.label in template: 46.C) Reactivity: 0.5C Position: 47 (position.label in template: 47.U) Reactivity: nanU Position: 48 (position.label in template: 48.G) Reactivity: nanG Position: 49 (position.label in template: 49.G) Reactivity: nanG Position: 50 (position.label in template: 50.U) Reactivity: nanU Position: 51 (position.label in template: 51.U) Reactivity: nanU Position: 52 (position.label in template: 52.U) Reactivity: nanU Position: 53 (position.label in template: 53.A) Reactivity: 1A Position: 54 (position.label in template: 54.C) Reactivity: 1C Position: 55 (position.label in template: 55.U) Reactivity: nanU Position: 56 (position.label in template: 56.U) Reactivity: nanU Position: 57 (position.label in template: 57.C) Reactivity: 0C Position: 58 (position.label in template: 58.C) Reactivity: 0C Position: 59 (position.label in template: 59.A) Reactivity: 0A Position: 60 (position.label in template: 60.G) Reactivity: nanG Position: 61 (position.label in template: 61.G) Reactivity: nanG Position: 62 (position.label in template: 62.G) Reactivity: nanG Position: 63 (position.label in template: 63.C) Reactivity: 0.5C Position: 64 (position.label in template: 64.C) Reactivity: 0C Position: 65 (position.label in template: 65.A) Reactivity: 0A Position: 66 (position.label in template: 66.C) Reactivity: 0C Position: 67 (position.label in template: 67.A) Reactivity: 0.5A Position: 68 (position.label in template: 68.U) Reactivity: nanU Position: 69 (position.label in template: 69.C) Reactivity: 0C Position: 70 (position.label in template: 70.U) Reactivity: nanU Position: 71 (position.label in template: 71.C) Reactivity: 0.5C Position: 72 (position.label in template: 72.C) Reactivity: 0.5C Position: 73 (position.label in template: 73.C) Reactivity: 0.5C Position: 74 (position.label in template: 74.C) Reactivity: 0C Position: 75 (position.label in template: 75.G) Reactivity: nanG Position: 76 (position.label in template: 76.G) Reactivity: nanG Position: 77 (position.label in template: 77.G) Reactivity: nanG Position: 78 (position.label in template: 78.C) Reactivity: 0C Position: 79 (position.label in template: 79.G) Reactivity: nanG Position: 80 (position.label in template: 80.U) Reactivity: nanU Position: 81 (position.label in template: 81.G) Reactivity: nanG Position: 82 (position.label in template: 82.U) Reactivity: nanU Position: 83 (position.label in template: 83.A) Reactivity: 0A Position: 84 (position.label in template: 84.C) Reactivity: 0.5C Position: 85 (position.label in template: 85.G) Reactivity: nanG Position: 86 (position.label in template: 86.C) Reactivity: 0C Position: 87 (position.label in template: 87.U) Reactivity: nanU Position: 88 (position.label in template: 88.C) Reactivity: 1C Position: 89 (position.label in template: 89.G) Reactivity: nanG Position: 90 (position.label in template: 90.U) Reactivity: nanU Position: 91 (position.label in template: 91.G) Reactivity: nanG Position: 92 (position.label in template: 92.C) Reactivity: 1C Position: 93 (position.label in template: 93.U) Reactivity: nanU Position: 94 (position.label in template: 94.U) Reactivity: nanU Position: 95 (position.label in template: 95.U) Reactivity: nanU Position: 96 (position.label in template: 96.C) Reactivity: 0C Position: 97 (position.label in template: 97.C) Reactivity: 0C Position: 98 (position.label in template: 98.U) Reactivity: nanU Position: 99 (position.label in template: 99.G) Reactivity: nanG Position: 100 (position.label in template: 100.G) Reactivity: nanG Position: 101 (position.label in template: 101.A) Reactivity: 0.5A Position: 102 (position.label in template: 102.A) Reactivity: nanA Position: 103 (position.label in template: 103.G) Reactivity: nanG Position: 104 (position.label in template: 104.G) Reactivity: nanG Position: 105 (position.label in template: 105.U) Reactivity: nanU Position: 106 (position.label in template: 106.C) Reactivity: nanC Position: 107 (position.label in template: 107.G) Reactivity: nanG Position: 108 (position.label in template: 108.U) Reactivity: nanU Position: 109 (position.label in template: 109.C) Reactivity: nanC Position: 110 (position.label in template: 110.U) Reactivity: nanU Position: 111 (position.label in template: 111.G) Reactivity: nanG Position: 112 (position.label in template: 112.A) Reactivity: nanA Position: 113 (position.label in template: 113.C) Reactivity: nanC Position: 114 (position.label in template: 114.U) Reactivity: nanU Position: 115 (position.label in template: 115.C) Reactivity: nanC Position: 116 (position.label in template: 116.A) Reactivity: