nrdA-nrdB-yfaE



Position: 2427-2567, Conformation: #1







DMS reactivity > 1.0 0.0 0.4 0.7 G/U/No data
Position: 0 (position.label in template: 0.5')5' Position: 1 (position.label in template: 1.G) Reactivity: nanG Position: 2 (position.label in template: 2.G) Reactivity: nanG Position: 3 (position.label in template: 3.A) Reactivity: nanA Position: 4 (position.label in template: 4.U) Reactivity: nanU Position: 5 (position.label in template: 5.G) Reactivity: nanG Position: 6 (position.label in template: 6.C) Reactivity: nanC Position: 7 (position.label in template: 7.G) Reactivity: nanG Position: 8 (position.label in template: 8.G) Reactivity: nanG Position: 9 (position.label in template: 9.C) Reactivity: nanC Position: 10 (position.label in template: 10.G) Reactivity: nanG Position: 11 (position.label in template: 11.U) Reactivity: nanU Position: 12 (position.label in template: 12.A) Reactivity: nanA Position: 13 (position.label in template: 13.A) Reactivity: nanA Position: 14 (position.label in template: 14.A) Reactivity: nanA Position: 15 (position.label in template: 15.C) Reactivity: nanC Position: 16 (position.label in template: 16.G) Reactivity: nanG Position: 17 (position.label in template: 17.C) Reactivity: nanC Position: 18 (position.label in template: 18.C) Reactivity: nanC Position: 19 (position.label in template: 19.U) Reactivity: nanU Position: 20 (position.label in template: 20.U) Reactivity: nanU Position: 21 (position.label in template: 21.A) Reactivity: nanA Position: 22 (position.label in template: 22.U) Reactivity: nanU Position: 23 (position.label in template: 23.C) Reactivity: nanC Position: 24 (position.label in template: 24.C) Reactivity: nanC Position: 25 (position.label in template: 25.G) Reactivity: nanG Position: 26 (position.label in template: 26.G) Reactivity: nanG Position: 27 (position.label in template: 27.C) Reactivity: nanC Position: 28 (position.label in template: 28.C) Reactivity: nanC Position: 29 (position.label in template: 29.U) Reactivity: nanU Position: 30 (position.label in template: 30.A) Reactivity: nanA Position: 31 (position.label in template: 31.C) Reactivity: nanC Position: 32 (position.label in template: 32.G) Reactivity: nanG Position: 33 (position.label in template: 33.G) Reactivity: nanG Position: 34 (position.label in template: 34.C) Reactivity: nanC Position: 35 (position.label in template: 35.U) Reactivity: nanU Position: 36 (position.label in template: 36.C) Reactivity: 0.5C Position: 37 (position.label in template: 37.G) Reactivity: nanG Position: 38 (position.label in template: 38.G) Reactivity: nanG Position: 39 (position.label in template: 39.U) Reactivity: nanU Position: 40 (position.label in template: 40.U) Reactivity: nanU Position: 41 (position.label in template: 41.U) Reactivity: nanU Position: 42 (position.label in template: 42.G) Reactivity: nanG Position: 43 (position.label in template: 43.U) Reactivity: nanU Position: 44 (position.label in template: 44.A) Reactivity: 1A Position: 45 (position.label in template: 45.G) Reactivity: nanG Position: 46 (position.label in template: 46.G) Reactivity: nanG Position: 47 (position.label in template: 47.C) Reactivity: 0C Position: 48 (position.label in template: 48.C) Reactivity: 0C Position: 49 (position.label in template: 49.U) Reactivity: nanU Position: 50 (position.label in template: 50.G) Reactivity: nanG Position: 51 (position.label in template: 51.A) Reactivity: 0A Position: 52 (position.label in template: 52.U) Reactivity: nanU Position: 53 (position.label in template: 53.A) Reactivity: 0.5A Position: 54 (position.label in template: 54.A) Reactivity: 1A Position: 55 (position.label in template: 55.G) Reactivity: nanG Position: 56 (position.label in template: 56.A) Reactivity: 0A Position: 57 (position.label in template: 57.C) Reactivity: 0C Position: 58 (position.label in template: 58.G) Reactivity: nanG Position: 59 (position.label in template: 59.C) Reactivity: 0C Position: 60 (position.label in template: 60.G) Reactivity: nanG Position: 61 (position.label in template: 61.C) Reactivity: 1C Position: 62 (position.label in template: 62.C) Reactivity: 1C Position: 63 (position.label in template: 63.A) Reactivity: 1A Position: 64 (position.label in template: 64.G) Reactivity: nanG Position: 65 (position.label in template: 65.C) Reactivity: 0C Position: 66 (position.label in template: 66.G) Reactivity: nanG Position: 67 (position.label in template: 67.U) Reactivity: nanU Position: 68 (position.label in template: 68.C) Reactivity: 0C Position: 69 (position.label in template: 69.G) Reactivity: nanG Position: 70 (position.label in template: 70.C) Reactivity: 1C Position: 71 (position.label in template: 71.A) Reactivity: 0A Position: 72 (position.label in template: 72.U) Reactivity: nanU Position: 73 (position.label in template: 73.C) Reactivity: 0C Position: 74 (position.label in template: 74.A) Reactivity: 0A Position: 75 (position.label in template: 75.G) Reactivity: nanG Position: 76 (position.label in template: 76.G) Reactivity: nanG Position: 77 (position.label in