pck



Position: 791-900, Conformation: #0







DMS reactivity > 1.0 0.0 0.4 0.7 G/U/No data
Position: 0 (position.label in template: 0.5')5' Position: 1 (position.label in template: 1.A) Reactivity: nanA Position: 2 (position.label in template: 2.A) Reactivity: nanA Position: 3 (position.label in template: 3.G) Reactivity: nanG Position: 4 (position.label in template: 4.A) Reactivity: nanA Position: 5 (position.label in template: 5.A) Reactivity: nanA Position: 6 (position.label in template: 6.A) Reactivity: nanA Position: 7 (position.label in template: 7.G) Reactivity: nanG Position: 8 (position.label in template: 8.G) Reactivity: nanG Position: 9 (position.label in template: 9.G) Reactivity: nanG Position: 10 (position.label in template: 10.A) Reactivity: nanA Position: 11 (position.label in template: 11.U) Reactivity: nanU Position: 12 (position.label in template: 12.G) Reactivity: nanG Position: 13 (position.label in template: 13.U) Reactivity: nanU Position: 14 (position.label in template: 14.U) Reactivity: nanU Position: 15 (position.label in template: 15.C) Reactivity: nanC Position: 16 (position.label in template: 16.U) Reactivity: nanU Position: 17 (position.label in template: 17.C) Reactivity: nanC Position: 18 (position.label in template: 18.G) Reactivity: nanG Position: 19 (position.label in template: 19.A) Reactivity: nanA Position: 20 (position.label in template: 20.U) Reactivity: nanU Position: 21 (position.label in template: 21.G) Reactivity: nanG Position: 22 (position.label in template: 22.A) Reactivity: nanA Position: 23 (position.label in template: 23.U) Reactivity: nanU Position: 24 (position.label in template: 24.G) Reactivity: nanG Position: 25 (position.label in template: 25.A) Reactivity: nanA Position: 26 (position.label in template: 26.A) Reactivity: nanA Position: 27 (position.label in template: 27.C) Reactivity: nanC Position: 28 (position.label in template: 28.U) Reactivity: nanU Position: 29 (position.label in template: 29.A) Reactivity: nanA Position: 30 (position.label in template: 30.C) Reactivity: nanC Position: 31 (position.label in template: 31.C) Reactivity: nanC Position: 32 (position.label in template: 32.U) Reactivity: nanU Position: 33 (position.label in template: 33.G) Reactivity: nanG Position: 34 (position.label in template: 34.C) Reactivity: 1C Position: 35 (position.label in template: 35.U) Reactivity: nanU Position: 36 (position.label in template: 36.G) Reactivity: nanG Position: 37 (position.label in template: 37.C) Reactivity: 0C Position: 38 (position.label in template: 38.C) Reactivity: 0C Position: 39 (position.label in template: 39.G) Reactivity: nanG Position: 40 (position.label in template: 40.C) Reactivity: 0C Position: 41 (position.label in template: 41.U) Reactivity: nanU Position: 42 (position.label in template: 42.G) Reactivity: nanG Position: 43 (position.label in template: 43.A) Reactivity: 1A Position: 44 (position.label in template: 44.A) Reactivity: 0.5A Position: 45 (position.label in template: 45.A) Reactivity: 0A Position: 46 (position.label in template: 46.G) Reactivity: nanG Position: 47 (position.label in template: 47.G) Reactivity: nanG Position: 48 (position.label in template: 48.U) Reactivity: nanU Position: 49 (position.label in template: 49.A) Reactivity: 0A Position: 50 (position.label in template: 50.U) Reactivity: nanU Position: 51 (position.label in template: 51.C) Reactivity: 0.5C Position: 52 (position.label in template: 52.G) Reactivity: nanG Position: 53 (position.label in template: 53.C) Reactivity: 0C Position: 54 (position.label in template: 54.U) Reactivity: nanU Position: 55 (position.label in template: 55.U) Reactivity: nanU Position: 56 (position.label in template: 56.C) Reactivity: 1C Position: 57 (position.label in template: 57.U) Reactivity: nanU Position: 58 (position.label in template: 58.A) Reactivity: 0.5A Position: 59 (position.label in template: 59.U) Reactivity: nanU Position: 60 (position.label in template: 60.G) Reactivity: nanG Position: 61 (position.label in template: 