nnr-tsaE-amiB-mutL-miaA-hfq-hflX-hflK-hflC



Position: 9443-9582, Conformation: #1







DMS reactivity > 1.0 0.0 0.4 0.7 G/U/No data
Position: 0 (position.label in template: 0.5')5' Position: 1 (position.label in template: 1.U) Reactivity: nanU Position: 2 (position.label in template: 2.A) Reactivity: nanA Position: 3 (position.label in template: 3.G) Reactivity: nanG Position: 4 (position.label in template: 4.A) Reactivity: nanA Position: 5 (position.label in template: 5.C) Reactivity: nanC Position: 6 (position.label in template: 6.C) Reactivity: nanC Position: 7 (position.label in template: 7.A) Reactivity: nanA Position: 8 (position.label in template: 8.G) Reactivity: nanG Position: 9 (position.label in template: 9.A) Reactivity: nanA Position: 10 (position.label in template: 10.U) Reactivity: nanU Position: 11 (position.label in template: 11.G) Reactivity: nanG Position: 12 (position.label in template: 12.C) Reactivity: nanC Position: 13 (position.label in template: 13.U) Reactivity: nanU Position: 14 (position.label in template: 14.G) Reactivity: nanG Position: 15 (position.label in template: 15.A) Reactivity: nanA Position: 16 (position.label in template: 16.A) Reactivity: nanA Position: 17 (position.label in template: 17.A) Reactivity: nanA Position: 18 (position.label in template: 18.G) Reactivity: nanG Position: 19 (position.label in template: 19.G) Reactivity: nanG Position: 20 (position.label in template: 20.U) Reactivity: nanU Position: 21 (position.label in template: 21.G) Reactivity: nanG Position: 22 (position.label in template: 22.G) Reactivity: nanG Position: 23 (position.label in template: 23.U) Reactivity: nanU Position: 24 (position.label in template: 24.A) Reactivity: nanA Position: 25 (position.label in template: 25.A) Reactivity: nanA Position: 26 (position.label in template: 26.C) Reactivity: nanC Position: 27 (position.label in template: 27.G) Reactivity: nanG Position: 28 (position.label in template: 28.C) Reactivity: nanC Position: 29 (position.label in template: 29.C) Reactivity: nanC Position: 30 (position.label in template: 30.C) Reactivity: nanC Position: 31 (position.label in template: 31.C) Reactivity: nanC Position: 32 (position.label in template: 32.U) Reactivity: nanU Position: 33 (position.label in template: 33.G) Reactivity: nanG Position: 34 (position.label in template: 34.C) Reactivity: nanC Position: 35 (position.label in template: 35.G) Reactivity: nanG Position: 36 (position.label in template: 36.G) Reactivity: nanG Position: 37 (position.label in template: 37.C) Reactivity: 1C Position: 38 (position.label in template: 38.G) Reactivity: nanG Position: 39 (position.label in template: 39.A) Reactivity: 0.5A Position: 40 (position.label in template: 40.A) Reactivity: 0.5A Position: 41 (position.label in template: 41.G) Reactivity: nanG Position: 42 (position.label in template: 42.A) Reactivity: 0.5A Position: 43 (position.label in template: 43.G) Reactivity: nanG Position: 44 (position.label in template: 44.C) Reactivity: 0C Position: 45 (position.label in template: 45.G) Reactivity: nanG Position: 46 (position.label in template: 46.A) Reactivity: 1A Position: 47 (position.label in template: 47.U) Reactivity: nanU Position: 48 (position.label in template: 48.A) Reactivity: 0.5A Position: 49 (position.label in template: 49.A) Reactivity: 0A Position: 50 (position.label in template: 50.C) Reactivity: 0.5C Position: 51 (position.label in template: 51.G) Reactivity: nanG Position: 52 (position.label in template: 52.G) Reactivity: nanG Position: 53 (position.label in template: 53.U) Reactivity: nanU Position: 54 (position.label in template: 54.G) Reactivity: nanG Position: 55 (position.label in template: 55.C) Reactivity: 0.5C Position: 56 (position.label in template: 56.C) Reactivity: 0C Position: 57 (position.label in template: 57.A) Reactivity: 0A Position: 58 (position.label in template: 58.G) Reactivity: nanG Position: 59 (position.label in template: 59.C) Reactivity: 0C Position: 60 (position.label in template: 60.A) Reactivity: 1A Position: 61 (position.label in template: 61.A) Reactivity: 1A Position: 62 (position.label in template: 62.U) Reactivity: nanU Position: 63 (position.label in template: 63.C) Reactivity: 0.5C Position: 64 (position.label in template: 64.U) Reactivity: nanU Position: 65 (position.label in template: 65.G) Reactivity: nanG Position: 66 (position.label in template: 66.C) Reactivity: 0C Position: 67 (position.label in template: 67.U) Reactivity: nanU Position: 68 (position.label in template: 68.G) Reactivity: nanG Position: 69 (position.label in template: 69.C) Reactivity: 0C Position: 70 (position.label in template: 70.G) Reactivity: nanG Position: 71 (position.label in template: 71.U) Reactivity: nanU Position: 72 (position.label in template: 72.C) Reactivity: 0C Position: 73 (position.label in template: 73.U) Reactivity: nanU Position: 74 (position.label in template: 74.G) Reactivity: nanG Position: 75 (position.label in template: 75.C) Reactivity: 0C Position: 76 (position.label in template: 76.C) Reactivity: 0C Position: 77 (position.label in template: 77.G) Reactivity: nanG Position: 78 (position.label in template: 78.C) Reactivity: 0.5C Position: 79 (position.label in template: 79.C) Reactivity: 0C Position: 80 (position.label in template: 80.A) Reactivity: 1A Position: 81 (position.label in template: 81.G) Reactivity: nanG Position: 82 (position.label in template: 82.C) Reactivity: 1C Position: 83 (position.label in template: 83.C) Reactivity: 0C Position: 84 (position.label in template: 84.U) Reactivity: nanU Position: 85 (position.label in template: 85.C) Reactivity: 0C Position: 86 (position.label in template: 86.U) Reactivity: nanU Position: 87 (position.label in template: 87.U) Reactivity: nanU Position: 88 (position.label in template: 88.C) Reactivity: 0.5C Position: 89 (position.label in template: 89.C) Reactivity: 0C Position: 90 (position.label in template: 90.U) Reactivity: nanU Position: 91 (position.label in template: 91.C) Reactivity: 0C Position: 92 (position.label in template: 92.C) Reactivity: 0C Position: 93 (position.label in template: 93.A) Reactivity: 0A Position: 94 (position.label in template: 94.C) Reactivity: 0C Position: 95 (position.label in template: 95.A) Reactivity: 1A Position: 96 (position.label in template: 96.A) Reactivity: 1A Position: 97 (position.label in template: 97.C) Reactivity: 1C Position: 98 (position.label in template: 98.C) Reactivity: 1C Position: 99 (position.label in template: 99.A) Reactivity: 0.5A Position: 100 (position.label in template: 100.G) Reactivity: nanG Position: 101 (position.label in template: 101.U) Reactivity: nanU Position: 102 (position.label in template: 102.G) Reactivity: nanG Position: 103 (position.label in template: 103.G) Reactivity: nanG Position: 104 (position.label in template: 104.A) Reactivity: 0A Position: 105 (position.label in template: 105.G) Reactivity: nanG Position: 106 (position.label in template: 106.C) Reactivity: 1C Position: 107 (position.label in template: 107.A) Reactivity: 0A Position: 108 (position.label in template: 108.A) Reactivity: 0.5A Position: 109 (position.label in template: 109.G) Reactivity: nanG Position: 110 (position.label in template: 110.C) Reactivity: 1C Position: 111 (position.label in template: 111.A) Reactivity: 0.5A Position: 112 (position.label in template: 112.A) Reactivity: 0A Position: 113 (position.label in template: 113.C) Reactivity: 0C Position: 114 (position.label in template: 114.A) Reactivity: 0.5A Position: 115 (position.label in template: 115.C) Reactivity: 1C Position: 116 (position.label in template: 116.G) Reactivity: nanG Position: 117 (position.label in template: 117.U) Reactivity: nanU Position: 118 (position.label in template: 118.C) Reactivity: 0.5C Position: 119 (position.label in template: 119.G) Reactivity: nanG Position: 120 (position.label in template: 120.U) Reactivity: nanU Position: 121 (position.label in template: 121.C) Reactivity: 0C Position: 122 (position.label in template: 122.C) Reactivity: 0C Position: 123 (position.label in template: 123.A) Reactivity: 1A Position: 124 (position.label in template: 124.C) Reactivity: 0.5C Position: 125 (position.label in template: 125.C) Reactivity: 0.5C Position: 126 (position.label in template: 126.A) Reactivity: 1A Position: 127 (position.label in template: 127.G) Reactivity: nanG Position: 128 (position.label in template: 128.U) Reactivity: nanU Position: 129 (position.label in template: 129.C) Reactivity: 1C Position: 130 (position.label in template: 130.A) Reactivity: 0.5A Position: 131 (position.label in template: 131.G) Reactivity: nanG Position: 132 (position.label in template: 132.G) Reactivity: nanG Position: 133 (position.label in template: 133.G) Reactivity: nanG Position: 134 (position.label in template: 134.C) Reactivity: 0C Position: 135 (position.label in template: 135.G) Reactivity: nanG Position: 136 (position.label in template: 136.A) Reactivity: 0A Position: 137 (position.label in template: 137.U) Reactivity: nanU Position: 138 (position.label in template: 138.A) Reactivity: 0A Position: 139 (position.label in template: 139.U) Reactivity: nanU Position: 140 (position.label in template: 140.U) Reactivity: nanU Position: 141 (position.label in template: 141.A) Reactivity: 1A Position: 142 (position.label in template: 142.U) Reactivity: nanU Position: 143 (position.label in template: 143.G) Reactivity: nanG Position: 144 (position.label in template: 144.G) Reactivity: nanG Position: 145 (position.label in template: 145.A) Reactivity: 0.5A Position: 146 (position.label in template: 146.C) Reactivity: 0.5C Position: 147 (position.label in template: 147.C) Reactivity: nanC Position: 148 (position.label in template: 148.A) Reactivity: nanA Position: 149 (position.label in template: 149.A) Reactivity: nanA Position: 150 (position.label in template: 150.C) Reactivity: nanC Position: 151 (position.label in template: 151.G) Reactivity: nanG Position: 152 (position.label in template: 152.C) Reactivity: nanC Position: 153 (position.label in template: 153.C) Reactivity: nanC Position: 154 (position.label in template: 154.G) Reactivity: nanG