template: 77.C) Reactivity: 0C Position: 78 (position.label in template: 78.U) Reactivity: nanU Position: 79 (position.label in template: 79.C) Reactivity: 0.5C Position: 80 (position.label in template: 80.C) Reactivity: 0C Position: 81 (position.label in template: 81.G) Reactivity: nanG Position: 82 (position.label in template: 82.G) Reactivity: nanG Position: 83 (position.label in template: 83.G) Reactivity: nanG Position: 84 (position.label in template: 84.U) Reactivity: nanU Position: 85 (position.label in template: 85.G) Reactivity: nanG Position: 86 (position.label in template: 86.C) Reactivity: 0C Position: 87 (position.label in template: 87.C) Reactivity: 0C Position: 88 (position.label in template: 88.G) Reactivity: nanG Position: 89 (position.label in template: 89.G) Reactivity: nanG Position: 90 (position.label in template: 90.A) Reactivity: 0A Position: 91 (position.label in template: 91.U) Reactivity: nanU Position: 92 (position.label in template: 92.G) Reactivity: nanG Position: 93 (position.label in template: 93.C) Reactivity: 1C Position: 94 (position.label in template: 94.A) Reactivity: 0A Position: 95 (position.label in template: 95.G) Reactivity: nanG Position: 96 (position.label in template: 96.C) Reactivity: 0C Position: 97 (position.label in template: 97.G) Reactivity: nanG Position: 98 (position.label in template: 98.U) Reactivity: nanU Position: 99 (position.label in template: 99.G) Reactivity: nanG Position: 100 (position.label in template: 100.A) Reactivity: 1A Position: 101 (position.label in template: 101.A) Reactivity: 1A Position: 102 (position.label in template: 102.C) Reactivity: 0C Position: 103 (position.label in template: 103.G) Reactivity: nanG Position: 104 (position.label in template: 104.C) Reactivity: 0C Position: 105 (position.label in template: 105.C) Reactivity: 0C Position: 106 (position.label in template: 106.U) Reactivity: nanU Position: 107 (position.label in template: 107.U) Reactivity: nanU Position: 108 (position.label in template: 108.A) Reactivity: 0A Position: 109 (position.label in template: 109.U) Reactivity: nanU Position: 110 (position.label in template: 110.C) Reactivity: 0C Position: 111 (position.label in template: 111.C) Reactivity: 0C Position: 112 (position.label in template: 112.G) Reactivity: nanG Position: 113 (position.label in template: 113.G) Reactivity: nanG Position: 114 (position.label in template: 114.C) Reactivity: 0C Position: 115 (position.label in template: 115.C) Reactivity: 0C Position: 116 (position.label in template: 116.U) Reactivity: nanU Position: 117 (position.label in template: 117.A) Reactivity: 0.5A Position: 118 (position.label in template: 118.C) Reactivity: 0C Position: 119 (position.label in template: 119.G) Reactivity: nanG Position: 120 (position.label in template: 120.G) Reactivity: nanG Position: 121 (position.label in template: 121.C) Reactivity: 1C Position: 122 (position.label in template: 122.U) Reactivity: nanU Position: 123 (position.label in template: 123.C) Reactivity: 1C Position: 124 (position.label in template: 124.G) Reactivity: nanG Position: 125 (position.label in template: 125.G) Reactivity: nanG Position: 126 (position.label in template: 126.A) Reactivity: 0.5A Position: 127 (position.label in template: 127.U) Reactivity: nanU Position: 128 (position.label in template: 128.U) Reactivity: nanU Position: 129 (position.label in template: 129.U) Reactivity: nanU Position: 130 (position.label in template: 130.G) Reactivity: nanG Position: 131 (position.label in template: 131.U) Reactivity: nanU Position: 132 (position.label in template: 132.A) Reactivity: 0A Position: 133 (position.label in template: 133.G) Reactivity: nanG Position: 134 (position.label in template: 134.G) Reactivity: nanG Position: 135 (position.label in template: 135.C) Reactivity: 0C Position: 136 (position.label in template: 136.C) Reactivity: 0C Position: 137 (position.label in template: 137.U) Reactivity: nanU Position: 138 (position.label in template: 138.G) Reactivity: nanG Position: 139 (position.label in template: 139.A) Reactivity: 0A Position: 140 (position.label in template: 140.U) Reactivity: nanU Position: 141 (position.label in template: 141.A) Reactivity: 0A Position: 142 (position.label in template: 142.A) Reactivity: 1A Position: 143 (position.label in template: 143.G) Reactivity: nanG Position: 144 (position.label in template: 144.A) Reactivity: 0.5A Position: 145 (position.label in template: 145.C) Reactivity: 0.5C Position: 146 (position.label in template: 146.G) Reactivity: nanG Position: 147 (position.label in template: 147.C) Reactivity: 0.5C Position: 148 (position.label in template: 148.G) Reactivity: nanG Position: 149 (position.label in template: 149.C) Reactivity: nanC Position: 150 (position.label in template: 150.C) Reactivity: nanC Position: 151 (position.label in template: 151.A) Reactivity: nanA Position: 152 (position.label in template: 152.G) Reactivity: nanG Position: 153 (position.label in template: 153.C) Reactivity: nanC Position: 154 (position.label in template: 