nnr-tsaE-amiB-mutL-miaA-hfq-hflX-hflK-hflC



Position: 10478-10602, Conformation: #0







DMS reactivity > 1.0 0.0 0.4 0.7 G/U/No data
Position: 0 (position.label in template: 0.5')5' Position: 1 (position.label in template: 1.A) Reactivity: nanA Position: 2 (position.label in template: 2.G) Reactivity: nanG Position: 3 (position.label in template: 3.C) Reactivity: nanC Position: 4 (position.label in template: 4.C) Reactivity: nanC Position: 5 (position.label in template: 5.A) Reactivity: nanA Position: 6 (position.label in template: 6.A) Reactivity: nanA Position: 7 (position.label in template: 7.A) Reactivity: nanA Position: 8 (position.label in template: 8.C) Reactivity: nanC Position: 9 (position.label in template: 9.U) Reactivity: nanU Position: 10 (position.label in template: 10.G) Reactivity: nanG Position: 11 (position.label in template: 11.U) Reactivity: nanU Position: 12 (position.label in template: 12.U) Reactivity: nanU Position: 13 (position.label in template: 13.U) Reactivity: nanU Position: 14 (position.label in template: 14.G) Reactivity: nanG Position: 15 (position.label in template: 15.C) Reactivity: nanC Position: 16 (position.label in template: 16.U) Reactivity: nanU Position: 17 (position.label in template: 17.G) Reactivity: nanG Position: 18 (position.label in template: 18.A) Reactivity: nanA Position: 19 (position.label in template: 19.U) Reactivity: nanU Position: 20 (position.label in template: 20.G) Reactivity: nanG Position: 21 (position.label in template: 21.C) Reactivity: nanC Position: 22 (position.label in template: 22.A) Reactivity: nanA Position: 23 (position.label in template: 23.U) Reactivity: nanU Position: 24 (position.label in template: 24.U) Reactivity: nanU Position: 25 (position.label in template: 25.C) Reactivity: nanC Position: 26 (position.label in template: 26.A) Reactivity: nanA Position: 27 (position.label in template: 27.G) Reactivity: nanG Position: 28 (position.label in template: 28.U) Reactivity: nanU Position: 29 (position.label in template: 29.A) Reactivity: nanA Position: 30 (position.label in template: 30.A) Reactivity: nanA Position: 31 (position.label in template: 31.A) Reactivity: nanA Position: 32 (position.label in template: 32.G) Reactivity: nanG Position: 33 (position.label in template: 33.A) Reactivity: nanA Position: 34 (position.label in template: 34.U) Reactivity: nanU Position: 35 (position.label in template: 35.C) Reactivity: 0C Position: 36 (position.label in template: 36.C) Reactivity: 0C Position: 37 (position.label in template: 37.G) Reactivity: nanG Position: 38 (position.label in template: 38.G) Reactivity: nanG Position: 39 (position.label in template: 39.A) Reactivity: 0.5A Position: 40 (position.label in template: 40.C) Reactivity: 0.5C Position: 41 (position.label in template: 41.U) Reactivity: nanU Position: 42 (position.label in template: 42.U) Reactivity: nanU Position: 43 (position.label in template: 43.C) Reactivity: 0C Position: 44 (position.label in template: 44.U) Reactivity: nanU Position: 45 (position.label in template: 45.A) Reactivity: 1A Position: 46 (position.label in template: 46.C) Reactivity: 0.5C Position: 47 (position.label in template: 47.G) Reactivity: nanG Position: 48 (position.label in template: 48.C) Reactivity: 0C Position: 49 (position.label in template: 49.A) Reactivity: 1A Position: 50 (position.label in template: 50.U) Reactivity: nanU Position: 51 (position.label in template: 51.U) Reactivity: nanU Position: 52 (position.label in template: 52.C) Reactivity: 0C Position: 53 (position.label in template: 53.A) Reactivity: 0A Position: 54 (position.label in template: 54.U) Reactivity: nanU Position: 55 (position.label in template: 55.C) Reactivity: 0C Position: 56 (position.label in template: 56.C) Reactivity: 0C Position: 57 (position.label in template: 57.G) Reactivity: nanG Position: 58 (position.label in template: 58.U) Reactivity: nanU Position: 59 (position.label in template: 59.A) Reactivity: 0.5A Position: 60 (position.label in template: 60.G) Reactivity: nanG Position: 61 (position.label in template: 61.C) Reactivity: 0.5C Position: 62 (position.label in template: 62.C) Reactivity: 0C Position: 63 (position.label in template: 63.U) Reactivity: nanU Position: 64 (position.label in template: 64.G) Reactivity: nanG Position: 65 (position.label in template: 65.C) Reactivity: 0C Position: 66 (position.label in template: 66.G) Reactivity: nanG Position: 67 (position.label in template: 67.U) Reactivity: nanU Position: 68 (position.label in template: 68.G) Reactivity: nanG Position: 69 (position.label in template: 69.C) Reactivity: 0C Position: 70 (position.label in template: 70.U) Reactivity: nanU Position: 71 (position.label in template: 71.U) Reactivity: nanU Position: 72 (position.label in template: 72.A) Reactivity: 0A Position: 73 (position.label in template: 73.U) Reactivity: nanU Position: 74 (position.label in template: 74.G) Reactivity: nanG Position: 75 (position.label in template: 75.A) Reactivity: 0.5A Position: 76 (position.label in template: 76.G) Reactivity: nanG Position: 77 (position.label in template: 77.A) Reactivity: 0.5A Position: 78 (position.label in template: 78.A) Reactivity: 0A Position: 79 (position.label in template: 79.C) Reactivity: 1C Position: 80 (position.label in template: 80.A) Reactivity: 0.5A Position: 81 (position.label in template: 81.G) Reactivity: nanG Position: 82 (position.label in template: 82.C) Reactivity: 0C Position: 83 (position.label in template: 83.U) Reactivity: nanU Position: 84 (position.label in template: 84.U) Reactivity: nanU Position: 85 (position.label in template: 85.C) Reactivity: 0C Position: 86 (position.label in template: 86.U) Reactivity: nanU Position: 87 (position.label in template: 87.C) Reactivity: 0C Position: 88 (position.label in template: 88.U) Reactivity: nanU Position: 89 (position.label in template: 89.G) Reactivity: nanG Position: 90 (position.label in template: 90.G) Reactivity: nanG Position: 91 (position.label in template: 91.C) Reactivity: 0C Position: 92 (position.label in template: 92.A) Reactivity: 0.5A Position: 93 (position.label in template: 93.A) Reactivity: 0A Position: 94 (position.label in template: 94.U) Reactivity: nanU Position: 95 (position.label in template: 95.C) Reactivity: 0C Position: 96 (position.label in template: 96.A) Reactivity: 0.5A Position: 97 (position.label in template: 97.G) Reactivity: nanG Position: 98 (position.label in template: 98.G) Reactivity: nanG Position: 99 (position.label in template: 99.A) Reactivity: 0A Position: 100 (position.label in template: 100.C) Reactivity: 0.5C Position: 101 (position.label in template: 101.G) Reactivity: nanG Position: 102 (position.label in template: 102.U) Reactivity: nanU Position: 103 (position.label in template: 103.G) Reactivity: nanG Position: 104 (position.label in template: 104.A) Reactivity: 