Position: 155 (position.label in template: 155.C) Reactivity: nanC Position: 156 (position.label in template: 156.G) Reactivity: nanG Position: 157 (position.label in template: 157.C) Reactivity: nanC Position: 158 (position.label in template: 158.C) Reactivity: nanC Position: 159 (position.label in template: 159.A) Reactivity: nanA Position: 160 (position.label in template: 160.A) Reactivity: nanA Position: 161 (position.label in template: 161.C) Reactivity: nanC Position: 162 (position.label in template: 162.G) Reactivity: nanG Position: 163 (position.label in template: 163.C) Reactivity: nanC Position: 164 (position.label in template: 164.G) Reactivity: nanG Position: 165 (position.label in template: 165.C) Reactivity: nanC Position: 166 (position.label in template: 166.A) Reactivity: nanA Position: 167 (position.label in template: 167.G) Reactivity: nanG Position: 168 (position.label in template: 168.C) Reactivity: nanC Position: 169 (position.label in template: 169.G) Reactivity: nanG Position: 170 (position.label in template: 170.U) Reactivity: nanU Position: 171 (position.label in template: 171.A) Reactivity: nanA Position: 172 (position.label in template: 172.A) Reactivity: nanA Position: 173 (position.label in template: 173.C) Reactivity: nanC Position: 174 (position.label in template: 174.G) Reactivity: nanG Position: 175 (position.label in template: 175.A) Reactivity: nanA Position: 176 (position.label in template: 176.C) Reactivity: nanC Position: 177 (position.label in template: 177.U) Reactivity: nanU Position: 178 (position.label in template: 178.A) Reactivity: nanA Position: 179 (position.label in template: 179.C) Reactivity: nanC Position: 180 (position.label in template: 180.C) Reactivity: nanC Position: 181 (position.label in template: 181.3')3' 10 20 30 50 100 150


nnr-tsaE-amiB-mutL-miaA-hfq-hflX-hflK-hflC



Position: 9443-9582, Conformation: #1







Retained alignments:


   NC_007712.1       UCAGAUGCUA..CGCAAC.G.--...---cgccggccggcaa......................................ugccaagccccgcu---...CGGG...CAG.C......GA...UGCC......CU...U.A...A......UCUGC...UGCGGCUGC...CU...........................................................GCCG.GCG....GUAC.......CG.-CGAC...GGCGCCU.G....CC.GC.gG..--....................GCGGC...AACGCC...AGC...-----.--.-------ggaacg...........................-------...GUCAUGGAUCAGCGACGCGCCAAUGCACAGCGU
   NC_009792.1       UCAGAUGCUG..AAAGG-.C.GC..uAAC.................................................................GCG...CCUG...CGG.C......AA...AAGA......CA...G.C...A......CGGG-...--UAACAAU...CU...........................................................GCUG.CGU....CUGC.......CG.CCGGC...UUCAUCG.U....CCaGC..A.cGA....................GCGGA...GCAAGC...AAU...ACCUC.GU.CCACCAG......u........................caGGGCGAU...AUUAUGGACCAACGCCGCGCUAACGCGCAGCGU
   NC_010694.1       CCAGCUGAUG..CG---C.G.GG...CAG.................................................................GCU...GGUG...CAU.CcaccggAA...AUGC......CC...A.G...G......ACGGC...AGCAGCAGU...CU...........................................................GCUG.CGC....CUGC.......CU.CCUGC...GUCUGGC.A....--.GC.aA.cGA....................GC-GU...GCGAAC...AGC...CGUUC.AU.CGUUCAG......u........................ccGGGUGAC...AUUAUGGAUCAGCGCCGGGUGAAUGCUCAGCGU
   NC_012912.1       UCAACUGAUG..CGUGGU.C.AG...---ggcggcguaucaacuaacgcgccgacaggcgguaaugcgaugaauccugcgccguuacguuugcc--G...UCAA...CUU.C......AU...CAGG......CA...A.U...A......GCGGU...GUCGGCUAC...GC...........................................................GCCG.CGU...uCUUC.......CG.UUAAC...AACGG--.-....--.--..-..--uaa.................-----...------...---...-----.--.-------.....u...........................-------...AUUAUGGAUCAGCGCCGUGCCAACGCGCAGCGU
   NC_013592.1       UCAAUUGAUG..CGAGGU.C.--...---aggggaguuucccggcaaccgcaccugcca....acggcaaugcagcgaaucccgcgccguugcg---...CCUG..cCGU.C......GA...CAUC......CGgcgG.U...A......ACGGU...GCCAGCUAU...GC...........................................................GCCC.CGU...uCUUC.......CA.ACAAC...GGUAA--.-....--.--..-..--....................-----...------...---...-----.--.-------.....u...........................-------...AUUAUGGAUCAACGCCGCGCCAACGCGCAGCGU
   NC_013961.1       CCAGCUGAUG..CG---U.G.GU...CAG.................................................................GCU...GGCG...CAU.C......AA...CCGG......CA...A.Ug.c-ac.aggAUGGA...AGCAGCCGU...CU...........................................................GCUG.CGU....CUGC.......CU.CCUGC...UUCUGAC.A....--.GC.aA..--...cg............aac---GC...GCCAAC...AGC...AGUUC.GU.CGUUCAG......u........................ccGGACGAC...AUUAUGGAUCAGCGCCGGGUGAAUGCUCAGCGU
   NC_014306.1       UCAGAUUAUG..CGCGGA.C.--...---agggcg....................................................gagcauc--G...UCGA..aCGC.A......AC...CCAG......-G...A.C...A......GCAGC...AGCAACAGC...CU...........................................................GUUG.CGC....CUGC.......CA.CCGGC...CAGC--G.G....CA.GC.aA..UG....................ACCGC...GCCAGU...AAC...GGUUC.GA.CGUAUAA......u........................ccGGACACC...AUCAUGGAUCAGCGCCGGGCGAAUGCUCAGCGC
   NC_014500.1       UCAGCUCAUG..CGUGGU.C.A-...---ggggggcguuucgaccagcgcgccgacgagu..ggggcuuccaaucaggcgccguugcgucugcc--G...UCAA...CCU.C......AU...CAAA......CA...G.U...A......GUGGU...GUCGGCUAU...GC...........................................................GCCG.CGU...uCUUC.......CG.GCAAC...AACGG--.-....--.--..-..--....................-----...------...---...-----.--.-------ca..ac...........................-------...AUUAUGGAUCAACGCCGCGCCAACGCGCAGCGC
   NC_015567.1       GCAAAUGCUG..CG---U.G.GC...CCG.................................................................GCC...GGCA...CGG.C......AG...GUGA......AGgcaA.U...A......AAGAC...AC---CAGC...CU...........................................................GA--.--U....UCGU.......CU.CAACC...CCGCUCC.G...uCC.GC.cA.gCA....................GUGGC...GCCAGCucgAAC...AGCCA.G-.-------......cguag................caacagCGGCUCG...GUCAUGGACCAACGCCGGGCGAAUGCGCAGCGU
   NC_015968.1       UCAGAUGCUG..AAAGGC.G.GU...UCU.................................................................GCG...CCUG...CGG.C......GA...AGUCgucagaCA...A.C...A......GCGGU...GCUAACAAC...CU...........................................................GCUG.CGU....CUGC.......CG.CCAGC...GUCAUC-.-....-A.GG.uA.gCU....................CCAGU...GCGACU...ACA...ACGCC.UU.CUUCGAA......c........................gaUGGUGAC...AUCAUGGACCAACGCCGUGCUAACGCGCAGCGU
   NC_017554.1       UCAACUGAUG..CGUGGC.G.GC...GAG.................................................................UCU...UCAU...CCG.C......GA...AGAG......UG...G.A...C......AAAAA...AGCAGCUCA...AC...........................................................AUUG.CCC...uCGCU.......UU.CCGAU...CG----C.A....GU.GC.cA.g--....................----C...CGCAAU...GAC...ACGUC.GU.CAUACAG......u........................ccAGACAGC...AUCAUGGAUCAGCGUCGAGCCAAUGCUCUGCGC
   NC_017910.1       UCAGUUGCUG..AAAAAC.G.GCa.gUCA.................................................................GCC...--UG...CGG.C......GA...AGAG......CG...A.C...A......GUGCU...GCUGCUGAU...AU...........................................................GCUG.CGC....CUGC.......CA.CCGGC...GGCGUCC.A....GC.CA.gA.gUA....................GCGCG...UCAACG...UCC...UCUUC.CU.CA-----......ucagu................gaguagUGGCGAC...AUUAUGGAUCAGCGCCGGGCGAACGCUCUGCGU
   NC_021870.1       UCAGAUGCUG..AAAGGC.G.GG...AAU.................................................................GCG...CCGG...CGG.C......AA...AGAG......CG...A.C...A......AUAGC...GCCAGCAAC...CU...........................................................GCUG.CGC....CUGC.......CG.CCGUC...CACCACG.U....CU.AA.cA.cCA....................GUGGA...GCAAGC...AAC...ACGUC.GU.CCUCAAG......c........................caGGGCGAU...AUUAUGGACCAACGUCGCGCUAAUGCGCAGCGU
   NZ_AP019007.1     CCAGAUGCUG..AAAGGC.G.GU...UCU.................................................................GCG...CCUG...CUG.C......GAaguCGGG......AA...A.C...A......GUGGG...GCGAAUAAC...CU...........................................................GCUG.CGC....CUGC.......CG.CCAGC...CUCAUC-.G....--.GG.cA.gCG....................CCAGC...GCGAAC...ACA...ACGCC.UU.CUUCGAA......c........................gaUGGUGAC...AUUAUGGACCAACGCCGUGCUAACGCGCAGCGU
   NZ_AP019630.1     UCAGAUGCUG..AAAGGC.G.GU...UCU.................................................................GCG...CCAG...CAG.C......GA...AAGG......CG...A.C...Ac...caGCGGA...GCGAAUAAC...CU...........................................................GCUG.CGU....CUGC.......CG.CCAGC...CUCA---.A....CA.GG.cA.gCG....................CCAGC...ACGAAC...ACA...ACGCC.UU.CUUCGAA......c........................gaUGGUGAC...AUUAUGGACCAACGCCGUGCUAACGCGCAGCGU
   NZ_AP022508.1     UCAGAUGCUG..AAAGGC.G.GU...UCU.................................................................GCA...CCGG...CAG.C......GA...AAGA......CA...C.C...A......GCGGA...GCGAACAAC...CU...........................................................GCUG.CGU....CUGC.......CG.CCAGC...C-UC--A.U....CA.GG.cA.gCU....................CCAGC...GCGAAC...ACA...ACGCC.UU.CUUCGAA......c........................gaUGGUGAC...AUUAUGGACCAACGCCGUGCUAACGCGCAGCGU
   NZ_AP022547.1     UCAGAUGCUG..AAAGGC.G.CC...GGC.................................................................GCG...CCGG...CGG.C......AA...AGAG......CG...A.U...Ag...caGUGGC...GCAAGCGAU...CU...........................................................GCUG.CGU....CUGC.......CG.CCUGC...AGCCAGC.U....--.-C.aA.aCA....................---GC...GCCAGU...AAC...GCUUC.UA.CCUCUAC.................................GGGAGGCaccAUUAUGGACCAACGCCGCGCCAACGCGCAGCGU
   NZ_AP023184.1     UCAGAUGCUC..AAAGGU.GgCU...CAC.................................................................AG-...CCAG...CGG.C......AA...AGAC......UG...A.U...Aa...caCAGGG...GCGAACAAC...UU...........................................................GUUG.CGU....CUGC.......CA.CCUGC...GUCAAGU.U....CA.AG.cA.gCG....................GUAGC...GCCAGC...ACA...CAGUC.CU.CGUCAAG......c........................cgGGGCGAU...AUCAUGGAUCAGCGCCGCGUGAACGCGCAGCGC