154.G) Reactivity: nanG Position: 155 (position.label in template: 155.U) Reactivity: nanU Position: 156 (position.label in template: 156.C) Reactivity: nanC Position: 157 (position.label in template: 157.G) Reactivity: nanG Position: 158 (position.label in template: 158.C) Reactivity: nanC Position: 159 (position.label in template: 159.A) Reactivity: nanA Position: 160 (position.label in template: 160.U) Reactivity: nanU Position: 161 (position.label in template: 161.C) Reactivity: nanC Position: 162 (position.label in template: 162.A) Reactivity: nanA Position: 163 (position.label in template: 163.G) Reactivity: nanG Position: 164 (position.label in template: 164.G) Reactivity: nanG Position: 165 (position.label in template: 165.C) Reactivity: nanC Position: 166 (position.label in template: 166.A) Reactivity: nanA Position: 167 (position.label in template: 167.C) Reactivity: nanC Position: 168 (position.label in template: 168.A) Reactivity: nanA Position: 169 (position.label in template: 169.G) Reactivity: nanG Position: 170 (position.label in template: 170.G) Reactivity: nanG Position: 171 (position.label in template: 171.A) Reactivity: nanA Position: 172 (position.label in template: 172.U) Reactivity: nanU Position: 173 (position.label in template: 173.G) Reactivity: nanG Position: 174 (position.label in template: 174.C) Reactivity: nanC Position: 175 (position.label in template: 175.G) Reactivity: nanG Position: 176 (position.label in template: 176.G) Reactivity: nanG Position: 177 (position.label in template: 177.C) Reactivity: nanC Position: 178 (position.label in template: 178.G) Reactivity: nanG Position: 179 (position.label in template: 179.U) Reactivity: nanU Position: 180 (position.label in template: 180.A) Reactivity: nanA Position: 181 (position.label in template: 181.A) Reactivity: nanA Position: 182 (position.label in template: 182.3')3' 10 20 30 50 100 150


nrdA-nrdB-yfaE



Position: 2427-2567, Conformation: #1







Retained alignments:


   NC_009792.1       GGAUGaCGGCG...UAAACGCCUUAUCCGGCCUAC.....GGUUG.UGc............a-g..uU.....GUAGGCCUGAUAAgcg....cag--....................................................................................--c..gcC...................AU.CAGGCGu......aGG..UGCU..........GCCGGAUGaCGGCGUAAA...CGU..CUUAUCCGGCCUACGGUUGu.gU.................CG....................................................C.UGUCGGCCUGAUAA-.....-...-----.--GCGCAGCGCCAUCA........................GGCGUUGCGU
   NC_015968.1       GGGU-.-GGCG...CUA-CGC-UUACCCGGCCUAC.....GGUUG.A-..............-....-.....-------------..........--....................................................................................--.....-gug............acgu--.------........-U..GUU-.........gGCCGGGUA.CGGCGAAGC...CGC..C--ACCCGGC---------...-.................--guuuuacaucacucuucgcc............guuaaaacccgcacgauuga-.-----GCAGGAACUG.....C...GACAG.CAGAGCGACCGGACGA........................CCGGUUGCGC
   NC_019780.1       GGGUU.ACGCU...U--UCGCUUCACCCAACCUAC.....GGUUA.CCg...........aaA...aU.....GUAGGUUGGGUGG..........AGuuuacgaaacccaaccccgauc........................................gcuguuggguuaugugcuuggcUU.....C...................AC.CCAACCu.....acGG..UUA-g.......cuGUUGGGUU.AUGUGCUU-...GGC..UUCACCCAACCUACGGUUAgcc-................aAA....................................................A.UGUAGGUUGGGUGGA.....G...UUUACgAAACCCAACCCCGAUC........................GCUGUUGGGU
   NC_021870.1       GGAUGgCGGCG...UAAACGUCUUAUCCGGCCUAC.....GGUAG.UU..............G...uU.....GUAGGCCGGGUAAgc.....gaa--....................................................................................--g...cG...................ACgCCGACA........-A..AACC..........GCCGGAUGgUGCCGUUAA...AGCgaCUUAUCCGGUCUA------...-.................--uaacguuuccaucuggccugguggcuuauucgugguuaauguauuucagacu-.--UAGGGCGGAAAUC.....CccuUGUGA.UAGCCGUUCUCCAGGG........................----------
   NZ_AP013103.1     GGAUG.GAGCG...---ACGCGAAAUCCGGGGU--.....-GGUC.UU..............A....-.....-------------..........--....................................................................................--.....-cgacg.........cggca--.------........GA..GAUU..........CCCGGAUU.--GCGCCG-...CGC..UUCAUCCGGGCUACGGGAU..c-gcg..........uacgCG....................................................C.CGUGGCCUA------.....-...--CUU.CAACGCCGCGAUCAGC........................UUCGCCGCGC
   NZ_AP019007.1     GGGU-.-GGCG...CUGGCGCU-UACCCGGCCUAC.....GGCCC.GAg...........uc-g..cU.....GUU-GCCGGGUGGcgc....uca--u..................................................................................g--c...uU...................AC.CCGGCCuac..gguUC..GAGUcgc...uguuGCCGGGUG.--GCGCUCA...UGC..UU-ACCCGGCCUACGGUUCgag-................cCG....................................................U.UGUAGGCCCGGUAAG.....G...CGUCGcCGCCACCGGGCAACA-agacuaccu......gaaacuaacUGCCU-----
   NZ_AP022508.1     GGGU-.-GGCG...GCUACGCCUUACCCGACCUAC.....GUUGA.G-..............-....-.....-------------..........--....................................................................................--.....-cu...............uu--.------........-U..GUAG..........GCCGGGUA.-AGCGUAAG...CGC..C--ACCCGGCUUUAUGCUA..c-.................--....................................................C.--AAAGCCACGUUUU.....A...CCUGG.CGUUACCACCGCAGGC........................A---------
