nagE



Position: 765-869, Conformation: #1







DMS reactivity > 1.0 0.0 0.4 0.7 G/U/No data
Position: 0 (position.label in template: 0.5')5' Position: 1 (position.label in template: 1.G) Reactivity: nanG Position: 2 (position.label in template: 2.A) Reactivity: nanA Position: 3 (position.label in template: 3.C) Reactivity: nanC Position: 4 (position.label in template: 4.A) Reactivity: nanA Position: 5 (position.label in template: 5.U) Reactivity: nanU Position: 6 (position.label in template: 6.U) Reactivity: nanU Position: 7 (position.label in template: 7.A) Reactivity: nanA Position: 8 (position.label in template: 8.A) Reactivity: nanA Position: 9 (position.label in template: 9.C) Reactivity: nanC Position: 10 (position.label in template: 10.C) Reactivity: nanC Position: 11 (position.label in template: 11.G) Reactivity: nanG Position: 12 (position.label in template: 12.C) Reactivity: nanC Position: 13 (position.label in template: 13.U) Reactivity: nanU Position: 14 (position.label in template: 14.U) Reactivity: nanU Position: 15 (position.label in template: 15.C) Reactivity: nanC Position: 16 (position.label in template: 16.U) Reactivity: nanU Position: 17 (position.label in template: 17.A) Reactivity: nanA Position: 18 (position.label in template: 18.U) Reactivity: nanU Position: 19 (position.label in template: 19.G) Reactivity: nanG Position: 20 (position.label in template: 20.C) Reactivity: nanC Position: 21 (position.label in template: 21.C) Reactivity: nanC Position: 22 (position.label in template: 22.G) Reactivity: nanG Position: 23 (position.label in template: 23.G) Reactivity: nanG Position: 24 (position.label in template: 24.U) Reactivity: nanU Position: 25 (position.label in template: 25.G) Reactivity: nanG Position: 26 (position.label in template: 26.A) Reactivity: nanA Position: 27 (position.label in template: 27.C) Reactivity: nanC Position: 28 (position.label in template: 28.G) Reactivity: nanG Position: 29 (position.label in template: 29.G) Reactivity: nanG Position: 30 (position.label in template: 30.C) Reactivity: nanC Position: 31 (position.label in template: 31.A) Reactivity: nanA Position: 32 (position.label in template: 32.C) Reactivity: 1C Position: 33 (position.label in template: 33.C) Reactivity: 0.5C Position: 34 (position.label in template: 34.G) Reactivity: nanG Position: 35 (position.label in template: 35.C) Reactivity: 0C Position: 36 (position.label in template: 36.G) Reactivity: nanG Position: 37 (position.label in template: 37.G) Reactivity: nanG Position: 38 (position.label in template: 38.G) Reactivity: nanG Position: 39 (position.label in template: 39.G) Reactivity: nanG Position: 40 (position.label in template: 40.A) Reactivity: 0A Position: 41 (position.label in template: 41.U) Reactivity: nanU Position: 42 (position.label in template: 42.G) Reactivity: nanG Position: 43 (position.label in template: 43.U) Reactivity: nanU Position: 44 (position.label in template: 44.U) Reactivity: nanU Position: 45 (position.label in template: 45.C) Reactivity: 0.5C Position: 46 (position.label in template: 46.A) Reactivity: 0.5A Position: 47 (position.label in template: 47.U) Reactivity: nanU Position: 48 (position.label in