nanA Position: 117 (position.label in template: 117.G) Reactivity: nanG Position: 118 (position.label in template: 118.G) Reactivity: nanG Position: 119 (position.label in template: 119.A) Reactivity: nanA Position: 120 (position.label in template: 120.G) Reactivity: nanG Position: 121 (position.label in template: 121.C) Reactivity: nanC Position: 122 (position.label in template: 122.A) Reactivity: nanA Position: 123 (position.label in template: 123.G) Reactivity: nanG Position: 124 (position.label in template: 124.C) Reactivity: nanC Position: 125 (position.label in template: 125.U) Reactivity: nanU Position: 126 (position.label in template: 126.G) Reactivity: nanG Position: 127 (position.label in template: 127.G) Reactivity: nanG Position: 128 (position.label in template: 128.A) Reactivity: nanA Position: 129 (position.label in template: 129.U) Reactivity: nanU Position: 130 (position.label in template: 130.A) Reactivity: nanA Position: 131 (position.label in template: 131.3')3' 10 20 30 50 100


pdhR-aceE-aceF-lpd



Position: 1365-1454, Conformation: #1







Retained alignments:


   NC_002977.6       UC.C...A...C.G...C...U...C...C.C...gA.....C...C...G....G......G....A...C....C...-........A...U...G..G...C......G.........G...C............GACCUGGUGUUUUU.............................................CCAG..G.GC..C..A..UU....CG..G.C.GC..CC.G....G..C.A..U.C...U.AU...GC..C..A..GG....G..CAU...UUCUG..GAA.G..GAC.G...GCU.............................GA.CC...GA.G....G.A.....G.C...A.U...C....U..G..GA
   NC_003910.7       UU.A...A...A.G...-...C...G...G.C....A.....A...C...G....C.....cA....G...A....A...A........A...U...G..G...C......G.........G...C............GAUUUUAUUUUCGC.............................................ACAA..G.GU..C..A..UA....UU..U.C.UC..CA.G....G..U.A..U.U...U.AU...UC..A..C..GU....G..CUU...UCAUG..GAA.G..GGC.G...UUU.............................AA.CU...GA.A....G.A.....U.C...A.A...A....U..G..AA
   NC_004347.2       UC.C...G...C.G...G...A...C...C.A....A.....A...C...G....A......A....A...A....A...G........A...C...G..G...C......G.........G...C............GACUUAGUGUAUUU.............................................CCAG..G.GC..C..A..UA....UC..G.C.UC..C-.-....U..G.G..U.A...U.UU...AU..G..C..GC....GuuCAU...UCCUU..GAA.G..GUC.G...UUU.............................AA.GC...GA.A....G.A.....U.C...A.A...U....U..A..GC
   NC_004369.1       UC.C...G...C.G..gC...A...A...G.G....A.....C...C...-....A......C....C...C....G...G........G...U...G..G...C......G.........G...U............GACCAGGUCUUCUU.............................................CCAG..G.GU..C..A..CG....CC..U.C.CC..CG.G....G..C.A..U.G...U.AC...GC..C..C..GC....G..CCU...UCCUC..GAG.G..GCC.G...UCU.............................CA.CC...GA.G....-.A.....G.C...G.A..uC....U..G..GA
   NC_004578.1       UU.C...G...C.G...G...G...C...G.U....A.....C...C...G....A......G....C...A....G...U........U...C...G..C...C......G.........G...U............GAUCUGGUUUACAU.............................................CCAA..G.GC..C..A..UU....CC..U.C.GC..CA.G....G..C.A..U.C...U.AC...GG..C..A..GG....G..CUU...AUCUG..GAA.G..GUC.G...CCU.............................GA.GC...GA.A....G.A.....G.C...A.A...C....U..G..GA
   NC_004603.1       UC.C...G...U.G...C...G...C...C.A....A.....A...C...G....A......G....A...A....G...G........A...C...G..G...U......G.........G...U............GACCUAGUUUACUA.............................................CCAA..G.GU..C..A..CA....UC..U.C.AC..CG.G....G..U.A..U.C...U.AC...GC..U..C..GU....G..CGU...UCGUU..GAA.G..GUC.G...UCU.............................AA.CU...GA.A....G.A.....G.C...A.G...C....U..A..GA
   NC_005126.1       UC.C...G...U.G...C...C...C...G.U....A.....A...U...G....A......A....A...A....U...G........A...C...G..G...C......G.........G...U............GAUUUGGUUUAUUU.............................................CCAA..G.GU..C..A..UA....UC..U.C.UC..CA.G....G..U.G..U.C...U.AC...GC..U..C..GU....G..CUU...UCCUU..GAA.G..GCC.G...UUU.............................AA.CU...GA.G....G.A.....G.C...A.G...A....U..G..AA
   NC_005966.1       UC.C...G...U.G...C...C...A...A.U....A.....G...U...G....A......U....A...A....C...U........U...U...G..G...C......G.........G...C............GACAUGAUCUAUUA.............................................UCAA..G.GU..C..A..CU....GC..G.C.AC..CA.G....G..U.A..U.U...U.AU...GC..A..C..GU....U..CAU...UCCUU..GAA.G..GCC.G...UUU.............................GA.CU...GA.A....G.A.....C.C...A.G...C....U..C..AA
