nrdR-ribD-ribE-nusB-thiL-pgpA



Position: 1810-1924, Conformation: #1







DMS reactivity > 1.0 0.0 0.4 0.7 G/U/No data
Position: 0 (position.label in template: 0.5')5' Position: 1 (position.label in template: 1.U) Reactivity: nanU Position: 2 (position.label in template: 2.C) Reactivity: nanC Position: 3 (position.label in template: 3.G) Reactivity: nanG Position: 4 (position.label in template: 4.G) Reactivity: nanG Position: 5 (position.label in template: 5.U) Reactivity: nanU Position: 6 (position.label in template: 6.C) Reactivity: nanC Position: 7 (position.label in template: 7.A) Reactivity: nanA Position: 8 (position.label in template: 8.G) Reactivity: nanG Position: 9 (position.label in template: 9.G) Reactivity: nanG Position: 10 (position.label in template: 10.U) Reactivity: nanU Position: 11 (position.label in template: 11.A) Reactivity: nanA Position: 12 (position.label in template: 12.A) Reactivity: nanA Position: 13 (position.label in template: 13.A) Reactivity: nanA Position: 14 (position.label in template: 14.A) Reactivity: nanA Position: 15 (position.label in template: 15.G) Reactivity: nanG Position: 16 (position.label in template: 16.A) Reactivity: nanA Position: 17 (position.label in template: 17.U) Reactivity: nanU Position: 18 (position.label in template: 18.G) Reactivity: nanG Position: 19 (position.label in template: 19.A) Reactivity: nanA Position: 20 (position.label in template: 20.A) Reactivity: nanA Position: 21 (position.label in template: 21.A) Reactivity: nanA Position: 22 (position.label in template: 22.A) Reactivity: nanA Position: 23 (position.label in template: 23.C) Reactivity: nanC Position: 24 (position.label in template: 24.A) Reactivity: nanA Position: 25 (position.label in template: 25.U) Reactivity: nanU Position: 26 (position.label in template: 26.U) Reactivity: nanU Position: 27 (position.label in template: 27.A) Reactivity: nanA Position: 28 (position.label in template: 28.C) Reactivity: nanC Position: 29 (position.label in template: 29.C) Reactivity: nanC Position: 30 (position.label in template: 30.G) Reactivity: nanG Position: 31 (position.label in template: 31.U) Reactivity: nanU Position: 32 (position.label in template: 32.U) Reactivity: nanU Position: 33 (position.label in template: 33.G) Reactivity: nanG Position: 34 (position.label in template: 34.U) Reactivity: nanU Position: 35 (position.label in template: 35.U) Reactivity: nanU Position: 36 (position.label in template: 36.U) Reactivity: nanU Position: 37 (position.label in template: 37.G) Reactivity: nanG Position: 38 (position.label in template: 38.G) Reactivity: nanG Position: 39 (position.label in template: 39.G) Reactivity: nanG Position: 40 (position.label in template: 40.U) Reactivity: nanU Position: 41 (position.label in template: 41.G) Reactivity: nanG Position: 42 (position.label in template: 42.C) Reactivity: 0C Position: 43 (position.label in template: 43.C) Reactivity: 0C Position: 44 (position.label in template: 44.U) Reactivity: nanU Position: 45 (position.label in template: 45.G) Reactivity: nanG Position: 46 (position.label in template: 46.G) Reactivity: nanG Position: 47 (position.label in template: 47.U) Reactivity: nanU Position: 48 (position.label in template: 48.G) Reactivity: nanG Position: 49 (position.label in template: 49.C) Reactivity: 0.5C Position: 50 (position.label in template: 50.C) Reactivity: 0C Position: 51 (position.label in template: 51.U) Reactivity: nanU Position: 52 (position.label in template: 52.A) Reactivity: 0.5A Position: 53 (position.label in template: 