template: 48.G) Reactivity: nanG Position: 49 (position.label in template: 49.U) Reactivity: nanU Position: 50 (position.label in template: 50.C) Reactivity: 0.5C Position: 51 (position.label in template: 51.C) Reactivity: 0C Position: 52 (position.label in template: 52.G) Reactivity: nanG Position: 53 (position.label in template: 53.G) Reactivity: nanG Position: 54 (position.label in template: 54.C) Reactivity: 1C Position: 55 (position.label in template: 55.U) Reactivity: nanU Position: 56 (position.label in template: 56.U) Reactivity: nanU Position: 57 (position.label in template: 57.C) Reactivity: 0C Position: 58 (position.label in template: 58.U) Reactivity: nanU Position: 59 (position.label in template: 59.U) Reactivity: nanU Position: 60 (position.label in template: 60.C) Reactivity: 1C Position: 61 (position.label in template: 61.C) Reactivity: 0C Position: 62 (position.label in template: 62.C) Reactivity: 0C Position: 63 (position.label in template: 63.G) Reactivity: nanG Position: 64 (position.label in template: 64.A) Reactivity: 0A Position: 65 (position.label in template: 65.U) Reactivity: nanU Position: 66 (position.label in template: 66.C) Reactivity: 0C Position: 67 (position.label in template: 67.A) Reactivity: 0.5A Position: 68 (position.label in template: 68.U) Reactivity: nanU Position: 69 (position.label in template: 69.G) Reactivity: nanG Position: 70 (position.label in template: 70.A) Reactivity: 0A Position: 71 (position.label in template: 71.U) Reactivity: nanU Position: 72 (position.label in template: 72.G) Reactivity: nanG Position: 73 (position.label in template: 73.U) Reactivity: nanU Position: 74 (position.label in template: 74.U) Reactivity: nanU Position: 75 (position.label in template: 75.C) Reactivity: 0C Position: 76 (position.label in template: 76.G) Reactivity: nanG Position: 77 (position.label in template: 77.G) Reactivity: nanG Position: 78 (position.label in template: 78.U) Reactivity: nanU Position: 79 (position.label in template: 79.C) Reactivity: 0C Position: 80 (position.label in template: 80.U) Reactivity: nanU Position: 81 (position.label in template: 81.G) Reactivity: nanG Position: 82 (position.label in template: 82.C) Reactivity: 0C Position: 83 (position.label in template: 83.C) Reactivity: 0C Position: 84 (position.label in template: 84.G) Reactivity: nanG Position: 85 (position.label in template: 85.G) Reactivity: nanG Position: 86 (position.label in template: 86.G) Reactivity: nanG Position: 87 (position.label in template: 87.U) Reactivity: nanU Position: 88 (position.label in template: 88.G) Reactivity: nanG Position: 89 (position.label in template: 89.C) Reactivity: 0C Position: 90 (position.label in template: 90.G) Reactivity: nanG Position: 91 (position.label in template: 91.G) Reactivity: nanG Position: 92 (position.label in template: 92.C) Reactivity: 0C Position: 93 (position.label in template: 93.G) Reactivity: nanG Position: 94 (position.label in template: 94.C) Reactivity: 0C Position: 95 (position.label in template: 95.U) Reactivity: nanU Position: 96 (position.label in template: 96.G) Reactivity: nanG Position: 97 (position.label in template: 97.G) Reactivity: nanG Position: 98 (position.label