0.5A Position: 105 (position.label in template: 105.U) Reactivity: nanU Position: 106 (position.label in template: 106.G) Reactivity: nanG Position: 107 (position.label in template: 107.G) Reactivity: nanG Position: 108 (position.label in template: 108.U) Reactivity: nanU Position: 109 (position.label in template: 109.C) Reactivity: 0C Position: 110 (position.label in template: 110.A) Reactivity: 1A Position: 111 (position.label in template: 111.U) Reactivity: nanU Position: 112 (position.label in template: 112.G) Reactivity: nanG Position: 113 (position.label in template: 113.A) Reactivity: 0A Position: 114 (position.label in template: 114.G) Reactivity: nanG Position: 115 (position.label in template: 115.C) Reactivity: 0C Position: 116 (position.label in template: 116.C) Reactivity: 0C Position: 117 (position.label in template: 117.C) Reactivity: 0.5C Position: 118 (position.label in template: 118.G) Reactivity: nanG Position: 119 (position.label in template: 119.G) Reactivity: nanG Position: 120 (position.label in template: 120.A) Reactivity: 0.5A Position: 121 (position.label in template: 121.U) Reactivity: nanU Position: 122 (position.label in template: 122.A) Reactivity: 1A Position: 123 (position.label in template: 123.G) Reactivity: nanG Position: 124 (position.label in template: 124.C) Reactivity: 0C Position: 125 (position.label in template: 125.G) Reactivity: nanG Position: 126 (position.label in template: 126.A) Reactivity: 1A Position: 127 (position.label in template: 127.U) Reactivity: nanU Position: 128 (position.label in template: 128.U) Reactivity: nanU Position: 129 (position.label in template: 129.U) Reactivity: nanU Position: 130 (position.label in template: 130.C) Reactivity: 0.5C Position: 131 (position.label in template: 131.U) Reactivity: nanU Position: 132 (position.label in template: 132.U) Reactivity: nanU Position: 133 (position.label in template: 133.C) Reactivity: nanC Position: 134 (position.label in template: 134.C) Reactivity: nanC Position: 135 (position.label in template: 135.G) Reactivity: nanG Position: 136 (position.label in template: 136.C) Reactivity: nanC Position: 137 (position.label in template: 137.U) Reactivity: nanU Position: 138 (position.label in template: 138.A) Reactivity: nanA Position: 139 (position.label in template: 139.C) Reactivity: nanC Position: 140 (position.label in template: 140.A) Reactivity: nanA Position: 141 (position.label in template: 141.U) Reactivity: nanU Position: 142 (position.label in template: 142.G) Reactivity: nanG Position: 143 (position.label in template: 143.A) Reactivity: nanA Position: 144 (position.label in template: 144.A) Reactivity: nanA Position: 145 (position.label in template: 145.G) Reactivity: nanG Position: 146 (position.label in template: 146.A) Reactivity: nanA Position: 147 (position.label in template: 147.C) Reactivity: nanC Position: 148 (position.label in template: 148.G) Reactivity: nanG Position: 149 (position.label in template: 149.C) Reactivity: nanC Position: 150 (position.label in template: 150.C) Reactivity: nanC Position: 151 (position.label in template: 151.G) Reactivity: nanG Position: 152 (position.label in template: 152.A) Reactivity: nanA Position: 153 (position.label in template: 153.C) Reactivity: nanC Position: 154 (position.label in template: 154.U) Reactivity: nanU Position: 155 (position.label in template: 155.U) Reactivity: nanU Position: 156 (position.label in template: 156.C) Reactivity: nanC Position: 157 (position.label in template: 157.C) Reactivity: nanC Position: 158 (position.label in template: 158.G) Reactivity: nanG Position: 159 (position.label in template: 159.C) Reactivity: nanC Position: 160 (position.label in template: 160.A) Reactivity: nanA Position: 161 (position.label in template: 161.A) Reactivity: nanA Position: 162 (position.label in template: 162.C) Reactivity: nanC Position: 163 (position.label in template: 163.G) Reactivity: nanG Position: 164 (position.label in template: 164.C) Reactivity: nanC Position: 165 (position.label in template: 165.G) Reactivity: nanG Position: 166 (position.label in template: 166.3')3' 10 20 30 50 100 150


nnr-tsaE-amiB-mutL-miaA-hfq-hflX-hflK-hflC



Position: 10478-10602, Conformation: #0







Retained alignments:


   NC_002977.6       UAUU........UA..CGCCC.AG.........................................G..CCUAUGGG.........AAGAACAAGG..A.........AUUC.........UUCAGUCUCUAUCGCAGUCUUUCGGCUUACCG..C..AC..UG.CGAU...CC....A..G..G--........-..A..AG...A..C.GA.C...A.C.C.C...UG.................................................GUGCU...CGAGC...CUG.A.U...UC..C...G.AGU.UCU.........................................................UC...A.......GG.UA..U...........UUCAA...GA.........AA..UC......C.A..CC......G.G.CA
   NC_003910.7       AGUC........UA..UGCAG.AU.........................................G..CUUACAGC.........AAAGAUGCAG..A.........UUUC.........UAUAGUUUCUAUCGUAGUCUUGAGGCUUAUGA..A..AA..AA.GCUU...UA....A..U..AGU........A..A..AA...A..U.GA.U...A.U.C.A...UG.................................................GUGGU...UAAAC...CUG.A.U...AG..C...G.AAU.UCU.........................................................UC...C.......GU.UU..U...........UUGAA..aGA.........CG..GCa...guG.A..CG......U.-.--
   NC_003911.12      AUC-........UU..UGCCG.AG.........................................G..CCUUUGGC.........AAGGACCCGG..A.........AUUC.........UUCGAGUUCUACCGCUCGCUCUCGGCCUAUGA..A..AA..GG.CGCU...GC....A..A..GGG........G..G..CA...A..C.AG.C...U.C.G.A...UG.................................................GUGAU...GAGCC...CGG.A.U...UC..C...G.AGU.UCU.........................................................UC...A.......AC.UA..U...........CUGAA...GU.........CG..CC......C.U..CG.....gG.C.CG
   NC_004347.2       AAUU........UA..UUCGG.AU.........................................G..CUUAUAAC.........AAAGAUCCUG..A.........GUUU.........UUCAGCUUUAUGCGUAGCUUAGAUGCUUAUCG..U..GC..GA.GCUU...CU....C..U..GGU........A..A..UU...C..A.GA.U...A.U.C.A...UG.................................................GUGUU...AGAAC...CUG.A.U...AG..C...G.AAU.UUU.........................................................UC...A.......AA.UA..C...........AUGAA...GAgc.....ag--..-C......-.G..CU......G.C.G-
   NC_004556.1       UGUC........UA..CGGCA.AA.........................................G..CUGGUGCU.........AAUGACCCCG..C.........GUUC.........UACGCUUUUUACCGUAGUCUGGAGGCUUACCG..A..AA..CG.GUAU...GG....C..U..GAU........G..G..CA...A..U.GG.U...G.U.C.A...UU.................................................GUGCU...CGACA...AGA.A.C...GA..U...C.CGU.UCU.........................................................UG...A.......AG.UA..C...........UUUAA...GA........gCG..AUca..uuG.A..--......G.C.GG