61.C) Reactivity: 0.5C Position: 62 (position.label in template: 62.A) Reactivity: 0A Position: 63 (position.label in template: 63.C) Reactivity: 0.5C Position: 64 (position.label in template: 64.U) Reactivity: nanU Position: 65 (position.label in template: 65.G) Reactivity: nanG Position: 66 (position.label in template: 66.C) Reactivity: 0C Position: 67 (position.label in template: 67.U) Reactivity: nanU Position: 68 (position.label in template: 68.C) Reactivity: 0C Position: 69 (position.label in template: 69.C) Reactivity: 0C Position: 70 (position.label in template: 70.G) Reactivity: nanG Position: 71 (position.label in template: 71.C) Reactivity: 0C Position: 72 (position.label in template: 72.C) Reactivity: 0C Position: 73 (position.label in template: 73.A) Reactivity: 0A Position: 74 (position.label in template: 74.A) Reactivity: 0A Position: 75 (position.label in template: 75.C) Reactivity: 1C Position: 76 (position.label in template: 76.G) Reactivity: nanG Position: 77 (position.label in template: 77.U) Reactivity: nanU Position: 78 (position.label in template: 78.U) Reactivity: nanU Position: 79 (position.label in template: 79.G) Reactivity: nanG Position: 80 (position.label in template: 80.G) Reactivity: nanG Position: 81 (position.label in template: 81.U) Reactivity: nanU Position: 82 (position.label in template: 82.G) Reactivity: nanG Position: 83 (position.label in template: 83.A) Reactivity: 0.5A Position: 84 (position.label in template: 84.G) Reactivity: nanG Position: 85 (position.label in template: 85.A) Reactivity: 0.5A Position: 86 (position.label in template: 86.A) Reactivity: 1A Position: 87 (position.label in template: 87.A) Reactivity: 0.5A Position: 88 (position.label in template: 88.G) Reactivity: nanG Position: 89 (position.label in template: 89.G) Reactivity: nanG Position: 90 (position.label in template: 90.C) Reactivity: 0C Position: 91 (position.label in template: 91.G) Reactivity: nanG Position: 92 (position.label in template: 92.A) Reactivity: 0.5A Position: 93 (position.label in template: 93.U) Reactivity: nanU Position: 94 (position.label in template: 94.G) Reactivity: nanG Position: 95 (position.label in template: 95.U) Reactivity: nanU Position: 96 (position.label in template: 96.U) Reactivity: nanU Position: 97 (position.label in template: 97.G) Reactivity: nanG Position: 98 (position.label in template: 98.C) Reactivity: 0C Position: 99 (position.label in template: 99.G) Reactivity: nanG Position: 100 (position.label in template: 100.G) Reactivity: nanG Position: 101 (position.label in template: 101.U) Reactivity: nanU Position: 102 (position.label in template: 102.G) Reactivity: nanG Position: 103 (position.label in template: 103.U) Reactivity: nanU Position: 104 (position.label in template: 104.U) Reactivity: nanU Position: 105 (position.label in template: 105.C) Reactivity: 0.5C Position: 106 (position.label in template: 106.U) Reactivity: nanU Position: 107 (position.label in template: 107.U) Reactivity: nanU Position: 108 (position.label in template: 108.C) Reactivity: 0C Position: 109 (position.label in template: 109.G) Reactivity: nanG Position: 110 (position.label in template: 110.G) Reactivity: nanG Position: 111 (position.label in template: 111.C) Reactivity: 0.5C Position: 112 (position.label in template: 112.C) Reactivity: 0C Position: 113 (position.label in template: 113.U) Reactivity: nanU Position: 114 (position.label in template: 114.U) Reactivity: nanU Position: 115 (position.label in template: 115.U) Reactivity: nanU Position: 116 (position.label in template: 116.C) Reactivity: 1C Position: 117 (position.label in template: 117.C) Reactivity: 0.5C Position: 118 (position.label in template: 118.G) Reactivity: nanG Position: 119 (position.label in template: 119.G) Reactivity: nanG Position: 120 (position.label in template: 120.C) Reactivity: nanC Position: 121 (position.label in template: 121.A) Reactivity: nanA Position: 122 (position.label in template: 122.C) Reactivity: nanC Position: 123 (position.label in template: 123.C) Reactivity: nanC Position: 124 (position.label in template: 124.G) Reactivity: nanG Position: 125 (position.label in template: 125.G) Reactivity: nanG Position: 126 (position.label in template: 126.U) Reactivity: nanU Position: 127 (position.label in template: 127.A) Reactivity: nanA Position: 128 (position.label in template: 128.A) Reactivity: nanA Position: 129 (position.label in template: 129.A) Reactivity: nanA Position: 130 (position.label in template: 130.A) Reactivity: nanA Position: 131 (position.label in template: 131.C) Reactivity: nanC Position: 132 (position.label in template: 132.C) Reactivity: nanC Position: 133 (position.label in template: 133.A) Reactivity: nanA Position: 134 (position.label in template: 134.C) Reactivity: nanC Position: 135 (position.label in template: 135.C) Reactivity: nanC Position: 136 (position.label in template: 136.C) Reactivity: nanC Position: 137 (position.label in template: 137.U) Reactivity: nanU Position: 138 (position.label in template: 138.U) Reactivity: nanU Position: 139 (position.label in template: 139.U) Reactivity: nanU Position: 140 (position.label in template: 140.C) Reactivity: nanC Position: 141 (position.label in template: 141.C) Reactivity: nanC Position: 142 (position.label in template: 142.A) Reactivity: nanA Position: 143 (position.label in template: 143.C) Reactivity: nanC Position: 144 (position.label in template: 144.C) Reactivity: nanC Position: 145 (position.label in template: 145.G) Reactivity: nanG Position: 146 (position.label in template: 146.A) Reactivity: nanA Position: 147 (position.label in template: 147.C) Reactivity: nanC Position: 148 (position.label in template: 148.C) Reactivity: nanC Position: 149 (position.label in template: 149.C) Reactivity: nanC Position: 150 (position.label in template: 150.G) Reactivity: nanG Position: 151 (position.label in template: 151.3')3' 10 20 30 50 100


pck



Position: 791-900, Conformation: #0







Retained alignments:


   NC_002570.2       A...A.A.GU.C.G.....A.....UU...UU.U..U..CU...G...U.U..AU....................................GAA.CUAC.C.U.CCU.UCC...A...G...A...G...C.A......................................A..G..A..U..G..U....C..UU...A...U...C...G.....AU.....................GC....AUUGUU...CAGCCAA...UGU............................UG..G...G.G....U...AG...AA....G.G..UG..A...U...G.U.....................................CGC...U.C...UA...UU...U...U...U...CGGGUUGUCG.................GGUACA.GGA.AA...A....................ACAA....CC.C.UA.UC
   NC_003317.1       G...A.A.GU.C.C.....G.....U-...--.-..-..--...-...-.-..--cuucaccgcgc.............ucaacuauaucc---.----.-.-.--U.GCC...-...-...-...-...-.-ugc..............................caa..G..G..G..C..G..U....U..AU...G...C...C...G.....AU.....................GC....ACUGCU...CGGCCAA...UGA............................AG..G...C.C....C...GA...AC....G.G..CG..A...C...A.C.....................................GGC...G.G...UU...UU...C...U...U...CGGUCUUUCG.................GGCACC.GGC.AA...G....................ACCA....CG.C.UU.UC
   NC_003869.1       A...A.A.AU.C.C.....A.....UA...UU.C..A..CC...U...U.A..AU....................................GAA.CUAC.C.U.UAU.GCC...U...A...A...A...A.A......................................A..G..G..C..G..U....G..CU...U...U...C...C.....AU.....................GC....AUUGUU...CUGCUAA...UAU............................AG..G...A.A....A...AG...AC....G.G..UG..A...C...A.C.....................................AGC...C.C...UU...UU...C...U...U...CGGCCUCUCC.................GGUACA.GGA.AA...G....................ACCA....CU.C.UC.UC
   NC_003910.7       A...A.A.AG.G.U.....A.....UG...UU.C..U..CA...A...U.G..AU....................................GAA.CUAC.U.A.CCU.UCC...A...U...U...A...C.A......................................A..G..G..C..A..U....U..GC...U...U...C...A.....AU.....................GC....AUUGUA...GUGCAAA...CGU............................UG..G...U.G....A...AG...AU....G.G..UG..A...C...A.C.....................................UGC...U.A...UC...UU...C...U...U...CGGUUUGUCU.................GGCACA.GGU.AA...A....................ACAA....CA.C.UU.UC