   NZ_CP006569.1     UCAGAUGUUG..CGCAAC.-.--...---c..............................................................cg---...UCGG...CGC.C......GA...CCGG......CA...A.U...A......GCAAG...---------...--acgcgcucaagcaaugaggcgcucaauuu..............................----.---....--G-.......--.-----...UUGCGGC.U....GC.CC..G.cCG....................GGGGC...GCUAAC...AGC...GGUGC.CA.CGAC---......ggcaccugccgcgggcggcaacgcuagCGGGACG...GUCAUGGAUCAGCGACGCGCCAAUGCACAGCGU
   NZ_CP007044.2     UCAAAUGCUG..CGAGG-.-.-C...CAGgccg........................................................guaaa---...GCUG...UGA.C......CG...AAGG......CA...A.U...A......AAGAU...---ACCAGC...CU...........................................................GAUU.CGU....CUCG.......AU.CCCGC...UCCAUCC.U....CC.AG..-..--...uagu.........uccuCGGAG...GCGAGU...UCC...AAUGG.CU.CA-----......ag......................cgcGGGUUCU...GUGAUAGACCAACGCCGGGCAAAUACGCAGCGU
   NZ_CP007230.1     UCAAAUGCUG..CGUGGUcA.AG...GUG.................................................................CUU...CUAAc.aAAG.C......UG...AUGG......CA...A.C...A......AAGAU...AC---CAGU...CU...........................................................GAUU.CGU....UUGA.......AU.CCGGC...ACCCAGC.A...gCC.AA.cA..AA....................CUGGU...GCGAGC...AAU...UCAAAuAC.CAG----......cuca..................ggcagUGGUUCU...AUCAUGGAUCAGCGCCGGGUGAAUGCUCAGCGU
   NZ_CP009125.1     UCAGAUGCUA..CGCGGG.-.-C...AAG.................................................................---...GCGG...UGA.A......AA...UACG......CAa.aG.C...A......ACAGC...AGCGCUAAC...CC...........................................................ACUG.CGU....UUGC.......CUaGUAAC...AGCACCG.-....--.--..-..--....................GUGCA...GCGAAU...AGC...AC---.-C.CAAAC--......gcgcagc............aguaacaaUGGAAAU...AUCAUGGAUCAGCGCAAAGCAAAUGCGCAGCGU
   NZ_CP009712.1     UCAAAUGCUG..CGUGGU.C.AA...---gg............................................................ugc-UG...CUAAu.aAAG.U......UG...AUGG......CA...A.C...A......AAGAU...AC---CAGU...CU...........................................................GAUU.CGU....UUGA.......AU.CCGGC...ACCCAGC.A...gCC.AA.cA..AA....................CUGGU...GCGAGU...AAU...UCAAAuAC.CAG----......cuca..................ggcagUGGUUCU...AUCAUGGAUCAGCGCCGGGUGAAUGCUCAGCGU
   NZ_CP009781.1     UCAACUGCUG..CGCGGC.-.-C...AA-g..............................................................guGCA...GA--u.aAAG.C......GG...AUGG......CA...A.C...A......AAGAC...ACAAGU---...CU...........................................................GAUU.CGU....UUGA.......AU.CCGCC...UUCCUCU.G....CU.AA.uA.g--...cagccaaggggcuggugCCAGC...AACACA...AGC...ACCAG.UU.CAACCAG.................................UGGUUCU...AUCAUGGAUCAGCGCCGGGCAAAUGCUCAGCGU
   NZ_CP009787.1     UCAACUGAUG..CGCGGU.-.-C...AAG.................................................................G-U...GCAG...CAG.A......UA...AAGC......GG...A.UggcA......GCAAA...GAUACCAGU...CU...........................................................GA--.-UU....CGUU.......UG.AAUCC...GUCUUCC.U....CU.GC.cA.aUA....................GCAG-...-CCAAG...AAU...CUGGU.GC.CAGUAAU......ucaaauacca.......guucaaccagUGGCUCU...AUCAUGGAUCAGCGCCGAGCGAAUACUCAGCGU
   NZ_CP011254.1     UCAGAUGCUG..CGCGGU.G.CC...---gg............................................................uaa--G...UCGG..cUAG.C......GA...AGGC......-A...G.C...Aa...agAUGCC...GGACAGAAC...CU...........................................................-UCU.CGC...cCCUG.......CG.CCAGC...CUCGACU.U....CU.UC..A.uCG....................GAGG-...-CGAGC...ACC...AGCAG.UU.CCAGCAG.................................CGGUUCC...AUCAUGGACCAACGCCGGGCUAAUGCGCAGCGU
   NZ_CP011602.1     UCAGAUGCUG..AAAGGC.G.GG...AAU.................................................................GCA...CCUG...CGG.C......AA...AGAG......CG...A.U...Ag...caGUGGC...GCGAACAAC...CU...........................................................UCUG.CGC....CUGC.......CG.CCUGC...AUCCUCU.U....CC.GG.uA.aCA....................GCGGU...GCGAGC...AAU...UCAUC.GU.CCAUCAG......u........................caGGGCGAC...AUCAUGGACCAACGCCGCGCUAACGCGCAGCGU
   NZ_CP012257.1     UCAGAUGCUG..AAAGGC.G.GC...UCC.................................................................GCG...CCUG...CCG.C......GA...GCGA......CG...A.C...Aa...caACAGC...GGCAACCCG...CU...........................................................GCUG.CGU....CUGC.......CG.CCGGU..cUCAGGCA.G....CG.GC..A.aCA....................GCGGC...GCGAGC...AAC...AGCGC.GU.CUUCUGG......c........................cgUGGCGAU...AUUAUGGAUCAACGCCGUGCCAACGCGCAGCGU
   NZ_CP012264.1     UCAAAUGCUG..AAAGGC.G.GC...UCU.................................................................GCA...CCUG...CCU.C......GA...GCGGu...gaCA...A.C...A......AUAGC...GGCAACCCG...CU...........................................................GCUG.CGC....CUGC.......CG.CCAGC...UUCCGGCaG....CG.GC..A.aUA....................GCGGC...GCGAGC...AAC...GGCGG.GU.CCUCUGG......c........................cgUAGCGAU...AUUAUGGAUCAGCGCCGUGCCAACGCGCAGCGU
   NZ_CP012266.1     CCAGAUGCUG..AAAGGC.G.GU...UCC.................................................................GCG...CCUG...CGG.C......CA...GCGA......CG...A.C...A......GCAAC...AGCGGCAAUccgCU...........................................................GCUG.CGU....CUGC.......CG.CCGGU...UUCCGGCaG....CG.GC..A.aCA....................GCGGC...GCGAGC...AAC...AGCGC.GU.CUUCUGG......c........................cgUGGCGAU...AUUAUGGAUCAACGCCGUGCCAACGCGCAGCGU
   NZ_CP012268.1     CCAGAUGCUG..AAAGGC.G.GU...UCC.................................................................GCG...CCUG...CCG.C......CA...GCGA......CG...A.C...A......GCAAC...AGCGGCAAUccaCU...........................................................GCUG.CGU....CUGC.......CG.CCGGU...UUCCGGCaG....CG.GC..A.aCA....................GCGGC...GCGAGC...AAC...AGCGU.GU.CCUCUGG......c........................cgUGGCGAU...AUUAUGGAUCAACGCCGUGCCAACGCGCAGCGU
   NZ_CP012871.1     CCAGAUGCUC..AAGGGC.G.GC...AGC.................................................................GCG...CCUG...CGG.C......GA...AGAG......CA...G.C...Ac...caGCGGG...GCGAAUAAC...CU...........................................................GCUG.CGC....CUGC.......CG.CCUUC...GUCAACGaG....CA.GC..A.gCG....................CCAGC...GCCACG...ACC...ACGUC.UU.CUUCAAG......c........................gaUGGUGAC...AUCAUGGACCAACGCCGCGCGAACGCGCAGCGU
   NZ_CP013940.1     UCAGAUGCUG..AAAGGC.G.GC...UCC.................................................................GCG...CCUG...CCG.C......GA...GCGA......CG...A.C...Aa...uaACAGC...GGCAACCCG...CU...........................................................GCUG.CGU....CUGC.......CG.CCGGC...CUCCGGCaG....CG.GC..A.aCA....................GCGGC...GCGAGC...AAC...AGCGC.GU.CCUCUGG......c........................cgUGGCGAU...AUUAUGGAUCAACGCCGUGCCAACGCGCAGCGU
   NZ_CP013990.1     CCAGAUGCUG..AAAGGC.G.CA...AAC.................................................................GCC...ACUG...GCG.C......GA...AGAA......CG...A.C...Ac...caGCGGA...GCGAAUAAC...CU...........................................................GCUG.CGU....CUGC.......CA.CCUGC...GUCAAC-.-....-A.GG.cA.aCU....................CCAGC...GCAAAU...ACC...ACCUC.UU.CUUCAAA......c........................gaUGGUGAC...AUCAUGGACCAACGCCGCGCCAACGCGCAGCGU
   NZ_CP014007.2     UCAGAUGCUG..AAAGGC.G.GCgcgAGC.................................................................GCA...CCUG...CGG.C......AA...AGAG......UG...A.U...Ag...caGUGGC...GCAAACAAC...CU...........................................................GCUG.CGC....CUGC.......CG.CCUGC...GUCCAAC.U....CU.GG.cA..--....................GCAGU...GCGAAU...AGC...GCCCC.GG.CACCAUC.................................UGCCGGAgacAUCAUGGACCAACGCCGCGUAAACGCGCAGCGU
   NZ_CP014070.2     UCAGAUGCUG..AAAGG-.C.GC..gAGC.................................................................GCG...CCGG...CGG.C......AA...AGAG......CG...A.U...A......GCGGU...UCGAAC---...CU...........................................................GCUG.CGU....CUGC.......CC.UCCAC...GUCUUCU.U....CCaGC..A.gCA....................GCGGA...GCAAGC...AAC...ACCUC.GU.CCACCAG......u........................caGGGCGAU...AUUAUGGACCAACGCCGCGCUAACGCGCAGCGU
   NZ_CP014136.1     UCAAAUGCUG..CGCGGC.C.--...-AGgccg.........................................................gugc--G...CCGG...CAG.A......CG...GCGC......AA...A.C...A......AAGAC...AC---CAGC...AU...........................................................GAUU.C--....--GU.......CU.CAACC...CGUCGGC.G....CC.GU..C..CA....................-----...-GCAGC...AAC...ACCAA.CG.CGGGCAG......ccaacguagc......agcaccagcagCGGCUCG...AUCAUGGAUCAGCGCCGCGCGAAUGCGCAACGU
   NZ_CP014137.1     UCAGAUGCUG..CGCGG-.-.GC...AAG.................................................................GCG...CUGA...GAG.C......GCg.cCAGG......CA...G.C...A......GCGGC...GCCAAU---...AC...........................................................GCUG.CGU....UUGC.......CG.ACAAC...GCCAAGC.A....GC.G-..-..--....................GCGCG...GCGAGC...ACC...AGUCA.GA.CGCGAAG......cacuag...............uaauaaCGGCAAU...AUCAUGGAUCAGCGCAGAGCGAAUGCGCAGCGU
   NZ_CP015581.1     UCAGUUGCUG..AAAGGU.G.GC...GCU.................................................................GCA...GCGG...CAG.C......UA...CGUC......AG...G.U...A......AAACG...GCUAAG---...--.............................ccgguaaccccgu...ugaagccuucaucu--UA.-UU....CAUC.......UU.CUGAU...GUCAGCA.U....GC.GC.cA..GA....................GCACU...UCUGGU...UAU...UCACC.--.-------.................................GGAAAGU...GUUCUGGAUCAGCGCAGAGCCAAUGCGCUACGC
   NZ_CP015613.1     GCAAAUGCUG..CG---U.G.GC...CCU.................................................................GCC...GGCG...CGG.C......GG...GUGA......CGgcaG.U...A......AAGAC...AC---CAGC...CU...........................................................GAU-.---....UCGU.......CU.CAACC...CCGCUCC.G...uCU.GC.cA.aCA....................GUGGC...GCCAGCucgAAC...AGCCA.G-.-------......cguag................caacagCGGCUCG...GUCAUGGACCAACGCCGGGCGAAUGCGCAGCGU
   NZ_CP015750.1     UCAGAUGCUG..CGUGGA.-.--...---caaggcgguga...........................................aaguacgcaaa---...GCAA...CAG.C......AG...UGCU......AA...C.-...-......CCACU...GC-----GU...UU...........................................................----.-GC....CUAG.......UA.ACAGC...AGCGGU-.G....CG.GC.gA.aUA...gcaacc.....aaacgc-----...------...---...-----.--.-------......gcagca..............guaacaaUGGAAAU...AUCAUGGAUCAGCGCAAAGCAAAUGCGCAGCGU