   NC_004578.1       GAUC........UA..UUCCA.AG.........................................G..CCUACGGU.........CAGGAUCAGG..A.........GUUC.........UACGCGUUUUAUCGUAGCCUGCGUGCCUACCG..C..GA..AA.GCUU...UG....C..G..AAC........A..A..GA...G..U.GA.C...G.U.G.A...UG.................................................GUGCU...UGAUC...CAG.A.C...AG..C...G.AAU.UCU.........................................................UU...C.......GC.UA..C..........aUGGAA...AA.........AG..CC......A.A..--......G.C.CG
   NC_004603.1       GAUC........UA..UGCGA.AU.........................................G..CAUACAAC.........AAAGAUCCUG..A.........GUUC.........UUCAGCUUCCUACGUUCUCUAAGAGCAUACGA..A..AA..AU.CAUU...CA....G..C..UCU........A..A..GA...A..C.GA.C...A.U.U.C...UU.................................................GUUCU...GGAUC...CGA.A.G...AG..U...G.ACU.UCU.........................................................UC...C.......AG.UA..C...........AUGAA...UA.........AC..GC......G.A..AA......G.G.UG
   NC_004757.1       ---U........UA..UGCCG.AU.........................................G..CUUUCCAG.........AAGGAUGCGA..A.........AUUC.........UAUGAAUUUUACCGGAGUCUGGAGGCGUAUCG..A..AA..AU.CCUU...CA....A..A..AGC........A..A..GG...A..G.GA.U...A.U.U.C...UC.................................................GUCCU...GGAAC...CUA.A.U...UC..G...G.AGU.UUU.........................................................UC...A.......AA.UA..U...........AUGAA...AA.........CC..CC......G.U..UA.....gA.U.CG
   NC_005126.1       ACUG........UU..UGCUG.AU.........................................G..CGUUCAGU.........CAAGCGCCAG..A.........UUUC.........UAUACCUUUAUCCGUAGUUUACGUGCUUACGA..G..AA..AA.GCUU...UA....G..U..GAA........G..A..CGggaA..A.GA.U...G.U.U.C...UG.................................................GUAUU...AAGCC...CAG.A.A...GC..U...G.AUU.UCU.........................................................UC...C.......GC.UA..U...........AUGAA...AG.........CA..CC......U.G..AA......-.-.--
   NC_006138.1       AAUC........UA..UGCCA.AA.........................................G..CAUACUCC.........CAGGACCCUG..A.........GUUC.........UAUGCCUUCCAGAAGACUCUGGAAAGCUACCA..U..AA..G-.GUUG...UG....G..G..UGG........A..A..ACa.cA..A.AA.C...U.U.-.-...--.................................................GUUAU...CUCCU...CAG.A.C...UC..U...G.AUA.UGU.........................................................UC...A.......AA.UA..U...........CUCAA...GU.........CA..GU......U.A..CA......G.G.AA
   NC_006300.1       ACUU........UA..UACCG.AA.........................................G..CCUUUUCC.........GGCGAACCGC..A.........GUUU.........UAUAGUUUCGUGCGCAGCCUAAAAGCCUAUGA..A..AA..CA.GUUU...UG....C..C..GGU........U..C..UG...A..C.AA.C...A.U.G.A...UG.................................................AUUUU...AAAAC...CGG.A.C...AG..C...G.AUU.UCU.........................................................UC...C.......GC.UU..U...........AUGCA...AC.........CG..CC......U.A..AA......-.-.--
   NC_006512.1       AAUC........UA..CGCUG.AU.........................................G..CUUAUCAG.........AAAGACGCCG..A.........GUUC.........UUUGCCUUUAUCCGUAGUAUGGAAGCUUAUGG..U..GA..AU.CAUU...CG....G..U..UCC........G..G..CA...A..U.GA.C...A.U.G.U...UA.................................................GUGCU...UGAUG...CAA.A.C...AG..U...G.ACU.UUU.........................................................UC...C.......GU.UA..U...........UUACA...AA.........AU..AU......G.A..--......U.G.GG
   NC_006513.1       CAUC........UA..CGGCG.AA.........................................G..CGUAUGGC.........CGGAAUCCGG..A.........GUUC.........UACUCGUUCUACCGCAGCCUCGAGGCCUACCG..C..CA..GG.CUUU...CG....A..C..AGC........A..A..GA...A..C.GA.C...C.U.G.C...UG.................................................GUCGU...AGACC...CGA.G.U...UC..G...G.AGU.UUU.........................................................UC...A.......GA.UU..C...........AUGAA...GG.........AU.uCC......G.A..CG......G.G.GG
   NC_007205.1       GAUC........UU..UGCAG.AA.........................................G..CCUUUGGA.........AGAGAUGCAG..A.........AUUU.........UUUGCUUUCUACAGAGCGAUGCAAGCCUAUGA..A..A-..CU.GCUU...UA....A..UugGUG........G..A..CA...G..A.CA.U...-.-.-.-...--cu............................uua................AUUUU...AUCAC...CUG.A.C...AG..U...G.AAU.UCU.........................................................UU...A.......AA.UU..U..........uUUGGU...AA.........CA..UA......A.A..A-......C.C.UA
   NC_007292.1       ACUA........UA..UGCUA.CU.........................................A..CUUUUAAU.........GAAGACCCUU..C.........AUUU.........UAUGCUUUAGUACGUACCUUACGUGCAUAUGA..A..AA..UA.GUUU...UAa.gaA..A..AAU........A..A..UA...A..U.GA.U...C.U.U.A...UG.................................................GUGUU...AAGCG...CAG.A.A...AC..U...G.AUU.UUU.........................................................UA...C.......GU.UU..U...........AUGAA...AU.........CA..CC......A.A.aAA......G.U.AC
   NC_007406.1       GCUU........UU..CGCCC.AG.........................................G..CCUACAAU.........CAGGAUCCGG..C.........GUUC.........UUUGCAUUCUAUCGGUCGAUGAGCGCUUAUCA..G..AA..CG.GGUU...GA....A..G..---........A..G..UU...C..C.GA.-...-.-.-.-...--cacgc......................guuucc................-UUCU...GAAAC...CGG.A.U...UC..U...G.ACU.UCU.........................................................UC...C.......GU.UU..C..........uUUGGA...CA.........UA..UC......G.G..CG......G.C.CG
   NC_007481.1       UAUU........UA..UGCUA.AU.........................................G..CGUACAAU.........AAAGAUCCUG..A.........GUUU.........UUUAGUUUUGUUCGUUCGUUAGAGGCGUAUAA..A..CA..AA.CCUU...UA....A..A..AAC........A..A..GC...A..A.GA.C...G.U.A.A...UG.................................................GUUCU...UUCAC...CAG.A.U...AG..C...G.ACU.UCU.........................................................UU...A.......AA.UA..U...........AUGAA...AG.........GU..GC......U.A..CU......G.C.AC
   NC_007484.1       UAUU........UA..UGCGG.AA.........................................A..CUUUCGAC.........CAAGACCCAG..A.........AUUU.........UAUGCUCUUUAUCGUAGCCUAGCAGCUUAUCA..G..AA..GG.UUUU...--....-..-..---........-..-..UU...C..U.CA.A...G.A.G.-...--agcc........................uguua................UUGCU...AGAAC...CAA.A.G...GG..A...G.AAU.UUU.........................................................UC...C.......GU.UU..U...........UUCAAu.cCU.........AA..GC......U.A..GG......G.C.UU
   NC_007498.2       AAUC........UA..UGCCG.GC.........................................G..CCUACGGC.........AAGGACCGCA..A.........UUUC.........UACGCCUUUGUACGGAGUCUCGAGGCCUACCG..C..AA..A-.---U...CG....G..U..UGG.......cC..A..AA...A..C.GG.C...A.A.G.C...UG.................................................GUGAU...UACCA...CCG.A.C...AG..C...G.AUU.UCU.........................................................AU...C.......GC.UA..Uc.........uGCAGA...AA.........AG..CC......G.G..UA......A.A.AC
   NC_007510.1       GAUU........GC..CGCCG.AC.........................................G..CAUUCGGC.........CGCGACCCGC..A.........GUUC.........UACCAGUUCUACGCGAGCCUGCAGGCUUACCG..A..AA..CA.CGUU...CA....A..G..CGC........A..A..C-...-..-.GA.C...A.U.C.A...UC.................................................GUCGU...CGAUC...CCG.A.C...AG..C...G.AGU.UCU.........................................................UC...C.......GC.UU..C...........AUGCG...CA.........GC..CC......G.A..CG......G.G.CG