   NC_003911.12      G...A.A.GU.C.G.....G.....UG...UU.C..A..CC...C...U.G..CU....................................GAA.CUAC.A.U.GCU.GCC...G...G...A...A...A.A......................................A..G..G..C..G..U....G..AU...G...C...C...G.....AU.....................GC....ACUGCU...CGGCCAA...C--ca......................cg..CG..G...U.C....G...GC...AAcccgG.U..CG..A...C...A.C.....................................CGC...C.G...UG...UU...C...U...U...UGGCCUUAGC.................GGCACC.GGC.AA...G....................ACCA....CG.C.UG.UC
   NC_004193.1       -...A.A.AG.U.C....cA.....UU...UU.U..U..CU...G...U.G..AU....................................GAA.UUAU.U.U.AUU.ACC...A...C...A...G...C.A......................................A..G..A..U..G..U....G..CU...U...U...C...U.....AU.....................GC....AUUGCU...CCGCUAA...UGU............................AG..G...C.C....A...GG...AA....G.G..UG..A...C...G.U.....................................UGC...A.U...UA...UU...U...U...U...CGGGUUAUCA.................GGUACC.GGG.AA...A....................ACGA....CA.U.UA.UC
   NC_004347.2       A...A.A.GU.C.G.....A.....UG...UU.C..U..CG...G...U.G..CA....................................AAA.CUUC.C.U.AUU.GCC...A...G...C...A...C.A......................................A..G..G..U..G..U....A..UU...A...C...C...A.....AU.....................GC....ACUGCU...CGGCUAA...CGU............................AG..G...U.A....A...AG...AC....G.G..CG..A...C...A.C.....................................CAC...C.C...UA...UU...C...U...U...CGGUCUGUCA.................GGUACA.GGA.AA...A....................ACCA....CC.C.UG.UC
   NC_004578.1       G...A.A.AG.C.C.....A.....UG...UU.C..U..CG...G...U.G..CA....................................GAA.CUUC.C.U.GCU.GCC...G...G...C...C...G.-u.................................ag..A..C..G..U..A..C....U..GC...-...-...C...G.....AU.....................GC....ACUGCG...CUGCCAA...CAU............................GG..G...C.G....A...AG...AG....G.G..UG..A...U...G.U.....................................AAC...C.C...UG...UU...C...U...U...CGGCCUGUCC.................GGCACC.GGC.AA...G....................ACCA....CC.C.UG.UC
   NC_004603.1       G...A.A.AG.G.C.....A.....UG...UU.C..G..CG...A...U.G..AU....................................GAA.CUAC.U.U.CCU.UCC...U...C...U...G...A.A......................................A..G..A..C..A..U....C..GC...U...U...C...G.....AU.....................GC....ACUGUA...GUGCCAA...CAU............................GG..G...C.A....A...AG...AC....G.G..CG..A...C...G.U.....................................AGC...A.G...UA...UU...C...U...U...CGGCCUAUCU.................GGUACA.GGU.AA...A....................ACAA....CA.C.UC.UC
   NC_005126.1       G...A.A.AG.G.G.....A.....UG...UU.C..U..CU...A...U.G..AU....................................GAA.CUAC.C.U.GUU.GCC...A...C...U...G...A.A......................................A..G..G..U..A..U....U..GC...C...U...C...G.....AU.....................GC....ACUGUU...CUGCCAA...UGU............................GG..G...U.G....A...GA...AA....G.G..GG..A...U...G.U.....................................UGC...G.G...UC...UU...C...U...U...CGGCUUGUCU.................GGUACA.GGU.AA...A....................ACCA....CA.C.UU.UC
   NC_006461.1       G...A.A.GA.G.C.....A.....UC...UU.C..A..CC...G...U.C..AU....................................GAA.CUAC.C.U.CAU.GCC...C...A...A...G...C.G......................................G..G..G..G..G..U....C..UU...C...C...C...C.....AU.....................GC....ACGCCU...CGGCCAA...CGU............................GG..G...A.A....A...GG...AA....G.G..GG..A...C...G.U.....................................GGC...G.G...UC...UU...C...U...U...CGGCCUCUCC.................GGCACC.GGC.AA...G....................ACCA....CC.C.UC.UC
   NC_006512.1       A...A.A.AG.G.U.....A.....UG...UU.C..U..CA...A...U.G..AU....................................GAA.CUAC.U.U.CCU.GCC...G...C...U...A...A.A......................................A..G..G..C..A..U....U..GC...U...U...C...U.....AU.....................GC....AUUGCU...CUGCCAA...CGU............................UG..G...U.C....A...AG...AA....G.G..CG..A...C...G.U.....................................AGC...U.G...UU...UU...C...U...U...CGGCUUGUCA.................GGCACG.GGU.AA...A....................ACCA....CC.C.UG.UC