53.U) Reactivity: nanU Position: 54 (position.label in template: 54.G) Reactivity: nanG Position: 55 (position.label in template: 55.A) Reactivity: 1A Position: 56 (position.label in template: 56.G) Reactivity: nanG Position: 57 (position.label in template: 57.C) Reactivity: 0C Position: 58 (position.label in template: 58.U) Reactivity: nanU Position: 59 (position.label in template: 59.G) Reactivity: nanG Position: 60 (position.label in template: 60.C) Reactivity: 0C Position: 61 (position.label in template: 61.C) Reactivity: 0C Position: 62 (position.label in template: 62.G) Reactivity: nanG Position: 63 (position.label in template: 63.C) Reactivity: 0C Position: 64 (position.label in template: 64.U) Reactivity: nanU Position: 65 (position.label in template: 65.G) Reactivity: nanG Position: 66 (position.label in template: 66.G) Reactivity: nanG Position: 67 (position.label in template: 67.C) Reactivity: 0C Position: 68 (position.label in template: 68.G) Reactivity: nanG Position: 69 (position.label in template: 69.G) Reactivity: nanG Position: 70 (position.label in template: 70.C) Reactivity: 0C Position: 71 (position.label in template: 71.G) Reactivity: nanG Position: 72 (position.label in template: 72.G) Reactivity: nanG Position: 73 (position.label in template: 73.G) Reactivity: nanG Position: 74 (position.label in template: 74.U) Reactivity: nanU Position: 75 (position.label in template: 75.G) Reactivity: nanG Position: 76 (position.label in template: 76.C) Reactivity: 0C Position: 77 (position.label in template: 77.A) Reactivity: 0A Position: 78 (position.label in template: 78.C) Reactivity: 0C Position: 79 (position.label in template: 79.U) Reactivity: nanU Position: 80 (position.label in template: 80.G) Reactivity: nanG Position: 81 (position.label in template: 81.G) Reactivity: nanG Position: 82 (position.label in template: 82.C) Reactivity: 0C Position: 83 (position.label in template: 83.U) Reactivity: nanU Position: 84 (position.label in template: 84.A) Reactivity: 0A Position: 85 (position.label in template: 85.A) Reactivity: 0.5A Position: 86 (position.label in template: 86.A) Reactivity: 1A Position: 87 (position.label in template: 87.A) Reactivity: 0.5A Position: 88 (position.label in template: 88.C) Reactivity: 0C Position: 89 (position.label in template: 89.C) Reactivity: 0C Position: 90 (position.label in template: 90.G) Reactivity: nanG Position: 91 (position.label in template: 91.G) Reactivity: nanG Position: 92 (position.label in template: 92.U) Reactivity: nanU Position: 93 (position.label in template: 93.A) Reactivity: 0A Position: 94 (position.label in template: 94.A) Reactivity: 0A Position: 95 (position.label in template: 95.A) Reactivity: 0A Position: 96 (position.label in template: 96.U) Reactivity: nanU Position: 97 (position.label in template: 97.A) Reactivity: 1A Position: 98 (position.label in template: 98.C) Reactivity: 0.5C Position: 99 (position.label in template: 99.G) Reactivity: nanG Position: 100 (position.label in template: 100.A) Reactivity: 0A Position: 101 (position.label in template: 101.C) Reactivity: 1C Position: 102 (position.label in template: 102.G) Reactivity: nanG Position: 103 (position.label in template: 103.C) Reactivity: 0C Position: 104 (position.label in template: 104.G) Reactivity: nanG Position: 105 (position.label in template: 105.G) Reactivity: nanG Position: 106 (position.label in template: 106.U) Reactivity: nanU Position: 107 (position.label in template: 107.G) Reactivity: nanG Position: 108 (position.label in template: 108.A) Reactivity: 1A Position: 