   NC_007519.1       CGUA........UA..UGCCG.CA.........................................G..CGCUGCAG.........CAGGCGCCGG..A.........AUUC.........UACGCAUUCAAGCGCAGUCUGGAAGCAUAUGA..A..AA..AA.GCCU...GA....A..A..GGC........A..A..AA...C..G.CG.U...A.U.C.A...UC.................................................A---U...GUCUU...CUG.A.C...GA..A...G.ACU.UCU.........................................................UC...A.......AC.UA..U...........CUGCA...GU.........AA.uAC......G.U..C-......C.C.CA
   NC_007626.1       AUC-........UU..CGCCG.AA.........................................G..CCUUCGGC.........AAGGACCCGC..A.........GUUC.........UUCGCCCUGUACCGCUCGCUGCAGGCCUACCG..C..AC..C-.----...--....-..-..GCG........C..U..GG...G..U.GA.C...-.-.-.-...--.................................ggcagca.ccacccugGUCCU...GUCGC...CGG.A.C...AA..C...G.AAU.UC-cugaaggcgu...ucggagccgg..................................UC...C.......GG.GC..C...........GCCGG..gGU.........CA..AU......G.A..CC......-.-.--
   NC_007645.1       AAUC........UA..CGCUG.AC.........................................G..CAUUCAGU.........AAAAAUCCAG..A.........GUUC.........UAUUCUUUCUAUCGGAGUAUGGGCGCUUACGA..G..CA..GA.CCUU...CU....C..C..AGU........A..A..GG...G..A.GA.C...U.U.G.C...UG.................................................AUCCU...GCAGC...CGG.A.C...AG..U...G.AAU.UUC.........................................................UU...A.......GA.UA..C...........CUGAA...AC.........AA..CC......A.C..AA......G.G.CG
   NC_007712.1       GCUG........UA..CGCCG.AU.........................................G..CGUUCAGC.........GAGGAUCCUG..C.........GUUC.........UAUGCAUUUAUCCGCAGCCUGCGUGCGUAUGA..G..AA..CA.GCUU...CA....A..C..AAC........A..A..CA...A..U.GA.U...G.U.G.A...UG.................................................GUGCU...GAGCC...CGG.A.A...AG..C...G.AUU.UCU.........................................................UC...C.......GC.UU..C...........AUGAA...GU.........CG..CC......G.G..AA......G.A.UA
   NC_007794.1       GACC........UA..UGCCG.AC.........................................G..CCUUCAAC.........AAGGACCCGG..C.........GUUC.........UACGAUUUCUACCGUGCGAUGCAGAGCUACGA..C..GC..GA.CCUU...CG....C..C..CAG........A..A..GG...G..-.--.U...-.-.-.-...--ucgagca..................ccgcgauc................GUACU...UUCGC...CGG.A.C...AA..C...G.AAU.AUC.........................................................UC...A.......AG.CA..G...........UUCAA...GGgcaa.gugaCG..CC......G.G..AG......G.U.--
   NC_007908.1       CGUC........UA..UGCGG.AA.........................................U..CGUUCGGG.........CGUGACCCCC..A.........GUUU.........GCGCAGUUUUAUCGCAGUCUGGAUGCCUACAA..G..GC..CA.GCUU...CA....A..C..AAG........A..A..GA...G..C.GA.U...G.U.G.A...UG.................................................GUGGU...GGAUC...CUG.-.-...--..-...-.---.---.......................ccag.........................cuccg--...A.......AU.UU..U...........UCAAA...--.........GU..CC......U.G..C-......G.C.GG
   NC_007912.1       UAUU........UA..UGCAU.CU.........................................G..CUUACGAC.........AAAGACCCAG..A.........GUUC.........UAUGCGUUUGUUCGCAGCCUUACAGCUUACCG..C..AG..CA.CCUU...UA....G..C..GGC........A..A..GC...A..A.GA.U...G.U.A.U...UG.................................................GUGUU...AUCAC...CUG.A.A...AG..U...G.AGU.UCU.........................................................UU...G.......AG.UA..C...........UUCAA..cAG.........UA..CA......A.A..--......U.A.AG
   NC_007951.1       AAUC........GC..CGCCG.AG.........................................G..CGUACGGC.........ACCGACCCGC..A.........GUUC.........UAUCAGUUCUAUCAAAGCAUGCAGGCGUACAG..G..AA..CA.CCUU...CA....A..G..---........C..C..GG...G..C.GA.C...G.U.G.A...UC.................................................GUGGU...CGACC...CGA.G.C...AA..C...G.AGU.UCU.........................................................UC...C.......GC.UU..C...........AUGCG...UA.........GC..CC......G.A..CC......G.G.CG
   NC_007954.1       GAUU........UA..UGCCG.AU.........................................G..CUUACAGU.........AAGGAUGCUG..A.........GUUU.........UACAGCUUCUUACGUAGUUUAGAGGCUUACAA..A..GA..AA.GCUU...UG....C..U..GGC........A..A..CA...A..U.GA.C...A.U.C.A...UG.................................................GUGCU...CGAGC...CUG.A.U...AG..U...G.AUU.UCU.........................................................UU...A.......AA.UA..C...........AUGAA...AU.........CA..GU......G.A..CU.....gG.C.AA
   NC_007964.1       GCUG........UU..UGCCG.CG.........................................G..CCUACAAU.........CAGGCCCCGG..C.........AUUC.........UUUGCGUUCUACCGCUCGAUGACCGCUUAUCA..G..AA..GG.GCUU...GA....A..G..GGC........A..G..CG...A..-.C-.-...-.-.-.-...--acccg......................cuuccu................--GCU...GAAGC...CGG.A.U...UC..C...G.AUU.UCU.........................................................UC...C.......GC.UU..C..........uUCGGA...CA.........UC..CC......G.G..CG......G.C.AG
   NC_008027.1       CAUC........UA..CGCUA.AA.........................................G..CCUACACG.........CAGGACGCUG..A.........CUUC.........UACGCGUUCUACCGUAGCCUGCAGGCCUACCG..C..GA..AA.GCUU...CU....C..C..AGC........A..A..GA...G..C.GA.C...G.U.G.C...UG.................................................GUCCU...GGAUG...CGA.A.G...AA..C...G.AGU.UCU.........................................................UC...C.......GC.UA..C...........CUGGA...CA.........AG.aGC......A.A..GC......C.C.UG
   NC_008260.1       AAUC........UA..UGCCG.AA.........................................G..CCUACAAU.........CAGGAUAAAG..A.........AUUU.........UUCCGUUUCUACCGUAGCUUGAGAGCCUAUAA..G..GA..AA.GUUU...CG....-..-..AUC........A..G..CCg.gA..A.GA.U...G.U.G.C...UA.................................................AUCCU...GGAGC...CGG.A.U...AG..C...G.ACU.UUU.........................................................UC...C.......GC.UA..C...........AUGAA...AG.........GG..GC......G.A..AG......G.G.CG
   NC_008340.1       CAUC........UA..CGCCG.CG.........................................G..CGUACAAC.........GACAACCCGG..A.........GUUC.........UACGCCUUCCACCGCAGCCUGGGGGCCUACAG..U..CA..GA.CCUU...CC....G..G..AGC........A..A..GG...A..G.GA.C...A.U.G.C...UG.................................................GUGCU...CUCAC...CGG.A.C...AG..U...G.AGU.UCU.........................................................UC...C.......GG.UA..C...........UUCAA...CA........cCA..AC......G.G..--......U.C.UG
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   NC_008709.1       AAUA........UA..UGGCG.AC.........................................U..CUUAUUCA.........CAAGAUGCUG..A.........AUUC.........UUCUCUUUUUUACGCAGUAUGAAAGCGUAUGA..G..AA..AA.GUUU...UA....C..A..GGG........A..A..AG...A..U.GA.U...G.U.C.A...UG.................................................GUGUU...AAGCC...CGG.A.C...UC..G...G.ACU.UCU.........................................................UU...A.......AG.UA..C...........AUGAA...CA.........AC..AA.....aG.A..--......U.U.--