   NC_007406.1       G...A.A.AA.G.C.....A.....UC...UU.C..A..CC...A...C.G..CU....................................GAA.UUAU.-.-.---.---...-...-...-...-...-.-uaccuuccc..................gaucaggac..-..-..G..U..G..U....U..GC...-...-...C...G.....AU.....................GC....ACUGUU...CGGCCAA...UGU............................CG..G...U.C....C...CG...GC....G.G..CG..A...C...A.G.....................................CGC...G.A...UU...UU...C...U...U...CGGACUGUCG.................GGUACG.GGU.AA...A....................ACCA....CG.C.UG.UC
   NC_007481.1       A...A.A.AU.C.A.....A.....UG...UU.C..U..CU...G...U.A..CA....................................GAA.CUUC.C.U.ACU.UCC...A...G...C...G...A.A......................................A..G..G..U..G..U....A..UU...A...C...C...A.....AU.....................GC....ACUGCU...CUGCAAA...CGU............................AG..G...U.G....A...AG...CA....G.G..CG..A...U...A.C.....................................CGC...U.U...UA...UU...C...U...U...UGGCUUAUCU.................GGUACA.GGU.AA...A....................ACAA....CA.C.UU.UC
   NC_007517.1       A...A.A.AU.C.C.....A.....UC...UU.C..A..CC...A...U.C..CU....................................CAA.CUAC.C.U.CCU.UCC...C...C...A...G...C.-ac................................aa..G..A..A..U..G..U....C..CU...C...U...C...C.....AU.....................GC....AUUGCU...CCGCCAA...CGU............................GG..G...A.G....A...GA...AA....G.A..CG..A...C...G.U.....................................GGC...A.G...UC...UU...C...U...U...CGGCCUUUCC.................GGCACC.GGC.AA...G....................ACCA....CC.C.UC.UC
   NC_007530.2       A...A.A.AU.C.A.....A.....UC...UU.C..U..CU...A...U.U..AU....................................GAA.CUUC.U.U.ACU.ACC...U...G...A...A...C.A......................................A..G..A..U..A..U....U..CU...U...U...C...U.....AU.....................GC....AUUGCU...CUGCAAA...CGU............................AG..G...U.G....A...AG...AA....G.G..CG..A...C...G.U.....................................AGC...A.C...UA...UU...C...U...U...CGGUUUAUCU.................GGAACA.GGU.AA...A....................ACAA....CA.U.UA.UC
   NC_007575.1       A...A.A.AG.G.A.....A.....UU...UU.U..U..CA...A...U.G..AU....................................GAA.CUAC.U.G.GCU.GCC...A...C...U...A...C.A......................................A..A..A..U..A..A....-..GC...U..cU...C...U.....AU.....................GC....ACUGCU...CUGCAAA...UGU............................GG..G...A.G....A...AA...AA....G.G..CG..A...C...A.C.....................................AGC...U.C...UU...UU...C...U...U...UGGGCUUAGC.................GGAACA.GGU.AA...A....................ACUA....CU.C.UC.UC
   NC_007618.1       G...A.A.GU.C.C.....G.....U-...--.-..-..--...-...-.-..--cuucaccgcgc.............ucaacuauaucc---.----.-.-.--U.GCC...-...-...-...-...-.-ugc..............................caa..G..G..G..C..G..U....U..AU...G...C...C...G.....AU.....................GC....ACUGUU...CGGCCAA...UGA............................AG..G...C.C....C...GA...AC....G.G..CG..A...C...A.C.....................................GGC...G.G...UU...UU...C...U...U...CGGUCUUUCG.................GGCACC.GGC.AA...G....................ACCA....CG.C.UU.UC
   NC_007645.1       A...A.A.GG.C.G.....A.....UG...UU.C..U..CC...G...U.A..CA....................................GAA.CUUC.C.U.GCU.GCC...G...G...A...A...A.A......................................A..GacG..U..A..C....U..GC...-...-...C...C.....AU.....................GC....ACUGCU...CCGCCAA...UGU............................CG..G...C.G....A...AG...AC....G.G..UC..A...G...-.-ac..............................au...GCC...-.-...UG...UU...C...U...U...CGGCUUGUCC.................GGCACC.GGC.AA...A....................ACCA....CG.C.UG.UC
   NC_007712.1       A...A.-.AG.G.G....cC.....UG...UU.C..U..CG...G...U.G..AU....................................GAA.UUAC.C.U.GCU.GCC...G...C...U...U...A.A......................................A..G..G..A..A..U....C..GC...U...U...C...C.....AU.....................GC....AUUGCU...CGGCCAA...CGU............................CG..G...C.A....C...CG...AU....G.A..CG..A...C...G.U.....................................GGC...A.C...UG...UU...C...U...U...CGGUCUGUCC.................GGCACC.GGC.AA...A....................ACCA....CG.C.UA.UC