109 (position.label in template: 109.U) Reactivity: nanU Position: 110 (position.label in template: 110.U) Reactivity: nanU Position: 111 (position.label in template: 111.G) Reactivity: nanG Position: 112 (position.label in template: 112.C) Reactivity: 0C Position: 113 (position.label in template: 113.G) Reactivity: nanG Position: 114 (position.label in template: 114.C) Reactivity: 0C Position: 115 (position.label in template: 115.U) Reactivity: nanU Position: 116 (position.label in template: 116.G) Reactivity: nanG Position: 117 (position.label in template: 117.G) Reactivity: nanG Position: 118 (position.label in template: 118.G) Reactivity: nanG Position: 119 (position.label in template: 119.U) Reactivity: nanU Position: 120 (position.label in template: 120.A) Reactivity: 1A Position: 121 (position.label in template: 121.C) Reactivity: 0.5C Position: 122 (position.label in template: 122.G) Reactivity: nanG Position: 123 (position.label in template: 123.G) Reactivity: nanG Position: 124 (position.label in template: 124.U) Reactivity: nanU Position: 125 (position.label in template: 125.U) Reactivity: nanU Position: 126 (position.label in template: 126.A) Reactivity: nanA Position: 127 (position.label in template: 127.U) Reactivity: nanU Position: 128 (position.label in template: 128.U) Reactivity: nanU Position: 129 (position.label in template: 129.C) Reactivity: nanC Position: 130 (position.label in template: 130.G) Reactivity: nanG Position: 131 (position.label in template: 131.U) Reactivity: nanU Position: 132 (position.label in template: 132.G) Reactivity: nanG Position: 133 (position.label in template: 133.G) Reactivity: nanG Position: 134 (position.label in template: 134.U) Reactivity: nanU Position: 135 (position.label in template: 135.G) Reactivity: nanG Position: 136 (position.label in template: 136.G) Reactivity: nanG Position: 137 (position.label in template: 137.C) Reactivity: nanC Position: 138 (position.label in template: 138.A) Reactivity: nanA Position: 139 (position.label in template: 139.C) Reactivity: nanC Position: 140 (position.label in template: 140.U) Reactivity: nanU Position: 141 (position.label in template: 141.G) Reactivity: nanG Position: 142 (position.label in template: 142.C) Reactivity: nanC Position: 143 (position.label in template: 143.C) Reactivity: nanC Position: 144 (position.label in template: 144.C) Reactivity: nanC Position: 145 (position.label in template: 145.A) Reactivity: nanA Position: 146 (position.label in template: 146.C) Reactivity: nanC Position: 147 (position.label in template: 147.U) Reactivity: nanU Position: 148 (position.label in template: 148.U) Reactivity: nanU Position: 149 (position.label in template: 149.U) Reactivity: nanU Position: 150 (position.label in template: 150.G) Reactivity: nanG Position: 151 (position.label in template: 151.A) Reactivity: nanA Position: 152 (position.label in template: 152.A) Reactivity: nanA Position: 153 (position.label in template: 153.U) Reactivity: nanU Position: 154 (position.label in template: 154.A) Reactivity: nanA Position: 155 (position.label in template: 155.U) Reactivity: nanU Position: 156 (position.label in template: 156.3')3' 10 20 30 50 100 150


nrdR-ribD-ribE-nusB-thiL-pgpA



Position: 1810-1924, Conformation: #1







Retained alignments:


   NC_002932.3       -.--GG....C....G.......G...A...UC...G..--.G..C..UG...A...C....G.A.............................................GA.U...C.ACC...G....U...U...A......UUC-..................................................................GUUGC.CcCGGCGCUUUCGA.G..C.U.G.CCGU.C...............................................................GG.U.U.A.C.....G..A..G.A.AA..-......--...G...GCU...AU.Gu......ugUCUGG....CA....A.........A.........U.AC.....GAUG.CG.A.UU....GU.GA.........CGCUUGGGGU.UAUCAUCCGCGGCUCGACCCC...........GCAC..UUC..G-ACG