   NZ_CP016337.1     UCAGAUGCUG..AAAGGC.G.GU...AAC.................................................................ACCgcuCCUG...CGG.C......AA...AGAG......UG...A.C...Aa...caGUGGC...GCGAAUAAC...UU...........................................................GCUG.CGU....CUGC.......CA.CCAGC...GUCA--A.G....CU.CC..A.gCA....................GCAGC...GCCAAC...AGC...GCCCC.CG.CAACCUC.................................UGCGGGAgauAUCAUGGACCAACGCCGCGUUAACGCGCAGCGU
   NZ_CP016948.1     UCAGAUGCUG..CGCGG-.-.CC...AA-.................................................................GGC...GCGGcacCGG.A......GA...GCGG......CA...A.C...A......AGGAU...ACCAGCCUG...A-...........................................................UUCG.CCU....CAAU.......CC.GAAUC...CUGCGCC.G...gCU.GC.cA.aCA....................GCAGC...G-----...---...----C.UC.CGCGCA-......cca....................gcggCGGUUCG...AUUAUGGAUCAGCGCCGGGCGAAUGCGCAGCGU
   NZ_CP017184.1     UCAGAUGCUG..AAAGGC.A.GU...UCU.................................................................GCA...UCGG...CAG.C......AA...AAGA......CA...A.C...A......GCGGU...GCGAACAAC...CU...........................................................GCUG.CGU....CUGC.......CA.CCUGC...GUCAUCC.G....--.-G.uA.gCA....................CAAGC...GCAACA...ACC...ACGUC.UU.CUUCGAG......c........................gaUGGUGAC...AUUAUGGACCAACGCCGUGCUAACGCGCAGCGU
   NZ_CP017279.1     UCAGAUGCUG..AAAGGC.G.GU...UCG.................................................................GCG...CCGG...CGG.C......AA...AGGC......GG...A.U...Ac...caGCGGU...GCCAACAAC...CU...........................................................GCUG.CGU....CUGC.......CA.CCUGC...GGCAUCC.G....GU.--..A.gCU....................CAAGC...GCCACA...ACC...ACGCC.UU.CUUCGAA......c........................gaUGGUGAC...AUUAUGGACCAACGCCGUGCUAACGCGCAGCGU
   NZ_CP017454.1     UCAGCUUAUG..CGUGGU.-.--...---cagggggg.................................................cguuucga---...CCAGc.gCGU.C......GA...CGAG......CG...G.U...A......AUGCU...GCCAAU---...--.............................ccgg......................cgccGUUG.CGU....CUGC.......CG.UCAAG...CUCAUCA.A....--.AC..A.gUA....................G----...------...---...-UGGU.GU.CGGUUAU......gcgccgcguuc....uuccggcaacaaCGGCAAC...AUUAUGGAUCAACGCCGCGCCAACGCGCAGCGC
   NZ_CP019706.1     UCAACUGAUG..CGGGGC.-.--...---acgggu.....................................................ucaacc---...--AA...UGC.C......GC...UGGC......AG...C.C...A......GGAG-...AGUAGCAGU...CU...........................................................GAUG.CGU....CUGC.......CG.CCGGC...GACC--G.G....CA.GC..A.aCG....................AUCGC...GCCAAC...AGC...GGUUC.GU.CCUUCUC......a........................caGGAUGAC...AUUAUGCAAAGCCGCCGUGCUAAUGCACAGCGC
   NZ_CP020388.1     CCAGAUGCUC..AAGGGG.A.AU...GCC.................................................................---...UCCG...CCG.U......AAagcAGAG......CA...G.C...A......GCGAA...AGCAGUGAC...CU...........................................................GCUG.CGC....CUGC.......CG.UCUUC...---GUCC.G....AC.GC.aA.gCA....................GCGAC...GCGCGC...AGC...CGCCA.GU.CGUCAAG......c........................gaCAGCAGU...AUUAUGGACCAGCGCCGCGCUAACGCGCAGCGC
   NZ_CP021659.1     UCAAAUGCUA..CGUGGG.C.--...---agacaaca................................................cuaaauaaa--G...CCGA...UGG.C......GA...UA-A......AA...A.C...A......CCAGU...UUGAUUGAU...CU...........................................................GAGC.CGG....CCUU.......CG.UCUGC...UAAAAGC.A....GU.CA.aA.gUA....................AGGAU...GUAAAA...AGC...GC---.--.CA-G---......u........................acGGGUAGU...CUCUCGGAUCAAGGUCGAGCUAACGUUCAACGU
   NZ_CP023009.1     ACAGAUGCUG..CGUGG-.-.--...---.................................................................---...UCAGa.aCA-.C......CA...CGGG......CG...G.C...A......ACGCG...ACCAACAC-...--.............................gguu.....................gcgccGCUG.CGU....AACU.......CC.UCGAC...CUCGUC-.-....UA.AU.aA..CG....................GUUCG...AGCAGCaccUAC...AAUUC.UU.CGCGCAG......cagc..................aucaaCGGUAAC...AUCAUGGAUCAGCGCCGGGCCAACGCCCAGCGG
   NZ_CP023525.1     UCAGAUGUUG..AAGGGU.G.GC...---gc............................................................ucaGCA..gCCGG...CCG.C......AA...AGAG......CG...A.U...A......ACAGCgcaGCGAACAAU...CU...........................................................GCUG.CGU....CUGC.......CG.CCAGC...GUCCAGC.U....CA.--..A.gCA....................GCAGU...GCCAGC...ACC...UCUUC.GU.CCUCCUC......g........................agUGGCGAU...AUCAUGGAUCAGCGUCGUGCUAACGCACUGCGC
   NZ_CP023567.1     UCAGCUGAUG..CG---C.G.GC...CAG.................................................................GCC...GGCG...CAU.C......AA...CCGG......CA...A.U...UcucaggACGGA...AGCAGCAGU...CU...........................................................GCUG.CGU....CUGC.......CU.CCUGC...CUCAGGC.A....--.GC.aA.gGA...a...............cGCGCC...AACAGC...AGU...UCGUC.GU.CC---AG......u........................ccGGACGAC...AUUAUGGAUCAGCGCCGGGUGAAUGCUCUGCGU
   NZ_CP023706.1     UCAGAUCAUG..CGUGGU.G.GC...---gau...........................................................aagGGC...GCGG...CGC.A......GA...CGAG......CG...A.C...A......GCAAG...GAUACCAGC...CU...........................................................GAUC.CGU....CUCA.......-A.CCCGC...CGCAGGC.C....AG.UA..A..CA....................AAUCG...GCCAGC...AGU...A-GCA.GC.AG-----......uagc..................acggaUAGCAGC...GUGAUGGACCAGCGUCGCGUCAACGCUCAGCGU
   NZ_CP025003.1     UCAAAUUAUG..CGUGGU.-.--...---cagggggg.................................................cguuucga---...CCAGu.gCGC.C......GA...CGAG......CG...G.C...A......ACGCC...GCCAAU---...--.............................ccgg......................cgccGUUG.CGU....CUGC.......CG.UCAAC...CUCAUCA.A....--.AC..A.gUA....................GU---...------...---...--GGU.GU.CGGCUAU......gcgccgcguuc....uuccggcaacaaCGGCAAC...AUUAUGGAUCAACGCCGCGCCAACGCGCAGCGC
   NZ_CP025799.1     UCAAUUGAUG..CGAGGU.C.--...---agggaaacuucccggcaagcgcaccugcca.....gcgguaaugcagcgaaucccgcgccguugc--G...CCUG..cCGU.C......GA...CAUC......UGgcaG.U...A......GCGGU...GCCAGCUAU...GC...........................................................GCCG.CGU...uCUUC.......CA.ACAAC...GGUAA--.-....--.--..-..--....................-----...------...---...-----.--.-------.....c...........................-------...AUUAUGGAUCAACGCCGCGCCAACGCGCAGCGU
   NZ_CP026377.1     UCAGCUAAUG..CGCGGU.-.--...---caggg.......................................................uucau---...CCAGc.uCAA.C......CC...GUAG......CG...G.C...C......AGGAG...AGCAGCAGC...CU...........................................................GAUG.CGU....CUGC.......CG.ACGAC...CUCC--G.G....CA.GC.aA..CG....................AUCGC...GCCAGC...AAC...GGCUC.GU.CGUUCAG......c........................ccGGACGAC...AUCAUGGAUCAGCGUCGUGCCAACGCACUGCGC
   NZ_CP027107.1     UCAGAUGCUG..AAAGGC.G.GC...UCC.................................................................GCG...CCUG...CCG.C......GA...GCGA......CG...A.U...A......AUAAC...AGCGGCAAUccgCU...........................................................GCUG.CGU....CUGC.......CG.CCGGC...CUCCGGCaG....CG.GC..A.aCA....................GUGGC...GCGAGC...AAC...AGCGC.GU.CCUCUGG......c........................cgUGGCGAU...AUUAUGGAUCAACGCCGUGCCAACGCGCAGCGU
   NZ_CP027260.1     UCAGAUGCUA..CGUGGG.C.--...AA-.................................................................--G...GCAG...UGA.A......AA...UACG......CA...A.A...-......GCAGC...AGCGCUAAC...CC...........................................................ACUG.CGU....UUGC.......CU.-----...AGUAACA.G....CA.GC..A..GU....................GCGGC...--GAAU...AGC...AA---.-C.CAA----......acgcgcaa..........caguaacaaUGGAAAU...AUCAUGGAUCAGCGCAAAGCAAAUGCGCAGCGU
   NZ_CP027986.1     UCAGAUGCUU..AAGGGC.G.GU...UCA.................................................................GCG...CCGG...CAG.C......GA...AGGC......UG...A.C...Ac...caGCGGU...GCCAACAAC...CU...........................................................GCUG.CGU....CUGC.......CA.CCGGC...GUCAUCC.G....GU.--..A.gCA....................CAAGC...GCAACA...ACC...ACGUC.UU.CUUCGAA......c........................gaUGGUGAC...AUUAUGGACCAACGCCGUGCUAACGCGCAGCGU
   NZ_CP028271.1     UCAGCUGAUG..CGCGGUcA.GA...GUU.................................................................CCU...CCAGu.gCGC.C......GC...GCAG......CG...C.U...C......AGGAU...AGCAGCAGC...CU...........................................................GCUG.CGC....CUGC.......CG.CCAGC...CUCA--G.G....CA.GC.aA.cGA....................GC-GC...GCCAGC...AAUagcAGUUC.GU.CGUUCAG......uc......................cgc--AGGAC...AUUAUGGAUCAGCGUCGUGCCAACGCACAGCGC
   NZ_CP031560.1     UCAGCUGAUG..CGUGGU.-.--...---cagggggg.................................................cguuucgc---...CCAGu.gCGC.C......GA...CGAG......CG...G.C...A......AUGCC...GCCAAU---...--.............................ccag......................cgccGUUG.CGU....CUGC.......CG.UCAAC...CUCAUCA.A....--.AC..A.gUA....................GU---...------...---...--GGU.GU.CGGCUAU......gcgccgcguuc....uuccggcaacaaCGGCAAC...AUUAUGGAUCAACGCCGCGCCAACGCGCAGCGC
   NZ_CP032487.1     UCAACUGAUG..CGCGGU.-.-C...AA-g..............................................................gu---...GCAG...AAA.A......AG...CGGA......UG...G.C...A......ACAAG...GAUAGCAG-...--...........................................................UCUG.AUU....CGUU.......UG.AAUCC...GCCGUCC.U....CU.GC.cA.aUA....................GCAG-...-CCAAG...AAU...CUGGU.GC.UAGUAAC......ucgaauacca.......guucaaccagUGGCUCU...AUCAUGGAUCAGCGCCGGGCGAAUGCUCAGCGU
   NZ_CP033744.1     UCAAAUGCUG..AAAGGU.G.GU...AGU.................................................................GCG...CCAG...CAG.C......AA...AGAC......UG...A.C...A......GCAGU...UCAAAC---...CU...........................................................GUUG.CGU....CUGC.......CG.CCAGC...AACGACU.U....CC.AG.cA..--....................CUGGA...GCAAGC...AAU...ACAUC.GU.CCACCAG......u........................caGGGCGAU...AUUAUGGACCAACGCCGCGCGAAUGCGCAGCGU
   NZ_CP033844.1     UCAGAUGCUG..AAAGG-.C.GC..uGGC.................................................................GCG...CCAG...CGG.C......AA...AGAG......UG...A.U...Ag...caGUGGC...GCAAGCGAU...CU...........................................................GCUG.CGU....CUGC.......CG.CCUGC...AUCCAGC.U....--.-C.aA.gC-....................--AGC...GCCAGU...AAC...GCUUC.UA.CCUCUAC.................................GGGAGGCaccAUUAUGGACCAACGCCGCGCCAACGCGCAGCGU