   NC_008789.1       GAUC........UA..CGCCA.GC.........................................G..CCUACGGG.........CAGGAGUCGG..A.........CUUC.........UUCGCCUUCCAGCGCAGCCUGAGGGCCUACCG..C..GA..GU.CCUU...CC....A..G..GGU........G..A..CG...A..C.GA.C...C.U.G.U...UC.................................................GUCCU...GUCGC...CGG.A.U...UC..G...C.AGU.UCU.........................................................UC...C.......GC.UU..C..........uUCGAC...GG.........CG..GU......G.A.gCA......G.C.UG
   NC_008825.1       CCUG........UA..UGCCG.AG.........................................G..CCUUCGGU.........CGCGACCCGC..A.........GUUC.........GCGCAGUUCUAUCGCAGUCUCGAGGCCUAUCG..G..GC..GA.GCUU...UC....G..C..AGC........A..A..GA...C..C.GA.C...G.U.G.A...UG.................................................GUGGU...CGAGC...CCG.A.G...AG..C...G.AGU.UCU.........................................................UC...Cgc...gcGA.UG..C...........GAGGU...GA.........GG..GC......G.GgcCA......U.C.CU
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   NC_009379.1       GCUU........UA..UGCUG.AG.........................................G..CAUUUGGG.........CGUGAUCCCC..A.........AUUU.........GCUCAGUUCUAUCAAAGUCUUGAGGCCUAUCG..C..AA..UU.CCUU...UA....A..G..GAU........A..A..GA...A..A.GA.U...G.U.G.A...UG.................................................GUGGU...UGAGC...CUA.A.C...GG..C...G.AGU.UUU.........................................................UC...A.......AG.UA..C...........CUGCA...UA.........AA..--......A.A..AU......A.A.GA
   NC_009465.1       AAUAa......cUA..CGCAA.AA.........................................G..CCUAUAGU.........AAGAAUUCAG..A.........UUUU.........UAUGUUUUUUAUCGUUCAUUAGAGUCGUACAA..A..AA..GU.CAUU...UU....C..U..AAU........C..A..AA...A..U.AA.U...A.U.U.U...UA.................................................GUUCU...UAAUC...CAA.A.C...AC..G...G.AAU.UCU.........................................................UC...C.......GU.UA..C...........UUUAA...UC.........CA..CA......A.A..UU......-.-.--
   NC_009719.1       CAUC........UA..UGCCG.AA.........................................G..CCUAUUCG.........GCGGACCCGG..A.........GUUC.........UUCGCCUUCUACCGGUCGAUGGAAGCCUAUAG..A..GA..GG.GCCU...CG....C..G..GGC........G..A..CAa.cA..C.GA.C...-.-.G.A...UG.................................................AUCGU...GACAC...CGG.A.C...AG..C...G.AGU.UCU.........................................................UC...CgcuauuuCG.GU..A...........AUGAG...AG.........CG..GU......C.G..UC......G.C.UG
   NC_009792.1       ACUG........UU..UGCCG.AU.........................................G..CCUUCAGU.........CAGGACCCGG..A.........CUUC.........UACGCCUUCAUCCGUAGCCUGCGUGCUUACGA..G..AA..GA.GCUU...CG....A..A..GGC........A..A..UC...A..G.GA.C...G.U.G.A...UG.................................................AUCAU...GAGCC...CGG.A.C...AG..C...G.AUU.UCU.........................................................UC...C.......GU.UA..C...........AUGAA...GA.........CA..CC......G.A..AU......A.C.GG
   NC_009831.1       AGUU........UA..CGCCG.AU.........................................G..CUUACAAU.........AAGGAUCCUG..A.........GUUU.........UAUAGCUUUAUACGAAGCCUUGAAGCUUACAA..A..GA..AA.GUUU...CA....G..U..GGU........G..A..UU...C..G.AA.U...G.U.U.A...UG.................................................GUGUU...AGAGC...CUG.A.U...AG..C...G.AAU.UCU.........................................................UC...A.......AA.UA..U...........AUGAA...GAg.......cUC..UC......A.A..GG......U.A.AA
   NC_009901.1       GAUC........UA..UGCCG.AC.........................................G..CUUACACC.........AAAGAUGAAG..A.........GUUC.........UUCAGCUUUACGCGUAGUUUAGACGCAUAUAA..G..GC..AA.GCUU...CU....C..U..GGU........G..A..UA...A..A.GA.U...G.U.A.A...UG.................................................GUGCU...UGAAC...CAG.A.C...AG..U...G.AGU.UCU.........................................................UU...A.......GA.UA..U...........AUGAA...GA.........GU..UC......U.A..CU......G.G.AA
   NC_009937.1       GAUC........UU..CGCCC.AG.........................................G..CCUAUGGG.........CGCGAUCCGG..A.........GUUC.........UUCACCUUCUAUCGUUCGCUCCAGGCCUACGA..G..CA..GU.CGAU...CA....A..-..GGC........U..U..CC...G..A.CA.C...-.-.-.-...--.................................ccg.........ucucGUGUU...GAGCC...CGG.A.G...GC..G...G.ACU.UCU.........................................................UC...C.......GC.UU..C...........CUGCG...CA.........AC..CC......G.C..AA......G.G.CA
   NC_009952.1       CAUC........UU..CGCGG.CG.........................................G..CGUUCGGG.........GCCGACCCUG..A.........CUUC.........UUCGAGUUCUAUCGCUCGAUGACCGCCUAUGA..G..CG..UG.CGCU...GC....A..G..GGC........A..A..CA...A..U.UC.C...A.C.C.A...UG.................................................GUGAU...CGCGC...CGG.A.C...AG..C...G.AGU.UCU.........................................................UC...G.......AC.UA..U..........cUCGAC...GG.........CU..CU......G.A..C-......G.C.CG
   NC_010170.1       GCUG........UA..CGCCG.CC.........................................G..CCUUCGGC.........AAAGACCCCG..A.........UUUC.........UACACGUUCUACAAGAGCCUGGAAGCCUAUCG..G..UC..GU.CGUU...CU....C..G..AAU........U..C..CA...G..C.GA.C...G.U.G.C...UG.................................................GUGGU...CGACC...CCA.G.C...UC..G...G.AAU.ACU.........................................................UC...C.......AG.UU..C...........CUGAA...AA.........GC..UC......C.A..--......C.C.GG
   NC_010334.1       GAUU........UA..UGCCG.AU.........................................G..CAUAUACU.........AAAGAUCCUG..A.........GUUC.........UUUAGCUUUAUGCGAAGCUUAGAUGCUUAUAA..A..GC..AA.GUUU...CU....C..U..GGU........A..A..GA...A..U.GA.C...G.U.U.A...UG.................................................GUGCU...UGAGC...CUG.A.U...AG..U...G.AGU.UCU.........................................................UC...A.......GA.UA..U...........AUGAA...UA.........GU..UCau.cugG.A..AA......G.U.AG
   NC_010505.1       AUCC........-U..CGCCG.AC.........................................G..CGUUCGGC.........AAGGACGCGG..A.........CUUC.........UUCAGCUUCUACCGCUCGAUGCAGGCCUACGA..G..AG..CG.GGCU...GA....A..G..GGA........U..C..CG...A..C.AC.C...C.G.C.C...UG.................................................GUGAU...CAGCC...CGA.A.C...AC..G...G.ACU.UCU.........................................................UC...C.......GC.UU..C...........UUCAG...CG.........AU..CC......G.C..AG.....gG.C.CG
   NC_010506.1       GAUU........UA..UUCUG.AU.........................................G..CAUACUCU.........CAAGAUCCUG..A.........GUUC.........UAUAGUUUUCUUCGUAGCUUAGAAGCGUAUAA..A..GA..GA.GUUU...UU....C..A..GAC........G..G..AU...C..U.AA.U...G.U.G.A...UG.................................................GUUUU...AGAGC...CUG.A.U...AG..U...G.AGU.UUU.........................................................UC...A.......AG.UA..U...........AUGAA...UA.........A-..CU......C.U..CA......G.U.UG