   NC_006461.1       UC.C...G...C.G...G...G...C...C.G....G.....A...G...G....C......G....-...G....G...G........C...U...G..G..aC......C.........G...G............GACCUCGUCUUCUU.............................................CCAG..G.GC..C..A..CG....CC..U.C.CC..CC.G....G..G.A..A.C...U.AC...GC..C..C..GG....G..CCU...UUUUG..GAG.-..---.-...---gggcggcu..........uaaggagg...--.--...-A.G....G.A.....C.-...-.-...C....U..G..GA
   NC_006512.1       UC.C...G...U.G...C...G...C...C.A....A.....A...U...G....A......A....G...A....C...G........A...U...G..G...U......G.........G...U............GACUUCCUGUUUAU.............................................UCAG..G.GC..C..A..UG....UG..U.C.AC..CC.G....G..U.A..U.U...U.AU...GG..U..C..GU....G..CUU...UCAUU..GAA.G..GAC.G...CUU.............................GA.CC...GA.A....G.A.....G.C...A.A...U....U..G..AA
   NC_007164.1       UC.C...G...C.G...-...-...-...G.C....A.....A...G...G....A......C....C...Ac.ccG...G........G...C...G..G...C......G.........G...C............GACCAGAUCUUCUU.............................................CCAA..G.GC..C..A..CG....CC..U.C.CC..CC.G....G..C.A..U.G...U.AC...GC..C..C..GC....G..CUU...UCUUG..GAA.G..GCC.G...CCU.............................AA.GC...GA.G....G.A....aG.A...-.-...-....-..-..--
   NC_007292.1       UU.C...G...U.G...C...G...C...G.U....A.....A...U...A....A......G....C...A....C...G........A...U...G..G...C......G.........G...U............GACUUAGUAUAUUU.............................................UCAA..G.GC..C..A..UA....UU..U.C.AC..CU.G....G..U.A..U.A...U.AU...GC..C..C..GU....G..CUU...UUCUU..GAA.G..GAC.G...AUU.............................AC.AU...GA.G....G.A.....C.C...A.A...A....U..A..AA
   NC_007481.1       UU.A...A...A.G...C...A...C...C.A....A.....A...C...G....A......U....G...U....A...G........A...C...G..G...U......G.........G...C............GACUUAGUUUAUUA.............................................CCAG..G.GG..C..A..UA....UU..U.C.UC..CG.G....G..U.A..U.U...U.AU...GC..A..C..GC....G..CAU...UUGUA..GAA.G..GGC.G...UUU.............................AU.CG...-G.C....A.U....cG.C...A.G...C....U..A..GA
   NC_007484.1       UC.C...G...A.G...C...C...A...G.A....A.....A...U...G....A......A....G...A....G...C........A...A...G..A...G......G.........C...C............GACAUUGUUUAUUU............................................uCAAG..G.-C..C..A..CG....CC..U.C.GC..CG.G....G..U.C..C.C...U.AC...GC..U..C..GC....G..CUU...UUCUU..GAA.G..GCC.G...UUU.............................AU.CC...GA.G....C.A.....G.C...A.G...C....U..G..GA
   NC_007511.1       UC.C...G...C.G...G...C...C...G.C....A.....C...C...G....A......U....A...C....G...U........U...C...G..A...C......G.........G...C............GACAUGGUCUACAU.............................................CCAG..G.GC..C..A..UU....CG..G.C.GC..CC.G....G..C.A..U.C...U.AU...GG..C..C..GC....G..CAU...ACCUG..GAA.G..GCC.G...CAU.............................CA.CC...GA.C....G.C.....G.C...A.G...C....U..C..GA
   NC_007645.1       UC.C...A...C.G...C...U...G...G.C....G.....A...C...G....A......C....A...A....G...C........G...C...G..A...A......G.........G...C............GAUUUGAUCUACUU.............................................CCAG..G.GU..C..A..CA....CU..U.C.CC..CU.G....G..C.G..U.A...U.AC...GC..C..C..GU....U..CUU...UCCUG..GAA.G..GCC.G...CUU.............................CU.CU...GA.A....G.A.....G.C...A.G...A....U..G..GA
   NC_007712.1       UC.C...G...C.G...C...G...C...G.C....A.....A...C...G....A......U....A...A....A...G........A...C...G..G...C......G.........G...C............GACCUGGUCUACUU.............................................CCAG..G.GG..C..A..CA....UC..U.C.CC..CC.G....G..C.G..U.G...U.AC...GC..U..C..GC....G..CCU...UCCUU..GAA.G..GUC.G...UCU.............................GA.GC...GA.A....G.A.....U.C...A.G...A....U..G..AA
   NC_007908.1       GG.C...A...U.G...C...C...G...A.G....A.....G...U...G....A......A....A...A....C...C........A...U...G..G...U......G.........G...U............GACUGUCUCUAUAU.............................................CCAG..G.GU..C..A..CG....UG..G.C.AC..CC.G....G..U.G..U.U...U.AU...GC..C..C..GU....G..CCU...ACCUU..GAA.G..GCC.G...UUU.............................GA.CC...GA.A....G.A.....G.C...A.G...U....U..G..CU
   NC_007912.1       UC.C...G...C.G...G...U...G...A.C....G.....A...C...G....G......U....G...A....U...C........A...G...C..G...C......G.........G...C............GAUUUGAUUUACUU.............................................CCAG..G.GC..C..A..CA....UU..U.C.CC..CU.G....G..U.A..U.U...U.AU...GC..G..C..GU....U..CUU...ACUUA..GAA.G..GGC.G...UUU.............................GU.CG...GA.A....G.A.....G.C...A.A...C....U..A..GA
   NC_007947.1       UC.C...G...C.G...C...C...G...C.C....A.....A...C...G....A......G....C...G....U...U........U...C...G..G...C......G.........G...C............GACCUGAUUUACUU.............................................UCAG..G.GC..C..A..CU....CC..U.C.UC..CC.G....G..U.G..U.G...U.AU...GC..G..C..GC....G..CCU...UUCUC..GAA.G..GCC.G...CAU.............................CA.CG...GA.A....G.A.....G.C...A.G...C....U..G..UC