   NZ_CP034035.1     UCAGAUGCUG..CGCGGA.-.--...---gcggacagcgg...........................................cgaaagcaaca---...GCAA...CAG.C......AA...U-AG......CA...A.U...A......GCAGC...AGCGCCAAU...CC...........................................................GCUG.CGU....UUAC.......CG.GCAAC...AUCGGGU.A....--.--..A..CA....................GUAGU...GCGAGC...AGU...AAUCA.GA.CG-----......cgaagcg.............guaacagCGGAAAU...AUCAUGGAUCAGCGCAGAGCGAAUGCGCAGCGU
   NZ_CP034036.1     UCAGAUGCUG..CGCGGC.G.GU...---ucauccggca............................................gcggcgagaauACG...CCGU...CAGgC......AA...C---......--...-.-...A......GCGGC...GCCAAC---...CC...........................................................GCUG.CGU....UUGC.......CC.GCUAC...---G--U.C....CG.GC..A.aCA....................GCGGG...GCGAGC...ACC...GG---.-C.CA----G......acgcgcag..........cagcaacaaUGGAAAU...AUCAUGGAUCAGCGCAGAGCGAAUGCGCAACGU
   NZ_CP034938.1     UCAGAUGCUG..CGUGGA.-.--...---caaggcagugacaa.....................................uacgcaaagcaaua---...ACAG...CAG.C......AG...CGCU......AG...-.-...-......-----...--------C...CC...........................................................ACUG.CGUuugcCUGG.......CA.ACAGC...AGCG--G.U....GC.GA.cG..AA....................UAGCA...ACCAGA...CGC...GCAG-.--.-------......cagu..................aacaaUGGAAAU...AUCAUGGAUCAGCGCAGAGCAAAUGCGCAGCGU
   NZ_CP036175.1     UCAGAUGCUG..AAAGG-.U.GC..uGGC.................................................................GCA...CCAG...CGG.C......AA...AGAG......UG...A.U...Ag...caGUGGC...GCAAGCGAU...CU...........................................................GCUG.CGU....CUGC.......CG.CCUGC...AUCCAGC.U....--.-C.aA.aCA....................---GC...GCCAGU...AAC...GCUCA.GA.CCUCUAC......g........................ggAGGCAAC...AUUAUGGACCAACGCCGCGCCAACGCGCAGCGU
   NZ_CP037864.1     UCAAAUGCUG..AAAGGC.G.GU...AGU.................................................................GCG...CCAG...CAG.C......AA...AGAG......UG...A.C...A......GCAGU...UCAAAC---...CU...........................................................GCUG.CGU....CUGC.......CG.CCGGC...AACCACU.U....CC.AG.cA..--....................CUGGA...GCAAGC...AAC...ACUUC.GU.CCACCAG......u........................caGGGCGAU...AUUAUGGACCAACGCCGCGCGAACGCGCAGCGU
   NZ_CP038469.1     CCAAAUGCUA..AAAGGU.G.GC...AAC.................................................................GCC...CCGG...CAG.C......AA...AGAG......UG...A.A...A......GCAGU...UCAAAC---...CU...........................................................GCUG.ACU....CUGC.......CG.CCAGC...AUCGUCU.U....CC.AG..-..CA....................CGGGA...GCAAGC...AAC...ACCUC.GU.CCACCAG......u........................caGGGCGAU...AUUAUGGACCAACGCCGCGUUAACGCGCAGCGU
   NZ_CP038498.1     UCAGAUGUUG..CGUGGA.C.--...A--................................................................a--G...GCAG...UGA.A......AA...UACG......CAa.aG.C...A......ACAGC...GGUGCUAAC...CC...........................................................ACUG.CGU....UUGC.......CU.-----...AGUAACA.G....CA.GC..A..GU....................GCGG-...-CGAAU...AGC...AA---.CC.CAACGC-......gcagca..............guaacaaUGGAAAU...AUCAUGGAUCAGCGCAAAGCAAAUGCGCAGCGU
   NZ_CP038662.1     UCAGAUGCUG..CGCGGC.C.AA...GGC.................................................................GCG...GCGA...CGG.A......GA...GCGG......CA...A.C...A......AGGAU...ACCAGCCUG...A-...........................................................UUCG.CCU....CAAU.......CC.GAAUC...CUGCGCC.G....G-.--..-..--....................---CU...GCCAAC...AGC...AGCAC.UC.CGCGCA-......cca....................gcggCGGAUCG...GUUAUGGAUCAGCGCCGGGCGAAUGCGCAGCGU
   NZ_CP038853.1     UCAGCUGAUG..CGUGGC.G.GU...---.................................................................---...-CAG..gCGA.C......AU...CGGG......UC...A.G...A......AUGGU...CAGAAA---...--.............................ggcggu..................aacagu-UCU.UCG....CUGC.......CA.GCCAC..cUCCGAU-.-....-C.GC..A.aCG....................CCAGC...CGCAAU...GAC...ACGUC.GU.CAUACAG......u........................ccGGACAAU...AUCAUGGAUCAGCGUCGGGCGAAUGCUCAGCGC
   NZ_CP040392.1     UCAGAUGCUG..AAAGGC.G.GCgcgAGC.................................................................GCA...CCUG...CGG.C......AA...AGAG......UG...A.C...Ag...caGUGGC...GCAAACAAC...CU...........................................................GCUG.CGC....CUGC.......CG.CCUGC...GUCCAAC.U....CU.GG.uA..--....................GCAGU...GCGAAU...AGC...GCCCC.GG.CACCAUC.................................UGCCGGAgacAUCAUGGACCAACGCCGCGUAAACGCGCAGCGU
   NZ_CP040428.1     CCAGAUGCUG..AAGGGC.-.--...GGC.................................................................---...GCUA...AAG.C......AC...CGGC......CA...A.A...Aa....uUCGGA..uAGCAGCGAU...CU...........................................................GCUG.CGU....CUGC.......CG.CCUGC...GCCGGAG.U....--.CC..A.gCA....................GUAGC...GCCAGC...CAG...UCAUC.GU.CAUCCAG......c........................agUGGCGAC...AUCAUGGACCAGCGCCGUGCUAACGCGCAGCGC
   NZ_CP041247.1     CCAGAUGCUG..AAAGGC.G.CC...GGU.................................................................GCC...CCGG...CGG.C......AA...AGAG......CG...G.U...Ag...caGUAGC...GCGAGCGAU...CU...........................................................GCUG.CGU....CUGC.......CG.CCUGC...AUCCAGC.U....--.-C.aA.gCA....................---GU...GCCAGC...ACC...ACGCC.GA.CCACCAC......g........................gaCGGCAGU...AUUAUGGACCAACGCCGCGCUAACGCGCAGCGU
   NZ_CP041764.1     GCAGAUGCUG..CG---C.G.GC...CAG.................................................................GCC...GGCG...CAU.C......CA...G---......CG...A.C...A......GCGGC...AA------C...--a...........................aagauaccagccuga.uucgucucaacccug----.---....-CGC.......CG.UCGAC...---UUCC.G....GC.--..A.aCA....................ACGCC...GGCAG-...---...--CAA.AC.CGCAG--......aa......................cagCGGUUCG...GUUAUGGACCAACGCCGGGCGAAUGCGCAGCGU
   NZ_CP041925.1     UCAGAUGCUG..AAAGGC.G.CC...ACU.................................................................GGU...GCGC...CGG.C......AA...AGAG......CG...A.U...Ag...caGUGGC...GCAAGCGAU...CU...........................................................GCUG.CGC....CUGC.......CG.CCUGC...GUCCAGC.U....--.-C.aA.gC-....................--AGC...GCCAGC...ACC...UCAUC.AA.CCUCGAG......uuca..................accggGGGUACC...AUUAUGGACCAACGCCGCGCCAACGCGCAGCGU
   NZ_CP042220.2     UCAACUGAUG..CGU---.-.--...---ggccaguuag............................................guguuucaaau---...AAUG...CGC.C......GA...UGAG......CG...G.C...A......AUGCU...GUGAAU---...--.............................ccag......................cgccGUUG.CGU....CUGC.......CG.UCAAC...CUCAUCG.-....--.--..-..--....................-----...GGCAGU...A--...AUGGU.GU.CGGCUAU......gcaccacgcuc....uuccgguaacaaCGGCACU...AUUAUGGAUCAGCGUCGCGCCAACGCGCAGCGU
   NZ_CP043318.1     UCAGAUGCUG..AAAGGC.A.AU...GCU.................................................................GCG...CCAG...CCG.C......GA...AAGG......CG...A.C...Ac...caGCGGC...GCGAACAAC...CU...........................................................GCUG.CGU....CUGC.......CG.CCUGC...CUCAA--.-....CG.GG.cA.gCG....................CCAGC...ACGAAC...ACA...ACGCC.UU.CUUCGAA......c........................gaUGGUGAC...AUUAUGGACCAACGCCGUGCUAACGCGCAGCGU
   NZ_CP043342.1     CCAAAUGCUU..AAAGGC.A.GC...UCA.................................................................GCG...CCGGcgaAAG.C......UG...--A-......UA...A.C...A......GCGGC...GCCAGCAGC...CU...........................................................GCUG.CGU....CUGC.......CG.CCAGC...GU---CA.U....CA.GG.cA.gCU....................CCAGC...GCGAAC...ACA...ACGCC.UU.CUUCGAA......c........................gaUGGUGAC...AUUAUGGACCAACGCCGUGCUAACGCGCAGCGU
   NZ_CP043727.1     UCAACUGAUG..CGUGG-.-.-C...CAA.................................................................GG-...--UG...CAG.A......UA...AAGC......AG...A.U...G......GCAGU...AAAGACACA...A-...........................................................GUCUgAUU....CGUC.......UG.AAUCC...GCCUUCC.U....CU.GC.cA.aUA....................GCAG-...-CCAAG...AAU...CUGGU.GC.AAGUAAC......ucgaauacca.......guucaaccagUGGCUCU...AUCAUGGAUCAGCGCCGGGCGAAUGCUCAGCGU
   NZ_CP044098.1     UCAAAUGCUG..AAAGGU.G.GU...AGU.................................................................GCA...CCAG...CAG.C......AA...AGAC......UG...A.C...A......GCAGU...UCAAAC---...CU...........................................................GCUG.CGU....CUGC.......CG.CCAGC...AACGACU.U....CC.AG.cA..--....................CUGGA...GCAAGC...AAC...ACAUC.GU.CCACCAG......u........................caGGGCGAU...AUUAUGGACCAACGCCGCGCGAAUGCGCAGCGU
   NZ_CP044101.1     UCAAAUGCUG..AAAGGC.G.GU...AGU.................................................................GCG...CCAG...CAG.C......AA...AGAG......UG...A.C...A......GCAGU...UCAAAC---...CU...........................................................GCUG.CGU....CUGC.......CG.CCAGC...GACGACC.U....CC.AG.cA..--....................CUGGA...GCAAGC...AAC...ACCUC.GU.CCACCAG......u........................caGGGCGAU...AUUAUGGACCAACGCCGCGCGAACGCGCAGCGU
   NZ_CP045300.1     UCAGAUGCUG..AAAGGC.G.GCgcgAGC.................................................................GCA...CCUG...CGG.C......AA...AGAG......UG...A.C...Ag...caGUGGU...GCAAACAAU...CC...........................................................GCUG.CGC....CUGC.......CA.CCUGC...GUCCAAC.U....CU.GG.cA..--....................GCAGC...GCGAAC...AGC...GCCCC.GG.CACCAUC.................................UGCCGGAaacAUCAUGGACCAACGCCGCGUAAACGCGCAGCGU
   NZ_CP045720.1     UCAACUGAUG..CGUGG-.-.--...CAC.................................................................---...CCAG..gCUG.C......AC...CGGG......CC...A.G...A......GCGGU...CAGAAG---...--.............................ggcagu.................aacaguu-CUU.-CG....CUGC.......CGgCUAUC...UCCGAUC.G....CG.GC..G.cCA....................GCCGC...A---AU...GAC...ACGUC.GU.CAUACAG......u........................ccGGACAAC...AUCAUGGAUCAGCGUCGGGCCAAUGCUCAGCGC
   NZ_CP045771.1     UCAAAUGCUG..AAAGGC.G.GU...AGU.................................................................GCG...CCAG...CAG.C......AA...AGAG......UG...A.C...A......GCAGU...UCAAAC---...CU...........................................................GCUG.CGU....CUGC.......CG.CCAGC...AACGACG.U....CC.GG.cA..--....................CUGGA...GCAAGC...AAU...ACCUC.GU.CCACCAG......u........................caGGGCGAU...AUUAUGGACCAACGCCGCGCGAACGCGCAGCGU