   NC_002939.5       U.CCGC....C....A.......C...G...GUggcG..AU.G..A..UG...G...C....G.A.............................................CA.U...C.GAC...G....U...C...G......UCAG..................................................................GGUCC.C.UGGGGCCUUUGA.A..A.U.U.CCGC.U...............................................................UA.C.-.-.-.....-..G..G.C.CC..Aga..aaCU...G...GUC...CA.G.........AAGGG....AA....A.........C.........U.AC.....GAUG.CC.G.UA....AU.CU.........GCCUCGGUGC.CGUGAUUCGCGGCUCCACGCC...........UCAC..UUC..GAUUA
   NC_003155.5       -.----....A....C.......U...G...GG...A..AU.C..G..AC...G...-....-.A.............................................GC.C...G.ACC...C....U...C...C......UCAG..................................................................GGUCC.C.CGGGAGCUUCGA.G..C.U.G.CCGG.U...............................................................CG.U.C.G.Cc...aA..G..G.U.CC..U.....cGC...G...GGC...--.-.........---CG....GG....G.........U.........U.AC.....GACG.CG.A.UC....GU.CG.........CCCUCGGCGU.CGUCAUCCGCGGCGGCACCCC...........CCAC..UUC..GACUU
   NC_003910.7       A.UGGU....A....A.......U...G...UU...A..AU.G..A..CG...A...A....G.A.............................................UA.U...U.ACU...A....U...C...G......UUCG..................................................................AGUAC.C.UGGUGCAUAUGA.G..U.U.A.CCUC.U...............................................................AG.C.A.G.C.....U..A..A.A.AA..A......AU...U...GCU...AA.A.........AAAGG....CG....A.........G.........G.CG.....GAUG.CA.A.UU....AU.UG.........CCAUCGGUGC.UGUUAUUCGUGGUGGCACUCC...........GCAC..UUU..GAUUU
   NC_004193.1       U.UCGU....C....Ac....ggC...G...UA...G..CU.A..G..GG...A...A....A.A.............................................UA.U...U.GAU...G....U...G...A......UUUG..................................................................GGUUC.C.AGGUGCUUUUGA.G..A.U.U.CCUUaU...............................................................AU.C.A.C.C.....A..A..G.C.GC..G......C-...A...GUC...CA.U.........UCUCA....AA....A.........A.........U.AC.....GACG.GA.G.UA....AU.AA.........CGUUAGGAAC.AGUGAUUCGCGGAGCAACGAC...........ACAU..UAU..GAUUA
   NC_004347.2       U.UGGC....C....A.......A...G...UC...A..GU.G..A..UG...A...A....A.A.............................................CA.U...C.ACU...G....U...U...G......UCCG..................................................................UGUAC.C.UGGUGCGGUUGA.G..U.U.A.CCGC.U...............................................................GG.C.U.G.C.....A..C..G.U.CG..U......GU...U...GCC...GC.A.........AGUGG....UA....A.........G.........U.UU.....GACG.GU.A.UU....AU.UG.........CACUUGGUGC.GGUAAUCCGUGGUGGUACCCC...........UCAC..UUU..GAUUU
   NC_004369.1       C.GGGG....C....Ag.....aG...G...UC...A..GU.-..-..-G...A...A....U.A.............................................C-.-...-.CGU...G....U...G...G......UCG-..................................................................GUGCC.C.UG--------GA.A..C.U.G.CCCG.U...............................................................GG.U.G.G.U.....-..-..-.-.--..C......CA...G...GAA...CU.C.........GCCCG....CA....C.........C.........C.AC.....GAUG.CG.G.UG....GU.GG.........CCCUGGGAUG.CGUCAUCCGCGGUGGCACCCC...........CCAC..UUC..GACUA