   NC_007794.1       G...A.A.AU.C.G.....G.....UC...UU.C..G..GC...A...U.C..CU....................................CAA.CUAC.C.U.GCU.GCC...G...G...U...A...A.A......................................G..G..G..C..G..U....G..AU...G...C...C...G.....AU.....................GC....ACUGCU...CGGCCAA...CGU............................CG..G...C.C....C...CG...AC....G.G..CA..A...G...A.C.....................................CGC...C.G...UA...UU...C...U...U...CGGCCUUUCC.................GGCACC.GGC.AA...G....................ACCA....CG.C.UU.UC
   NC_007912.1       A...A.A.AG.G.C.....A.....UG...UU.C..U..CG...G...U.A..AU....................................GAA.UUAU.U.A.CUU.GCC...A...C...U...A...C.A......................................U..G..G..C..C..G....A..GC...C...U...C...C.....AU.....................GC....ACGCCU...CUGCCAA...UGU............................UG..G...U.A....G...CG...AU....G.G..CG..A...U...G.U.....................................GGC...C.G...UU...UU...C...U...U...UGGCUUGUCU.................GGCACG.GGC.AA...A....................ACAA....CA.C.UC.UC
   NC_007954.1       A...A.A.AU.C.C.....A.....UG...UU.C..U..CG...G...U.A..CA....................................GAA.CUUC.C.U.CUU.GCC...A...G...C...C...A.A......................................A..G..G..C..G..U....A..UU...G...C...C...U.....AU.....................GC....ACUGCU...CGGCCAA...CGU............................AG..G...U.C....A...AG...AU....G.G..CG..A...C...A.C.....................................CAC...G.U...UA...UU...C...U...U...UGGUCUAUCG.................GGCACA.GGC.AA...G....................ACCA....CC.U.UG.UC
   NC_007963.1       G...A.A.GG.C.G.....A.....UG...UU.C..U..CG...G...U.G..CA....................................GAA.CUUC.C.U.GCU.GCC...C...G...A...G...A.A......................................A..G..A..C..G..U....U..CU...G...C...C...C.....AU.....................GC....ACUGCA...GCGCCAA...CGU............................GG..G...C.G....A...GG...AC....G.G..CG..A...G...A.C.....................................CAC...G.C...UG...UU...C...U...U...CGGUCUCUCG.................GGCACC.GGC.AA...G....................ACCA....CG.C.UG.UC
   NC_007964.1       G...A.A.GA.G.C.....A.....UC...UU.C..A..CC...A...C.G..CU....................................GAA.UUAC.U.A.UCU.GCC...C...G...A...C...A.A......................................C..G..G..C..G..U....-..GC...U...G..cC...G.....AU.....................GC....ACUGCU...CGGCCAA...UGU............................CG..G...U.C....C...CG...AG....G.G..UG..A...C...A.G.....................................CAC...G.A...UC...UU...C...U...U...CGGCCUCUC-.................GGGAAC.GGGaAA...A....................ACCA....CG.U.UG.UC
   NC_008025.1       -...-.-.GG.G.G.....A.....UC...UU.C..G..GC...G...U.G..CU....................................GAA.CUAC.C.U.GCU.UCC...G...C...A...G...C.G......................................G..G..G..C..G..U....G..AU...G...C...C...G.....AU.....................GC....ACUGCU...CGGCCAA...UAU............................GG..G...C.G....A...GG...AC....G.G..CG..A...C...G.U.....................................GGC...G.C...UG...UU...C...U...U...CGGCCUCAGC.................GGCACC.GGC.AA...G....................ACCA....CC.C.UG.AG
   NC_008048.1       A...A.A.GU.C.G.....G.....UG...UU.C..G..GC...A...U.C..CU....................................GAA.CUAU.C.U.GCU.CCC...G...G...U...A...A.A....................................ggG..G..G..U..G..A....U..GC...-...-...C...G.....AU.....................GC....AUUGUU...CGGCGAA...UAU............................CG..G...G.C....C...CA...GG....G.G..CG..A...C...A.C.....................................CGC...G.G...UC...UU...U...U...U...CGGCCUCAGC.................GGCACC.GGC.AA...G....................ACGA....CG.C.UG.UC