   NZ_CP045783.1     CCAGAUGCUG..AAAGGC.G.CC...GCC.................................................................GCG...CCGG...CAG.C......AA...AGAG......CG...A.U...Ag...caGUGAC...GCCAGCGAU...CU...........................................................GCUG.CGU....CUGC.......CA.CCUGC...AUCCAGC.A....CA.G-..-..--....................GCAGC...GCCAGC...ACC...UCAUC.AA.CCUCGAG......cuca..................accggGGGUAGC...AUUAUGGACCAACGCCGCGCUAACGCGCAGCGU
   NZ_CP045845.1     UCAGAUGCUG..AAAGGC.G.GU...AAU.................................................................GCC...CCAG...CGG.C......AA...AGAG......CG...A.U...Ag...caGUGGU...GCCAACAAC...CU...........................................................GUUG.CGC....CUGC.......CG.CCAGC...GUCCUC-.-....-U.UC.cA.gCA....................GCAGC...GCAAGU...AAC...ACGCC.GU.CUGCCAG......u........................caGGGCAAU...AUCAUGGACCAACGCCGCGCUAACGCGCAGCGU
   NZ_CP046293.1     CCAAAUGCUG..CG---C.G.GC...---caaggc.....................................................acugauGCA...AAUA...AAG.C......GG...AUGG......CA...A.C...A......AAGAU...ACAAGU---...CU...........................................................GAUU.CGU....UUGA.......AU.CCGCC...---UUCC.U....CU.GC.uA.aUA....................GCAG-...-UCAAG...AGU...CUGGU.GC.CAGCAAC......acuaauacca.......gcucaaccagUGGCUCU...AUCAUGGAUCAGCGCCGGGCGAAUGCUCAGCGU
   NZ_CP048784.1     UCAAAUGCUG..CG--UG.G.CCa.aACC.................................................................GGC...GCGG...CGG.C......GG...ACGG......CA...A.U...A......AAGAC...AC---CAGC...CU...........................................................G---.-AU....UCGU.......CU.CAACC...CCGCUCC.G...uCU.GC.cA.aCA....................GCGGC...GCCAGCucaAGC...AGCCA.GC.GCACCAG......c........................agCGGCUCG...GUCAUGGACCAGCGCCGGGCAAAUGCGCAGCGU
   NZ_CP049115.1     UCAACUGAUG..CGUGGU.G.UU...CAG.................................................................UCU...UCCU...CUG.C......GA...AGAA......CG...G.G...C......AAAAG...AGCAGC---...--gc........................agc..............................AUUG.CCG...uCACU.......UU.CCG--...AUCG--G.A....GU.GC.aA.gCC....................GCAC-...-----G...GAC...ACGUC.GU.CAUACAG......u........................ccAGACAGC...AUCAUGGAUCAGCGUCGAGCCAACGCUCUGCGC
   NZ_CP049608.1     UCAGAUGCUG..AAAGGC.G.CA...AAU.................................................................ACG...CCAG...CAU.C......AA...AGAG......CG...A.U...Ag...caGUGGC...GCGAACUCC...UU...........................................................ACUG.CGC....CUGC.......CG.CCUGC...GUCCUCA.-....--.--..-..--....................-----...UCCAGC...AAU..aACGGC.GC.UAACCGG......ccugcauc..........guccagcgcUGGCGAC...AUCAUGGAUCAGCGCCGCGCCAAUGCGCAGCGU
   NZ_CP050150.1     UCAGCUGAUG..CGCGGU.G.GC...AAAac............................................................uga--C...GCAG...CGG.C......GA...AAUC......UG...G.C...Ag...ucAGGAU...ACUAG---C...CU...........................................................GAUU.CGU....UUAG.......AC.CCAAC...GCCU--G.C....GG.CA..A.cCA....................AGUCG...UCCAGU...AAU...GCAGA.UU.CAAG---......u........................agUAGCAGC...GUGAUGGACCAGCGCCGGGCGAAUGCUCAGCGU
   NZ_CP050508.1     CCAGAUGCUG..AAAGGC.G.CC...GGU.................................................................ACG...CCGG...CAG.C......AA...AGGG......CA...A.U...Ag...caGCGGU...GCGAACGAU...CU...........................................................GCUG.CGC....CUGC.......CG.CCUGC...UUCCAGC.U....--.-C.aA..--....................GCAGC...GCCAGC...ACC...ACGUC.GA.CCACUAC......g........................gaUGGCAAC...AUUAUGGACCAACGUCGCGCUAACGCGCAGCGU
   NZ_CP050854.1     UCAGAUGCUG..CGCGG-.-.GC...AAG.................................................................GCG...CCGA...AAG.C......AC...GCCAa....gCA...A.C...A......GUGGU...UCCAAU---...AC...........................................................GCUG.CGU....UUGC.......CG.ACAAC...----G-C.C....AA.GC..A.gCG....................GCUCG...GCCAGC...ACC...AGUCA.GA.CG-----......cgaagcag..........uaguaauaaCGGAAAU...AUCAUGGAUCAGCGCAGAGCAAAUGCGCAGCGU
   NZ_CP051548.1     UCAGAUGCUG..AAAGGC.G.GG...AAU.................................................................GCA...CCUG...CGG.C......AA...AGAG......CG...A.U...Ag...caGUGGC...GCGAACAAC...CU...........................................................UCUG.CGC....CUGC.......CG.CCUGC...GUCCUCU.U....CC.GG.uA.aCA....................GCGGU...GCGAGC...AAU...UCAUC.GU.CUAUCAG......u........................caGGGCGAC...AUUAUGGACCAACGCCGCGCUAACGCGCAGCGU
   NZ_CP054043.1     UCAAAUGCUG..CGCGGU.-.-C...AAG.................................................................GCG...CAG-auaAAG.C......GG...AUGG......CA...A.C...A......AAGAC...ACCAGC---...CU...........................................................GCUU.CGU....UUGA.......AU.CCGCC...UUCCUCU.G....CU.AA.uA.gCA...gcca........agaguCUGGU...GCAAGU...AAC...UCAAG.CU.CAACCAG.................................UGGCUCU...AUCAUGGAUCAGCGUCGAGCGAAUGCUCAGCGU
   NZ_CP054058.1     UCAGAUGCUG..AAAGGU.G.GC...AGU.................................................................GCCgcaCCUG...CAA.A......AA...AGAA......UG...A.C...Ag...caGUGGC...GCCGACAGC...CU...........................................................AUUG.CGC....UUGC.......CA.CCUGC...AUCCAGU.U....--.-C.gA.gC-...agucgc....gccaacaGCAAU...AGCAGC...AGC...GCACC.GG.CAUCAAG......c........................gaUGACAAU...AUCAUGGACCAACGCCGUGCGAAUGCGCAGCGU
   NZ_CP055055.1     CCAGAUGCUG..AAAGGU.G.GU...AAC.................................................................GCC...CCUG...CGG.C......GA...AGAG......CG...A.U...A......ACGGU...GCCAGCAAU...CU...........................................................GCUG.CGU....CUGC.......CG.CCAGC...CUCUUCC.U....CC.AC.aA.cCA....................GUGGA...GCAAGC...AAC...ACGUC.GU.CCACCAG......u........................caGGGCGAU...AUUAUGGACCAACGCCGCGCCAAUGCGCAGCGU
   NZ_CP055292.1     CCAGAUGCUG..AAAGGU.G.GU...AAC.................................................................GCC...CCUG...CGG.C......GA...AGAG......CG...A.U...A......ACGGU...GCCAGCAAU...CU...........................................................GCUG.CGU....UUGC.......CG.CCAGC...CUCUUCC.U....CC.AC.aA.cCA....................GUGGA...GCAAGC...AAC...ACGUC.GU.CCACCAG......u........................caGGGCGAU...AUUAUGGACCAACGCCGCGCCAACGCGCAGCGU
   NZ_CP063425.1     UCAGAUGCUG..AAAGGU.G.GU...AAU.................................................................GCCgcgCCUG...CGG.C......AA...AGAG......UG...A.C...Aa...caGUGGC...GCGAAUAAC...UU...........................................................GCUG.CGU....CUGC.......CG.CCAGC...GUCA--A.G....CU.CC..A.gUA....................GCAGC...GCCAAC...AGC...GCCCC.CG.CAA----......cgu....................cugcGGGAGAU...AUCAUGGACCAACGCCGCGUUAACGCGCAGCGU
   NZ_CP065044.1     UCAGAUGCUG..CGUGGA.-.--...---caaggcgguga...........................................aaauacgcaaa---...GCAA...CAG.C......AA...U---......-A...A.C...A......GCAGC...GCUAGC---...CC...........................................................ACUG.CGU....CUGC.......CC.ACUGG...-------.-....--.--.cA.gCA....................GCGGUgcaGCGAAU...AG-...-----.--.CAACCAG......acgcgcag..........caguaacaaUGGAAAU...AUCAUGGAUCAGCGCAGAGCAAAUGCGCAGCGU
   NZ_CP065178.1     UCAGAUGCUG..CGUGGA.C.--...---aagguggugaaaa......................................uacgccaagcaaua---...ACAG...CAG.C......AG...CGCU......--...-.-...-......-----...---AGU---...CC...........................................................ACUG.CGU....UUGC......cUG.GCAACagcAGCG--G.U....GC.GA.cG..AA....................UAGCA...ACCAAA...CGC...GCAGC.AG.CA-----......ac.......................aaUGGAAAU...AUCAUGGAUCAGCGCAGAGCAAAUGCGCAGCGU
   NZ_CP065534.1     ACAGAUGCUG..CGUCAG.-.--...---a..............................................................ac---...ACUA...CGG.G......UA...CGGG......CG...G.C...A......AUGCG...AGCAAC---...--.............................gcggu...................ugcuccGCUG.CGU....AAUU.......CC.UCGAC...CUCG--U.C....UA.AC.aA..CG....................GUUCG...AGCAGC...ACCuauAAUUC.UU.CGCG---......cagcag...............caucaaCGGCAAC...AUCAUGGAUCAGCGCCGGGCCAACGCCCAGCGG
   NZ_CP065640.1     GCAGAUGCUG..CG---U.G.GC...CAG.................................................................GCC...GGCG...CAG.C......CA...G---......CG...A.C...A......GCGGC...AA------C...--............................aaagacaccagccugauucgucuuaacccug----.---....-CGC.......CG.UCGAC...---UUCC.G....GC.--..A.gCA....................ACGCC...GGCAGU...AAA...CC---.GC.AGAACAG......c.........................gGUUC--G...GUUAUGGACCAACGCCGGGCGAAUGCGCAGCGU
   NZ_CP065838.1     UCAGAUGCUG..AAAGGC.G.CC...GCU.................................................................GCG...CCGG...CAG.C......AA...AGAG......CG...A.U...Ag...caGUGAC...GCCAGCGAU...CU...........................................................GCUG.CGC....CUGC.......CG.CCAGC...AUCCAGC.U....--.-C.aA.gC-....................--AGC...GCCAGC...ACC...UCAUC.AA.CCUCGAG......cuca..................accggGGGUAGC...AUUAUGGACCAACGCCGCGCUAACGCGCAGCGU
   NZ_CP070290.1     CCAGAUGCUG..AAAGGC.G.GU...AAU.................................................................GCG...CCUG...CGG.U......GA...AGAG......CG...A.C...A......ACAAC...GCCAGCAAC...UU...........................................................GUUG.CGC....CUGC.......CG.CCAGC...GCCUUCC.U....CC.AC.gA.aCA....................GUGGA...GUAAGC...AAC...ACAUC.GU.CCACCAG......u........................caGGGCGAU...AUUAUGGACCAACGCCGCGCUAACGCGCAGCGU
   NZ_CP071070.1     UCAGAUGCUG..AAAGGC.G.GC...AAC.................................................................GCG...CCGG...CAA.C......AA...AACG......CG...A.C...A......GCGGU...UCCGAC---...CU...........................................................GCUG.CGC....UUGC.......CG.ACUAC...GUCAUCU.U....CCaGC..A.gUA....................GCGGA...GCAAGC...AAC...ACCUC.GU.CCACCAG......u........................caGGGCGAU...AUUAUGGACCAACGCCGCGCUAACGCGCAGCGU
   NZ_CP071320.1     UCAGAUGCUG..CGCGGC.C.AA...GGC.................................................................GCG...GCGA...CGG.A......GA...GCGG......CA...A.C...A......AGGAU...ACCAGCCUG...A-...........................................................UUCG.CCU....CAAU.......CC.GAAUC...CAGCGCC.G...gCU.GC.cA.aCA....................GCAGC...AC----...---...--CCC.GC.GCACCAG......c........................agCGGAUCG...GUUAUGGAUCAGCGCCGGGCGAAUGCGCAGCGU