   NC_007954.1       UC.C...G...C.G...C...A...C...C.U....A.....A...U...G....A......A....A...A....A...G........A...C...G..G...U......G.........G...C............GAUUUAGUCUAUUA.............................................UCAA..G.GC..C..A..UA....UC..U.C.CC..CA.G....G..U.A..U.U...U.AU...GC..U..C..GU....G..CCU...UUGUU..GAA.G..GUC.G...UUU.............................AA.CG...GC.G....G.A.....U.C...A.A...U....U..A..GA
   NC_007963.1       UC.C...G...C.G...C...G...G...A.C....A.....AuggC...G....A......U....C...A....C...A........A...G...-..-...-......G.........G...C............GACCUGCUGUACAU.............................................CCAG..G.GG..C..A..CG....UG..A.C.GC..CG.G....G..C.A..U.C...U.AU...GC..G..C..GU....U..CCU...UCCUC..GAA.G..GCC.G...CCU.............................GA.CC...GA.A....G.A.....G.C...A.G...A....U..G..GA
   NC_008027.1       UC.C...A...G.G...C...C...C...C.G....A.....C...C...G....A......C....G...A....A...C........A...C...G..G...C......G.........G...C............GACCUGAUCUUCUU.............................................CCAG..G.GC..C..A..CG....CU..U.C.GC..CA.G....-..-.G..C.G...U.CUa.cGC..C..C..GC....G..CCU...UCAUG..GAA.G..GCC.G...CAU.............................CA.AC...GA.A....G.A.....C.C...A.G...A....U..G..AA
   NC_008260.1       UC.C...G...U.G...C...C...C...C.C....A.....G...U...G....A......A....G...A....A...A........A...C...G..A...G......G.........G...C............GACUUGGUGUUCUU.............................................UCAG..G.GA..C..A..UU....CG..G.C.AC..CG.G....G..C.G..U.G...U.AC...GC..G..C..GG....G..CCU...ACUUG..GAA.G..GGC.G...UAU.............................CA.GU...GA.A....G.A.....G.C...A.G...U....U..G..GA
   NC_008340.1       GG.C...A...U.G...C...G...C...C.G....U.....C...G...G....A......C....G...A....G...C........A...C...G..G...C......G.........G...C............GACAUGGUCUUCAU.............................................CCAG..G.GC..C..A..UU....CG..G.C.GC..CC.G....G..U.A..U.C...U.AU...GC..C..C..GG....G..CAU...UCCUC..GAG.G..GCC.G...CCU.............................CA.CC...GA.G....G.A.....U.C...A.A...C....U..G..CA
   NC_008345.1       UC.C...G...U.G...C...G...C...C.U....A.....A...C...G....A......G....C...A....U...G........A...C...G..G...U......G.........G...U............GAUUUGGUGUAUUU.............................................CCAA..G.GC..C..A..UA...uCG..C.A.CC..CG.Gu.auU..U.A..U.G...C.GC...GU..U..C..G-....-..--U...UCCUU..GAA.G..GCC.G...UAU.............................UA.CU...GA.A....G.A.....C.C...A.A...A....U..G..GC
   NC_008610.1       AU.C...G...U.G...G...U...CcugA.C....G.....C...U...G....A......G....C...A....A...G........G...U...G..C...A......-.........-...-............GAUUUGAUUUUCUU.............................................UCAA..G.GG..C..A..UA....UU..U.C.AC..CA.G....G..U.A..U.U...U.AU...UC..U..C..GU....G..CUU...AUUUA..GAA.G..GUC.G...CUU.............................GA.CU...GA.A....G.C.....A.C...A.A...A....U..G..UU
   NC_008700.1       UC.C...G...C.G...C...C...C...C.C....A.....A...C...C....A......C....A...A....A...G........A...U...G..G...U......G.........G...C............GACCUGGUUUACUA.............................................UCAG..G.GC..C..A..CA....UU..G.C.CC..CC.G....G..U.A..U.U...U.AU...AG..C..C..GU....G..CUU...UCCUC..GAA.G..GUC.G...UCU.............................GA.CC...GA.A....G.A.....G.C...A.G...C....U..G..GA
   NC_008709.1       UU.C...G...U.G...C...A...G...C.G....A.....A...U...G....A......A....A...C....C...G........A...U...G..G...C......G.........G...U............GAUUUAGUUUAUUA.............................................CCAG..G.GG..C..A..UA....UC..U.C.UC..CC.G....G..U.A..U.C...U.AU...GC..G..C..GU....G..CAU...UUCUU..GAA.G..GUC.-...---.............................GU.UU...A-.-....-.A.....G.-...C.G...C....U..G..AC
   NC_008781.1       GG.C...A...C.G...C...U...G...A.G....A.....G...C...G....A......A....A...A....C...C........A...C...G..G...C......G.........G...C............GACUGCCUCUACAU.............................................CCAG..G.GC..C..A..UG....UG..U.C.GC.cCG.G....C..-.G..U.G...U.AU...GC..C..C..GU....G..CCU...ACCUC..GAA.G..GCC.G...CCU.............................GA.CG...GA.A....G.A.....G.C...A.G...C....U..G..CU
   NC_008825.1       UC.C...G...C.G...C...G...C...G.C....A.....A...C...G....C......G....C...A....G...C........A...G...G..G...U......G.........G...C............GACCUGGUGUUCUA.............................................CCAGccG.CA..C..U..CG....GC..G.-.CC..C-.G....G..C.G..U.C...U.AC...GC..G..C..GU....G..CCU...UCCUC..GAA.G..GCC.G...CCU.............................GA.GC...GA.G....-.-.....G.C...C.Ga.cC....U..G..GC