   NC_004578.1       C.GGCG....U....-.......-...-...-G...A..GC.G..A..AA...G...C....G.A.............................................UA.U...C.ACC...A....U...C...A......UCCG..................................................................UGCGC.C.GGGUGCGUUCGA.G..A.U.U.CCAC.U...............................................................GG.U.C.G.U.....G..C..A.G.AA..A......GU...U...GCU...CA.A.........CGCAG....CG....A.........G.........U.UC.....GCGG.CC.A.UC....GU.UG.........CACUGGGUGC.AGUGAUCCGUGGCGGUACUCC...........GCAC..UUC..GAAUA
   NC_004603.1       A.CGGA....C....A.......A...G...UA...A..GC.G..A..AG...A...C....A.A.............................................CA.U...C.ACU...G....U...U...G......UACG.................................................................uUGUCC.A.G-GUGCCGUAGA.A..C.U.A.CCUC.U...............................................................AG.U.A.G.C....uC..A..A.C.G-..U......GU...U...GCU...AA.A.........ACUGG....UA....A.........A.........U.AC.....GAUG.CG.A.UC....GU.AU.........CUCUAGGUAC.AGUAAUCCGUGGCGGUACACC...........ACAC..UUU..GAUUA
   NC_004757.1       C.CAGA....C....U.......GgguG...UA...C..AG.G..A..AG...C...G....G.A.............................................CA.U...C.GUU...C....U...G...A......CAAC..................................................................CGUAC.C.CGGCGCACUGGA.A..A.U.U.CCGG.U...............................................................UG.C.C.U.U.....G..C..A.G.AA..G......CU...G...GCU...GA.A.........UCGGA....UC....G.........G.........U.UU.....GAUG.CC.C.UG....AU.CG.........CCCUGGGUGC.GGUAAUCCGUGGCGAAACCUA...........UCAU..UUC..GAAGU
   NC_005070.1       -.----....-....-.......-...-...--...-..-A.C..A..GC...A...G....A.-..................gaccag...............cucucaGC.U...G.GAU...G....U...U...G......CUUG..................................................................GGUUC.C.CGGUUCUUUUGA.G..U.U.A.CCCA.U...............................................................CG.U.U.G.C.....U..C..A.G.AA..C......CU...U...GCA...CA.A.........AGUGG....UC....G.........U.........U.AU.....CAGG.UG.G.UG....AU.UA.........CGCUUGGCGC.UGUGAUUCGUGGAGAUACGCC...........UCAC..UUU..GAUGU
   NC_005125.1       U.CGGU....C....C.......C...G...AU...U..CG.C..A..CC...A...-....-.-.............................................GG.U...C.GAU...U....A...U...G......CCUG..................................................................GGUGC.C.GGGCUCCUUCGA.G..A.U.C.CCGA.U...............................................................GG.U.G.G.C.....C..C..G.C.CA..A......CU...U...GCC...CU.C.........UCCGG....CC....G.........C.........U.AC.....GACG.CG.A.UC....GU.CU.........GCCUGGGGGC.AGUCAUCCGCGGCCAGACCAG...........CCAC..UAC..GACCA
   NC_005126.1       U.CGGU....C....A.......G...G...UU...G..CU.U..C..AG...A...G....A.A.............................................UA.U...C.ACU...G....U...U...G......UCUG..................................................................GGUUC.C.UGGUGCUUACGA.G..U.U.G.CCAU.U...............................................................AA.C.A.G.U.....G..A..A.G.AC..A......UU...G...GUC...GA.A.........ACCCA....AA....A.........A.........U.AU.....GACG.CU.G.UU....GU.CG.........CGCUAGGUAC.AGUUAUCCGUGGUGGUACCGC...........UCAU..UUU..GAAUA
   NC_006300.1       U.UGGC....C....A.......G...G...UA...A..AA.G..A..UG...A...G....A.A.............................................UA.U...U.ACA...C....U...G...G......UACG..................................................................CGUAC.C.GGGCGCUUACGA.A..U.U.A.CCAU.U...............................................................GG.C.G.G.U.....U..C..G.C.CG..U......UU...A...GCG...GA.C.........AGCAA....AA....A.........A.........U.AU.....GACG.CC.A.UC....GU.AG.........CGUUAGGUAC.GGUUAUUCGCGGUGGUACAGC...........GCAU..UUU..GAAUA