   NZ_AP022547.1     GGGUUgCGGCG...UAAACGCCUUACCCGGGCUAC.....CGGAC.CAaca........gca-c..cC.....GUAGCCCUGCUAAgcg....cag--....................................................................................--c..gcG...................AG.CAGGGG.......aUG..UUUU..........CCCGGGUUgCGGCGUUAA...CGC..CUUCCCCGGGCUACCGGAC..c-agu...........accGC....................................................C.AGUAGCCCUGCUAAG.....C...GCAGC.GCGAGCAGGGGAUGUUu.....................uaUACCUGGCUC
   NZ_AP023184.1     GGG--.-GGCG...CUU-CGCUU-GCCCGACCUAC.....GAAAG.AA..............G....-.....-------------..........--....................................................................................--.....-guuu...........ugug--.------........GU..UUUU..........GUCGGGG-.--GCGCUAA...CGC..UU-GCCCGACCUACAAGGGc.a-u..............gaUU....................................................U.UGUAGGUCGGUUAAG.....C...GAAGC.----GUCACCCGAC--aacaaa............uuacgc----------
   NZ_CP008781.1     AGAGU.UAGCGc.uUUAGCGCUUACUCUGGUCCCA.....UGCUU.UG..............C....G.....GUCGACCAGAGUUa........g--cgcuu.........................................................................uagcgcUU.....A...................CU.CCGGUC........CC..AUGCuuugcggucgACCAGAGC.UGGCGCUUUa.gCGC..UUACCCCGGUCCCAUGCUU..u-g..............cgGU....................................................C.----GACCAGAGCUG.....G...CGCUU.UAGCGCUUACCCCGGUcccaugcuuu...gcggucgaccaGAGUUAGCGC
   NZ_CP009795.1     GGAGU.UAGUGc.uUCAGCGCUUACUCCGGUCCCA.....UGCAA.CG..............C....G.....GUCGACCGGAGUUa........g--cgcuu.........................................................................cagcgcUU.....A...................CU.UCGGUC........CC..AUGCaacgcggucgACCGGAGU.UAGCGCUUCa.gCGC..UUACUUCGGUCCCAUGCAA..c-g..............cgGU....................................................C.----GACCGGAGUUA.....G...CGCUU.CAGCGCUUACUUCGGUcccaugcaac...gcggucgaccgGAGUUAGUGC
   NZ_CP011602.1     GGAUG.CGGCG...AAAACGUCUUAUCCGGGCUAC.....GGUUC.--..............-....U.....GUAGCCCUGGCAAgc......gc--....................................................................................--a...gC...................GC.CGGGGA........--..CAUU..........CCCGGAUG.CGGCGUAAC...CGC..CUUAUCCGGGCUACGAUU-...-.................--....................................................U.UGUAGCCCCGGCAAG.....C...G----.UAGCGCCGCCGGGGACaguuauca........ggcaagcuUCGCCUGCGC
   NZ_CP012257.1     GGGUG.CG---...---CAGGCUUACCCGCCCUACaggaaGGUUG.AU..............U...uC.....GUAGGGUGGGUAAgc.....gaa--....................................................................................--g..cgC...................AC.CCACCUg.....acGU..UAAC..........GGCGGGUG.CGCA-----...-GG..CUUACCCGUCCUACAGGAA...Aggu...........ugaUU....................................................U.UGUAGGG-GGGUAAG.....C...GGCGC.ACCCACCUGACGUUAA........................UGGCGGUUGC
   NZ_CP012871.1     GGAU-.-GGCG...CUGACGCU-UAUCCGGCCUAC.....GGUGA.AC..............U....-.....-------------..........--....................................................................................--.....-cug.............cuu--.------........UU..GUAG..........GCCGGAUG.--GCGCUGA...CGC..UU-AUCCGGCCUACGGUGA...Acuc...........ugcUU....................................................U.UGUAGGCCGGAUAAG.....G...UGCUU.GCACCGCCAUCCGG--........................----------
   NZ_CP013366.1     AGAGU.UAGCGc.uUCAGCGCUUACUCUGGUCCCA.....UGCUU.UG..............C....G.....GUCGACCAGAGUUa........g--cgcuu.........................................................................cagcgcUU.....A...................CU.CUGGUC........CC..AUGCuuugcggucgACCAGAGU.UAGCGCUUUa.gCGC..UUACUCUGGUCCCAUGCUUc.g-c...............gGU....................................................C.----GACCAGAGUUA.....G...CGC--.----------------........................----------
   NZ_CP013459.1     GGAGU.UGGCGc.uUUAGCGCUUACUCCGGCCCCA.....UGCAA.GG..............U....U.....GUCAGCCGGAGUAgg......cg--uuuc...........................................................................agcgcC-....uG...................CU.CCGGCC........CC..GUGCaaagcggucgGCCGGAGG.CGGCGCUUCa.gCGC..UUGCUCCGGCC--------...-.................--acca...........................................ugcaa-.----AGCCGGGUGGG.....G...GG---.-ACCGUCCGCGCCGAUg......................cGGGCGGACGC
   NZ_CP013461.1     GGAGU.UGGCGc.uUUAGCGCUUACUCCGGUCC--.....-----.--..............-....-.....-------------..........--....................................................................................--.....-caugcuu....ugcggucg--.------........--..----..........ACCGGAGU.UGGCGCUUUa.gCGC..UUACUCCGGUCCCAUGCUU..u-g..............cgGU....................................................C.----GACCGAAGCCG.....G...UGCAU.CCGCACUUACUCCAGUcccgugcuug...gcgguugaccgGAGU------