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   NZ_LR134376.1     UC.C...G...C.G...C...U...C...G.C....A.....G...C...G....A......G....A...A....G...G........A...C...G..G...U......G.........G...C............GACCUGGUCUACUU.............................................CCAG..G.GU..C..A..CA....UC..U.C.CC..CG.G....G..C.A..U.C...U.AC...GC..C..C..GU....G..CCU...UCGCU..GAA.G..GUC.G...UCU.............................GA.CU...GA.A....G.A.....U.C...A.G...C....U..G..GA
   NZ_LR134378.1     UU.C...U...G.G...C...A...U...G.C....C.....C...C...Gc..aC......G....A...A....G...Gc......cA...C...G..G...C......G.........G...U............GACCUGAUCUACUU.............................................CCAG..G.GC..C..A..CU....CC..U.C.GC..CU.G....G..C.C..U.G...UaCA...GC..-..C..GC....G..CCU...UCAUC..GAG.G..GCC.G...CCU.............................CA.CC...GA.G....G.A.....C.C...A.G...C....U..G..AA
   NZ_LR134476.1     UC.C...G...U.G...G...U...A...A.G....A.....A...C...G....C......G....C...C....C...G........G...U...G..G...U......G.........G...C............GAUCAUGUGUUCUU.............................................CCAG..G.GU..C..A..UU....CC..U.C.GC..CA.G....G..U.A..A.C...U.AC...GC..G..C..GU....G..CCU...UCUUG..GAG.G..GCC.G...CUU.............................GA.CC...GA.A....G.C.....G.G...A.C...U....U..G..GA
   NZ_LR134479.1     UC.C...G...C.G...G...C...C...G.C....A.....A...C...C....A......C....C...C....C...G........G...C...G..G...C......G.........G...C............GACCAAGUCUUCUU.............................................CCAG..G.GC..C..A..CU....CC..U.C.CC..CC.G....G..C.G..U.G...U.AC...UC..C..C..GC....G..CAU...UUGUU..GAG.G..GUA.A...GCU.............................CA.CC...GC.U....G.A.....G.C...A.G...A....U..G..GA
   NZ_LR134494.1     UC.C...G...U.G...C...A...C...G.C....A.....C...C...G....A......A....C...A....A...G........A...U...G..G...C......G.........G...C............GAUCUGGUUUACUU.............................................CCAG..G.GC..C..A..CA....UC..U.C.UC..CG.G....G..C.G..U.U...U.AC...GC..A..C..GU....G..CCU...UCCUU..GAA.G..GCC.G...CUU.............................GA.CC...GA.A....G.A.....C.C...A.A...A....U..G..AA
   NZ_LR134510.1     UC.C...G...U.G...C...A...C...G.U....A.....A...C...G....A......A....A...A....A...G........A...U...G..G...C......G.........G...U............GACUUAGUUUACUU.............................................CCAA..G.GU..C..A..CA....GU..G.C.AC..CG.G....G..U.A..U.G...U.AC...GC..A..C..GU....G..CAU...UCGUU..GAA.G..GUC.G...CUU.............................AA.CU...CA.A....G.A.....A.C...A.A...A....U..G..GA
   NZ_LR134515.1     UC.A...A...A.G...C...G...G...C.G....A.....C...U...G....A......A....A...A....A...A........A...U...G..G...C......G.........G...C............GACUUAGUAUUUUU.............................................CCAA..G.GU..C..A..CG....CC..G.C.GC..CG.G....G..U.A..U.G...U.AU...GC..U..C..GU....G..CUU...AUGUU..GAA.G..GUC.G...UUU.............................AA.CG...GA.A....G.A.....G.C...A.A...U....U..A..GA
   NZ_LR134531.1     UC.C...G...U.G...C...U...C...G.U....A.....A...U...G....C......G....A...A....A...G........A...C...G..G...C......G.........G...U............GACUUGGUGUAUUU.............................................CCAA..G.GU..C..A..CA....UU..U.C.CC..CA.G....G..A.A..U.C...U.AU...GC..C..C..GU....G..CCU...UCCUU..GAA.G..GCC.G...UCU.............................GA.CU...GA.A....G.A.....G.C...A.G...A....U..G..AA
   NZ_LR217713.1     UC.C...G...A.G...C...A...A...G.C....A.....C...G...G....A......A....A...A....G...G........A...U...G..G...U......G.........G...U............GAUCUCGUUUAUUU.............................................UCAG..G.GA..C..A..UU....CU..U.C.UC..CA.G....G..C.A..U.A...U.AU...GC..U..C..GU....G..CUU...UUCUU..GAA.G..GGC.G...UCU.............................UA.GU...GA.G....C.A.....A.C...A.A...A....U..G..AA
   NZ_LR699007.1     UC.C...G...U.G...C...G...C...A.G....A.....A...C...G....A......A....A...A....A...G........A...C...G..G...C......G.........G...U............GAUGUUAUUUAUUU.............................................CCAG..G.GC..C..A..CU....UA..A.G.CC..CG.G....G..C.U..A.C...U.AC...GC..A..C..GC....G..CAU...UCAUG..GAA.G..GUC.G...UCU.............................GA.CC...GA.A....G.A.....G.C...A.G...C....U..G..AA
   NZ_LR884459.1     UC.C...G...C.G...C...C...G...C.U....A.....G...C...G....A......U....C...A....C...U........U...C...G..G...U......G.........G...U............GACAUGAUCUAUUA.............................................UCAA..G.GU..C..A..CU....CU..G.C.CC..CA.G....G..G.A..U.U...U.AU...GC..A..C..GU....U..CGU...UCUUA..GAA.G..GUC.G...GUU.............................GA.CC...GA.A....G.A.....U.C...A.G...U....U..G..GU