in template: 98.C) Reactivity: 0.5C Position: 99 (position.label in template: 99.G) Reactivity: nanG Position: 100 (position.label in template: 100.A) Reactivity: 0.5A Position: 101 (position.label in template: 101.U) Reactivity: nanU Position: 102 (position.label in template: 102.G) Reactivity: nanG Position: 103 (position.label in template: 103.U) Reactivity: nanU Position: 104 (position.label in template: 104.A) Reactivity: 1A Position: 105 (position.label in template: 105.C) Reactivity: 0C Position: 106 (position.label in template: 106.U) Reactivity: nanU Position: 107 (position.label in template: 107.U) Reactivity: nanU Position: 108 (position.label in template: 108.C) Reactivity: 0.5C Position: 109 (position.label in template: 109.G) Reactivity: nanG Position: 110 (position.label in template: 110.C) Reactivity: 0C Position: 111 (position.label in template: 111.A) Reactivity: 0A Position: 112 (position.label in template: 112.G) Reactivity: nanG Position: 113 (position.label in template: 113.C) Reactivity: 0C Position: 114 (position.label in template: 114.A) Reactivity: 0A Position: 115 (position.label in template: 115.C) Reactivity: nanC Position: 116 (position.label in template: 116.C) Reactivity: nanC Position: 117 (position.label in template: 117.G) Reactivity: nanG Position: 118 (position.label in template: 118.A) Reactivity: nanA Position: 119 (position.label in template: 119.A) Reactivity: nanA Position: 120 (position.label in template: 120.A) Reactivity: nanA Position: 121 (position.label in template: 121.G) Reactivity: nanG Position: 122 (position.label in template: 122.A) Reactivity: nanA Position: 123 (position.label in template: 123.G) Reactivity: nanG Position: 124 (position.label in template: 124.C) Reactivity: nanC Position: 125 (position.label in template: 125.G) Reactivity: nanG Position: 126 (position.label in template: 126.U) Reactivity: nanU Position: 127 (position.label in template: 127.C) Reactivity: nanC Position: 128 (position.label in template: 128.G) Reactivity: nanG Position: 129 (position.label in template: 129.U) Reactivity: nanU Position: 130 (position.label in template: 130.C) Reactivity: nanC Position: 131 (position.label in template: 131.C) Reactivity: nanC Position: 132 (position.label in template: 132.G) Reactivity: nanG Position: 133 (position.label in template: 133.A) Reactivity: nanA Position: 134 (position.label in template: 134.U) Reactivity: nanU Position: 135 (position.label in template: 135.G) Reactivity: nanG Position: 136 (position.label in template: 136.G) Reactivity: nanG Position: 137 (position.label in template: 137.U) Reactivity: nanU Position: 138 (position.label in template: 138.U) Reactivity: nanU Position: 139 (position.label in template: 139.G) Reactivity: nanG Position: 140 (position.label in template: 140.G) Reactivity: nanG Position: 141 (position.label in template: 141.C) Reactivity: nanC Position: 142 (position.label in template: 142.G) Reactivity: nanG Position: 143 (position.label in template: 143.G) Reactivity: nanG Position: 144 (position.label in template: 144.U) Reactivity: nanU Position: 145 (position.label in template: 145.A) Reactivity: nanA Position: 146 (position.label in template: 146.3')3' 10 20 30 50 100