   NZ_CP013940.1     GGGUG.CGC--...---ACGCUU-ACCCGCCCUAC.....GGGAC.--..............-....-.....-------------..........--....................................................................................--.....-agguu........gguugc--.------........--..GAAU..........GGCGGGU-.--GCGCAC-...--G..CUUACCCGCCCUACGGGAC...Agguu.........gguuGU....................................................A.UGUAGGGCGGGUAAG.....C...-----.--GCAGCGCACCCGCC........................GAUGUAAUGC
   NZ_CP017184.1     GGGU-.-GGCG...GCUUCGCCUUACCCGGCCUAC....aAGGUG.CG..............G....-.....-------------..........UG....................................................................................UU.....-...................--.------........CG..CGUU..........GCCGGGUG.--GCGGCUU...CGC..CUUACCCGGCCUACAGGUGcgcU.................AU....................................................U.CGUAGGCCGGGUAAG.....Cg.cAGCGC.CACCCGGCGA------........................----------
   NZ_CP022221.1     GGAUG.GAGCG...---CAGCGAAAUCCGGGAUUC.....GUGCC.--..............-....-.....-------------..........--....................................................................................--.....-agcg...........ucga--.------........--..GAUU..........CCCGGAUU.GCGCUG---...CGC..UCCAUCCGGGCUACGGAGU...U.................GU....................................................UgCGUGGCUCCGACCGA.....C...CACAUaUUCCGUCAUUGCGAGC........................GCAGCGAAGC
   NZ_CP027107.1     GGUGG.GUGCG...CUUGCGCUU-ACCCACCCUAC.....GGCAG.GU..............U...uU.....GUAGGGCAGGUAAgc.....gga--....................................................................................--g..cgC...................AC.CUGCCAa......uGC..AGGCga......auGGUGGGU-.--GCGCUUG...CGC..-UUCCCCACUCUACGGAAG...G.................UU....................................................U.UGUAGGGCAGGUAAG.....C...GG---.-AGCGCACCUGCCAAU........................GCAGGCGGUC
   NZ_CP030126.1     GGAUC.GAGCCc.gAUGGGCGAUGAUCCGAC----.....-----.--..............-....-.....---ACGGUGGUGAcg......gu--....................................................................................--uc.cgC...................AC.CGCCGU........--..----..........GUCGGAUC.GGCGCU--C...CGC..UUGAUCCGACCUACGGCAU..c-cacg.........ccggAC....................................................C.CGUAGGUCGGAUUAG.....C...GGCCC.CGCCGCGUAAUCC---gacg................ugcc------GC--
   NZ_CP033744.1     GGAUG.CGGCU...AAC--GCCUUAUCCGGCCUAC.....AAACA.CAcg..........ca-g..uC.....GUAGGCCUGAUAAgcg....cag--....................................................................................--c..gcC...................AU.CAGGCAaa....uc--..AGUGcaa....cauGCCGGAUG.CGGC--UAA...CGC..CUUAUCCGGCCUGCAAACC..g-ca............cgcAG....................................................C.CGUUGGCCUGAUAAG.....C...UGCGU.GAGCAUCGUAAUUUGGcaaau..............caggc----------
   NZ_CP033844.1     GGAGG.CGGCGcuuAACGCGCCUUGUCCGGGCUAC.....CGGAU.CGcagacggcuguaaa-c..cC.....GUAGCCCGGGGUAag.....gcg--uc................................................................................ag--c..cgC...................GA.CCGGGG........GA..UUCU..........CCCGGAGG.CGGCGCUUAacgCGC..CUUGUCCGGGCUACAGGAU...Cgcagacg...gcuguaaAC....................................................C.CGUAGCCCGGGAUAAggcguC...AGCCG.CAACCCGGGAUACG--uaaaa..............cgucgUAUUCC----
   NZ_CP035704.1     GGAUAaCGCGG..cUGUGCCGCUCAUCCGACCUAC.....GAAUC.GA..............C...aU.....AUA----UGGAUA..........--gacggacuguucggaaugcguaggucggaaa.....................agcaaagcgccuuccgacaauugccgauuuca-U.....-...................UC.CAUUGC........AC..GAAU..........GUCGGAUAaCGCGGCUUU..gCCG..CUCAUCCGACCUACGAGUU...UggccugaacaaaucgucGA....................................................U.GGUAGGUCGGAAAAG.....C...AAAGCgCCUUCCGACAA-----aa...................cgc----------
   NZ_CP036175.1     GGGAG.UGGCG..cAAAGCGCCUUGCCCGGGCUAC.....GGAAA.--..............-....C.....GCAGACGACUGAA..........GGcuuguagcccggacagaugc...........................................gcagcaucgccuccgggaagaUU.....-...................CU.GUGGUC........--..UUUC.........uCCCGGGGG.CGGCGCAAA..gCGC..CUUGCCCGGGCUACGGAAA...Cgcagacg...acugaagGC....................................................U.UGUAGCCCGGAC-AG.....A...UGCGC.-AGCAUCGCCUCCGGGaa...................aug-U--------
   NZ_CP037864.1     GGAUGgCGGCG...UAAACGCCUUAUCCGGCCUAC.....AGGCC.CU..............G....A.....GUAGGCCUGAUAAgcc....cag--....................................................................................--c..gcC...................AU.CAGGCAcug..cguG-..----gua...cuguGCCGGAUAgCGGCGUAAA...CGC..CUUAUCCGACCUACGGGUCc.u-.................--....................................................G.GGUAGGCCUGAUAAG.....C...-GCAG.CGCCAUCAGGCAC---........................UGCCUGAUGG
   NZ_CP041242.1     GGGCA.AGGCG...---AAGCCGCACCCGGGGU--.....-----.--..............-....-.....-------------..........--....................................................................................--.....-ugcg..........ugugu--.------........--..----..........CCCGGGUG.CGGCUU---...CGC..CUUGCCCGGGCUACAGGAG..u-................cAA....................................................U.CGUCGCGCGGA--AG.....C...GGUUC.AAGACGCGCCAGC---.......................aCAAGCGCAUC