   NZ_LR890047.1     UU.C...G...A.G...C...C...C...G.C....A.....A...U...C....A......G....A...U....A...G........A...C...G..G...U......G.........G...A............GAUUUAGUGUACUU.............................................UCAA..G.GU..C..A..UA....UU..U.C.UC..CU.G....G..U.A..U.U...U.AU...GC..U..C..GU....G..CCU...UUCUU..GAA.G..GUC.G...UCU.............................UA.CA...GA.A....G.A.....A.C...A.G...C....U..A..AA
   NZ_LR990739.1     GG.C...G...U.G...C...G...C...C.C....U.....C...G...G....A......Ca..cC...C....A...C........C...C...G..G...-......-.........G...C............GACCUGCUGUUCGU.............................................CCAG..G.GC..C..A..CA....GC..G.C.CC..CG.G....G..C.A..U.C...U.AC...GC..C..C..GC....G..CCU...UCCUG..GAA.G..GCC.G...CAU.............................CA.GC...CA.G....G.A.....C.C...A.G...C....U..G..GA
   NZ_LS483250.1     UC.C...G...U.G...C...A...C...C.A....A.....C...G...G....A......A....A...A....A...G........A...C...G..G...U......G.........G...C............GAUUUAGUUUAUUA.............................................CCAA..G.GU..C..A..UA....UU..U.C.UC..CU.G....G..U.A..U.U...U.AC...GC..G..C..GU....U..CAU...UUGUG..GAA.G..GUC.G...UUU.............................AA.CU...GA.A....G.A.....A.C...A.A...C....U..A..AA
   NZ_LS483369.1     --.-...G...G.A...A...A...G...C.C....A.....A...A...G....-......-....-...G....C...G........A...A...G..G...C......Gaag...aagG...C............GAUUUGGUAUUCUU.............................................CCAA..G.GC..C..A..CG....UU..G.C.GC..CG.G....G..U.A..U.C...U.AC...GC..A..C..GU....G..CGU...UCGUC..GAA.G..GUC.G...CCU.............................GA.CC...GA.A....G.A.....C.C...A.A...C....U..G..AA
   NZ_LS483377.1     UC.C...G...U.G...G...C...C...G.U....A.....C...U...G....A......C....A...C....C...U........U...C...G..A...C......G.........G...C............GACAUGAUCUACAU.............................................CCAG..G.GC..C..A..CU....CC..G.C.GC..CG.G....G..G.A..U.C...U.AC...GG..C..C..GC....G..CGU...ACGUG..GAA.G..GCC.G...CAU............................cGA.UC...CA.-....G.C.....G.C...G.C...A....U..G..GA
   NZ_LS483422.1     UC.C...G...U.G...C...U...C...A.U....A.....A...U...A....A......C....A...A....U...G........A...U...G..G...C......G.........G...C............GACCUUGUAUUUUU.............................................CCAA..G.GC..C..A..UA....UC..U.C.CC..CA.G....G..U.A..U.U...U.AU...GC..A..C..GU....G..CCU...UUUUA..GAA.G..GUC.G...AUU.............................AA.CU...GA.A....G.A.....G.C...A.G...A....U..G..AA
   NZ_LS483429.1     UU.A...A...A.G...C...C...-...G.C....A.....A..cA...G....A......G....A...A....A...A........A...C...G..G...U......G.........G...C............GACUUAAUUUUCUU.............................................CCAA..G.GC..C..A..UG....CA..G.C.AC..CA.G....G..U.A..U.G...U.AU...GC..G..C..GU....G..CUU...UCUUA..GAA.G..GUC.G...UUU.............................AA.CU...GA.A....G.A.....A.C...A.A...A....U..G..GA
   NZ_LS483443.1     UC.A...A...A.G...C...G...G...C.A....A.....C...A...G....A......G....A...A....A...A........A...C...G..G...U......G.........G...U............GACUUAGUCUUCUU.............................................CCAA..G.GC..C..A..CG....CG..G.C.GC..CG.G....G..G.A..U.G...U.AU...GC..U..C..GU....G..CUU...UCCUA..GAA.G..GAC.G...UUU.............................AA.CG...GA.A....G.A.....G.C...A.A...U....U..A..GA
   NZ_LS483458.1     UC.A...A...A.G...C...A...G...C.A....A.....C...C...G....A......G....A...A....A...A........A...C...G..G...U......G.........G...C............GACUUAAUUUUCUU.............................................CCAA..G.GC..C..A..UG....CU..G.C.UC..CG.G....G..U.A..U.G...U.AU...GC..G..C..GU....G..CAU...UCUUA..GAA.G..GUC.G...UUU.............................AA.CU...GA.A....G.A.....A.C...A.A...A....U..G..GA
   NZ_LS483464.1     UC.A...A...-.-...-...A...G...G.U....A.....A...G...G....Ac....g-c.ccC...A....G...G........A...-...G..G...C......G.........G...C............GACCAGGUCUUCUU.............................................CCAA..G.GG..C..A..CG....CA..U.C.GC..CC.G....G..C.A..U.G...U.AC...GC..A..C..GC....G..CCU...UCCUC..GAG.G..GUC.G...CCU.............................GA.CC...GA.G....G.A.....-.U...G.A...C....U..U..GG
   NZ_LS483468.1     UC.C...G...C.G...-...-...-...G.C....A.....A...G...G....A......C....C...AucccG...G........-...C...G..G...C......G.........G...C............GACCAGGUCUUCAU.............................................CCAG..G.GC..C..A..CG....CC..U.C.CC..CC.G....G..C.A..U.C...U.AU...GC..C..C..GC....G..CGU...ACCUC..GAG.G..GCC.G...CAU.............................CC.CC...GC.G....G.A.....A.C...A.G...C....U..C..GA