   NC_010508.1       GAUC........GC..CGCCG.AU.........................................G..CGUUCGGU.........CGCGAUCCGC..A.........GUUC.........UAUCAGUUCUACGCGAGCCUGCAGGCCUACCG..G..AA..UA.CGUU...CA....A..G..CGC........A..A..C-...-..-.GA.C...A.U.C.A...UC.................................................GUCGU...CGAUC...CCG.A.C...AG..C...G.AGU.UCU.........................................................UC...C.......GC.UU..C...........AUGCG...CA.........GC..CC......G.A..CG......G.G.CG
   NC_010519.1       AUUA........UA..UUCAG.AU.........................................G..CGUUUGCU.........CAAGAACCGG..A.........GUUU.........UUCAGUUUUAUGCGUAGUAUGAAAGCCUAUGA..A..AA..CA.GCUU...UG....A..A..GGU........U..C..GA...A..U.AA.U...A.U.G.A...UG.................................................AUUUU...AAAAC...CGG.G.U...AG..U...G.AUU.UCU.........................................................UC...C.......GU.UU..U...........AUGGA...UC.........AC..CC......U.A..AA......-.-.--
   NC_010524.1       GCUG........UA..UGCCG.AG.........................................U..CAUUCGGC.........CGCGAUCCGC..A.........GUUC.........GCGCAGUUCUAUCGCAGCCUCGAGGCCUAUCG..G..GC..GA.GCUU...UC....G..C..AGC........A..A..GA...G..C.GA.C...G.U.G.A...UC.................................................GUGGU...CGAUC...CGA.G.C...AG..C...G.AUU.UCU.........................................................UC...C.......GG.GC..C...........AUGCG...UGgcgg.cgcuGC..CG......C.G..CC......U.G.CG
   NC_010554.1       ACUA........UU..UGCUG.AU.........................................G..CAUUCAGU.........CAAGAUCCUG..A.........CUUC.........UAUGCGUUUAUCCGUAGCUUACGUGCUUAUGA..G..AA..UA.GCUU...UAa.uaA..A..GAC........G..G..UA...A..U.GA.C...G.U.C.A...UG.................................................GUGUU...AAGUC...CAG.A.U...AG..C...G.AUU.UCU.........................................................UA...C.......GC.UA..U...........AUGAA...AG.........CA..CC......A.A..CU......A.A.AG
   NC_010581.1       UAUU........UU..CGCCG.AG.........................................G..CGUUCGGA.........CGAGACCAGG..A.........UUUU.........UUCGCUUUUUAUCGCUCGAUGCAGGCCUAUGA..A..AC..GA.GUCU...--....-..-..GAA........A..C..CCg.a-cuC.GA.C..cA.A.G.C...UG.................................................GUCAU...CGAUC...CAG.G.G...UC..C...G.AGU.UUU.........................................................UC...C.......GU.UU.uC...........UCGGA...AG.........CU..CU......U.C..AG......G.A.CG
   NC_010622.1       GAUU........GC..CGCUG.AA.........................................G..CGUACGGC.........CAGGAUCCGC..A.........GUUC.........UACCGGUUUUACCAGAGCAUGCAGGCGUACAG..G..AA..CA.GCUU...CA....A..G..---........C..C..GG...G..C.GA.C...G.U.G.A...UG.................................................GUCGU...CGACU...CGA.G.C...AG..C...G.AGU.UCU.........................................................UC...C.......GC.UU..C...........AUGCG...CG.........GC..CC......G.G..AC......G.G.CG
   NC_010681.1       GAUC........GC..CGCCG.AC.........................................G..CUUAUGGC.........AGCGACCCGC..A.........GUUC.........UACCAGUUCUAUCAAAGCAUGCAGGCGUACAA..G..AA..CA.CCUU...CA....A..G..---........C..C..GG...G..C.GA.C...G.U.G.A...UC.................................................GUCGU...CGAUC...CGA.G.C...AA..C...G.AGU.UCU.........................................................UC...C.......GC.UU..C...........AUGCG...UA.........GC..UC......G.A..CC......G.G.CG
   NC_010694.1       ACUG........UU..UGCUG.AC.........................................G..CGUUCAGC.........AAAGAUCCAG..A.........CUUC.........UACGCGUUCGUGCGUAGCCUGCGUGCUUACGA..U..AA..CA.GCUU...CA....A..G..AGC........A..A..UC...A..G.GA.C...G.U.G.A...UG.................................................GUUCU...UAGCC...CUG.A.U...AG..C...G.ACU.UCU.........................................................UC...C.......GC.UU..U...........AUGAA...GA.........GC..CC......U.G..CU......A.C.CG
   NC_010725.1       CAUC........CU..GGCGG.AA.........................................G..CCUUCGGG.........CAGGAUGCCG..A.........CUUC.........UUCGCCUUCUACCGGUCGAUGCAGGCCUACGA..G..CA..GG.CGCU...GA....A..G..---........G..G..UC...A..G.GA.C...-.-.-.-...--.................................acgc.......ggcucGUGGU...GAGCC...CGA.A.C...UC..G...G.ACU.UCU.........................................................UC...C.......GC.UA..C...........UUCAA...CGa......ucCG..CA......G.-..GG......U.C.GU
   NC_011312.1       ACUG........UA..CGCUG.AU.........................................A..CGUUUAAC.........AAAGAGCCUG..A.........GCUC.........UUUGGUUUCAUUCGCUCAUUACGUGCGUAUGA..A..AA..AU.CAUU...CA....A..C..AGU........A..A..GA...A..U.GA.C...A.U.C.U...UG.................................................GUACU...UGAUC...CUA.A.G...AC..U...G.AUU.UCU.........................................................UC...A.......AA.UA..C...........AUGAA...UG.........AU..CC......A.A..UGg....gU.G.GG
   NC_011420.2       AUCC........-U..GGCCG.AC.........................................G..CCGGCGCC.........CGGAAUCCGG..A.........GUUC.........UACCAGUUCUACCGCUCGCUGGAGGCCUACCG..G..CA..GG.CGCU..gCG....U..C..A--........G..G..AC...A..A.CA.C...C.U.C.A..cUG.................................................GUUCU...GUCUC...CGG.A.C...AG..C...G.ACU.UCU.........................................................UC...C.......GC.UU..C...........UUCGA...CAgc.....auGG..GU......G.C..GC......U.C.GG
   NC_011566.1       AAUA........UA..UGCUG.AC.........................................G..CUUACACU.........AAAGACCCUG..A.........GUUC.........UUUAGCUUUAUGCGAAGCUUAGAUGCGUAUAA..A..GA..GA.GCUU...UG....A..U..GGU........G..A..CC...G..U.GA.U...G.U.C.A...UG.................................................GUGCU...UGAAC...CUG.A.U...AG..U...G.AAU.UCU.........................................................UU...A.......GA.UA..U...........AUGAA...GA.........GC..UC......U.A..CA......-.-.GG
   NC_011567.1       AAUU........UA..UAACG.AA.........................................A..CAUUCGCA.........AAAGAUCCUG..A.........AUUU.........UACUCAUUUUACCGUACGCUCGAAUCGUAUAA..G..AC..AA.CGAU...CG....G..C..GAA........G..A..UA...C..G.GU.U...-.-.-.-...--.................................................GUCAU...UUUAC...CG-.-.-...-G..C...C.AAU.UCU.........................................................--...C.......CG.UA..U...........GCGAA...AU.........GG..UU......A.U..UA......G.G.AC
   NC_011666.1       CAUC........UU..CGCCG.CA.........................................U..CCUUCGGC.........AAGGACCCGG..A.........CUUU.........UUCGCCUUCUUCCGCUCCAUGCAGGCCUAUGA..G..AC..CG.GGCU...GCa.auC..G..GGC........G..A..--...-..-.UA.C..gC.G.G.A...UG.................................................GUGAU...CAGCC...CGA.A.A...UC..G...G.AGU.UUU.........................................................UC...C.......GG.UU..U...........UUCGG...CU.........CC..CC......C.U..CC......G.G.CG