   NZ_CP041247.1     GGAUGgCGGCG...UAAACGCCUUAUCCGGGCUAC.....CGGUC.UC..............A....U.....GUAGCCCCGGUAAg.......cg--uagcgccaccgg............................................................ggagccauucccG-.....G...................GC.CGCGGC........AG..GUCCc.......ucCCCGGAUGgCGGCGUAAA...CGC..CUUAUCCGGGCUACCAUUCc.c-.................--....................................................A.CGUAGCCCCGGUAAG.....Cg.uAGCGC.AAGCCAUGG--AGGGAgaccgaagaag..acuaugugcggU---------
   NZ_CP041925.1     GGAUAgCGGCG..cACAGCGCCUUAUCCGGGCUAC.....GGUUC.GGua.........uuc-....-gguugGUAGCCCCGGUAAgcg....uaa--....................................................................................--gc.gcC...................AC.CGGGGG........AG..GAUU..........CCCGGAUAgCGGCACAUA..gCGC..CUUAUCCGGGCUACGGUUC..g-gua..........uucgGU....................................................C.GGUAGCCCCGGUAAG.....CguaAGCGC.CACCGGGGAGG-----g......................gC---------
   NZ_CP042968.1     GGAUG.GAGCG...---AAGCGCAAUCCGGGAU--.....AGGUC.CA..............U....-.....-------------..........--....................................................................................--.....-ccgcug.......cgaucu--.------........GG..GUCC..........CCCGGAUU.UCGCUU---...CGC..UCCAUCCGGGCUACGUCCC..a-ug............cguCU....................................................A.CGUAAUCCGGAUCGA.....C...AUAUC.CGGUAGGCCCUCGAGCuu....................gc----------
   NZ_CP043318.1     GGGUA.AGGCG...AAGCCGC--CACCCGGC----.....-UUUU.UU..............A....-.....-------------..........C-auccagcuccaccagcacagc.........................................uuccguggcuacccauguagucU-.....-a.................a--.------........AA..CAAA..........GCCGGGUG.--GCGCUGA...CGC..U-UACCCGGCCUACGUGUU...Uga............gccAU....................................................U.UGUAGGCCGGGUAAG.....G...CGGAG.CCGCCACCCGGCUU--........................----------
   NZ_CP043342.1     GGGUAuCGGCU...---AUGCCUUACCCGGCCUCG.....GUACA.GU..............A....-.....-------------..........--....................................................................................--....cU...................--.------........GC..UGUU..........GCCGGGUG.ACGC-----...UGC.gCUUACCCGGCCUACGUUCAg.g-................gGA....................................................U.UGUAGGCCCGGUAAG.....C...GAAGC.-GCCACCGGGCAAAA-aau..................cac-GCGCGG---
   NZ_CP044098.1     GGAUG.CGGCG...UAAACGCCUUAUCCGGCCUAC.....AGGUU.UCacu........guu-u.acC.....GUAGGCCCGAUAAgu......gu--....................................................................................--cg.ugC...................AU.CGGGCA........C-..-AUC..........GCCGGAUG.CGGCGUAAA...CGC..CUUAUCCGGCCUACAGGUU...Ucgc..........uguuUA....................................................C.CGUAGGCCCAAUAAG.....C...GUCGU.GCAUCGGGCACAUCGC........................----------
   NZ_CP045235.1     GGAGU.UAGCGc.uUCAGCGCUUACUCCGGCCC--.....-----.--..............-....-.....-------------..........--....................................................................................--.....-caucccugu.gggauuucg--.------........--..----..........GCCGGAGU.CGGCACGUCa.aCGC..UUACUCCGGCC--------...-.................--ccaucccug..................................ugggaucuc-.----GGGCGGAGUUG.....G...CGCUU.UAGUGCCUGCUCCAGUcguaucccugugggauuucggccgGAGUCGGCAC
   NZ_CP045783.1     GGAUGgCGGCA...UAAAUGCCUUAUCCGGCCUAC.....GAGAU.CU..............C...gC.....GUAAGCCCCUAUA..........--cuccaggccuggcaagcaacagcg....................................ccgccgggcagucaggcaccguac--.....-...................CC.GUGGCU........G-..---U..........GCCGGAUGgCGGCAUAAA...UGC..CUUAUCCGGCCUACGGGAU..cC.................UC....................................................C.CGUAAGCCUAUACUG.....C...GCCGC.C----GAGUAA-----caaac.............gccagg-C--------
   NZ_CP045845.1     GGGGG.CGGCG...UAUACGCCUUGCCCGGGCUAC.....AGGGG.GCgcucau..gaugcu-u..gU.....GUAGCCCGGCCAAgc.....gca--....................................................................................--g..cgC...................CG.CCGGGA........GU..U--C..........CCCGGGGG.CGGCGUAUA...CGC..CUUGCCCGGGCUACAGGGG...-gcgcuc....augauguUU....................................................G.UGUAGCCCGGCCAAG.....C...----G.CAGCGCCGCCGGGAAUu.....................ccCCGGGGG---
   NZ_CP048836.1     GGAUA.-AGCG...UCAGCGC--CAUCCGGCAAUC.....AACCU.GU..............-....-.....-------------..........--....................................................................................--.....-caugu.........ggcac--.------........CG..UGGU..........GCCGGAUG.--GCGCGUU...CGC..UU-AUCCGG----------...-.................--....................................................-.------CCUGCGCCA.....C...UGC--.CCCCUCCCCUUCAAGG........................GGAGGG----
   NZ_CP050508.1     GGAUAgCGGCG...CAAGCGCCUUAUCCGGGCUAC.....GCGAU.CGcau.......acgc-u..uC.....GUAGCCCCGGUGA.........g-Cgcagugcggccgggggaagcagaagcag...........................gccauaugcugaacgcggguuuaacgguuAU.....C...................AC.CAGGGG........CU..--GU..........CCCGGAUAgCGGCGCAAG...CGC..CUUAUCCGGGCUACGCGAU...-cgca.........uacgCU....................................................U.CGUAGCCCCGCUAAG.....C...GCAGC.GCGACCGGGGAGUG--ccaucau.........ccuauacu----UCGU--