   NC_006361.1       -.----....-....-.......-...-...--...-..-C.G..U..CG...A...G....C.A.............................................CG.U...G.ACG...G....U...G...G......UGCG..................................................................C-UGCgC.GGGCGCGAUGGA.A..C.U.G.CCGG.U...............................................................GG.U.G.G.C.....C..C..A.G.GA..A......CU...G...GCC...C-.-.........----G....CA....C.........G.........C.AC.....GACG.CG.G.UG....GU.CG.........CGCUCGGCGU.GGUGAUCCGCGGCGGCACCCC...........GCAC..UUC..GAGUA
   NC_006510.1       C.GCGC....C....Au....ggC...G...UG...A..GC.G..A..CA...G...C....G.A.............................................CA.U...C.ACU...G....U...C...G......CCUG..................................................................GGUGC.C.GGGUGCGUUUGA.A..A.U.C.CCGC.U...............................................................UG.U.G.G.C.....G..A..A.A.AA..A......AU...G...GCG...GA.A.........UCGAA....GC....A.........G.........U.UU.....GACG.CU.G.UC....AU.UA.........CGCUUGGCGC.CGUCAUCCGUGGGGCAACGAG...........CCAU..UUU..GACUA
   NC_006512.1       A.UGGC....G....A.......A...G...UA...G..CG.G..A..CG...A...C....G.A.............................................UA.U...A.ACC...G....U...U...G......UGCG..................................................................UGUUC.C.CGGUGCUUAUGA.A..A.U.G.CCGG.U...............................................................AA.C.G.G.C.....G..A..A.A.CG..U......CU...G...GCC...AG.C.........UCUGG....UA....A.........G.........U.AU.....GACG.CA.A.UU....AU.UG.........CGGUCGGUGC.GGUUAUUCGCGGUGGAACACC...........ACAC..UUC..GAGUU
   NC_006526.2       C.UGGU....C....A.......C...G...AA...U..GU.G..A..AG...U...-....-.-.............................................CA.U...U.AC-...-....-...-...-......---G..................................................................-GUGC.C.AGGCGCGCUCGA.A..A.U.U.CC--.-...............................................................GG.C.A.G.C.....C..A..U.U.AC..U......AU...G...GCAucuGA.U.........ACCGG....CC....U.........U.........U.AU.....GAUG.CC.U.UU....GU.CG.........CUUUAGGCGU.GGUUAUUCGGGGCGAAACCUA...........UCAU..UUC..GAGAU
   NC_007204.1       -.----....-....-.......-...-...-A...U..UG.G..G..UA...G...U....A.A.............................................CA.U...C.ACU...G....U...G...A......UUCG..................................................................UGUGC.C.GGGUGCAUUUGA.G..U.U.G.CCAU.U...............................................................GG.U.U.G.C....cC..A..G.C.GC..G......CU...-...GCU...GA.A.........UCUGA....CC....G.........C.........U.UU.....GAUG.CG.A.UC....GU.UG.........CUUUGGGUGC.GAUUAUCCGUGGUAGCACGCC...........GCAU..UUU..GACUU
   NC_007292.1       U.UGGA....C....A.......C...G...UA...A..AA.G..A..UG...A...A....A.A.............................................UA.U...A.ACC...A....U...A...A......UUUG..................................................................GGUUC.C.AGGCUCCUAUGA.A..U.U.A.CCAU.U...............................................................AA.U.C.G.C.....A..A..A.A.GC..A......UU...G...GCU...AU.U.........AGUCA....UA....A.........G.........U.AU.....GAUG.GA.A.UA....AU.AG.........CUUUGGGUAC.AGUAAUUCGUGGAUUUACCAU...........ACAU..UUU..GAAUU
   NC_007481.1       C.AGGU....G....G.......U...G...UA...U..CG.G..A..UG...A...C....G.A.............................................UA.U...U.ACC...G....U...A...G......UUUA..................................................................UGUAC.C.UGGCGCGGUUGA.A..U.U.A.CCUU.U...............................................................AG.C.A.G.Cg..aaA..C..G.U.AU..U......GC...G...GCA...AA.A.........A---A....AC....A.........G.........U.AU.....GAUG.CA.A.UC....AU.CG.........CAUUAGGCGU.AGUGAUCAGAGGUGGUACUCC...........ACAC..UUU..GACCU