   NC_011753.2       GAUC........UA..CUCUG.AU.........................................G..CAUUUAGC.........AAAGACCCUG..A.........GUUC.........UAUGGCUUCAUGCGUUCACUGCAAGCUUAUGA..G..AC..AU.CAUU...UA....G..C..GAU........A..A..GA...G..C.GA.C...A.U.U.C...UA.................................................GUACU...GGAUC...CGA.A.G...AC..U...G.ACU.UCU.........................................................UC...C.......AA.UA..C...........AUGAA...UC.........AA..GC......A.A..--......G.C.GG
   NC_011768.1       --UU........UA..CGCCA.AG.........................................G..CCUACGGC.........GAGGAUCCGG..A.........AUUU.........UAUUCCUUUAUGAAAACCCUGGAUACCUAUAA..A..GU..AA.CCUU...G-....-..-..AAG........A..A..GG...A..C.AG.C...A.G.C.A...UC.................................................GUGCU...GUCCA...CGG.A.U...UC..G...G.AAU.UCC.........................................................UC...A.......AG.UA..C..........uUUAAA...GG.........AU..CCgg..ggA.A..UA......G.G.C-
   NC_011894.1       AUCC........U-..CGCCA.GU.........................................G..CCUUCGGC.........CAGGACCCGG..A.........CUUC.........UUCGCCUUCUACCGGUCGAUGCAGGCCUACGA..G..AA..GG.GGCU...GA....C..G..GGG........A..-..CC...G..A.GA.C...-.-.-.-...--.................................gcg.........ccucGUGAU...CGGCC...CCG.G.C...UC..G...G.ACU.UCU.........................................................UC...C.......GC.UA..C...........UUCAA...CGa......ccCG..CAg....gG.A..CG......A.C.C-
   NC_011901.1       GACC........UA..UGCUC.GG.........................................G..CCUUUGGC.........GAGGACGAGG..A.........GUUC.........UUCUCCUUCUACCGGAGCCUGAUCGCCUAUCG..C..AG..CA.CCAU...GA....C..C..GGC........G..A..CA...A..C.AC.C...A.U.G.U...UC.................................................GUCAU...CGAGC...CGG.A.U...UC..G...G.ACU.UCU.........................................................UC...C.......GC.UA..C...........UUCGG...CA.........GC..CC.....cA.U..CG......-.-.--
   NC_011963.1       ACUCgg....ucUA..UGCGG.AG.........................................G..CCUUCGGC.........CGCGAUCCCG..A.........GUUC.........UUCGCCUUCACCCGCUCGCUCACCUCCUACGA..G..CG..C-.----...--....-..-..GCG........C..U..GC...A..G.GG.C...-.-.-.-...--.................................ggcggcu.ccuccaucGUCAU...GCAGC...CCG.A.C...AG..C...G.AGU.UCU.........................................................UC...C.......AG.UA..U...........CUGCG..cAG.........CG.aCC......G.C..GC......G.C.CG
   NC_012560.1       CAUC........UA..UGCCC.GG.........................................G..CGUACGGG.........CAGGAUCAGG..A.........GUUC.........UACUCCUUCUACCGCAGCCUGCAGGCCUAUCG..C..AG..CA.GCUU...CG....C..G..GAC........A..A..GA...A..G.GA.U...G.U.G.C...UG.................................................GUCCU...GGAUC...CGA.A.G...AG..C...G.AGU.UCU.........................................................UC...C.......GC.UA..U...........CUGGA...GC.........AG.gCC......A.A..--......U.C.CA
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   NC_012796.1       CGUG........UG..GGCCG.AG.........................................G..CCGUGAGC.........AAGUCUCCGG..A.........CUUU.........UUCGGUUUCACCCGCAGCCUGGAGGCCUACCA..C..AA..GG.CCUU...CG....C..C..---........A..A..AA...A..C.AG.C...C.G.G.C...UC.................................................UUUUU...GACGC...CGG.A.C...AG..C...C.CCU.UCC.........................................................UC...A.......AA.UA..U...........CUGCG..c-Ug......acCG..UC......G.A..GG......GaC.GG
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   NC_013422.1       GACU........UA..UGCCA.AG.........................................G..CUUACGGC.........CAAGAUCCGA..A.........GUUC.........UUUGAAUUCGAUCGGAGUUUACAAGCCUACAA..G..AA..GG.CUUU...CG....A..U..CAA........G..G..CG...G..G.GA.U...A.C.U.U...UC.................................................GUACU...GAAUC...CUG.A.U...AG..C...C.CGU.UCU.........................................................UC...A.......AG.UA..U...........UUCCG...UGa.......uUC..GC......A.A..GA......G.U.CG
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   NC_013960.1       GGUU........UA..UGCAG.AG.........................................A..CCUUUGGC.........CGGGAUCCAC..A.........GUUU.........UAUGCCCUUUACCGCAGCCUAAGCGCGUAUCG..C..AA..GG.UUUU...CG....C..G..GAAg......gA..G..GA...A..A.CA.A..uC.U.C.C...UG.................................................UUGCU...GGAGC...CCA.A.A...GG..G...G.AAU.UUU.........................................................UC...C.......GC.UU..C...........UUUAAuccUA.........AG..CC......G.G..AA......U.U.UG
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   NC_014313.1       -AUC........UU..CGCGG.AC.........................................G..CGUUCGGA.........AAGGACCCGG..A.........CUUC.........UUCCAGUUCUACCGUUCGAUGCAGGCGUACAC..G..AC..GG.CGAU...CA....A..-..GCC........G..A..GC..gA..C.AC.G...C.G.U.U...UG.................................................CUUCU...GUCGC...CGA.G.C...AG..C...G.ACU.UCU.........................................................UC...C.......GC.UA..C...........UUCGA...AG.........AU..CC......G.A..AC......G.G.UG
   NC_014500.1       ACUG........UU..UGCCG.UC.........................................G..CGUUCAGU.........CAGGAUCCGG..C.........UUUU.........UAUGGUUUUAUUCGUAGCCUGCGCGCCUAUGA..G..AA..UA.GCUU...UA....A..C..AGCa.....ccA..A..UC...A..G.GA.U...G.U.U.C...UG.................................................GUGCU...GAGUC...CCG.A.U...AG..U...G.AUU.UCU.........................................................UC...C.......GU.UA..U...........AUGAA...AU.........CG..CCcg..agA.A..AA......G.C.CU
   NC_014532.2       GAUC........UU..CUCGC.AG.........................................G..CUUACGGC.........AAGGAUGAAG..A.........GUUC.........UUCUCCUUCUGGCGCAGCCUCGAUGCCUAUCG..C..GA..CA.GCUU...CA....A..G..GGU........G..A..CG...G..C.GA.C...A.U.G.C...UG.................................................GUGCU...GGAUC...CCU.C.C...AG..C...G.ACU.UCU.........................................................UC...C.......AG.UA..U...........CUCAA...GA.........GU..CC......G.A..CG.....cC.G.AU
   NC_014541.1       GAUC........UA..CGCGG.AC.........................................A..CCUACGGC.........CAGAACCCUG..A.........GUUC.........UAUGCUCUGCUGCGCAGCCUGGAUGCCUACAA..G..GC..CU.CCUU...CC....G..C..AGC........A..A..GG...A..C.GA.C...G.U.A.C...UG.................................................GUGAU...CUCAC...CGG.A.U...UC..C...G.AGU.UCU.........................................................UC...C.......AG.UU..U...........AU--G...AA.........CA..GC......A.A..GG......U.G.CG
   NC_014664.1       CAUC........UA..CGCCG.AC.........................................G..CAUUCGGA.........CGCGACCGCG..A.........CUUC.........UUCGCCUUCUACCGCUCCAUGCAGGCUUACGA..A..GA..AU.CGCU...CA....A..G..GGU........A..G..CC...A..C.AC.U...-.-.-.-...--.................................cgca........ucguGGUCU...CGCCC...UCG.-.-...UC..C...G.AGU.UCU.........................................................UC...C.......GU.UA..U...........UUCAA...CG.........AG..CC......G.A..UGa...gcG.C.GG