nagE



Position: 765-869, Conformation: #1







Retained alignments:


   NC_002570.2       AC.C.G..U..U..U..C..U..UC.............GCAG...G...U...GA..............................................UC...C.G.A...C...A....G..C.AG.G...G..U..C..A..U..U..U...A.U..G..G..C.GGGU...UUUUUCCCGA.UUAUGAUGU.UCGGUUU..GC.C.AG......CUG...CAG...C.A.C.UU...GCGAU...G...A...-...-...--...-...-uugcggcg.....................gcugagccu...GA.G..C...G.....C.A.G........A.....A..A....A.G..A...A..GU..A..A..C..C..G.G.....G...A..U...G..cU.C....A.U....C..GG..A
   NC_003155.5       GG.C.G..C..U..U..C..C..UG.............GCGG...G...U...GA..............................................CC...C.G.A...C...C....G..C.CG.G...A..C..A..G..U..U..C...A.U..G..A..C.CGGC...UUCUUCCCGA.UCAUGAUGU.UCGCCCU..GC.C.GG......CCG...---...-.-.-.--...-----...-...-...-...-...--...-...-ccugccuggcgauc.........gugcacugugcccgc...--.-..-...-.....-.-.-........C.....C..C....G.A..G...C..--..-..G..C..C..G.C.....A...A..G...G...U.Cg.ucG.G....C..GG..C
   NC_003869.1       AC.A.G..G..U..U..U..U..UU.............GCGG...G...A...GA..............................................CC...C.G.A...C...G....G..C.AG.G...A..A..U..U..U..U..U...A.U..G..G..C.AGGC...UUUUACCCAA.UAAUGAUGU.UCGGACU..UC.C.AG......CAG...CAG...C.A.U.UG...GCUAU...G...U...-...-...--...-...-gggcagc.......................agcuaagc...CA.G..A...G.....C.A.G........A.....G..A....-.A..A...A..GU..U..GuaU..C..U.G.....-...-..G...U...G.U....G.U....U..UA..U
   NC_004603.1       AC.C.G..U..U..U..C..U..--.............-UCG...G...C...GG..............................................CG...A.U.A...Ag.aG....C..G.CU.G...G..U.gU..A..U..U..C...A.U..G..A..A.CGGU...UUCUUCCCAG.UAAUGAUGU.UCGGCCU..AC.C.AG......GUG...CAG...C.A.C.UU...GCUAU...G...U...A...C...CU...A...G.........................................CG.G..C...U....cC.U.G........-.....U..U....G.A..G...A..AA..C..G..U..A..G.C.....C...A..A...G...U.U....G.G....G..GG..G
   NC_006177.1       GG.C.G..C..U..U..C..U..UC.............GCCG...G...C...GA..............................................CC...C.G.A...G...C....G..C.--.G...G..G..C..UucU..U..C...A.U..G..G..C.CGGC...UGGUUCCCGA.UCAUGAUGU.UCGGCCU..GA.U.CG......GCG...CCG...C.C.U.UC...GCCAU...G...A...C...C...CA...C...G.........................................CG.G..C...C.....C.G.G........C.....C..C....G.A..G...A..AC..C..G..C..A..A.G.....C...G..G...G...U.G....G.G....C..GG..C
   NC_007510.1       AC.C.G..C..U..U..C..U..UC.............GCGG...G...C...GA..............................................CC...C.G.A...C...C....G..C.GG.G...C..A..C..C..U..U..C...A.U..G..G..C.CGGC...UUCUUCCCGA.UCAUGAUGU.UCGGCCU..GC.C.GG......CGG...CGU...G.U.C.UG...GCGAU...G...C...U...G...CA...C...G.........................................AA.G..C...G.....C.C.G........A.....A..G....G.A..A...C..GC..C..G..C..G..C.G.....A...U..G...G...U.C....G.G....C..GG..C
   NC_007951.1       AU.C.G..C..U..U..C..U..UC.............GCGG...G...C...GA..............................................CC...C.G.A...C...U....G..C.GG.G...C..A..C..C..U..U..C...A.U..G..A..C.GGGC...UUCUUCCCGG.UCAUGAUGU.UCGGCCU..GC.C.GG......CUG...CCU...G.U.C.UC...GCGAU...G...U...U...C...CA...C...G.........................................AA.G..C...G.....C.C.G........A.....A..G....G.A..G...C..GC..C..G..C..G..C.G.....G...U..G...G...U.C....G.G....C..GG..C