   NC_007614.1       -.----....-....-.......C...G...UC...G..AU.G..C..AG...G...G....A.A.............................................UG.U...C.GUC...C....U...G...G......UUUC..................................................................GGUCC.C.CGGGGCGCUUGA.A..A.U.C.CCUU.U...............................................................GG.C.G.U.U.....G..C..A.A.AA..G......AU...G...GCC...UU.G.........ACCGA....CC....A.........G.........U.UC.....GAUG.CG.C.UG....AU.CG.........CUCUGGGCGC.AGUCAUACGCGGAGAGACAUA...........CCAU..UUC..GAAAU
   NC_007712.1       U.CGGC....C....A.......G...G...UC...A..AA.G..A..CG...A...A....A.A.............................................UA.U...U.ACC...G....U...G...G......UCUG..................................................................GGUGC.C.UGGGGCUUAUGA.A..U.U.G.CCGU.U...............................................................AG.C.G.G.U.....C..A..G.C.GC..G......CU...G...GCC...GA.C.........AGCAA....AA....A.........C.........U.AC.....GACG.CC.G.UC....GU.GG.........CGCUUGGGAC.GGUUAUCCGUGGCGGCACCGC...........GCAU..UUU..GAAUU
   NC_007759.1       -.----....G....A.......G...G...GG...A..AG.G..A.uAU...U...C....A.G.............................................GU.U...U.ACC...G....-...-...-......----..................................................................GGUGC.C.CGGGGCCUUUGA.A..C.U.G.CCGC.U...............................................................GG.U.G.G.C.....U..A..A.A.AA..G......CU...U...GCU...GU.A.........AGCCA....GC....G.........C.........U.UU.....GAAG.CC.G.UC....AU.CU.........GCCUCGGGGC.GGUCAUCCGGGGUGCGACUCC...........GCAU..UUU..GAAUA
   NC_007794.1       -.----....-....-.......-...-...--...G..CC.G..G..GC...A...C....G.A.............................................GG.U...C.GAA...G....U...C...A......UCAC..................................................................CGUGC.C.GGGCGCCCUUGA.A..A.U.U.CC--.-...............................................................GG.G.C.G.C.....G..A..U.C.GC..G......CU...C...GCC...GA.Cc......agUCGGA....AG....A.........C.........U.AU.....GACG.GC.U.AU....GU.UG.........CCAUCGGCGU.CGUCAUCCGCGGCGAAACGUA...........UCAC..UUC..GAGAU
   NC_007908.1       -.----....-....-.......C...G...UG...G..CU.G..A..GA...A...A....C.A.............................................CA.U...U.GAC...C....U...G...G......UUCA..................................................................AGUUC.C.CGGCGCGCUGGA.G..G.U.G.CCGG.U...............................................................GG.C.C.U.U.....G..U..U.G.GC..G......CU...G...GCC...GA.A.........AAAUU....GG....A.........A.........U.AC.....GACG.CG.C.UG....GU.GG.........CCGUCGGCUG.CAUCAUUCGCGGCGAAACCUA...........UCAU..UUU..GAGUU
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   NZ_CP061007.1     -.----....-....-.......-...-...--...-..AU.C..G..CC...G...-....-.A.............................................GC.C...G.ACC...G....U...G...G......UGCG..................................................................GGUGC.C.CGGCUCGAUCGA.G..C.U.C.CCGG.U...............................................................GG.U.C.-.-....uG..C..C.A.GC..A.....gCU...G...GCG...--.-.........---CA....CC....A.........G.........C.AC.....GACG.CG.G.UG....GU.CG.........CGCUCGGCGC.GGUGAUCCGCGGCGGCACCCC...........GCAC..UUC..GAGUA