   NZ_LS483470.1     UC.C...G...C.G...C...G...C...G.U....A.....A...C...G....C......C....A...A....A...G........A...C...G..G...C......G.........G...C............GAUCUGGUUUACUU.............................................CCAG..G.GC..C..A..UA....UC..U.C.UC..CG.G....G..G.A..U.C...U.AU...GC..C..C..GC....G..CCU...UCCUU..GAA.G..GCC.G...CCU.............................AA.CA...GA.A....G.A.....U.C...A.G...A....U..G..AA
   NZ_LS999205.1     UC.C...A...G.G...C...C...C...C.G....A.....C...C...G....A......C....G...A....A...C........A...C...G..G...C......G.........G...C............GACCUGAUCUACUU.............................................CCAG..G.GU..C..A..CG....--..-.C.AU..CG.C....C..A.G..GcG...U.CUa.cGC..C..C..GU....G..CGU...UCAUG..GAA.G..GCC.G...CAU.............................CA.CC...GA.A....G.A.....C.C...A.G...A....U..G..AA
   NZ_LT615228.1     GG.C...A...U.G...C...A...C...C.Au.caA.....A...U...G....A......A....C...-....-...-........A...U...G..G...U......G.........G...U............GACCUGAUUUUUGU.............................................UCAG..G.GA..C..A..CU....CU..G.C.AC..CA.G....G..C.G..U.C...U.AU...GC..C..C..GG....G..CUU...ACAUG..UUG.G..GCC.G...UUU.............................AG.CA...GA.U....G.A.....G.C...A.A...C....U..G..AA
   NZ_LT615367.1     UC.C...G...C.G...C...C...C...G.U....A.....A...U...G....C......A....C...A....G...G........A...U...G..G...C......G.........G...U............GAUCUGGUGUUCUU.............................................CCAG..G.GC..C..A..UA....UU..U.C.UC..CC.G....G..U.G..U.U...U.AC...GC..G..C..GU....G..CUU...UCCUU..GAA.G..GCC.G...CCU.............................GA.CC...GA.A....G.A.....G.C...A.G...A....U..G..AA
   NZ_LT635457.1     UC.C...G...C.G...G...-...-...-.A....A.....A...G...G....A......C....C...Ac.ccC...G........G...C...G..G...C......G.........G...C............GACCACGUGUUCUU.............................................CCAA..G.GC..C..A..CG....CC..U.C.CC..CC.G....G..C.C..C.C...U.AC...GC..C..C..GC....G..CCU...UCAUC..GAG.G..GAC.G...UCU.............................CU.CC...GA.A....G.A.....A.C...A.G...A....U..G..GA
   NZ_LT828648.1     UC.C...G...U.G...G...A...-...-.-....A.....A...G...G....Ac...caU...cC...C....G...G........-...C...G..G...A......G.........G...C............GACCUCGUCUACUU.............................................CCAG..G.GC..C..A..UG....CC..G.U.UC..CC.G....G..C.A..U.C...U.AU...GC..G..C..GC....G..GCU...UCGUC..GAA.G..GCC.G...CCU.............................GU.CC...GA.A....G.G.....A.U...C.G...C....U..G..CA
   NZ_LT853882.1     GG.C...G...U.G...C...G...C...C.C....U.....C...G...G....A......C....A...C....G...C........A...U...C..C...G......G.........G...C............GACCUGCUGUUCAU.............................................UCAG..G.GU..C..A..CA....GC..G.C.CC..CG.G....G..C.A..U.C...U.AC...GC..A..C..GC....G..CCU...UCCUC..GAA.G..GCC.G...CAU.............................CA.CC...CA.G....G.C.....C.C...A.G...C....U..G..GA
   NZ_LT855380.1     UU.C...G...U.G...G...U...C...G.C....A.....C...C...G....A......G....C...A....G...U........U...U...G..C...C......G.........G...U............GAUCUGGUUUACAU.............................................CCAG..G.GC..C..A..UU....CU..U.C.GC..CG.G....G..A.A..U.C...U.AU...GG..C..C..GG....G..CGU...AUCUG..GAA.G..GCC.G...CCU.............................GA.GC...GA.G....G.A.....G.C...A.A...C....U..G..GA
   NZ_LT897836.1     UU.A...G...A.G...C...G...C...G.C....A.....A...U...G....A......U....A...A....A...G........A...U...G..G...U......G.........G...U............GACAUGGUCUAUUU.............................................CCAG..G.GC..C..A..CA....UA..U.C.CC..CU.G....G..U.A..U.A...U.AU...GC..C..A..GA....G..CCU...UCCUU..GAA.G..GAC.G...CCU.............................CA.GC...GA.A....G.A.....U.C...A.G...A....U..G..AA
   NZ_LT906434.1     UC.U...G...G.A...A...A...G...C.C....A.....A..aG...G....C......-....-...-....-...G........A...C...G..G...C......Gaag...aggG...C............GAUAUGGUAUUUAU.............................................CCAA..G.GC..C..A..CU....CA..G.C.CC..CC.G....G..U.A..U.U...U.AU...GC..C..C..GU....G..CUU...UCGUU..GAA.G..GCC.G...UCU.............................GA.CC...GA.A....G.A.....G.C...A.G...C....U..C..GA
   NZ_LT906435.1     UC.C...G...U.G...G...C...C...G.C....A.....C...C...G....A......U....A...C....G...U........U...C...G..A...C......G.........G...C............GACAUGAUCUACGU.............................................GCAG..G.GG..C..A..UU....CC..G.C.GC..CG.G....G..C.A..U.C...U.AU...GC..A..C..GC....G..CUU...AUGUC..GAA.G..GAC.G...---cau...................cacg...--.--...CA.G....G.C.....G.C...A.G...C....U..C..GA