   NC_008010.2       CG.C.G..C..U..A..C..A..UC.............GCAG...G...C...GA..............................................CC...G.C.U...C...G....G..C.GG.G...C..A..U..C..U..U..C...A.U..G..A..C.CGGC...UUCUUCCCGA.UCAUGAUGU.UUGCGCU..GC.C.CG......CCG...CCG...C.G.C.UG...GCGAU...G...G...U...C...CA...G...G.........................................AG.G..C...C.....C.G.C........C.....C..C....G.A..G...C..GG..C..-..G..C..C.G.....G...G..U...G...A.U....C.G....C..GG..G
   NC_009142.1       CC.C.G..C..U..U..C..U..UC.............GGCG...G...C...GA..............................................CC...C.G.U...C...C....G..C.GG.G...C..A..C..C..U..U..C...A.U..G..A..C.CGGC...UUCUUCCCGA.UCUUCAUGU.UCGCCCU..GC.C.CG......CCG...CCG...C.G.C.UG...GCGAU...-...-...-...-...--...-...-cuggcagugcg................cgaagcccucg...CA.G..C...G.....-.-.-........C.....A..A....G.A..U...C..GU..G..G..G..C..G.G.....U...G..U...G...A.U....-.-....-..--..-
   NC_009792.1       AC.C.G..C..U..U..C..U..AC.............GCGG...G...U...GA..............................................CG...G.C.A...C...G....G..C.GG.G...G..A..U..G..U..U..C...A.U..G..U..C.CGGC...UUCUUCCCGA.UCAUGAUGU.UUGGUCU..GC.C.GG......GUG...CGG...C.G.C.UG...GCGAU...G...U...A...C...UU...C...G.........................................CU.G..C...G.....C.C.G........A.....A..A....G.C..G...C..GU..C..G..U..C..C.A.....A...U..G...G...U.U....G.G....C..GG..U
   NC_010508.1       AC.C.G..C..U..U..C..U..UC.............GCGG...G...C...GA..............................................CC...C.G.A...C...C....G..C.GG.G...C..A..C..C..U..U..C...A.U..G..G..C.CGGC...UUCUUCCCGA.UCAUGAUGU.UCGGCCU..GC.C.GG......CGG...CAU...G.U.C.UC...GCGAU...G...C...U...G...CA...C...G.........................................AA.G..C...G.....C.C.G........A.....A..G....G.A..G...C..GU..C..G..C..G..C.G.....A...U..G...G...U.C....G.G....C..GG..C
   NC_010572.1       CC.C.G..G..U..U..C..U..UC.............GCCG...G...G...G-acc.....................................cga...CG...G.C.-...-...-....-..-.C-.-...G..G..UcaG..U..U..C...A.C..C..U..C.GGGC...UUCUUCCCGA.UCAUGAUGU.UCGGCCU..GC.C.GG......CCG...CCG...C.G.C.UC...GCCAU...C...A...C...C...CA...C...U.........................................GC.G..C...G.....C.G.G........C.....C..C....G.A..A...C..GC..C..G..C..A..A.G.....G...A..A...G...U.-....G.G....C..GG..G
   NC_010622.1       AU.C.G..C..U..U..C..U..UU.............GCAG...G...C...GA..............................................C-...-.C.C...G...A....C..C.GC.G...G..G..C..A..CuuU..C...A.U..G..A..C.GGGC...UUCUUCCCGA.UCAUGAUGU.UCGGUCU..GC.C.CG......CAG...CGU...G.U.C.UC...GCAAU...G...C...U...C...CA...C...G.........................................AA.G..C...G.....C.C.C........A.....A..G....G.A..G...C..GC..C..G..C..G..C.A.....C...U..G...G...U.C....G.G....C..GG..C
   NC_010681.1       AU.C.G..C..U..U..C..U..UC.............GCGG...G...C...GA..............................................CC...C.G.A...C...U....G..C.GG.G...C..A..C..C..U..U..C...A.U..G..A..C.GGGC...UUCUUCCCGG.UCAUGAUGU.UCGGUCU..GC.C.GG......CUG...CCU...G.U.C.UC...GCGAU...G...U...U...C...CA...U...G.........................................AA.G..C...A.....C.C.G........A.....A..G....G.A..G...C..GC..C..G..C..G..C.G.....G...U..U...G...U.G....G.G....C..GG..U