   NC_014722.1       GAUC........UA..UGCGA.AC.........................................G..CAUUCGGC.........CGGGACCCGC..A.........AUUC.........UAUGCGUUCUACCAGAGCCUGGAGGCCUAUCG..G..CG..CA.GCAU...--....-..U..GGC........A..A..CG...G..G.GA.U...A.U.C.G...UG.................................................GUCGC...GGAUC...CGA.A.C...AG..C...G.AAU.UCU.........................................................UC...C.......GC.UU..C...........AUGAA...AA.........AU..CC......C.G..CC......G.G.CG
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   NC_015259.1       CAUC........UU..CGCCG.AG.........................................G..CCUUCGGG.........GCGGACCCGG..A.........CUUC.........UUCGCCUUCUACCGCUCGAUGCAGGCCUACGA..G..AC..CG.GCUU...CA....A..G..GAC........-..G..GC...G..G.AA.C...G.A.G.C..cUG.................................................GUGCU...GUCGC...CGG.A.U...UC..G...A.ACU.UCU.........................................................UC...C.......GC.UA..U...........UUCAA...CGa......ucCG..GC......G.G..--......G.U.CU
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   NC_015554.1       AAUC........UA..UGCAG.AU.........................................G..UUUAUUCU.........AAAAAUGCUG..A.........UUUU.........UACAGCUUCUUAAGAAGUAUGGAUGCAUACAA..A..GC..CA.GCUU...UA....A..U..AAU........A..A..GC...A..A.GA.U...G.U.G.A...UG.................................................GUGAU...CGCGC...CUG.A.U...AG..C...G.ACU.UUU.........................................................UC...C.......GC.UA..C...........AUGAA...CG.........CA..UC......U.A..AA......-.-.GG
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   NC_015567.1       ACUG........UU..UGCUG.CC.........................................G..CAUUCAGC.........CAGGAUCCGG..A.........CUUC.........UAUGCCUUUAUCCGUAGCCUGCGUGCUUAUGA..A..AC..CA.GUUU...CAg.caG..C..AAC........A..A..CC...A..G.GA.C...G.U.G.A...UG.................................................GUACU...GAGUC...CGG.A.C...AG..C...G.AUU.UCU.........................................................UC...C.......GC.UA..C...........AUGAA...GU.........CG..CC.....uG.A..UU......-.-.--
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   NC_015968.1       ACUG........UU..CGCUG.AU.........................................G..CCUUCAGC.........CAGGAUCCAG..A.........CUUC.........UAUGCCUUCAUCCGUAGCCUGCGUGCUUACGA..G..AA..UA.GCUU...CC....A..G..AGC........A..A..CC...A..G.GA.U...G.U.G.A...UG.................................................GUGCU...CAGCC...CGG.A.C...AG..C...G.AUU.UCU.........................................................UC...C.......GU.UA..U...........AUGAA...GA.........CG..CC......A.G..CU......A.A.CG
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   NZ_LT907975.1     AAUC........UA..UGCUG.AU.........................................G..CAUUGGGU.........CGUUCGCCGG..A.........AUUC.........UACGCAUUCACCCGCAGCCUGGAAGCAUACAG..G..AA..AA.GUCU...CA....A..A..GAC........A..A..CU...C..C.CG.U...C.U.G.A...UU.................................................AU---...GACGC...CGA.A.A...UC..U...C.CCU.UCC.........................................................UC...A.......AG.UA..C...........AUGAA...GU.........AA..AC......A.U..UG......U.U.CG
   NZ_LT907988.1     GUUG........UA..CGCCG.AG.........................................G..CCUUUGGC.........CGCGACCCGC..A.........GUUC.........UACAGCUUCUACAAGAGCCUGGAAGGGUAUCG..U..GC..GG.CAUU...CU....C..G..GGC........U..C..GG...A..C.GA.C...A.U.C.C...UG.................................................GUCGU...GGACC...CCU.C.G...UC..G...G.AGU.UCU.........................................................UC...C.......GC.UU..C...........AUGAA...GU.........CC..GC......C.C..AG......G.G.CG
   NZ_OU015430.1     GAUC........UA..CGCCG.AG.........................................G..CGGCGCAG.........AAGGACGCUG..G.........CUUC.........UACACCUUCCAGCGCAGCCUGGAGGCGUACCG..C..AA..GU.CGUU...CC....A..G..GAC........G..G..CA...A..U.GG.C...G.U.G.A...UC.................................................GUGCU...CGAUC...GUG.A.C...GA..C...G.CCU.UCC.........................................................UG...C.......AA.UA..Cc.........uCGGCA...AC.........GA..CC......G.U..--......U.G.AG
   NZ_OU343031.1     GAUU........UA..CGCAC.AC.........................................G..CAUUCAGU.........CGCGACCCAA..A.........AUUU.........UAUGCCUUCUAUCAAAGCUUAGAGGUUUAUCG..G..CG..CA.GUAU...--....-..C..GGU........A..A..GG...G..U.GA.U...A.U.A.G...UA.................................................GUAGC...UGAUC...CGA.A.U...AG..C...G.AGU.UUU.........................................................UC...C.......GA.UU..U...........AUGAA...AA.........AU..CC......U.A..CA......G.G.UA
   NZ_OU594967.1     AAUU........UA..CGCGA.AA.........................................G..CCUAUACU.........CAAGCUCCGA..A.........GUUU.........UUCGAGUUCUGGCGAAGUCUGCAAGCCUAUAA..A..AC..CA.GCUU...UG....A..A..UCG........G..G..CC...A..U.GA.U...G.U.G.A...UG.................................................GUGAU...UAAAC...CCG.A.U...AG..C...G.AGU.UUU.........................................................UC...G.......AUgUG..U...........UUAAA...AA.........AG..GCcc..ggA.U..GC......U.U.UG
   NZ_OU912926.1     AAUU........UA..UGCUG.CU.........................................G..CAUUUGGC.........CGUAAUGCAG..A.........GUUU.........UAUGCAUUUUAUCGCAGCAUGGAUGCCUAUAA..A..CA..AA.GCUU...CA....A..G..AAC........A..A..GA...G..C.GA.U...G.U.C.A...UG.................................................GUGAU...GGAUC...CCA.G.C...UC..C...G.CAU.UCU.........................................................UU...A.......AA.UA..U..........cUCAAG...GG.........UU..CC......A.G..UA......-.-.--
   NZ_OX366334.1     AAUC........UA..UAAUG.AG.........................................G..CAUUUAAG.........GCUGAUGAAG..A.........GUUC.........UUUAACUUUUAUCGCUCUAUGAAAGCUUACAA..U..AA..AU.CAUU...UG....C..U..GAG........G..G..UA...A..U.AC.U...A.A.A.U...UU.................................................GUGCU...UUCAC...CAA.A.U...AA..U...A.AUU.UCU.........................................................UA...G.......AU.AU..U...........UUGAA...CAa......ggGA..UG......G.A..AA......U.A.GU


   Structure         ((((............(((..............................................)..))..))))................(((..(...........((...........((..(((((..(((((.............................................(((..............((........((.(................................................................))).....)))))....((.(...............................................................................))...).......)).))..)...........)))))..............))..........).)..........).).))


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nnr-tsaE-amiB-mutL-miaA-hfq-hflX-hflK-hflC



Position: 10478-10602, Conformation: #0







97% 90% 75% 50% Nucleotide present N N N Nucleotide identify E < 0.1 Base-pair covariation E < 0.05 Helix-level covariation 97% 90% 75%

U U Y G C R A G C U Y R R Y R R G A Y C C G A U U Y U Y R U U Y Y C G U R R G C U A Y R R R U U Y R R R R R R A Y Y U G U U C C R A Y Y G A U U C U U Y R U Y U R R Y R R 5'