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   NZ_LT906449.1     G...A.A.AG.G.U.....A.....UC...UU.C..U..CA...G...C.A..AU....................................GAA.CUUC.G.A.AAU.GCC...U...G...U...A...U.U......................................C..C..G..C..A..A....C..AC...U...UugcC...A.....AU.....................GC....ACUGUA...GCGCUAA...CGU............................AG..G...U.A....A...GG...CU....G.G..UG..A...U...A.C.....................................UGC...C.A...UU...UU...C...U...U...CGGACUUUCA.................GGUACA.GGU.AA...A....................ACAA....CC.C.UU.UC
   NZ_LT906460.1     A...A.A.AG.G.U.....A.....UU...UU.C..U..CU...G...U.G..AU....................................GAA.UUAU.U.U.AUU.ACC...A...A...U...G...C.A......................................A..G..A..C..A..U....U..AU...G...A...G...C.....AU.....................GC....AUUGUU...CAGCAAA...UGU............................UG..G...A.G....A...AA...AA....G.G..CG..A...U...G.U.....................................UGC...A.U...UA...UU...C...U...U...CGGUUUAUCA.................GGUACA.GGU.AA...A....................ACG-....AC.U.UUaUC
   NZ_LT906462.1     A...A.A.AG.G.U.....A.....UC...UU.C..U..CA...G...U.U..AU....................................GAA.CUAC.C.U.UCU.ACC...U...A...A...A...A.A......................................A..G..G..C..A..U....U..AU...G...A...G...U.....AU.....................GC....AUUGCU...CAGCAAA...UGU............................UG..G...A.U....A...CA...AU....A.A..AG..A...U...G.U.....................................UGC...C.U...UG...UU...C...U...U...CGGUUUAUCA.................GGUACA.GGU.AA...A....................AC-A....AC.U.UU.AU
   NZ_LT906463.1     A...A.A.AG.G.U.....A.....UG...UU.C..U..CU...A...U.G..AU....................................GAA.CUAC.U.U.CCU.ACC...G...C...U...U...A.A......................................A..G..G..U..G..U....G..GG...C...G...C...A.....AU.....................GC....ACUGUU...CUGCCAA...CGU............................AG..G...U.A....A...AG...AC....G.G..CG..A...U...G.U.....................................UGC...U.A...UU...UU...C...U...U...CGGUCUUUCC.................GGUACA.GGU.AA...A....................ACAA....CC.C.UC.UC
   NZ_LT906464.1     A...A.A.AU.C.U.....A.....UC...UU.C..U..CU...G...U.G..AU....................................GAA.CUAC.C.U.ACU.CCC...U...A...A...A...C.G......................................A..G..A..U..A..U....U..AU...G...A...G...U.....AU.....................GC....ACUGUU...CAGCUAA...CGU............................AG..G...A.C....G...CA...AA....G.G..UG..A...U...G.U.....................................UGC...A.U...UA...UU...C...U...U...CGGUUUAUCU.................GGUACU.GGU.AA...A....................AC-A....AC.A.UU.AU
   NZ_LT906479.1     G...A.A.AG.G.C.....C.....UG...UU.C..U..CC...A...U.C..AU....................................GAA.CUAC.C.U.GCU.GCC...G...C...U...G...C.A......................................G..G..G..C..A..U....C..GC...U...U...C...G.....AU.....................GC....ACUGCU...CGGCCAA...CGU............................CG..G...C.G....A...GC...AG....G.G..UG..A...C...G.U.....................................GGC...G.G...UG...UU...C...U...U...CGGCCUGUCC.................GGCACC.GGC.AA...A....................ACCA....CC.C.UG.UC
   NZ_LT960614.1     G...A.A.GU.C.G.....G.....UC...UU.C..A..CC...U...U.C..CU....................................GAA.CUUC.C.U.GUU.GCC...G...G...A...A...A.A......................................G..G..G..C..G..U....G..AU...G...C...C...G.....AU.....................GC....ACUGCU...CGGCCAA...CGU............................CA..G...C.G....U...CG...GC....G.G..GG..A...A...-.-uc..............................gg...CCC...-.-...UC...UU...C...U...U...CGGCCUUUCG.................GGCACC.GGC.AA...G....................ACGA....CG.C.UC.UC
   NZ_LT990039.1     G...A.A.GG.G.U.....A.....UG...UU.C..U..CC...A...U.G..AU....................................GAA.CUAC.U.A.UCU.GCC...G...C...U...G...A.A......................................G..G..G..C..A..U....C..GC...C...U...C...U.....AU.....................GC....ACUGCU...CUGCAAA...UAC............................AG..A...C.A....U...GA...AC....G.G..AG..A...-...-.-gaa............................cac...CGC...A.A...UC...UU...C...U...U...CGGACUGUCC.................GGAACC.GGA.AA...A....................ACCA....CU.C.UG.UC