   NC_010694.1       AC.C.G..C..U..U..C..U..AU.............GCCG...G...U...GA..............................................CG...G.C.A...C...G....G..C.GG.G...A..A..U..G..U..U..U...A.U..G..U..C.CGGC...UUCUUCCCUA.UCAUGAUGU.UUGGCCU..GC.C.GG......GCG...CAG...C.G.C.UG...GCGAU...G...U...A...C...CU...U...G.........................................CG.G..C...G.....C.C.U........A.....A..G....G.C..C...C..GC..C..G..C..C..C.G.....A...U..G...G...U.C....G.G....C..GG..C
   NC_011753.2       AC.C.G..U..U..U..C..U..UC.............GGUG...G...C...GA..............................................UA...A.A.G...G...C....G..C.UG.G...C..G..U..A..U..U..C...A.U..G..A..A.CGGU...UUCUUCCCAG.UAAUGAUGU.UCGGUCU..AC.C.AG......GUG...CUG...C.A.C.UU...GCAAU...G...U...A...C...CU...A...G.........................................CU.G..C...Ucc.ugC.U.G........-.....A..A....A.A..A...C..GC..A..G..C..C..A.A.....G...U..U...G...G.U....G.G....C..GC..-
   NC_012691.1       AC.C.G..U..U..U..C..U..UU.............GCCG...G...C...GA..............................................U-...-.C.A...U...A....C..U.GC.G...G..G..C..G..UcuU..C...A.U..G..A..C.UGGU...UUCUUCCCAA.UCAUGAUGU.UUGGUCU..GC.C.UG......CUG...CGG...C.A.U.UU...GCCAU...G...U...A...U...CU...G...G.........................................CG.G..C...A.....C.C.G........A.....A..A....G.A..U...C..GU..C..G..U..G..C.C.....C...A..G...G...U.G....G.G....U..GG..U
   NC_012880.1       CU.C.G..C..U..A..U..A..UG.............GCGG...G...C...GA..............................................CC...-.C.G...A...-....C..G.GC.G...G..G..C..A..A..A..-...C.U..G..U..C.CGGC...GGAUUCCUGU.UCAAAAUGU.ACGGUCU..GC.C.GG......CUG...CCG...C.U.A.UU...GCUAU...-...-...-...-...--...-...-cuggca..........................cuccgc...UA.A..A...C.....C.G.G........A.....A..A....-.-..-...-..AC..C..G..C..G..C.U.....A...A..A...G...U.C....G.G....G..GG..G
   NC_012912.1       --.-.-..-..-..-..-..-..AG.............GC--...-...-...--gauugaugccggu.................aaagcgauuccgg...--...G.U.A...U...U....A..C.CG.G...G..C..G..U..U..A..U...C.A..G..G..C.CGGU...UUCUUCCCGA.UCAUGAUGU.UUGGCUU..GC.C.GG......GCG...CGG...C.G.C.UG...GCAAU...U...U...A...U...CA...-...-cu.................................gug...CGcG..U...C.....C.U.G........A.....A..A....A.U..-...-..CG..C.aG..U..C..G.G.....G...U..G...G...C.G....G.G....G..AU..U
   NC_012962.1       GG.U.A..C..U..G..C..A..AU.............UAUG...G...-...-G..............................................UA...U.U.A...C...A....G..-.--.G...C..C..G..U..U..A..U...C.A..G..G..C.UGGU...UUCUUCCCAA.UUAUGAUGU.UUGGUUU..GC.C.UG......GUG...CGG...C.A.U.UA...GCGAU...G...U...A...U...--...-...-cgcu.............................gugca...-C.G..U...C.....C.U.G........A.....A..A....A.U..A...A..AG..C..-..C..A..A.A.....A...U..U...G...C.C....G.G....U..AU..U
   NC_013093.1       AG.C.G..G..U..U..C..U..UC.............GCGG...G...C...GA..............................................CC...-.C.G...A...C....G..G.CG.G...G.cA..C..G..U..U..C...C.A..G..A..C.CGGC...UUCUUCCCGA.UCUUCAUGU.UCGCGCU..CC.C.GG......CCG...CCG...C.G.C.UG...GCGAU...-...-...-...-...--...-...-cgugcaca.....................ccgcccgac...CG.G..C...G.....C.A.G........-.....A..A....G.A..A...G..GU..C..G..U..C..G.C.....G...G..G...C..aU.C....A.U....-..--..-