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   NZ_OU343031.1     U.UGGU....-....-.......-...G...UC...A..UA.G..G..UG...A...A....G.A.............................................CA.U...U.CUG...C....U...C...G......UUAC..................................................................AGUGC.C.CGGCGCACUAGA.A..A.U.U.CCGC.U...............................................................UG.C.G.C.U.....G..C..A.G.AA..G......CU...U...GCU...GA.G.........ACUGG....UC....A.........G.........U.UC.....GACG.CA.C.UA....AU.CG.........CCCUGGGCGC.AGUGAUUCGAGGUGAAACCUA...........UCAU..UUC..GAGCU
   NZ_OU594967.1     -.AGGU....C....A.......G...G...UU...A..AA.G..A..CG...A...G....A.A.............................................UA.U...C.ACU...G....U...U...G......UUAA..................................................................AGUCC.C.UGGUGCAGUGGA.A..A.U.C.CCGC.U...............................................................GG.U.G.G.C....aC..A..A.C.A-..A......CU...U...GCC...AA.A.........UCUGG....UC....A.........A.........G.UC.....GAUG.CC.A.UU....AU.UG.........CCUUAGGUAC.AGUCAUCCGGGGCGGCACUUA...........UCAU..UUU..GAACU
   NZ_OU912926.1     -.----....-....-.......U...G...UC...A..GC.G..A..UG...C...G....G.A.............................................UA.U...U.ACA...C....U...G...G......UAAG..................................................................CGUAC.C.AGGUGCAUUGGA.A..A.U.C.CCGU.U...............................................................GG.U.G.C.U.....G..C.aA.C.GC..-......AU...G...GCG...CA.A.........AGCGG....AA....G.........G.........U.UC.....GACG.CG.C.UU....AU.CG.........CACUGGGUGC.GGUAAUUCGCGGGGACACUUA...........CCAC..UUC..GAAAU
   NZ_OX366320.1     C.UGAU....A....A.......A...U...UC...A..AA.G..G..AA...A...U....A.A...................uau....................uggUU.A...C.GAG...-....-...-...-......----.........................auaa.................................uuaaAGCGC.C.UGGUACGUUUGA.G..A.U.A.----.-ccagcug......................caauucu...........................--.U.U.U.U.....G..C..G.G.UC..A......AA...G...GCA...AG.A.........A-UAC....UA....A.........U.........U.AU.....GAUG.GU.U.AU....UU.AG.........CUCUUGGAUG.UGUAAUUCGUGGUGAAACUGA...........UCAU..UAU..AAAUA
   NZ_OX366374.1     A.AAGU....C....A.......U...G...UA...A..GC.U..A..UG...A...-....-.-.............................................CA.U...A.AUU...G....A...-...-......----..................................................................AGUUC.C.UGGUGCAUUCGA.G..A.U.A.----.-ccagcua......................caauucu...........................--.U.U.U.U.....G..C..G.A.UC..A......AA...A...GUA...AA.-.........AAUGC....UA....A.........U.........U.AC.....GACG.GU.U.AU....UU.AG.........CUCUUGGGUG.CGUGAUUCGCGGUGAAACUGA...........UCAU..UAU..AAAUA


   Structure         (.((((....................................(..(..((............................................................)).)...).(((.............................................................................................)))((.(...((((((.....(..(.(.(.((...................................................................)).).).).).....)..)..).).))..............)...)).................)))))............................................((.(.((..................))))).........((((((.(((((.................))))..).)..)))))


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nrdR-ribD-ribE-nusB-thiL-pgpA



Position: 1810-1924, Conformation: #1







97% 90% 75% 50% Nucleotide present N N N Nucleotide identify E < 0.1 Base-pair covariation E < 0.05 Helix-level covariation 97% 90% 75%

R R R R R R Y R U R U R Y G U C C G G Y G C Y U G A R U C C U G Y Y R R U G C R R R U Y G A Y G C R U R U Y R C Y U G G Y R Y G U A U Y C G G G Y G R A C Y C A Y U U Y G A Y 5'