   NZ_OU015321.1     A...A.A.AG.G.G.....A.....UG...UU.U..G..CA...A...U.G..AU....................................GAA.CUAC.U.A.UCU.UCC...A...U...U...A...A.A......................................A..G..G..A..A..U....G..GC...U...U...C...U.....AU.....................GC....ACUGCU...CUGCAAA...CGU............................AG..G...A.G....A...AG...AA....G.G..UG..A...U...G.U.....................................AGC...A.U...UG...UU...C...U...U...CGGACUUUCU.................GGUACA.GGA.AA...A....................ACUA....CA.C.UU.UC
   NZ_OU015584.1     -...-.A.AG.G.A.....A.....UU...UU.C..U..CU...G...U.A..CU....................................GAA.CUUC.A.U.UCU.UCC...A...C...A...U...G.A......................................G..A..A..A..G..A....C..GU...UcuaU...C...C.....AU.....................GC....ACUGCU...CUGCUAA...CAU............................UG..G...U.G....A...GG...GU....G.G..AG..A...C...A.C.....................................GGC...A.A...UU...UU...C...U...U...CGGACUUUCA.................GGAACU.GGG.AA...G....................ACAA....-C.C.UUgAG
   NZ_OU594967.1     A...A.A.AG.G.G.....A.....UU...UU.U..U..CC...A...U.G..AU....................................GAA.CUAU.U.A.UCU.CCC...G...C...U...A...A.A......................................C..G..G..U..A..U....U..GC...A...G...C...C.....AU.....................GC....ACUGUA...GUGCUAA...CCG............................CG..G...C.C....A...AU...CU....G.G..CG..A...U...G.U.....................................AGC...C.G...UA...UU...U...U...U...CGGUUUGUCA.................GGGACA.GGG.AA...A....................ACUA....CC.U.UG.UC
   NZ_OU701459.1     A...A.A.GG.G.A.....A.....UU...UU.U..U..CC...A...U.G..AU....................................GAA.UUAU.U.G.GCU.ACC...U...U...U...A...G.A......................................A..A..A..U..A..A....A..CU...U...U...C...G.....AU.....................GC....AUUGCA...GUGCUAA...UGU............................CG..G...C.G....A...AA...AG....G.G..CG..A...U...G.U.....................................GGC...U.U...UA...UU...U...U...U...CGGCUUAAGU.................GGGACA.GGU.AA...A....................ACAA....CC.C.UU.UC
   NZ_OU907312.1     -...A.A.AG.G.G.....A....cUG...UU.U..U..CC...G...U.G..AU....................................GAA.CUAC.U.U.AUU.GCC...G...C...A...G...C.G......................................G..G..G..G..A..U....U..GC...C...U...C...G.....AU.....................GC....ACUGCU...CGGCGAA...UGU............................CG..G...A.G....A...UC...AG....G.G..GG..A...U...G.U..................................g.gCGC...U.G...UU...UU...-...-...U...UGGGCUUUCU.................GGGACG.GGG.AA...A....................ACCA....CC.C.UG.UC
   NZ_OW485601.1     G...A.A.AU.C.G.....A.....UC...UU.C..A..CC...G...U.C..AU....................................GAA.CUGG.C.U.GCU.GCC...G...C...C...G...C.A......................................G..G..G..C..G..U....-..GC...U..gC...C...C.....AU.....................GC....AUUGCA...GCGCCAA...UGU............................CG..G...C.C....C...CG...AC....G.G..CG..A...G...G.U.....................................CGC...G.C...UG...UU...C...U...U...CGGCCUGUCC.................GGCACC.GGC.AA...G....................ACCA....CG.C.UC.UC


   Structure         (...(.(.((.(.(............(...((.(.........................................................))).)(((.(.(....................................................................)..)..)..)..)..........((............................................))..............(((((...................................))..)...).).....................(..((..................................................)))...(.(...((...((..........................................)))))).(((...........................))).....)).).)).))


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pck



Position: 791-900, Conformation: #0







97% 90% 75% 50% Nucleotide present N N N Nucleotide identify E < 0.1 Base-pair covariation E < 0.05 Helix-level covariation 97% 90% 75%

R A A R R U U U Y C R U U G A A Y U Y Y U Y U C C R R R R Y R Y Y C A U G C A Y U G Y U C G C A A Y R U G G Y R R A G G Y G A Y R Y G C U U U C U U Y G G Y U U C G G A C G G A A R A C A C Y U U C 5'