   NC_013131.1       CC.C.G..G..U..U..C..C..UG.............AACG...G...C...GA..............................................CC...C.G.A...A...C....G..C.CG.G...G..C..U..G..U..U..C...C.A..G..A..C.CGGC...UUCUUCCCGA.UCAUGAUGU.UCGGGCU..GC.C.CG......GCG...CGG...C.G.C.UG...GCGAU...G...U...G...G...CG...C...U.........................................CG.G..C...G.....C.U.G........C.....C..G....G.C..C...A..AG..C..G..C..-..-.-.....A...A..G...G...U.G....G.C....C..GG..C
   NC_013159.1       AC.A.A..C..U..U..C..U..UC.............GACG...G...-...--..............................................CG...A.C.C...C...C....G..A.GG.C...C..G..G.cG..C..C..-uucA.U..G..A..C.CGGG...UUCUUCCCGA.UCUUCAUGU.UCGCCCU..GC.C.CG......CCG...CGG...C.G.C.UG...GCGAU...C...-...-...-...-U...G...G.........................................CA.G..-...A.....C.C.G........C.....U..C....G.-..-...C..CC..G..A..G..C..C.A.....G...A..A...G...A.A....G.G....U..CG..U
   NC_013235.1       GC.U.G..A..C..C..C..G..GUuc........gccGCCG...G...C...GA..............................................CC...C.C.A...C...C....G..C.UG.G...G..C..U..G..C..U..G...A.C..C..U..C.CGGU...UUCUACCCGA.UCCUGAUGU.UCGGCCU..GC.C.GG......CCG...CCG...C.G.C.UG...GCCAU...G...A...U...C...CA...C...A.........................................UG.G..C...C.....A.A.C........A.....A..G....A.A..G...C..AG..A..A..G..A..A.G.....A...U..C...G...C.C....U.U....C..GG..C
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   NZ_LR134494.1     AC.C.G..C..U..U..C..U..AC.............GCGG...G...U...GA..............................................CG...G.U.A...C...U....G..C.CG.G...G..A..U..G..U..U..C...A.U..G..U..C.AGGC...UUCUUCCCGA.UCAUGAUGU.UCGGUUU..GC.C.GG......GUG...CGG...C.A.U.UG...GCCAU...G...U...A...C...UU...C...G.........................................CU.G..C...G.....C.C.G........A.....A..A....G.A..A...C..GU..C..G..C..C..C.A.....A...U..G...G...U.U....G.G....C..GG..U
   NZ_LR134501.1     CC.C.G..C..U..A..C..U..UC.............GCCG...G...C...GA..............................................CC...C.G.G...A...C....G..C.GG.G...C..G..G..U..C..U..G...C.U..G..U..C.CGGG...UUCUUCCCGG.UGCUGAUGU.UCGGCCU..GC.C.CG......GUG...CGG...C.G.C.UG...GCGAU...G...U...G...G...CU...G...G.........................................CC.A..C...G.....C.C.C........A.....A..G....-.-..-...-..--..-..G..C..C..C.G.....G...C..G...G...A.CgcagA.U....C..GG..G
   NZ_LR134531.1     AC.C.G..U..U..U..C..U..AU.............AAUG...G...U...GA..............................................UG...C.U.A...C...U....G..C.CG.G...G..A..U..G..U..U..U...A.U..G..U..C.UGGC...UUCUUCCCGA.UCAUGAUGU.UUGGUUU..AC.C.GG......GUG...CAG...C.A.C.UG...GCAAU...G...U...A...C...UU...U...G.........................................CC.G..-...-.....C.U.A........A.....A..C....-.C..G...G..GU..C..G..U..C..G.U.....G...C..A...GccgU.G....G.G....U..GG..U
   NZ_LR699553.1     AU.C.G..C..U..U..C..U..UU.............GCGG...G...C...GA..............................................CC...C.G.A...C...U....G..C.GG.G...C..A..C..C..U..U..C...A.U..G..A..C.AGGC...UUCUUCCCGG.UCAUGAUGU.UCGGCCU..GC.C.GG......CUG...CCU...G.U.C.UC...GCGAU...G...U...U...C...CA...C...G.........................................AA.G..C...G.....C.C.G........A.....A..G....G.A..A...C..GC..C..G..C..G..C.G.....G...U..G...G...U.C....G.G....C..GG..C