   NZ_LT906448.1     UU.A...A...A.G...C...U...C...G.C....U.....C...A...G....C......U....A...A....A...A........A...U...G..G...U......G.........G...U............GACUUAGUUUUCUU.............................................CCAA..G.GA..C..A..UA....UU..U.C.AC..CA.G....G..U.A..U.U...U.AU...GC..C..C..GU....G..CAU...UCUUA..GAA.G..GUC.G...UUU.............................AA.CU...GA.A....G.A.....A.C...A.A...A....U..G..GA
   NZ_LT906451.1     UC.A...A...A.G...G...A...C...C.A....A.....A...G...G....G......A....G...A....A...A........A...U...G..G...U......G.........G...G............GAUUUAAUUUAUUU.............................................CCAA..G.GA..C..A..UU....CU..U.C.CC..CA.G....G..A.A..U.C...U.AC...GC..A..C..GU....G..CCU...UUCUG..GAA.G..GGC.G...AUU.............................GU.CU...GA.G....G.A.....A.C...A.A...U....U..A..GA
   NZ_LT906453.1     UC.C...G...C.G...-...-...-...G.C....C.....A...G...G....A......C....C...Ac.ccC...G........G...U...G..G...C......G.........G...U............GACCAGAUCUUCUU.............................................CCAG..G.GU..C..A..CG....CU..U.C.CC..CG.G....G..C.A..U.G...U.AC...GC..C..C..GC....G..CCU...UCCUC..GAA.G..GAC.G...CCU.............................GA.GC...GA.A....G.A.....C.C...G.U...C....U..U..GA
   NZ_LT906467.1     UC.C...A...G.G...-...-...-...G.C....A.....A...G...G....Ac...gcC....G...A....G...C........A...C...G..G...C......G.........G...C............GACCAGGUCUUCUU.............................................CCAG..G.GU..C..A..CG....CC..U.C.CC..CC.G....G..C.A..U.G...U.AU...GC..C..C..GC....G..CCU...UCCUC..GAA.G..GCC.G...CCU.............................GA.GC...GA.G....G.A.....-.C...G.A...C...cU..C..GA
   NZ_LT906479.1     UC.C...G...C.G...C...A...C...G.C....A.....A...C...G....A......G....C...A....A...G........A...C...G..G...C......G.........G...C............GAUCUGGUUUACUU.............................................CCAG..G.GC..C..A..CA....UC..U.C.UC..CG.G....G..C.G..U.U...U.AC...GC..G..C..GC....G..CCU...UCCUU..GAA.G..GCC.G...UCU.............................CA.CC...GA.A....G.A.....A.C...A.A...A....U..G..AA
   NZ_LT907988.1     UC.U...G...-.G...C...A...C...G.C....-.....-...C...G....A......Gu.ccG...A....G...Ga.....ccA...C...G..G...C......G.........G...C............GACCUGGUCUAUUU.............................................CCAG..G.GC..C..A..CA....CC..U.C.GC..CG.G....G..C.A..U.G...U.AC...GG..C..C..GC....G..CCU...ACCUC..GAA.G..GCC.G...CCU.............................GA.CC...GA.A....G.A.....G.C...A.A...C....U..G..GA
   NZ_OU594967.1     UU.C...G...U.G...C...A...C...C.U....A.....A...C...G....A......A....A...A....A...G........A...U...G..G...U......G.........G...C............GAUUUAGUUUAUUA.............................................UCAG..G.GA..C..A..UA....UC..U.C.UC..CA.G....G..G.A..U.C...U.AU...UC..U..C..GC....G..CUU...UUGUU..GAA.G..GCC.G...UUU.............................GA.GU...GC.U....G.A.....A.C...A.G...C....U..G..GA
   NZ_OU912926.1     UC.C...A...U.G...G...C...A...A.G....A.....C...U...G....A......A....A...A....U...C........A...C...G..G...C......G.........G...U............GACCUGGUUUAUUU.............................................CCAG..G.GA..C..A..UG....CA..U.C.GC..CC.G....G..C.A..U.G...U.AC...GC..A..C..GC....G..CUU...UUCUU..GAA.G..GGC.G...CCU.............................CA.GC...GA.G....G.A.....G.C...A.A...U....U..G..UA
   NZ_OW485601.1     GG.C...G...C.G...C...C...C...C.U....A.....C...C...G....A......C....C...G....C...C........A...G...G..G...C......G.........G...C............GACCUGGUCUAUAU.............................................CCAG..G.GC..C..A..CA....GC..U.C.GC..CG.G....G..C.A..U.C...U.AC...GC..C..C..GC....G..CCU...UCGUC..GAA.G..GCC.G...GCU.............................GA.AC...GA.G....G.C.....G.C...A.A...U....U..G..CU


   Structure         ((.(...(...(.(...(...(...(...(.(..............(...(....................(....(...(............(...(..(...(...................................(((((....................................................))))..).))..)..)........))..).......))......)..).)..).)...).))...((..(.....((.............(((((......(..(((.....................................)).))...)).)....).).....).)...).)...).......)..))


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pdhR-aceE-aceF-lpd



Position: 1365-1454, Conformation: #1







97% 90% 75% 50% Nucleotide present N N N Nucleotide identify E < 0.1 Base-pair covariation E < 0.05 Helix-level covariation 97% 90% 75%

U Y C R G R G A R Y G G Y G G Y G A Y Y G R U U Y U C C A R G G Y C A Y Y Y C C C G G Y R U U A Y G C C G Y G C U U Y Y U G A R G G Y C G Y U R Y G A R G A C A R Y U R A 5'