   NZ_CP071383.1     UCAGAUGCUG..AAGGGC.G.GU...AAC.................................................................GCG...CCUG...CGG.C......GA...AAGAu...agCA...A.U...A......GCGGU...GCAAACAGC...AU...........................................................GCUA.CGU....CUGC.......CA.CCGUC...UUC---A.U....CA.GG.uA.aUU....................CCAGU...GCGAAU...ACA...ACCUC.UA.CGAACGA.................................GGGUGAC...AUCAUGGACCAACGCCGUGCUAACGCGCAGCGU
   NZ_CP071405.1     UCAGCUGAUG..CGUGGC.G.GU...CAG.................................................................GCU...UCCU...CAGgC......CA...GAAC......GGu.cA.G...A......AGGGC...GCGAACAGU..gCU...........................................................UCUC.UGC....CUGC.......CA.UCUCC...GACCGCA.-....--.GC..G.cAA....................GC---...CGCAAU...GAC...ACGUC.GU.CAUACAG......u........................ccGGACAAC...AUCAUGGAUCAGCGUCGGGCCAAUGCUCAGCGC
   NZ_CP071409.1     CCAGCUGAUG..CGUAGU.G.GG...---caaagc....................................................ggagcguCCU...CUAA...AAA.U......AA...UACU......CAg.gA.C...A......GCAGU...AGUAACAGC...CU...........................................................GUUG.CGC....CUGC.......CA.CCGGC...GUCG--G.A....AA.GU..A.gCA....................GCAAU...GCCAGU...AGC...AGUUC.GU.CGUUCAG......u........................ccAGACAAC...AUCAUGGAUCAGCGUCGUGCUAACGCUCAACGC
   NZ_CP071802.1     UCAAAUGCUG..CG---U.G.GA...CAG.................................................................GCU...GGUA...CGG.A......UA...AAGC......CG...A.A...G......CCAAU...AAAGACUCG...A-..........................................................gUCUG.AUU....CGUU.......UG.AAUCC...GUCUUCC.U....CU.AC.gG.cAA....................GCAGC...UCGGAU...A--...--AGA.GCgCAUCUAG......cuca..................aauucUGGCUCU...GUCAUGGAUCAGCGUCGGGCAAAUGCCCAGCGU
   NZ_CP072652.1     UCAAAUGCUA..CGCGGC.C.ACgcuAAU.................................................................GUU...CCGG...CGG.A......CA...GUAG......CG...A.C...A......AAGAC...AC---CAGC...CU...........................................................G---.-AU....UCGU.......CU.CACCC...CUGUUCC.C....UCuGC.cA..--....................ACGGC...GGCAGU...AGU...UCCA-.-A.CAGCCAG......caaac................ccgcagUGGUUCG...AGCAUGAACCAACGCCAGGCAAAUGCGCAGCGC
   NZ_CP073236.1     UCAGAUGCUU..AAAGGC.G.CC...GGC.................................................................GCG...CCGG...CGG.C......AA...AGAG......CG...A.U...Ag...caGUGGC...GCAAGCGAU...CU...........................................................GCUG.CGU....CUGC.......CG.CCUGC...AUCCAGC.U....--.-C.aA.aCA....................---GC...GCCAGC...AAC...GCUUC.UA.CCUCUAC.................................GGGAGGCacuAUUAUGGACCAACGCCGCGCCAACGCGCAGCGU
   NZ_CP073262.1     UCAACUGAUG..CGUGGA.-.--...CAA.................................................................GCC...---G...CUG.C......GG...GUGG......CA...A.C...Ag...ucAGGGC...AGCAGCAC-...--...........................................................UCUG.ACG....CGGC.......CA.CCGGC...UAACGGU.G...aCA.GC..A.gCA....................GUCGC...GCGAAC...AAC...AGUGC.UU.CAUGGAG......u........................ccGGAAAAU...AUCAUGGACCAGCGUCGGGCCAAUGCUCAGCGC
   NZ_CP074352.1     CCAGAUGCUG..AAAGGC.A.AU...GCG.................................................................GCU...CCGG...CUG.C......AA...AAAA......UGauaA.C...A......GCGGU...GAUAACUCU...CU...........................................................GCUG.CGU....CUGC.......CG.CCGGC...GUCAUCC.AauacCG.GC..A.gCA....................ACCGC...GCCAGC...AGC...GCAUC.GU.CGUCAU-......cau....................cgaaUGCCGAU...AUCAUGGACCAACGCCGCGCCAACGCGCAGCGU
   NZ_CP077262.1     UCAGAUGCUG..AAAGGC.G.GU...AAU.................................................................GCG...CCAG...CAG.C......UA...AGAC......UG...A.C...A......GCAGU...UCAAAU---...CU...........................................................GCUG.CGU....CUGC.......CA.CCGGC...AACGUCU.U....CC.GG.cA..--....................CUGGA...GCAAGC...AAC...ACCUC.GU.CCACCAG......u........................caGGGCGAU...AUUAUGGACCAACGCCGCGCGAAUGCGCAGCGU
   NZ_CP077366.1     UCAACUGAUG..CGUGGC.G.GU...CAG.................................................................ACU...UCAU...CGGgC......CAg.aAUGG......UC...A.G...A......AAGGC...GCGAAU--G...GU...........................................................UCUU.CGC....-UGC.......CU.GCGCG...CUCC--G.A....UA.GC..A.gUG....................CCAGC...CGCAAU...GAA...ACGUC.GU.CAUACAG......u........................ccGGACAAC...AUCAUGGAUCAGCGUCGGGCAAAUGCUCAGCGC
   NZ_CP077392.1     UCAGAUGCUU..AAAGGC.G.GU...UCU.................................................................GCA...CCGG...CAG.C......AA...AAGA......CA...A.C...A......GCGGA...GCCAACAAC...CU...........................................................GCUG.CGU....CUGC.......CG.CCAGC...C-UC--G.U....CU.GG.cA.gCU....................CCAGC...GCGAAC...ACA...ACGCC.UU.CUUCGAA......c........................gaUGGUGAC...AUUAUGGACCAACGCCGUGCUAACGCGCAGCGU
   NZ_CP081864.1     UCAACUGAUG..CGCG--.-.GU...CAG.................................................................ACA...--GG...CAA.U......GC...UA-G......CG...G.U...A......ACGCC...ACCAGUAAC...AC.............................gacggc..................ugcgccGAUG.CGU....CUGC.......CC.UCUGC...ACCG---.-....--.-AacA.aCA...acggag....caaccac-----...-CGGAC...AAA...CCCGU.AC.CAGCA--......cg.......................ggUGGAACC...GUCAUGGACCAGCGUCGCGCAAACGCGCAGCGU
   NZ_CP082141.1     UCAGCUGAUG..CGUGGC.C.AG...---ggg..........................................................gcguCUG...CCAA...CAG.C......CA...GGAU......-G...C.A...A......GCGGU...------GGG...CU...........................................................GCUG.CGU....CUGC.......CA.CCGGC...AUCA--G.G....CA.GU.aA.cGA....................AC-GC...GCCAGC...GGC...AGUUC.GU.CGUUCAG......u........................ccGGACGAC...AUUAUGGAUCAGCGCCGGGUGAAUGCUCAGCGU
   NZ_CP082346.1     UCAGCUGAUG..CGUGGC.G.GC...CAG.................................................................GCA...--GG...CGG.C......CA...----......--...-.G...A......GCGGU...CAGAACAAU...G-............................ccaa........................ucuGAUG.AAG....UUAC.......CG.UCGUC...---ACCG.G....GC.AG.cA.aUG....................CCGGC...CGCGGC...GAC...ACUUC.AU.CCUACAG......u........................ccGGACAGC...AUCAUGGAUCAGCGUCGCGCCAAUGCGCUGCGU
   NZ_CP082787.1     UCAAAUGCUG..CG---C.G.GC...CAG.................................................................GCC...AAUG...CGG.C......GG...ACGG......CG...G.C...Aa....uAAGGA...--CUCUAGC...CU...........................................................GAUU.---....-CGC.......CU.CAACC...CCGCUCC.G...uCU.GC.cA.gCA....................GCGGC...UCCAGC...AGC..cAGCGU.AC.CGGCG--................................aCGGUUCG...GUCAUGGACCAACGCCGGGCGAAUGCGCAGCGU
   NZ_CP082833.1     UCAGAUGCUG..AAAGGC.G.GU...AAU.................................................................GCG...CCAG...CGG.C......GA...AACG......CG...A.U...A......GCGGU...UCCGAC---...CU...........................................................GCUG.CGU....CUGC.......CG.GCGAC...AUCCUCU.U....CC.GG.cA.aUA....................GUGGA...GCAAGC...AAC...ACAUC.GU.CCGCCAC......u........................caGGGCGAU...AUUAUGGACCAACGCCGCGCUAACGCGCAGCGU
   NZ_CP083448.1     CCAGCUGCUG..CGCAAC.G.GC...CAG.................................................................UCA...--GG...CAG.C......CA...GAGC......GG...U.C...A......GAAC-...AACACUAAC...CU...........................................................GAUG.AAA....UUGC.......CU.UCGUC...GCUAGG-.-....CA.GC..A.gUG....................CCGAU...CGCAAC...AGU...AACUC.AU.CUUAUAG......u........................ccGGACAGC...GUCAUGGACCAGCGUCGCGCAAACGCGCUGCGC
   NZ_CP083638.1     CCAGAUGCUG..AAAGGU.G.GC...AAU.................................................................GCC...CCUG...CGG.C......GA...AGAG......CG...A.U...A......ACGGU...GCCAGCAAU...CU...........................................................GCUG.CGU....CUGC.......CG.CCAGC...CUCUUCC.U....CC.AC.aA.cCA....................GUGGA...GCAAGC...AAC...ACGUC.GU.CCACCAG......u........................caGGGCGAU...AUUAUGGACCAACGCCGCGCUAACGCGCAGCGU
   NZ_CP083737.1     UCAACUGAUG..CGCGGC.G.GU...AA-aucuggca.................................................caacgaccACG...CCGA..gUAC.C......GA...UAUG......-G...A.U...A......GUGCA...------AGU...CC...........................................................----.---....--GG.......CA.CCAUC...UGUAAC-.-....--.--..-..--....................-----...-CAAGC...CAU...CAAGU.AA.CGUAGAU......uuaa...................gcggCGAUAGU...GUGAUGGACCAGCGCCGAGCGAAUGCUCAGCGU
   NZ_CP084032.1     UCAGAUGCUG..CGUGGA.-.--...---caaagugcuga...........................................caauacgcaaa---...GCAA...CAG.C......AG...U---......-A...A.C...A......CCAGC...GCUAGC---...CC...........................................................ACUG.CGU....CUGCccacuggCA.ACAGC...GGGGCG-.-....--.GC.gA.aUA....................GC--A...ACCAGA...CG-...-----.--.-------......cgcagca.............gcaacaaUGGAAAU...AUCAUGGAUCAGCGCAGAGCAAAUGCGCAGCGU
   NZ_CP084521.1     UCAAAUCAUGcgCUCGGG.C.G-...---aua..........................................................aagg-CG...CCAG..cCAG.G......CC...GGAG.....aCA...G.C...A......AAGA-...------U--...--ac.........................ca..............................GCCU.GAU....CCGG.......CU.CAAUC...CGCC--G.C....AG.G-..-..--....................-----...-CCAGC...AGC...AAGCC.GG.U---CAG......cgcgggcag.........cagcacggaCAGCAGC...GUGAUGGACCAGCGUCGCGUCAACGCACAGCGU
   NZ_CP084874.1     CCAGAUGCUG..AAAGGC.G.CC...GCU.................................................................GCG...CCGG...CAG.C......AA...AGAG......CG...A.U...Ag...caGUGAC...GCCAGCGAG...CU...........................................................GCUG.CGC....CUGC.......CG.CCAGC...AUCCAGC.U....--.-C.aA.gC-....................--AGC...GCCAGC...ACC...UCAUC.AA.CCUCGAG......cuca..................accggGGGUAGC...AUUAUGGACCAACGCCGCGCUAACGCGCAGCGU