   NZ_LS483470.1     AC.C.G..U..U..U..C..U..AU.............AACG...G...U...GA..............................................UG...C.U.A...C...C....G..C.AG.G...G..A..U..G..U..U..C...A.U..G..U..C.GGGC...UUCUUCCCGA.UCAUGAUGU.UCGGCCU..GC.C.GG......GUG...CGG...C.G.U.UU...GCUAU...G...U...A...U...CU...G...G.........................................CU.G..C...C.....A.A.G........C.....C..A....G.A..G...C..GC..C..G..U..U..C.U.....U...C..C...G...U.G....G.G....C..GG..G
   NZ_LS483476.1     AC.A.A..U..U..A..A..G..--ag.........auGGUG...U...A...GA..............................................UA...U.U.A...C...A....G..C.AG.G...U..A..A..U..U..U..C...A.U..G..G..C.UGGU...GAAUUUCCGG.UUAUGAUGU.UUGGACU..UC.C.GG......CAG...CGG...C.A.C.UU...GCAAU...G...U...A...U...CA...U...-gc.................................agc...CC.G..U...C.....C.U.G........A.....A..A....G.G..A...A..AA..A..A..C..U..U.G.....U...U..G...C...U.G....G.U....U..UG..U
   NZ_LS999205.1     CC.C.G..C..U..A..C..U..UU.............GCCG...G...C...GA..............................................CC...C.C.A...A...G....G..G.CG.G...C..C..A..G..U..U..C...A.U..G..A..C.CGGG...AUGUUCCCGA.UGAUGCUGU.UCGGCCU.gCC.C.GC......CGC...CUG...C.C.U.G-...GCGAU...G...U...A...C...CG...C...A.........................................AC.A..C...A.....C.C.G........C.....C..G....G.A..A...C..--..-..G..G..C..G.C.....A...A..G...G...U.Aa.ugG.G....C..GG..G
   NZ_LT615367.1     GA.U.G..C..C..G..G..U..AA............aGCCA...U...C...CC..............................................UG...G.C.A...U...C....A..C.CG.G...G..C..G..C..U..A..U...C.A..G..G..C.CGGU...UUCUUCCCGA.UUAUGAUGU.UUGGCCU..GC.C.GG......GUG...CCG...C.A.C.UG...GCGAU...U...U...A...U...--...-...-cacu..............................gcgc...CC.G..C...C.....C.U.G........A.....A..A....A.-..-...C..CG..C.aG..C..C..G.G.....G...U..G...G...C.G....G.G....A..AU..U
   NZ_LT906441.1     CC.U.G..C..U..U..C..-..-U.............UC--...-...-...--aacggcacuguc..................gagacgaacuccu...--...G.G.A...C...C....G..G.AU.C...-..-..-..C..U..U..C...A.U..G..A..C.CGGA...UUCUUCCCGA.UCAUGAUGU.UCGCCCU..AC.C.CG......GUG...CUG...C.C.C.UG...GCGAU...C...U...A...C...C-...-...-aca...............................ccgc...CA.A..A...C.....C.U.G........A....gA..A....G.A..A...G..AA..-..-..G..G..U.C.....A...C..U...G...G.U....G.G....C..GU..G


   Structure         ((.(.(..(..(.....(..(..((.............((((...........................................................))...).).................(.((.(...(..(..(..(..(..(..(..............(.((((.........((((...........)))).....)).).))............(((.....(.(.((..............................................................................)).)..).........).).)......................).)..)...)..))..).....)..)..).).....)...)..)...)..........).)....)..))..)


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nagE



Position: 765-869, Conformation: #1







97% 90% 75% 50% Nucleotide present N N N Nucleotide identify E < 0.1 Base-pair covariation E < 0.05 Helix-level covariation 97% 90% 75%

C G U Y C Y Y R G G G R Y R R G U U Y A U G C G G Y U U C U U C C C R R U Y A U G A U G U U Y G G Y C U R C C G G C G C Y U G C A U R Y R R R R R R R Y R 5'