   NZ_CP054058.1     GGGU-.-GGCG...GCUAUGCCUUACCCGGCCUAC.....GGUCU.GGa............u-u..uU.....GUAGGCCCGGCAA..........ACaucgugccgccgggcaccagauggcagcguuuaug.............caggcgucgggguuuacggcgcaggaaggugguuggGU.....-...................GA.AGGGUU.......aAA..AAAU..........GCCGGGUG.--GCGGCUU...CGC..CUUACCCGGCCUACGGUCUg.gA.................UU....................................................U.UGUAGGCCCGGCAAG.....C...AUCGC.GCCGCCGGGCACCGGUu.....................acGU--------
   NZ_CP055055.1     GGAUG.CGGCG...UAAACGCCUUAUCCGGCCUAC.....GGCUC.GG..............U...uU.....GUAGGCCUGAUAAgacgcgccag--...................................................................................c--gu.cgC...................CU.CAGGCU........CC..GGGU..........GCCGGAUG.CAGCGUGAA...CGC..CUUAUCCGGCCUACGGCUC..gG.................AU....................................................U.UGUAGGCCUGAUAAG.....A...CGCGC.CAGCGUCGCAUCAGGCac....................agGAUGCGGCGU
   NZ_CP055292.1     GGAUG.CGGCG...UAAAUGCCUUAUCCGGCCUAC.....-GUUC.GGca.........acg-g..cU.....GUAGGCAUGAUAAga......cg--cgcaagcg....................................................................ucgcauca--g...gC...................AU.CGUGCA........CC..GAUU..........GCCGGAUG.CGGCGUGAA...CGC..CUUAUCCGGCCUACAGUCA..g-caa..........cggu--....................................................-.UGUUG--UUGCUUAG.....A...ACUGC.GAUUCUUCAGUGGAG-ccgguca.........gcgcggug-ACUGAAGA-
   NZ_CP060412.1     GGAU-.-UGCG..cU--GCGCUUCAUCCGGGCUAC.....GGUGA.UUgg..........cg-u.cgU.....GUGGCCCGGAUGA..........AGcgaagcgcaauccgggggaauccu...................................gcgucaucgucacggcuuaugcgucAU.....-...................AG.CAGGGC........--..-CAU..........CCCGGAUU.--GCGCU--..gCGC..UUCAUCCGGGCUACGGUCA..u-ug............gcaUC....................................................G.UGUAGCCCGGAUGGA.....G...CG---.AAGCGGAAUCCGGGGGagucuugcg......ucaucgucaCGGCUUAUGC
   NZ_CP065838.1     GGAUGgCGGCG..cGCAGCGCCUUAUCCGGGCUACccgacGGU--.--cc.........gga-a..cC.....GUAGCCCUGCUAAgc.....gua--....................................................................................--gc.gcG...................AG.CAGGGA........A-..-UAC..........CCCGGAUGgCGGCGGGUA..gCGC..CUUAUCCGGGCUACCCGA-...-cggu.........cuggAA....................................................C.CGUAGCCCUGCUAAG.....Cg.uAGCGC.GAGCAGGGAAGCC---.......................gGUAUCUAUGC
   NZ_CP070290.1     GGAUG.CGGCG...UGAGCGCCUUAUCCGGCCUAC.....GGUUC.AAa............a-cuccG.....GUAGGCACGAUAAgacgcgacug--...................................................................................c--gu.cgC...................AU.CGGGCA........UU..GUUU..........GCCAGGUG.CGGCGUAAA...CGC..CUUAUCCGGCCUACGGUUCa.a-a..............acCC....................................................U.GGUAGGCACGAUAAG.....A...CGCGC.CAGCGUCGCAUCGGGCauugu.............uugccaGAUGCGACGU
   NZ_CP077262.1     GGAUGgCGGCG...CAAGCGCCUUAUCCGGCCUAC.....AAAGC.UUu...........gc-a.cuC.....GUAGGCUUGAUAAgc.....gca--....................................................................................--g..cgC...................AU.CAGGCG........CA..UCUU.........cGCCGGAUGgCGGCGCAAG...CGC..CUUAUCCGGCCUACAAAGC..u-uu.............gcAC....................................................U.CGUAGGCCUGAUAAG.....Cg.cAGCGC.AUCAGGCACUUAUGGCu.....................ua--U-------
   NZ_CP077392.1     GGGU-.-GGCG...GCUUCGCCUUACCCGGCCUAC.....GGGUG.CG..............G....-.....-------------..........UG....................................................................................UU.....-...................--.------........CG..UUUU..........GCCGGGUG.--GCGGCUU...CGC..CUUACCCGGCCUACAGGUGcgcU.................GU....................................................U.CGUAGGCCGGGUAAG.....Cg.cAGCGC.CACCCGGCAACA----gc....................gc----------
   NZ_CP082833.1     GGAUGgCGGCG...UAAACGCCUUAUCCGGCCUGU.....GGUUAaUC..............Uc..cU.....GUAGGCCUGAUAAgcg...caga--....................................................................................--gc.gcC...................AU.CAGGCG........GAcgUGGU..........GCCGGAUGaCGGCGUAAA...CGC..CUUAUCCGGCCUGGGGUAA..u-................cGC....................................................C.UGUAGGCCUGAUAAG.....Cg.cAGCGC.CAUCAGGCA-------gacg................uaguGC--------
   NZ_CP083638.1     GGAUG.CGGCG...UGAACGCCUUAUCCGACCUAC.....GGUAC.GG..............Au..uU.....GUAGGCCUGAUAAgacgcgacag--...................................................................................c--gu.cgC...................AU.CAGGCG........AU..GGCU..........GUCGGAUG.CGGCGUGAA...CGC..CUUAUCCGACCUACGGUUC..gG.................GU....................................................U.UGUAGGCCUGAUAAG.....A...CGCGA.CAGCGUCGCAUCAGGCaaugaaug.......caaaacagcGAUGU-----
   NZ_CP084874.1     GGAUAgCGGCG..cGUAGCGCCUUAUCCGGGCUAC.....CGAAU.GUuac........gaa-a..uC.....GUAGCCCUGCUAAgcg....cag--....................................................................................--c..gcG...................AG.CAGGGA........A-..-UGC..........CCCGGAUGgCGGCGCGUU..gCGC..CUUAUCCGGGCUACCGAAUg.u-ua............cgaAA....................................................C.CGUAGCCCUGCUAAG.....Cg.cAGCGC.GAGCAGGGAAGAC---gga.................gucu-AUGC-----