   NZ_CP085627.1     UCAGCUGAUG..CGUGGC.-.--...CAG.................................................................GGC...GGUG...CAU.Cu...gcCA..gUGGU......CA...-.G...G......AUGGA...AGCGGCGGU...CU...........................................................GCUG.CGU....CUGC.......CA.CCGGC...AUCA--G.G....CA.GU.aA..CG....................AGCGC...GCCAGC...GGC...AGUUC.GU.CGUUCAG......u........................ccGGACGAC...AUUAUGGAUCAGCGCCGGGUGAAUGCUCAGCGU
   NZ_CP086253.1     UCAGAUGCUG..CGUGGA.C.--...---aagguagugaaaa......................................uacgccaagcaaua---...ACAG...CAG.C......AG...CGCU......--...-.-...-......-----...---AGU---...CC...........................................................ACUG.CGU....UUGC......cUG.GCAACagcAGCG--G.U....GC.GA.cG..AA....................UAGCA...ACCAAA...CGC...GCAGC.AG.CA-----......ac.......................aaUGGAAAU...AUCAUGGAUCAGCGCAGAGCCAAUGCGCAGCGU
   NZ_CP087880.1     CCAGAUGCUG..AAAGGC.G.GG...AAU.................................................................ACU...UCCG...GUG.C......AA...AGAA......CG...A.U...Aa...caGCGGG...GCCAACAAC...CU...........................................................GCUG.CGU....CUGC.......CG.CCGGC...GUCUUCC.U....CCaGC..A.aCA....................GCGGA...GCGAGC...AAC...UCAUC.GU.CCACCAG......u........................caGGGCGAC...AUUAUGGACCAACGCCGCGCUAACGCGCAGCGU
   NZ_CP089919.1     UCAAAUGCUG..CGCGGA.A.AU...AAC.................................................................G--...CCG-...CAG.C......CA...ACGA......CA...C.C...A......GCAAG...---------...--aaugauga.............cacagguu..............................----.---....-UAC.......UG.CCUUC...-CGUUCC.G....GG.GUugA.cCA....................GCAGU...AACAGC...AAA..aGCAGU.GC.CGAUAAC......agcaguuc..........ccguucgucUGGCAGU...GUCAUGGACCAACGCCGUGCCAAUGCACAGCGU
   NZ_CP089932.1     UCAGCUGAUG..CGUGGA.C.--...---agacgg....................................................aggcuaa--G...GCAA...CAA.G......CU...CGCA......GG...A.G...A......GCACC...AGCAACAAU...CU...........................................................GUUU.CGC....AUGG.......CA.CCAGC...CACGAGU.C....CU.GGcgAugCA...................gCCGGC...AACAGC...AAU...UCGUU.GA.AUAAU--......u.........................cGGCCAGU...UUCAUGGAUCAGCGUCGGGAAAAUGCUCUGCGC
   NZ_CP090968.1     UCAAAUCAUG..CGCUC-.-.--...---gggc.........................................................gaua---...----...---.-......AA...GGCG......CC...AgC...C......AGGCC...GGAGAC---...--.............................aguaaa.................gauaccaGCCU.AAU....CCGG.......CU.CAAUC...CGCC--G.C....AG.G-..-..--....................-----...-CCAGC...AGC...AAGCC.G-.--GCCAG......cgcgggcagc.......agcacggaca--GCAGC...GUGAUGGACCAGCGUCGCGUCAACGCACAGCGU
   NZ_CP091779.1     UCAGAUGCUG..AAAGGC.G.GU...UCU.................................................................GCA...CCGG...CUG.C......GA...AAGA......CA...C.C...A......GCGGU...GCGAAUAAC...CU...........................................................GCUG.CGU....CUGC.......CA.CCAGC...CUCUU--.-....CA.GG.cA.aCG....................CCAGC...GCGAAC...ACA...ACGCC.UU.CUUCGAA......c........................gaUGGUGAC...AUUAUGGACCAACGCCGUGCUAACGCGCAGCGU
   NZ_CP093328.1     UCAAAUGCUG..CGUGGA.A.AU...AAC.................................................................---...GCAG...CAG.C......CA...ACGA......CA...C.C...A......GCAAA...AAUGAUGA-...--...........................................................AACA.GGU....UUGU.......UG.CCUUC...-CGUUCC.A...gGU.UU.aA.cCA....................GCAGU...AACAGU..aAAA...GCAGU.GC.CGAUAAC......agcaguuc..........ccguucgucUGGCAGU...GUCAUGGACCAGCGCCGUGCAAAUGCACAGCGU
   NZ_CP093332.1     UCAGAUGCUG..AAAGGU.G.GC...---uc............................................................uca--G...CCUG...CAG.C......AA...AGAG......UG...A.C...Ag...caGUGGC...GCGAAUAAU...CU...........................................................GUUG.CGU....UUGC.......CA.CCUGC...AUCCGGC.U....CU.AG.cA.gCG....................GUAGC...GCCAGC...ACA...CCGUC.CU.CAACUAG......u........................caGGGCGAU...AUCAUGGAUCAGCGCCGCGUGAACGCGCAGCGC
   NZ_CP093334.1     CCAGAUGCUG..AAAGGC.G.CC...GGU.................................................................GCU...CCGG...CGG.C......AA...AGAG......CG...G.U...Ag...caGUGGC...GCGAGCGAU...CU...........................................................GCUG.CGU....CUGC.......CG.CCUGC...AUCCAGC.U....--.-C.aA.gCA....................---GU...GCCAGC...ACC...ACGCC.GA.CCACCAC.................................GGACGGCaacAUUAUGGACCAACGCCGCGCUAACGCGCAGCGU
   NZ_CP096201.1     UCAAAUGCUG..AAAGGC.G.GU...AAC.................................................................GCC...CCGG...CAG.C......AA...AGAG......CG...A.U...Ag...caGUGGU...GCGAACAAC...CU...........................................................GUUG.CGC....CUGC.......CG.CCUGC...GUCCUC-.-....-U.UC.cA.gCA....................GCAGC...GCAAGC...AAC...ACGUC.GU.CUGCCAG......u........................caGGGCAAU...AUCAUGGACCAACGCCGCGCUAACGCGCAGCGU
   NZ_CP100494.1     UCAGAUGCUG..AAAGGC.A.AU...AAU.................................................................GCC...CCGG...CAU.C......AA...AGAG......CG...A.U...Ag...caGUGGC...GCGGAUUCC...UU...........................................................ACUG.CGC....CUGC.......CG.CCUGC...GUCCUCA.U....CCaGC..A.aCA....................GCGGC...GCUAAC...CGG...CCUGC.CU.CAUCCAG......c........................gcUGGCGAC...AUCAUGGAUCAGCGCCGUGCGAAUGCGCAGCGU
   NZ_CP104006.1     UCAACUGAUG..CGCGGA.-.-C...AAGg..............................................................ca---...----...CAG.A......UA...AAGC......GGaugG.C...A......GCAAA...GACACAAG-...--...........................................................UCUG.AUU....CGUU.......UG.AAUCC...GCCUUCC.U....CU.GC.uA.aUA....................GCAG-...-CCAAG...AGU...CUAGU.GC.CAGUAAC......ucaagcaccg.......gcucaacuagUGGCUCU...AUCAUGGAUCAGCGCCGGGCGAAUGCUCAGCGU
   NZ_CP107077.1     UCAGAUGCUG..AAAGGC.G.GU...AAC.................................................................GCG...CCAG...CGG.C......GA...AGAG......CG...A.C...Ag...caACGGC...GCAAAUAAU...CU...........................................................GCUG.CGU....CUGC.......CG.CCUGC...CUCCAAU.U....CC.GG.cA.gCA....................ACGCC...AACAGC...AAU...UCGAC.UU.CCUCAGC.................................GGGAGAU...AUCAUGGAUCAACGCCGCGUCAACGCGCAGCGU
   NZ_CP109947.1     UCAGAUGCUA..CGUG--.G.GC...AAG.................................................................GUC...AAGC...UAG.C......G-...---G......AA...A.U...Ac...guCAAGC...AACAGUAAU...A-gcagc..................gcgagcc............................cACUG.CGU....UUAC.......CU.ACUAG...CAGCAGC.G....CG.GC.gA.aUA....................GCAAC...GCAAC-...---...-----.--.-GCGCAG......uagu..................aauaaUGGAAAU...AUCAUGGAUCAACGCAAAGCCAACGCGCAGCGU
   NZ_LN999833.1     CCAGAUGUUG..CGCAAC.G.--...---cgucaaccggca........................................auacuaagacuag--C...UUGG..gCGA.C......GA...UACC......--...-.-...-......-----...---------...--.............................cuuaauu...............ugccgcagUUGC.CUU....CUGG.......CA.UCUCC...GGC----.G....GU.--..-..--....................--ACC...GCGACC...ACA...CCUGC.UG.UAGGUAG......caac..................gucagUGGAACA...AUCAUAGAUCAACGACAUGCCAAUGUACAACGU
   NZ_LR134201.1     UCAGAUGUUG..AAGGGC.G.GC...---gc............................................................ucaGCA..gCCGG...CCG.C......GA...AGAG......CG...A.C...A......GCAGUgcaGCCAGUAAC...CU...........................................................GCUG.CGU....CUGC.......CG.CCAGC...GUCCAGC.U....CA.--..A.gCA....................GCAGU...GCCAGC...ACC...UCUUC.GU.CCUCCUC......g........................agUGGCGAU...AUCAUGGAUCAGCGUCGUGCUAACGCACUGCGC
   NZ_LR134485.1     UCAGAUGCUG..AAAGGU.G.GU...AAU.................................................................GCG...CCAG...CAG.C......GA...AGAG......CG...A.C...A......GCAGU...UCAAAU---...CU...........................................................GCUG.CGU....CUGC.......CA.CCAGU...AACGUCU.U....CC.AG.cA..--....................CUGGG...GCAAGC...AAC...ACCUC.GU.CCACCAG......u........................caGGGCGAU...AUUAUGGACCAACGCCGCGCGAACGCGCAGCGU
   NZ_LR134494.1     UCAAAUGCUG..CG--UG.G.CCa.aACC.................................................................GGC...GCGG...CGG.C......UG...AAGG......CA...G.U...A......AAGAC...AC---CAGC...CU...........................................................G---.-AU....UCGU.......CU.CAACC...CCGCUCC.G...uCU.GC.cA.aCA....................GCGGC...GCCAGC...UCC...AGCA-.GC.CA-----......gcgcac...............caguaaCGGCACG...GUCAUGGACCAGCGCCGGGCGAAUGCGCAGCGU
   NZ_LT615367.1     UCAACUGAUG..CGUGGG.C.AG...AAU.................................................................A--...CCGG...CA-.C......AC...CGUC......UG...G.C...A......ACGGC...AGUGCCAAU...GC...........................................................GGCU.CCG....GCCC.......CG.UUACG...CUUGCC-.-....--.--..A.gCG....................-----...GCAGGU...AGC..cCGGGU.GC.CAGCUAU......acgccacgcac....gucuggugcgaaUGGCAGC...AUUAUGGAGCAGCGCCGCGCCAACGCGCAGCGU
   NZ_LT906479.1     UCAAAUGCUG..CG---C.G.GC...CAG.................................................................GCC...AAUG...CGG.C......GG...ACGG......CG...G.C...A......AUAAG...GACUCUAGC...CU...........................................................GAUU.C--....--GC.......CU.CAACC...CCGCCCC.G...uCU.GC.cA.aCG....................GCGGC...UCCAGC...AGC..cAACGC.AC.CGGCA--................................aCGGCUCG...GUCAUGGACCAACGCCGGGCGAAUGCGCAGCGU


   Structure         (((...((((....(((..(.((.......................................................................)))...)))....))).)...........((((.........................((((...((((((...................................................................))))..))......)).......)).........))))..(.(....((.((...........................)))))...)................(((.((.((......................................))))))).......)))....((((.((((....)))).))))


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nnr-tsaE-amiB-mutL-miaA-hfq-hflX-hflK-hflC



Position: 9443-9582, Conformation: #1







97% 90% 75% 50% Nucleotide present N N N Nucleotide identify E < 0.1 Base-pair covariation E < 0.05 Helix-level covariation 97% 90% 75%

U C A R U G U G R G G Y R C R R C R R Y R R Y A R R R R R Y Y R Y Y R Y Y Y R Y C Y C C Y A A R Y R Y C G R Y R Y R U Y A U G G A Y C A R C G Y C G G C A A Y G C C A G C G U 5'