   NZ_CP086106.1     GGGUA.GAGCG...---AAGCGGCACCCGACAU--.....-----.--..............-....-.....-------------..........--....................................................................................--.....-caacgcg....ccugcuuu--.------........--..----..........GUCGGGUG.CCGCUU---...CGC..UCUACCCGACCUACGGUUA...Ugac..........uucaAU....................................................C.UGUAG--CGGCUAUA.....C...CGAGA.AACAACACCGGUCGGC........................GAUG------
   NZ_CP087880.1     GGAUGgCGGCG...UAAACGCCUUAUCCGGCCUAC.....GGUUC.GG..............Ua..aU.....GUAGGCCCGGUAAgug....cag--....................................................................................--c..gcC...................AC.CGGGCAu......g--..UAGUgcg...ccuuGCCGGAUGgCGGCGUAAA...CGC..CUUAUCCGGCCUACGGUUCg.g-.................UA....................................................A.UGUAGGCCCGGUAAGu...gC...AGCGC.CACCGGGCA---UGU-a......................gUGC-------
   NZ_CP088280.1     GGAUG.GAGCG...---CAGCGAAAUCCGGGUUUC.....U----.--..............-....-.....-------------..........--....................................................................................--.....-caccucgccgauagacuuc--.------........--..----..........CCCGGAUU.GCGCUU---...CGC..UCCAUCCGGGCUACAGGUCu.aU.................AU....................................................U.CGUAGCUCCGACGAG.....Cc.cACAAA.CUCCGUCAUUGCGAGC........................GUAGCGAAGC
   NZ_CP088282.1     GGAUG.GAGCG...---AAGCGUAAUCCGGGGCAG.....G-C--.--..............-....-.....-------------..........--....................................................................................--.....-uauccgcag.cgaaagaug--.------........--..--AU..........CCCGGAUU.GCGCUU---...CGC..UUCAUCCGGGCUACG----...-.................--gcgu............................................gaga-.GCUAGAUCCAAAG--.....-...--AAA.AGGGCCCGGUUCUGGAggg.................gccaGAACCGGGCC
   NZ_CP091779.1     GGGU-.-GGCG...GCUUCGCCUUACCCGGCCUAC.....AGGA-.--..............-....-.....-------------..........--....................................................................................--.....-ucggcg.......cugaac--.------........--..-AUC..........GCCGGGUG.--ACGGCUU...CGC..CUUACCCGGCCUACGGGAU..c-.................--....................................................G.AGUAGGCCCGGUAAG.....C...G----.--UAGCGCCACCGGGC........................GAUGACGC--
   NZ_CP093332.1     GGAU-.-GGCG...CU-GCGC-AUAUCCGACCUAC.....AAGUG.CAugauuucgugaguc-g..uU.....GUAGGGUGGAUAAgcc....aua--g..................................................................................c--g...uC...................AU.CCACCGuuugcaucAG..UAUU..........GUCGGAUG.--ACGCU--..gCGC..UU-AUCCGACCUACAAGUG..c-augauuu...cgugaguCG....................................................U.UGUAGGGUGGAUAAG.....C...---GA.UUGCGUCAUCCACCGUuugcauc.........aguuuuguCGGAUGACGC
   NZ_CP093334.1     GGGUGgCGGCG...UAAACGCCUUACCCGGGCUAC.....CGUCA.CA..............C....-.....-------------..........--agcgagcugugaauccguagcccggcuaagcgcagcgccagccggggguuuuacuuacagcguaugcccgguacaggcgaugcu--.....-...................--.------........CU..CGUC..........CCCGGGUGgCGGCGUAAA...CGC..CUUACCCGGGCUACCGUCA...Cacagcga...gcugugaAU....................................................C.CGUAGCCCGGCUAAGc...gC...AGCGC.CAGCCGGGGGUUUUACuuac................agcgUAUGCCCGGU
   NZ_CP107077.1     GGAUGgCGGCG...CAAGCGCCUUAUCCGGCCUAC.....GGGUU.AGcgu........ggu-u..uU.....GUAGGCCUGAUAAg.......cg--cagcgcca....................................................................ucaggcagU-.....U...................UU.CAGGCAca...gcgCU..CAUU..........GCGGGAUGgCGGCGCAAG...CGC..CUUAUCCGGCCUACGGGUU..c-gug...........cggUU....................................................U.UGUAGGCCUGAUAAG.....C...G----.UAGCGCCAUCAGGCAUga...................ugcCCGAUGGCGC
   NZ_LR134485.1     GGAUG.CGGCA...UAACGUUUU------------.....GUGGC.AU..............-....U.....GUAGGCCGGAUAAggcg.cuugc--....................................................................................--gccgcC...................AU.CCGGCA........AU..GCCU..........--------.--GAUGCGC...UGC.gCUUAUCAGGCCUACAGUGA...A.................CG....................................................A.UGUAGGCCCGAUAAA.....C...--UCU.CAGCUUCGCGCUUUUAgcacggca.......auauccgcaGGCGUGGUGC


   Structure         (((((..((((......((((..((((((((..........((((.((............................((((((((.............................................................................................................................)).))))))........))..))))..........))))))))...))))......)))..).)))))(((((((((..............................................................................).))))))))........................((((((((((............................))))))))))


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nrdA-nrdB-yfaE



Position: 2427-2567, Conformation: #1







97% 90% 75% 50% Nucleotide present N N N Nucleotide identify E < 0.1 Base-pair covariation E < 0.05 Helix-level covariation 97% 90% 75%

G G R U R G C G R Y G C Y U A Y C C G R C U Y C C G G R U G C R Y C G C Y U Y A Y C C G G C U A C R R G U A G Y C G R Y R R Y 5'